Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Rodgers (2017)
Title Sensitive next-generation sequencing method reveals deep genetic diversity of HIV-1 in the Democratic Republic of the Congo.
Citation J Virol
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 20
NumPts 20
Subtype A, F, H, C, J, D, Unknown, CRF09_cpx


Clinical IN Isolates

CG-0001-01 CG-0001-01 None    S17N, V31I, I72V, K111R, T112V, I113V, T124A, T125A, G134N, K136H, V201I, T218TS, I220L, L234I, S283G  
CG-0018a-01 CG-0018a-01 None    I84L, L101I, T112V, S119P, T124A, T125A, K136Q, V201I, D207N, K211T, Q221N, L234I, D256E  
CG-0059-01 CG-0059-01 None    K14R, I72V, L101I, T112V, T124A, T125A, G134D, I135V, D167E, K188R, V201I, I208L, L234I, R269K  
CG-0062-01 CG-0062-01 None    E13X, S17R, R20K, A21X, S24EG, I72V, L101I, T112V, T124A, T125A, G134D, I135V, D167E, I203X, I204V, D207G, I208L, K211R, L234I, K244E, A265V Y15S, H16R, N18Q, M22~, A23~, I200E, V201E 
CG-0066-01 CG-0066-01 None    E11D, K14R, A21T, V31I, M50I, I84M, E96D, L101I, T112V, S119R, T124A, T125A, G134D, D167E, V201I, L234I, S283G  
CG-0086-01V CG-0086-01V None   T97A V31I, M50I, L74I, L101I, T112V, I113L, T124G, T125A, G134D, T206S, T218S, L234I, S283G  
CG-0147-02V CG-0147-02V None    E11D, K14R, A21T, V31I, M50I, I72V, T112V, T124A, T125A, G134S, D167E, K188R, V201I, Q216H, N222K, L234I, I268L, R269K  
CG-0151-02V CG-0151-02V None    E10D, K14R, V31I, L74I, I84M, L101I, K111Q, T112V, T124A, T125A, K136Q, G193E, V201I, L234I, N254K, S255G, D278A, S283G  
CG-0248-02V CG-0248-02V None    I72V, T112V, S119G, T122I, T124A, T125A, G134GD, V201I, I220L, Q221T, L234I  
CG-0260-02V CG-0260-02V None    E11D, K14R, S17T, V31I, V37I, L45Q, I72V, L101I, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, A205S, T218S, Q221H, N222K, L234I, D256E  
CG-0331-02V CG-0331-02V None    K14R, V31I, I72V, Y99F, L101I, K111T, T112V, T124A, T125A, I135V, K173R, V201I, L234I, D256E, V281M  
CG-0349-02 CG-0349-02 None    V37I, I72V, L74I, T112L, T124A, T125A, K136Q, V201I, A205S, T206S, L234V, D256E, S283G  
CG-0373-02V CG-0373-02V None    K7R, K14R, V31I, L101I, T112I, T124G, T125A, K136Q, E157Q, K160Q, D167E, V201I, T206S, K215N, T218I, L234I, D256E, R269K, D278A, S283G E152K 
CG-0378-02V CG-0378-02V None    K14R, V31I, I72V, L101I, G106A, S119T, T124A, T125A, G134D, I135V, D167E, V201I, T206S, D207E, L234I, D253E, S255N, S283G, R284G, D286A  
CG-0379-02V CG-0379-02V None    E11D, V31I, A91T, L101I, T112V, S119P, T122I, T124A, T125A, D167E, V201I, T206S, L234I, D256E, S283G  
CG-0382-02V CG-0382-02V None    I72V, T112V, I113V, T124A, T125A, D167E, V201I, T218I, L234I, A265V  
CG-0536-02 CG-0536-02 None   T97A E11Q, K14R, L101I, T112V, T124A, T125A, G134D, K136Q, K173R, V201I, T218L, K219N, N222K, L234I, D256E, S283G  
CG-0538-02 CG-0538-02 None    K14R, S17C, V31I, I72V, L101I, T112M, T124A, T125V, K136Q, K173R, V201I, T218S, K219N, N222K, L234V, D256E, I268L, S283G  
CG-0575-02 CG-0575-02 None    S17N, V31I, L101V, T112I, T124N, T125V, K136R, V201I, K219N, N222K, L234I, D256E, S283G  
CG-1208-D CG-1208-D None    E11D, S24N, D25E, V31I, M50I, I84M, L101I, T112V, T124N, K136Q, V201I, T206S, T218I, L234I, I251L, A265V, R269K, D278A