Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Pessoa (2015)
Title Enhanced detection of viral diversity using partial and near full-length genomes of human immunodeficiency virus Type 1 provirus deep sequencing data from recently infected donors at four blood centers in Brazil.
Citation Transfusion
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 42
NumPts 42
Subtype B, F, CRF70_BF, A, D, C, CRF47_BF


Clinical IN Isolates

10BR_MG007 MG007 None   T97A E10D, V31I, L45V, M50I, Q53R, L74I, L101I, S119T, E157Q, G163E, I200T, V201I, K211R, S255N, D256E, R269K  
10BR_MG010 MG010 None    E11D, S17N, A23V, L28I, P30A, M50I, I72V, A91T, L101I, T124A, K136Q, V165I, V201I, T206S, L234V, S283G  
10BR_MG017_2 MG017_2 None    F26Y, V31I, S39C, I72V, I84L, L101I, T124A, T125A, V165I, V201I, L234I, D253E, N254D  
10BR_MG029 MG029 None    K14KR, S17SN, L28LIM, V31VI, L45LI, I60IM, I72IV, L101LI, K111KT, S119SPRT, T122I, T124TA, T125A, I135IV, K156KN, F181FL, V201I, D207N, D256E E96EK, L102LI, C130C* 
10BR_MG034 MG034 None    E11A, S17N, R20K, L28I, I72V, T122I, F181L, K188R, S195T, V201I, I203M, I220L, S255R  
10BR_MG035 MG035 None   L74M, V151I S17N, M50I, I72V, I113L, S119P, T124N, T125V, G193D, S195T, T218I, S255N, D278S  
10BR_PE001 PE001 None    E10D, I72V, V201I, T218I  
10BR_PE010 PE010 None    E11D, S17T, T122I, T124N, K211Q, S230SN, L234LI, A265AV, R269RK R228RK, G245GS, G272GR 
10BR_PE018 PE018 None    G4E, E11D, V31I, M50T, D55N, A91S, L101I, T112V, S119A, T124N, K136Q, M154I, E157K, K173R, V201I, S283G D25N, E48K, E85K, G149E, D167N, E246K 
10BR_PE029 PE029 None  G140GS E92K E10D, D41DN, I72V, T125V, G134GR, I182V, K211R, T218S, S230N G82GR, G94R, G106GR, R107RK, W108W*, G118GS, W131W*, W132W* 
10BR_PE034 PE034 None    E11D, A21T, S24G, D25E, I72V, T124A, T125A, V126L, T206S, I208L  
10BR_PE056 PE056 None  E138K  G4E, W19*, V37I, D41N, A49P, D55N, G59E, T124N, W131*, W132*, G134K, M154I, E157K, R166K, D256E E35K, G52R, G70R, G82R, G197E, R224Q 
10BR_PE091 PE091 None   V151I M22L, T124A, T125A, V126L, I135V, D167E, T218I, L234I  
10BR_PE097 PE097 None    D6E, A23V, S24G, S39C, I72V, V201I, K211R, K215N  
10BR_PE098 PE098 None    E11D, L28I, S39C, I72V, Y99F, L101I, S119G, T122I, T124N, I182V, V201I, D253E  
10BR_PE100 PE100 None    E11D, V31I, I72V, K111T, S119P, T122I, T125A, I135V, F181L, V201I, T206S, I217V, D286E  
10BR_RJ015 RJ015 None    E11D, S17N, L28I, I84L, L101I, S119T, T124A, K136Q, V165I, V201I, T206S, L234V, D256E, V260L, S283G  
10BR_RJ023 RJ023 None    S17N, I72V, I84L, F100Y, L101I, S119P, T124S, T125A, K136Q, V165I, V201I, A205S, K211R, T218I, D232E, L234V, D256E, S283G E10K, E11N 
10BR_RJ026 RJ026 None    E10D, S17T, I72V, T124A, M154I, D167E, Q177L, L234I, D256E, S283G  
10BR_RJ032 RJ032 None    K34R, L101I, T124A, V201I, T218I  
10BR_RJ041 RJ041 None    R20K, L28I, I72V, L101I, K111R, S119T, I182V, T206S, I208L, K211R, T218S, Y227F, L234I, N254K  
10BR_RJ046 RJ046 None    K14R, V31I, L101I, T124A, K136N, V165I, F181L, G189X, I191IL, G192X, G193X, V201I, N222T, L234V, D256E, D270N, S283G R187RIM, K188KILQ, G190GCW, Y194YF, S195SR, R224Q 
10BR_RJ050 RJ050 None    R20K, M50I, T124G, T125A, V126L, T206S, Y227F, D253Y, A265V  
10BR_RJ051 RJ051 None    K34R, L101I, T124A, V201I, T206S, I208L, K215N, F223L, D256E  
10BR_RJ053 RJ053 None    G4E, E11D, S17N, A21S, V32I, D55N, Y99F, L101I, K111R, T125V, I135V, V165I, V201I, A205S, K211R, L234V, D256E, S283G  
10BR_RJ054 RJ054 None    I72V, Y99F, L101I, G106A, T124A, G193D, V201I, T206S, I208L, T218I, D256E, R269K, D279G  
10BR_SP003 SP003 None   V151I D6S, K7E, S17N, V31I, V32I, I72V, F100Y, L101I, S119T, T125A, V201I, T206S, K219Q  
10BR_SP009 SP009 None  G140S V151I, G163R G4E, E11D, W19*, V31I, V37I, I84L, L101I, W131*, W132*, G134K, I141T, R166K, G193R, I200IL, V201I, N222NK, D232E, L234V, V259I, R269RK, V281M D25N, G47K, G52R, G59R, G70K, G82R, G94R, G106R, G149R, G192R, G197GE, R224RQ, R228RK, W235W*, G272GR 
10BR_SP011 SP011 None   G163R S17G, V31I, L45Q, I72V, L74I, A91E, L101I, K111R, T112V, S119K, T124A, T125A, G134N, I135V, K136N, D167E, G193R, L234I, R269K, S283G G47R, G59R, G149R, R224Q, G272R 
10BR_SP014 SP014 None    E11D, S17T, T122I, T124N, K211Q, S230N, L234I, A265V  
10BR_SP017 SP017 None    S17N, A21S, A23V, L28I, S119P, T122I, T125A, V126M, K215S, S283G, D286N  
10BR_SP021 SP021 None    D6T, K7E, E10D, A49P, I72V, A91S, I113V, T124N, V201I, T218S, I220L, Y227F, D256E  
10BR_SP038 SP038 None    D6E, E11D, S17T, V31I, V37I, M50T, I72V, S119P, T122V, T124A, T125A, I135V, T218I, L234I  
10BR_SP042 SP042 None    K14R, R20K, L101I, K111T, S119P, T125V, I135V, T206S, I220L, S230N, D256E  
10BR_SP043 SP043 None    E10D, R20K, V31I, M50I, G106A, T112A, T125A, K156N, S195C, V201I  
10BR_SP045 SP045 None   V151I K7R, R20K, I72V, V201I, K211R, S283G  
10BR_SP046 SP046 None    S17N, R20K, I72V, L101I, K111R, T112I, T124N, K136Q, G163S, V201I, T218I, L234I, D256E, V281M  
10BR_SP048 SP048 None    S17N, L45Q, S57N, I72V, I84L, S119T, T124A, K136Q, V201I, A205S, K211R, T218I, L234V, N254Q, S255G, D256E, I257L, S283G  
10BR_SP049 SP049 None    E11D, S17N, A21S, I72V, I84M, G106A, T112M, S119P, T124S, M154L, V201I, I203M, T206S, D256E  
10BR_SP050 SP050 None    I72V, I113V, T124Q, T125M, F181L, T206S, D279G, S283G, R284G  
10BR_SP055 SP055 None    S17N, S24D, L28I, S39C, I113V, T122I, T124A, T125A, V201VI  
10BR_SP057 SP057 None   V151I K14R, V31I, E96D, L101I, K136N, S153A, V201I, I208L, L234I, D256E, S283G P233H