Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Ragonnet-Cronin (2016)
Title A direct comparison of two densely sampled HIV epidemics: the UK and Switzerland.
Citation Sci Rep
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 2262
NumPts 2262
Subtype B, C, A, CRF01_AE, CRF22_01A1, B + C


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Page 1   listing Isolate 1 to Isolate 100 from Total 2262 Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
CH100 CH100 Unknown Unknown   K49R, A98S, K122E, I135T  
CH120 CH120 Unknown Unknown M41L, T215Y  T39A, K49R, V60VI, R83K, Q174QH I37IV 
CH15 CH15 Unknown Unknown   E6D, K11T, V35T, T39K, K43KE, D121Y, K122E, D123DG, I142IV, K173A, Q174KN, D177E, Q207D, V245E, K275KQ, T286A, E291D, V292I, I293V, P294T, E297EK, E312S, G335D  
CH168 CH168 Unknown Unknown   K49R, R83K, Q197QR  
CH175 CH175 Unknown Unknown   K49R, R83K, K122E, K173KT, I178X, Q207K, R211S  
CH217 CH217 Unknown Unknown   K49R, R83K, D123N, Q197L, E204K  
CH239 CH239 Unknown Unknown   V35M, R83K, K104KQ, K122E, D123N, I135MT, D177G, Q197E, I202V, Q207QH, R211G, A272P, I329V, Q334L  
CH277 CH277 Unknown Unknown   K49KR, V60VI, R83RK, K122E, I135T, R211RK, K311KR, E312EQ, V317VA, D324E, I329IV  
CH297 CH297 Unknown Unknown   R83K, K122E, I135T, T200A, R211K, K249E, A272T, E297K, V317A, I329V  
CH3 CH3 Unknown Unknown   K11E, V35T, T39A, E40D, V60I, D121H, K122E, D123S, I135T, K173S, Q174R, V179I, Q207T, R211K, V245M, T286A, E291D, V292I, I293V, P294T, E312D, I326V, G335D, M357K, G359S, T369A, A371V, I375V, T377M, E399D, A400I T58TA 
CH318 CH318 Unknown Unknown  V179D V35T, E36A, T39D, S48T, K122A, D123S, I135R, S162C, K166R, K173KT, T200A, Q207E, R211RK, F214L E29K 
CH342 CH342 Unknown Unknown M184V, N348I  V35T, E36A, T39D, S48T, K122E, D123DN, S162A, K166KR, K173A, D177E, T200A, Q207E, P243T, V245Q, D250DE, A272P, T286TA, E291D, V292I, I293V, Q334H, G335D, R356K, G359T, K366R, A376AS, T377M, T386TA, K390R, A400T  
CH40 CH40 Unknown Unknown   V35T, V60I, D121Y, K122E, I135T, K173AS, Q174K, V179I, Q207A, R211S, D250E, K281R, E291D, V292I, I293V, P294T, E297K, K311R, E312D, A327V, G335D  
CH53 CH53 Unknown Unknown M41L, D67N, K70R, T215Y, K219Q  T39A, V60I, K104N, K122E, K166R, I202V, L210F  
CH56 CH56 Unknown Unknown D67N, K70R, K219Q  E138A, S162C, G196E, E204D  
UK_A1_16 UK_A1_16 Unknown Unknown   K11T, V35T, E36D, T39TR, K122E, D123S, A158S, K173S, Q174K, Q207A, R211S, V245M, E248D, A272P, T286A, E291D, V292I, I293V, P294T, K311R, I326V  
UK_A1_21 UK_A1_21 Unknown Unknown   E6D, V35T, V60I, K122E, D123S, I135T, K173A, Q174K, D177E, I178M, V179I, Q207E, R211K, V245E, D250E  
UK_A1_24 UK_A1_24 Unknown Unknown   K11T, V35T, E36D, T39R, K122E, D123S, A158S, K173L, Q174K, D177E, Q207A, R211S, F214L, V245M, E248D, A272P, K281R, T286A, E291D, V292I, I293V, P294T, I326V, Q334P, G335D, R356K, M357K, R358G, G359S  
UK_A1_41 UK_A1_41 Unknown Unknown   K20KR, V35T, T39L, E40ED, V60I, K122KAET, A158AS, Q174QK, D177E, Q207E, R211RK, F214L, V245E, D250E, T286A, K287KR, V292T, I293IV, P294AT, L295LM, K311KR, G335D K173*S 
UK_B_100 UK_B_100 Unknown Unknown   K49R, R83K, A98S, D123E, I135T, T200A, V245E, A272P, K277R, E297R, Q334R, G335D, G359S, K366R, T377S, V381I, K390R  
UK_B_1000 UK_B_1000 Unknown Unknown   V35M, R83K, K122E, I178IM, Q207E, R211G, A272P, K277R, T286A, E297K  
UK_B_1008 UK_B_1008 Unknown Unknown   K20R, V35I, V60I, R83K, K101R, I135T, I178M, A272P, T286A, I329V  
UK_B_1009 UK_B_1009 Unknown Unknown   P4S, V10VI, K20R, V35T, T69TS, D123E, S162Y, D177E, R211K  
UK_B_1018 UK_B_1018 Unknown Unknown   K20R, V35I, V60I, R83K, I135T, T165I, A272P, V276I, K277R, T286A, I329V  
UK_B_1025 UK_B_1025 Unknown Unknown L210W, T215S Y188L V60I, D123E, I135T, I178IMV, G196E, I202V, R211RK, V245M, A272P, K277R, L283LI, I293V, T296S, E297KR, Q334L, K350R, R356RK, T386I, K390R  
UK_B_1026 UK_B_1026 Unknown Unknown   I31IV, S68G, V90I, K122P, S162C, Q174QR, N175NY, D177E, V179I, T200AE, Q207QR, R211KQ, K277R, T286A, P294PS, E297K, I326V, Q334L, V365I  
UK_B_1041 UK_B_1041 Unknown Unknown  A98AG V60VI, W88WC, K103KR, D123E, I202IV, R211RK, F214L, V245M, A272P, K277R, I293IV, V317A I142ILPT 
UK_B_1064 UK_B_1064 Unknown Unknown   V35I, R83K, K166KR, G196E, R211RK, A272P, K277R, T286A, I293IV, G333E  
UK_B_1070 UK_B_1070 Unknown Unknown M41L, M184MV, L210LW, T215Y  D123E, I142IV  
UK_B_1079 UK_B_1079 Unknown Unknown  V179D K11E, S68G, T69N, D121H, K122E, D123G, I135IT, G196E, R211T, A272P, K277R, A288S, I293V, P294A, E297K, I309V, V317A  
UK_B_1113 UK_B_1113 Unknown Unknown M184V V108I R83RK, V106VI, K122P, D123E, K166R, E169D, I178L, V179I, T200A, A272P, K277R, T286A, V292I  
UK_B_1153 UK_B_1153 Unknown Unknown   A98S, D123E, I142T, S162DN, D177E, I178M, I195IL, E204EK, Q207X, R211S, V245M, A288S, V292VI, I293IV, D324DE, Q334S  
UK_B_1182 UK_B_1182 Unknown Unknown   T39A, K122E, D123N, I142V, K173KQ, D177DE, I178M, G196GE, Q207QKR, R211AEKT, A272P, E297EV, K311KR, V317VA  
UK_B_1210 UK_B_1210 Unknown Unknown   K11Q, S68SG, A98AS, D123E, K166KR, I178M, Q207QR, R211K, K223T, A272P, K281R, V292I, E297Q, H315Y, D324E, Q334E, I341IV, M357T, K366R P119PL, N137S 
UK_B_1215 UK_B_1215 Unknown Unknown   K104N, I135T, R211K, F214L, V245E, A272P, K277R, T286A, I293V, E297K, K311R, V317A, P321PS, Q334L  
UK_B_1225 UK_B_1225 Unknown Unknown   E6ED, K20R, K122E, D123S, I135T, I178M, T200I, R211K, V245Q, I329L  
UK_B_1229 UK_B_1229 Unknown Unknown   V35VI, K122KR, D123DE, S162C, K173R, Q207E, F214L, V245L, A272P, K277R, V317A, D324E, I329IV, Q334E P95PL 
UK_B_1274 UK_B_1274 Unknown Unknown   K104R, I135IRT, T200A, R211K  
UK_B_128 UK_B_128 Unknown Unknown   E6EK, T7TA, K43KR, A98S, K101KRT, K102KQ, K104KR, K122E, D123T, E169D, D177DE, R211X, V245VI, E248ED, A272P, K277KR, T286A, I293V, E297K, I329V, Q334L, F346FL, M357T, V365VI  
UK_B_1295 UK_B_1295 Unknown Unknown   K20R, V35I, K103Q, K122A, I135T, I142V, D177E, R211K, V245L, A272P, I293V, I326V, K385R, T386I  
UK_B_131 UK_B_131 Unknown Unknown   K20R, K103R, K122KE, S162C, T200E, R211RK, V245E, A272P, K275Q, V276I, T286A, P294Q, I329L, G335X  
UK_B_1332 UK_B_1332 Unknown Unknown  K103N K49KR, R83RK, D123E, G196E, R211K, K277R, L283I, I293V, D324E, Q334L, G359GS, I382L, K390R  
UK_B_1360 UK_B_1360 Unknown Unknown   R83K, S162Y, R211K, A272P, K277R, G333E  
UK_B_1369 UK_B_1369 Unknown Unknown   V35L, P55A, V60I, V118I, D123E, S134C, T139R, K166R, R211K, F214L, V245E V179Q 
UK_B_168 UK_B_168 Unknown Unknown   K103Q, K122E, I135R, S162C, T200A, R211K, I326V, I329V  
UK_B_216 UK_B_216 Unknown Unknown  K103N, P225PH K22KR, V35IT, K49KR, V60VI, R83K, I178IL, V179VI, R211K  
UK_B_229 UK_B_229 Unknown Unknown   V35T, K122E, D123N, I135T, S162A, P176PS, D177EG, I202V, R211K, V245T, A272P, K277R, I293V, E297A, Q334E  
UK_B_237 UK_B_237 Unknown Unknown   K49R, I50V, V60I, D121H, K122E, I135T, E169D, I202V, Q207E, R211K, A272P, L283I, E297K, L310I, V317A, I326T, I329V, G333E, Q334L  
UK_B_250 UK_B_250 Unknown Unknown   G45GE, K49KR, V106VI, D123E, I135IT, I142IV, S162C, E169D, D177E, I178ILM, T200A, V245T, I257L, T286A, A288S, V292I, I293V, E297A, P313T, V317A, I329L, G333DE, Q334QH, R356RK  
UK_B_297 UK_B_297 Unknown Unknown   V35I, S48T, I135T, T200A, Q207E, R211K, F214L, V245Q, I293V, I329L  
UK_B_327 UK_B_327 Unknown Unknown   K20KR, K49R, V60I, D123E, I135T, S163A, K166T, T200K, K201R, I202V, R211K, E224D  
UK_B_332 UK_B_332 Unknown Unknown   T27S, K122E, D123G, I135T, S162C, E169D, D177E, Q207E, V245T, K277R, T286A, V292I, I293V, E297A, K311R, I326L  
UK_B_357 UK_B_357 Unknown Unknown   V118VI, K122E, S162C, E169EG, T200TA, Q207E, R211K, F214L, A272P, K281R, R284K, V292VI, I329IL  
UK_B_373 UK_B_373 Unknown Unknown   E6EK, S48ST, A98S, D123E, D177E, T200TK, Q207K, R211S, V245M, A288S, V292VI, I293V, Q334L  
UK_B_426 UK_B_426 Unknown Unknown   K11R, V60I, R83K, K103R, D121Y, K122E, D177E, T200I, S251I  
UK_B_447 UK_B_447 Unknown Unknown   I142T, E169D, Q174K, G196E, Q207AV, R211K, F214L, V245VE  
UK_B_457 UK_B_457 Unknown Unknown   K20KR, V35I, V60VI, I142V, K173KR, Q207E, R211K, A272AP, T286A, I293IV, E297K, E312A, Q334L, R356RK  
UK_B_505 UK_B_505 Unknown Unknown   R83K, T165TI, K173KR, T200A, Q207E, V245E, K277R, I293V, E297Q, I329L  
UK_B_517 UK_B_517 Unknown Unknown   K20R, S162C, I178L, V189I, T200A, V245K, K277R, T286A, I293V, E297A, K311R, S322T, I329L  
UK_B_530 UK_B_530 Unknown Unknown   V35I, D121Y, K122E, I135L, S162C, E169D, K173E, I178L, E204K, R211Q, V245I, K277R, Q278E, A288S, I293V, I326V  
UK_B_536 UK_B_536 Unknown Unknown   E53D, K101R, I142V, S162Y, T200I, A272P, T286A, T296S, K311KR, Q334L  
UK_B_581 UK_B_581 Unknown Unknown   K122E, D123DN, I142T, T200E, E204D, Q207K, R211K, K277R, I293V, E297K, K311R, D324E, I329L, G333D, Q334G, G335C  
UK_B_59 UK_B_59 Unknown Unknown   I50V, R83K, S162C, K249Q, S251I Q258QPR 
UK_B_595 UK_B_595 Unknown Unknown  V108VI V35L, K122P, D177E, V179I, A272P, K277R, T286A, P294ST, E297K, I329V, G333E, Q334H E224V 
UK_B_648 UK_B_648 Unknown Unknown   S48T, K122E, D123N, I135T, R211K, I244V, V245K, A272P, K277R, I293V, E297A, S322T, P345L, M357I, A360T, T386I, K390R  
UK_B_662 UK_B_662 Unknown Unknown   K20KR, V60VI, A98S, D177E, Q207E, R211K, V245K, A272P, K277R, T286A, E297KT, I329L, G333E, G335N, M357V  
UK_B_666 UK_B_666 Unknown Unknown   V35I, E36K, K46E, S48P, S68T, D121H, K122E, P176PS, D177E, G196E, T200I, K249Q, T286A, I293V, E297T, Q334L I37IS, M41I, I47R, E53K 
UK_B_673 UK_B_673 Unknown Unknown   R83K, K122E, I135T, I178M, V179I, E194K, I195L, G196E, T200A, I202V, Q207R, R211K G152R 
UK_B_687 UK_B_687 Unknown Unknown   D123EK, S162A, D177E, D192DN, Q207K, R211K, K277R, E291D, I293V, E297R, E312K, I326V  
UK_B_713 UK_B_713 Unknown Unknown   K20R, D123E, S162C, K166R, D177DE, R211G, E248N  
UK_B_719 UK_B_719 Unknown Unknown   K20R, K122E, D123N, I135IT, T139A, I142T, R211K, F214L, E224K, V245I, I293V  
UK_B_728 UK_B_728 Unknown Unknown   K49R, V60I, R83K, K103R, I135T, T200A, E204D, R211K, V241VI, T286A, A288S, V292I, E297K, I329L, G333E, Q334H, M357T, V365I  
UK_B_752 UK_B_752 Unknown Unknown   K102KQ, K122E, I135T, S162C, I195IT, T200TA, I202IV, E204ED, R211RK, V245M, A272P, K277KR, I293V, V317A, Q334E, P345Q, K390R  
UK_B_776 UK_B_776 Unknown Unknown   E6K, V35M, K101Q, K122E, I135R, S162C, I202V, Q207E, R211K  
UK_B_797 UK_B_797 Unknown Unknown   I135R, I142V, S162A, D177E, H208Y, R211K  
UK_B_814 UK_B_814 Unknown Unknown   K11Q, K49R, D121Y, K122E, I135T, E169D, D177E, T200I, Q207D, R211K, V245E, K277R, I293V, P294A, I329V, Q334L  
UK_B_822 UK_B_822 Unknown Unknown   V35T, V60I, D123E, I135T, T165TI, I178M, Q207E, R211K, V245K, A272P, I293IV, I329V  
UK_B_851 UK_B_851 Unknown Unknown T215A  S68G, K122E, D123E, I135T, A158S, K166R, D177E, T200I, R211K, V245M, K277R, A288S, I293IV, E297A, S322T, I341V, R358RK, K385R, K390R  
UK_B_861 UK_B_861 Unknown Unknown   K11A, V60I, K122E, D123G, I135T, E138A, I142V, R172RK, T200A, Q207K, A272P, K281R, T286A, V292I, I293V, E297R, I326V, M357T, T369A, A376T, T377Q  
UK_B_867 UK_B_867 Unknown Unknown   I31V, S68G, V90I, K122P, S162C, D177E, V179I, T200A, E204ED, R211RKQ, K277R, T286A, I326IV, V365I  
UK_B_874 UK_B_874 Unknown Unknown   V35I, K166R, D177X, T200K, I202V, R211Q  
UK_B_877 UK_B_877 Unknown Unknown   V35T, A98S, K122KE, R211K, A272P, K277R, T286A, E297K, R307K, P313PS, H315N, D324E, Q334L, K366R  
UK_B_892 UK_B_892 Unknown Unknown   K20R, D121DN, K122KE, D123S, F171Y, Q207E, R211K, V245K, D256E, I257L  
UK_B_93 UK_B_93 Unknown Unknown   V8I, V60I, D123E, K166R, D177E, V179T, G196E, I202V, E204K, R211K, V245M, A272P, L283I, P294Q, I329L, K350R, A360T, T377R  
UK_B_940 UK_B_940 Unknown Unknown   K122E, E169D, K173R, T200S, Q207E, V245K  
UK_B_992 UK_B_992 Unknown Unknown   V60I, I142V, R211K, F214L, K277R, T286A, I293V, E297K, D324E, I329L, Q334D, T338TA, A360T  
UK_C_129 UK_C_129 Unknown Unknown   P4PS, V35I, T39E, S48T, V118I, K122E, D123NS, I135R, K173T, Q174KR, D177E, T200A, I202IV, Q207E, R211K, F214L, V245Q, A272P, I274IV, K275R, Q278N, E291D, V292I, I293V, A304E, Q334HN, G335D  
UK_C_2 UK_C_2 Unknown Unknown   V35T, T39A, E40D, S48T, D121H, K122E, T165I, E169Q, K173AT, Q174KR, D177E, T200A, I202V, R211K, F214L, P243T, V245Q, A272P, K275R, K277R, Q278HY, T286A, E291D, V292I, I293V, I329V, Q334F, G335D  
UK_C_236 UK_C_236 Unknown Unknown   P4S, V35T, E36A, T39E, S48T, V60I, V118I, K122E, I142T, M164I, K166R, K173A, Q174K, D177E, I178L, G196E, Q197K, T200A, I202V, Q207D, R211K, F214L, V245Q, A272P, T286A, E291D, V292I, I293V, D324DE  
UK_C_237 UK_C_237 Unknown Unknown   V35T, T39E, E40ED, S48T, D121H, K122E, S162A, K173T, D177E, I178ILM, G196E, T200A, E203D, E204Q, Q207D, R211K  
UK_C_26 UK_C_26 Unknown Unknown  G190GE P4T, V35T, E36A, T39E, S48T, K122E, D123G, P170PS, K173A, D177E, V189VI, T200A, I202V, Q207N, L210F, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, E297A, A304E, P321PS, D324E, G335D, F346FL, R356K, M357R, G359T Y144YH 
UK_C_288 UK_C_288 Unknown Unknown   V35IM, S48T, K101KQ, K122E, D123S, I135T, I142IV, S162C, K173A, Q174QK, D177EG, T200A, Q207E, R211K, V245KQ, D250DE, A272P, K277R, E291D, V292I, I293V  
UK_C_334 UK_C_334 Unknown Unknown  A98AG, K103KN K20R, V35T, E36A, T39E, S48T, V60I, V118C, K122E, D123N, K126KR, K166R, K173A, D177E, G196GE, T200A, I202V, Q207E, V245Q, A272P, K277ST, K281KR, T286A, E291D, V292VI, I293V  
UK_C_345 UK_C_345 Unknown Unknown   V35T, E36A, T39E, S48T, V60I, K173T, D177E, T200A, Q207D, R211K, V245Q, A272P, K277R, T286A, I293V, P294S, S322T  
UK_C_346 UK_C_346 Unknown Unknown   P4S, K20R, V35T, T39K, S48T, V118I, K122KE, E138A, I142V, K173I, Q174K, T200A, Q207E, R211K, F214L, V245Q, D250E, A272P, K277R, E291D, V292I, I293V, P321PS, I326V, Q334H, G335D E79EK, E302K 
UK_C_370 UK_C_370 Unknown Unknown   V35T, T39TAIV, K102KQ, K122E, D123S, S162C, S163SC, T165TI, K173AT, D177E, T200A, Q207A, R211K, V245Q, D250E, A272P, I274V, E291D, V292I, I293V, I329L, Q334N, G335D, R356K, M357R, G359S E29D 
UK_C_374 UK_C_374 Unknown Unknown   T27S, V35T, E36A, T39D, S48T, V60I, D121H, K122E, E138A, I142V, K173T, Q174K, D177E, T200E, Q207E, R211K, V245Q, E248D, A272P, K275R, Q278N, T286A, E291D, V292I, I293V, I329V, G335D, R356K, M357V, G359T  
UK_C_376 UK_C_376 Unknown Unknown   V8I, K22KR, V35T, E36A, T39E, E40D, S48T, V60VI, K122E, D123N, I135T, Q174E, D177E, T200A, Q207E, R211K, V245VA, D250E, S251D  
UK_C_403 UK_C_403 Unknown Unknown   V35T, T39Q, S48T, V60I, K122E, D123S, E138A, K173A, Q174N, D177E, I178IV, T200A, R211K, I244V, D250E, A272P, K281R, T286A, E291D, V292I, I293V, I326V W229WR 
UK_C_44 UK_C_44 Unknown Unknown   V35T, E36A, T39DE, S48T, V60I, K122KE, D123EG, I142IV, Q145QE, A158AS, K166KR, K173A, D177E, T200A, Q207N, R211K