Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Delatorre (2017)
Title High HIV-1 diversity and prevalence of transmitted drug resistance among antiretroviral-naive HIV-infected pregnant women from Rio de Janeiro, Brazil.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 87
NumPts 87
Subtype B, F, C, CRF02_AG, B + F, Unknown, B + C


Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
12BRRJGN01 12BRRJGN01 None None   V35IT, K49R, K122E, D123K, I132IV, S134SN, I135AV, S162C, E169D, K173A, Q174K, D177E, Q207E, R211K, A272P, T286A, E291D, V292I, I293V, E297T, S322A  
12BRRJGN02 12BRRJGN02 None None   V35I, I178L, G196E, F214L, V245VM, E248EDKN, D250DEKN, A272P, K277R, L283LI, I293V, E297R, K311R, V317A  
12BRRJGN03 12BRRJGN03 None None D67DN  V35T, K122Q, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, Q207K, R211T, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, E297A, V317A, S322T, E328EK, Q334S M41MK 
12BRRJGN04 12BRRJGN04 None None   K103KR, V118I, I135T, D177E, T200A, R211K, F214L, V245M, A272P, V276I, I293V, I309L, A327V, Q334L  
12BRRJGN05 12BRRJGN05 None None   D123E, S162N, D177E, Q207N, R211K, E248D, D250E, A272P, P294T  
12BRRJGN06 12BRRJGN06 None None   P4S, S68G, D123E, I135IT, T165I, E169ED, I178L, G196E, T200TI, V245M, A272P, A288S, I293V  
12BRRJGN07 12BRRJGN07 None None   I31V, V35I, E36K, T39N, K43RT, K46R, I50N, E53X, D123E, K166R E28IL, E29H, K30GR, K32Y, A33Y, L34P, I37R, C38L, E40S, M41R, E42N, G45A, I47Y, S48K, K49A, P52H, N54S, P55N, Y56L 
12BRRJGN08 12BRRJGN08 None None   D123E, I135T, K166R, D177E, I178M, T200I, R211K, A272P, K277R, T286A, P294Q, E297A, I326V, I329V, Q334Y, Y339F  
12BRRJGN09 12BRRJGN09 None None   K20R, I135M, S162H, Q174QEK, P176PT, T200A, I244V, A272P, K277R, A288S, E297K, D324DE, I329L, G335D  
12BRRJGN10 12BRRJGN10 None None   K49R, V60I, I135T, E169D, Q174H, G196E, R211K, E248D, A272P, K277R, L283I, I293V, P294S, E297A, E312*, Q334L  
12BRRJGN11 12BRRJGN11 None None   V35T, E36D, T39L, V60I, T69S, V90I, K122P, I135L, S162A, K173I, Q174K, D177E, T200A, Q207E, R211K, F214L, V245Q, K275Q, T286A, E291D, V292I, I293V, P294T, L295M, E297K, A304E, E312V, S322T, I326V  
12BRRJGN12 12BRRJGN12 None None   K20R, V35T, T39M, V60I, P170S, F171Y, T200I, R211RK, V245M, E248ED, I293V, S322T, Q334G  
12BRRJGN13 12BRRJGN13 None None D67N, K219Q  T39TK, D121H, K122E, I135T, K173Q, I178V, I202V, E204K, V245VE, T286A, A288T, I293V, E297A K201V 
12BRRJGN14 12BRRJGN14 None None   K20R, V90I, A98S, K122E, K277R, T286A, I293V, Q334R, G335D  
12BRRJGN15 12BRRJGN15 None None   V35I, S48T, K49R, K122Q, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, D192N, Q207E, R211K, V241VI, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, E297V, V317A, S322T, Q334N E302EK 
12BRRJGN16 12BRRJGN16 None None  K101E, G190A V35T, T39A, D123E, E138G, K166KQ, E169D, K173A, Q174K, N175NY, D177DE, T200AV, I202IV, Q207N, R211K, V245Q, E248N, A272P, K277R, L283I, T286A, E291D, V292I, I293V, E297A, S322T, G333E, Q334N  
12BRRJGN17 12BRRJGN17 None None   E6K, T7P, S68G, K122E, D123N, I135T, T165I, T200I, R211K, A272P, I293V, E297N  
12BRRJGN18 12BRRJGN18 None None   V90VI, K104N, I135T, K173Q, F214L, D218DN, V245M, E248N, A272P, T286TA, I293V, E297A, A304AE, K311KR, G333E, Q334Y S268SG 
12BRRJGN19 12BRRJGN19 None None   V35T, E36A, T39D, K43R, S48T, D121DY, K122KE, D123DE, I135T, S162C, I178IL, R211K, V245Q, A272P, K277KR, T286A, E291D, V292I, I293V, E297R, V317T, A327V, I329V, G335D  
12BRRJGN20 12BRRJGN20 None None   K11Q, K102R, D121H, K122E, D123G, I135T, K173Q, D177E, I178L, G196R, T200A, R211K, F214L, V245M, A272P, K277R, L283I, I293V, P294T, G333E, G335S  
12BRRJGN21 12BRRJGN21 None None   K122E, D123N, I135T, I142V, R211S, V245VM, L283I, I293V, E297V L279LS 
12BRRJGN22 12BRRJGN22 None None K70KR  K122R, D123E, I135T, S162C, D177E, T200A, I202V, E204D, Q207E, V245M, A272P, T286A, I293V, P294S, S322A, D324E, G333GE, Q334GV E29EK, Y271YC 
12BRRJGN23 12BRRJGN23 None None   V35T, T39N, D123E, I135T, S162C, I178L, Q207N, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297T, P321S, S322T, D324E  
12BRRJGN24 12BRRJGN24 None None D67N, T69D Y188L V60I, I135T, S162G, K166R, K173R, D177DE, G196E, E248D, A272P, K277R, I293V, P294T, E297A  
12BRRJGN25 12BRRJGN25 None None   K20R, K122E, I135T, E169D, D177E, I202V, R211K, F214FL, A272P, I293V, G333E, Q334H L26LP, E79EK 
12BRRJGN26 12BRRJGN26 None None M41L  K122E, D123N, I135T, E138A, N175H, D177E, T200A, R211RK, V245K, A272P, I293V, G333D  
12BRRJGN27 12BRRJGN27 None None   I142IT, K173R, R211K, E248D, D250E, P294T  
13BRRJGN28 13BRRJGN28 None None   E6D, R83RK, D123E, D177E, R211K, V245VM, E248EK, A272P, K277R, Q278H, K281R, R284K, T286A, I293V, P294A, E297A, A304E, I329L, Q334N, G335S  
13BRRJGN29 13BRRJGN29 None None   K20R, K122E, I135T, E169D, A272S, K277R, L283I, E297A, E312Q  
13BRRJGN30 13BRRJGN30 None None  A98G P4S, K20R, S162C, D177E, I178M, V179I, G196E, T200A, R211RK, F227Y, V245T, S251SI, A272P, L283I, E297R, I329L C38CG 
13BRRJGN31 13BRRJGN31 None None   I135IM, R211K, V245K, K277R, T286A, I293V, P294T, Q334L, Y339F  
13BRRJGN32 13BRRJGN32 None None   K122E, I135IATV, I142V, S162C, R172RK, T200A, Q207E, L210LF, V245I, A272P, I274V, A288S, I293V, E297R, K311R, D324E, I329IL, G333E, Q334L  
13BRRJGN33 13BRRJGN33 None None   V35S, V90I, A98S, D121H, K122E, A158S, D177E, I178V, T200I, Q207E, R211K, V245E, K281R, L283I, I293V, P294T, I329V, Q334Y  
13BRRJGN34 13BRRJGN34 None None   K20R, A98S, K122E, D123N, I178M, E203D, T240A, V245I, A272P, I293V, G333D, Q334N  
13BRRJGN35 13BRRJGN35 None None   V35T, T39L, V60I, K102KR, V118I, D177E, T200K, F214L, A272P, E297K, I329L E138E*AS 
13BRRJGN36 13BRRJGN36 None None   K49R, D123E, I135T, D177E, I178IM, P243PS, V245K, A272S, T286A, T290TS, I293V  
13BRRJGN37 13BRRJGN37 None None   K20KR, V35T, V60I, I135V, Q174K, G196E, F214L, V245X, K249KR, A272P, V276I, K281R, L283LI, I293V, E297K L193M 
13BRRJGN38 13BRRJGN38 None None   S48T, K49KR, K64KR, D121H, K122E, I135T, K173T, D177E, V179I, T200TA, R211K, A272S, T286P, I293V, E297A, I326V, I329L, Y339F  
13BRRJGN39 13BRRJGN39 None None   K102Q, K122KAET, D123S, I135T, S162Y, D177E, T200A, R211K, F214L, V245T, K277R, A288AS, I293V, G335D P247PS 
13BRRJGN40 13BRRJGN40 None None   E6ED, K64KR, I135T, I142IV, D177E, I178L, V179I, I202V, I293V, I329L  
13BRRJGN41 13BRRJGN41 None None   V35T, K49R, V60I, I135T, S162C, E169D, K173A, Q174K, T200A, Q207A, R211K, V245Q, E248D, V261VI, A272P, T286A, E291D, V292I, I293V, E297T, V317A E308W, I309S 
13BRRJGN42 13BRRJGN42 None None   V35T, T39M, D123E, I142V, K173A, Q174K, D177E, Q207A, R211K, P243Q, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297P, G333E, Q334P  
13BRRJGN43 13BRRJGN43 None None   V118I, K122P, I135T, P176KQ, G196E, T200A, F214L, E248N, D250E, A272S, L283I, K287KR, I293V, K311R, P313Q  
13BRRJGN44 13BRRJGN44 None None  V179D, G190A E6D, V35T, K49KR, V90VI, A98S, K103R, E169D, K173E, Q174R, I178IL, T200A, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, V292I, I293V, E297K, D324E, G335R  
13BRRJGN45 13BRRJGN45 None None   K122KE, D123E, I135T, I142T, T165I, K173KE, Q207A, V245K, A272P, K277R, I293V, D324DE, I326IV, Q334E  
13BRRJGN46 13BRRJGN46 None None   I135T, S162C, D177DG, R211K, Y271YF, A272P, K277KR, T286A, I293V, E297A, Q334K  
13BRRJGN47 13BRRJGN47 None None   K13KR, V35T, T39TIM, V60I, K122V, I135L, S162H, K173T, Q174K, D177E, T200A, R211K, V245Q, E248D, A272P, K277KN, T286A, E291D, V292I, I293V, E297T, I329V, Q334L  
13BRRJGN48 13BRRJGN48 None None   I31L, V35VIM, T69N, V90VI, D121DH, K122KE, D123DE, I142IT, D177DG, I178IM, V179A, I202IV, H208HY, R211EKQ, V245L, E291D, V292I, I293V, E297K, S322T D186DG, K201KE 
13BRRJGN49 13BRRJGN49 None None   V35IT, T39E, S48T, V60I, D121Y, K122E, D123E, I135R, T139TS, I142IV, K173T, D177DEG, I178IM, T200A, Q207A, R211K, V245Q, A272P, K281R, T286A, E291D, V292I, I293V, P294PS, E297A, Q334D  
13BRRJGN50 13BRRJGN50 None None   I50V, I142V, K173Q, T200E, Q207HN, R211K, V245I, I257L, T286TA, A288S, I293IV, E297A  
13BRRJGN51 13BRRJGN51 None None   E6D, V118I, K122E, I135R, T200I, I202V, F214L, V245E, K277R, P294Q, Q334E  
13BRRJGN52 13BRRJGN52 None None   V8I, K122E, I142V, I178L, Q197L, Q207H, R211K, V245M, E248D, V261VG, A272P  
13BRRJGN53 13BRRJGN53 None None   I5V, E6N, K64R, D123E, I135T, S162C, S163T, Q174H, D177E, R211K, A272P, K277R, Q278H, I293V, E300Q, H315Y, E328Q, G333E, Q334H G51GV 
13BRRJGN54 13BRRJGN54 None None   E28G, V35M, T39M, K122E, S162C, P176S, T200A, E203D, A272P, T296S, V317A, Q334D  
13BRRJGN55 13BRRJGN55 None None   K82R, A98S, V118I, D123E, I135R, I142IT, D177E, I202V, F214L, V245M, A272P, V292I, I293V, E297K, I329L  
13BRRJGN56 13BRRJGN56 None None   E6ED, K20R, V35E, T39A, E40D, I135T, T139TA, I142K, I202V, R211K, F214L, A288AT, I293V, E297K, K311KR, S322T  
13BRRJGN57 13BRRJGN57 None None   K20KR, A98AS, I135T, I195IR, Q207D, A272P, K277KR, T286A, R307RK, I329L  
13BRRJGN58 13BRRJGN58 None None   V35IT, R83K, D121DN, K122E, I142V, D177E, T200A, Q207A, R211RK, Q278H, D324E, I329L  
13BRRJGN59 13BRRJGN59 None None   V118VI, K122KE, I135T, E138A, I142T, S162C, I202V, R211K, P243T, V245K, A272P, T286P, I293V  
13BRRJGN60 13BRRJGN60 None None   A98S, D123E, S162SN, D177DGNS, G196E, Q197K, V245M, A272P, K277R, A288S, V292I, I293V, E297K  
13BRRJGN61 13BRRJGN61 None None   V8I, V35T, V60I, K122AITV, I135T, P176T, T200TA, R211S, A272P D186DG, R199RS, K201KE 
13BRRJGN62 13BRRJGN62 None None   V35I, V106VI, D123E, I135T, I142V, S162SC, D177E, I202IV, R211KQ, V245VM, A272P, K277R, V292VIM, I293IV, P294V, E297R, I326V, I329L, Q334L  
13BRRJGN63 13BRRJGN63 None None   V35I, S48T, K49R, K122Q, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, D192N, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, E297V, V317A, S322T, Q334N  
13BRRJGN64 13BRRJGN64 None None   V35T, D123E, I135L, I142V, S162Y, E169D, K173A, Q174K, D177E, G196GR, T200A, Q207E, R211K, V245Q, P247A, E248D, D250E, A272P, K277R, T286A, E291D, V292I, I293V, E297A  
13BRRJGN65 13BRRJGN65 None None   K101Q, K122E, I135T, D177E, I178M, R211K, F214L, V245M, A272P, K277R, A288S, V292I, E297A, V317A, D320E, Q334L Y232YC 
14BRRJGN66 14BRRJGN66 None None   K32N, S162N, Q174R, V179I, T200V, I202V, R211K, V245M, D250E, A272P, I293V, Q334E  
14BRRJGN67 14BRRJGN67 None None   K122E, I135T, E169D, I178M, I202V, R211K, V245E, A272P, K277R, V292I, I293V, V317VM, G333GE, G335D  
14BRRJGN68 14BRRJGN68 None None   D17E, K43KR, R211K, V245KT, D250DE, K277KR, T286A, I293V, Q334L  
14BRRJGN69 14BRRJGN69 None None   K20R, I31IT, K122E, D123E, I135T, F171Y, T200I, I202V, R211T, F214L, V245K, D250DG, A272P, K277R, I293V  
14BRRJGN70 14BRRJGN70 None None  K103N K11KN, K20R, V60VI, D123E, I135T, I142V, S162A, I178L, V179VI, T200TA, K277R, P294T, E297P, V317A, K331KR, Q334L  
14BRRJGN71 14BRRJGN71 None None   V35T, T39R, D123E, S162C, Q207E, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297A W337G 
14BRRJGN72 14BRRJGN72 None None  K103N, Y318F K20R, V35I, V60I, K122E, D123N, I135L, G196E, T200A, R211RG, F214L, V245DEKN, K249KR, A272P, I293V, P294T, E297K, G333E, Q334H, G335C Y56YF 
14BRRJGN73 14BRRJGN73 None None   V35I, S48T, K102Q, D123E, I135T, S162C, R211K, A272P, K277R, I293V, E297A, Q334L, G335N  
15BRRJGN74 15BRRJGN74 None None   T39TA, K43KR, K122E, I135T, I142T, S162A, E169D, Q174QK, D177E, G196E, I202IV, Q207E, R211K, F214L, V245E, A272P, K277R, V292VI, I293V, E297K, K311R, D324E, I329L, G335D  
15BRRJGN75 15BRRJGN75 None None   S68G, D121DH, K122KE, D123DE, T165I, I178L, V179VI, I202V, Q207A, R211K, V245DEKN, D250E, A272AP, T286A, I293V, T296S, Q334E  
15BRRJGN76 15BRRJGN76 None None   V35T, T39TA, V60I, D123DE, I135V, I142V, E169D, K173A, Q174K, D177E, I178L, T200A, E204D, Q207D, R211K, V245Q, E248D, A272P, K277KR, K281KR, L283I, T286A, E291D, V292I, I293V, E297A, S322T, G333E, Q334H K122KEMV 
15BRRJGN77 15BRRJGN77 None None   V35T, E36A, T39E, S48T, K122E, D123N, I135R, K173AT, Q174QK, D177E, T200A, I202V, E204ED, Q207N, R211K, V241VI, V245Q, D250E, A272P, K277R, E291D, V292I, I293V, G335D  
15BRRJGN78 15BRRJGN78 None None   D121Y, K122E, I135T, S162C, D177E, R211RK  
15BRRJGN79 15BRRJGN79 None None  V179D V60I, S68G, D123E, I132V, S162C, I178L, I195L, R211K, V245M  
15BRRJGN80 15BRRJGN80 None None   P4PS, V35T, E36A, T39E, S48T, K122E, D123S, K173A, Q174K, D177E, I178M, T200A, Q207E, R211K, P243A, V245Q, A272P, E291D, V292I, I293V, D324E, Q334H, G335D  
15BRRJGN81 15BRRJGN81 None None   V35T, K49R, V60I, I135L, S162C, E169D, F171L, K173S, Q174K, G196V, T200K, E204EK, Q207E, R211K, E224EK, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297AV P97L, T128A 
15BRRJGN82 15BRRJGN82 None None   K11Q, D121H, K122E, D123G, I135T, K173Q, D177E, I178L, T200A, R211K, F214L, V245M, A272P, K277R, L283I, I293V, P294T, E308EK, G333E, G335S W252W*, G262GE 
15BRRJGN83 15BRRJGN83 None None   K20R, V60I, R83RK, K122E, I178L, T200A, Q207E, V245E, A272P, K277Q, E297K, L301I, I326V  
15BRRJGN84 15BRRJGN84 None None   K49R, D123E, I135V, S162C, E169D, K173A, T200A, Q207E, R211K, F214L, V245Q, A272P, K277R, T286A, V292I, I293V, E297A, I326V, G335D  
15BRRJGN85 15BRRJGN85 None None   V35T, K49R, V60I, I135L, S162C, E169D, K173V, Q174K, G196V, T200K, Q207E, R211K, E224EK, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297A  
15BRRJGN86 15BRRJGN86 None None   E6D, V35IM, K49R, V106VI, I135V, S162C, E169D, K173I, Q174K, T200A, Q207E, R211K, F214L, V245Q, S251N, A272P, K275R, V276I, Q278N, T286A, I293V, E297A  
15BRRJGN87 15BRRJGN87 None None   E6K, V35T, T39D, K43R, S48T, V60I, K122E, D123N, I135T, K173A, D177A, T200A, Q207E, R211K, V245Q, A272P, K277R, E291D, V292I, I293V, G335D