Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Reynolds (2016)
Title Low rates of transmitted drug resistance among newly identified HIV-1 seroconverters in rural Rakai,Uganda.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 24
NumPts 24
Subtype D, A, C + D, C, CRF10_CD, B


Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
A109764R16 A109764R16 None None   V35T, T39M, E40D, K49R, V60I, K122E, D123N, I135K, S162C, D177E, I178L, V179I, I195L, Q207E, R211K, V245Q, D250E, A272S, L282C, L283I, T286A, I293V, K311R  
B066571R16 B066571R16 None None   V35I, V60I, K122E, D123N, I135T, I142V, K173T, Q174K, I178M, T200A, Q207E, R211K, V245Q, E248D, A272P, E291D, V292I, P294T  
B105781R16 B105781R16 None None   K20R, V35T, K49R, V60I, S68N, D121Y, K122E, R125K, S162A, D177E, I178M, V189I, Q207E, R211K, V245E, D250E, A272P, L282C, L283I, I293V, V317A  
C011467R16 C011467R16 None None   V35T, E40D, K49R, V60I, D177E, G196E, T200I, Q207R, R211K, V245K, D250E, A272P, I274V, K275R, Q278H, L282C, T286A, I293V, K311R  
C047288R15 C047288R15 None None   E6D, V35T, E40D, V60I, K102Q, K122E, D123S, I135T, I142V, K173S, Q174K, D177E, I178L, V179I, T200A, Q207A, R211S, F214L, D250E, A272P, K277R, I293V  
C103245R16 C103245R16 None None   E6D, V35T, T39A, V60I, V118I, K122E, D123S, I135T, K173L, Q174S, V179I, T200A, Q207A, R211S, F214L, V245E, Y271H, T286A, E291D, I293V, P294T, K311R, E312N  
C105423R16 C105423R16 None None   P4T, V35T, E40D, K49R, V60I, T69I, D121H, K122E, I135T, S162C, D177E, T200A, Q207E, V245E, D250E, A272P, Q278H, L282C, I293V, E297D, K311R  
C105546R16 C105546R16 None None   V35T, T39I, K49R, V60I, K122E, I135T, K173L, Q174K, V179I, T200I, Q207A, R211S, I244V, V245I, D250E, A272T, K277R, L282C, T286A, I293V  
D065439R15 D065439R15 None None   K32R, V35T, T39M, S48T, K49R, V60I, K104R, K122E, D123S, I142V, D177E, Q207E, V245R, D250E, K277R, L282C, L283I, T286A, I293V  
D105042R16 D105042R16 None None   V21I, V35T, T39K, K49R, V60I, D121Y, K122E, I135T, I159V, Q174L, D177E, I178M, T200I, Q207G, R211K, V245K, D250E, A272Q, K277R, L282C, I293V, E297A  
E055178R16 E055178R16 None None   E6D, K11H, E28A, V35T, T39A, V60I, D121H, K122E, I135T, K166R, Q174H, D177E, G196E, T200I, I202V, Q207E, R211K, V245N, D250E, A272P, K277R, Q278H, L282C, T286A  
E102420R15 E102420R15 None None   V35I, T39A, K49R, V60I, D121Y, K122E, I135T, I142T, D177E, I178L, T200I, Q207E, R211K, V245K, D250E, A272P, L282C, I293V, P294S  
E110164R16 E110164R16 None None   V35T, E40D, K43R, K49R, V60I, A158S, D177E, T200I, Q207E, R211K, V245K, D250E, A272S, L282C, L283I, R284K, T286A, I293V, P313T  
F066208R16 F066208R16 None None   V35I, K49R, V60I, D121Y, K122E, I135T, D177E, I178M, Q207E, R211K, V245K, D250E, A272S, V276I, K277R, L282C, T286A, I293V  
F104382R16 F104382R16 None None   K11T, V21I, V35T, K43E, E44D, V60I, K122E, D123S, D177E, I178M, E194D, T200G, Q207A, R211K, V245K, D250E, A272P, L282C, L283I, T286A, I293V, E300D, L301F  
G100812R16 G100812R16 None None   K11T, K20R, V21I, V35K, S162H, K173L, D177E, V179I, T200A, I202V, Q207D, R211K, V245Q, E248D, V261I, T286A, E291D, I293V, P294T, E312A  
G105485R16 G105485R16 None None   V35T, V60I, D121Y, K122E, A158S, K166R, D177E, I178M, T200I, Q207E, R211K, P243A, V245K, D250E, Y271F, A272P, K277T, L282C, L283I, I293V  
H061873R16 H061873R16 None None   V35S, V60I, K122E, D123N, T200A, Q207E, R211K, V245K, A272P, K281R, L282C, L283I, R284K, V292I, I293V  
H105957R16 H105957R16 None None   V35T, E40D, K49R, V60I, K122E, D177E, I178M, Q207E, R211K, V245Q, D250N, A272P, K277R, T286A, I293V, E297K, A304E, K311R  
J069612R16 J069612R16 None None   K11T, K20R, V21I, V35T, T39K, K122E, D123N, K173S, Q174R, D177E, V179I, T200K, I202V, Q207A, R211T, V245Q, D250E, V276I, L282C, I293V  
J080118R15 J080118R15 None None   V21I, V35T, V60I, K173L, Q174K, V179I, I202V, Q207A, R211G, V245Q, E248D, A272P, K277R, K281R, T286A, I293V, P294A  
J105178R16 J105178R16 None None   V35T, E40D, K49R, V60I, K122E, D123S, K173S, I178L, V179I, T200A, Q207A, F214L, V245Q, K281R, T286A, E291D, I293V, P294T, E312D  
J105550R16 J105550R16 None None   V35T, K49R, V60I, V118I, D121Y, K122E, I159V, E169D, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V  
K068977R15 K068977R15 None None   V35T, T39A, S48T, V60I, A98S, D121Y, K122E, Q174L, D177E, T200I, Q207E, R211K, V245Q, A272S, K277R, T286A, E291D, V292I, I293V