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References

Author Neogi (2016)
Title Mutational Heterogeneity in p6 Gag Late Assembly (L) Domains in HIV-1 Subtype C Viruses from South Africa.
Citation ARHR
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 388
NumPts 384
Subtype C, D

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 388 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
107 13.ZA.EC668 None    T12S, I15V, L19I, E35D, M36I, R41K, H69K, L89M, I93L  
1085 13.ZA.EC866 None    L10I, I15V, M36I, N37A, R41K, L63S, H69K, L89M, I93L  
133 13.ZA.EC681 LPV    L10V, K14R, I15V, M36I, N37T, R41K, H69K, L89M, I93L  
135 13.ZA.NL084 LPV    I15V, L19T, M36I, R41K, Q61E, H69K, L89M, I93L  
139 13.ZA.EC530 None    T12S, I15V, L19T, K20R, M36I, R41K, R57K, L63D, H69K, I93L  
1568 13.ZA.GT2851 None    T12S, I15V, L19V, E35D, M36I, R41K, K45KR, L63P, H69K, I72V, V82I, L89M, I93L  
1572 13.ZA.GT3024 LPV    T12S, L19I, M36I, N37S, R41K, L63T, H69K, T74S, L89M, I93L  
1667 13.ZA.GT2855 None    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
1710 13.ZA.GT3147 None    T12S, L19I, M36MI, R41K, D60E, Q61E, L63P, C67S, H69K, I72V, L89M, I93L  
173 13.ZA.EC550 None    I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93L  
176 13.ZA.FS027 None    T12S, I15V, L19I, R41K, K43R, D60E, L63P, H69K, V77I, I93L  
178 13.ZA.NL088 LPV    T12S, I15V, L19I, M36I, N37S, L63LI, I64V, H69K, I93L  
1868 13.ZA.GT3205 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, H69K, T74S, L89M, I93L  
1964 13.ZA.GT2883 None    T12S, I15V, L19I, K20R, M36I, N37D, R41K, D60E, Q61E, C67H, H69K, L89M, I93L  
198 13.ZA.EC609 None    T12S, I15V, L19I, N37S, R41K, Q61E, L63P, H69Q, V77I, I93L  
199 13.ZA.EC680 None    T12P, I15V, L19I, M36I, R41K, D60E, Q61E, H69Q, L89M, I93L  
200 13.ZA.NL096 LPV  M46I  I15V, M36L, R41K, D60E, Q61E, I62V, L63P, H69K, L89M, I93L  
2002 13.ZA.GT2688 None    T12S, I15V, L19I, M36I, R41K, D60E, L63P, H69K, I93L  
2065 13.ZA.GT2716 LPV    T12S, I15V, L19I, M36I, R41K, Q61E, H69K, I93L  
2068 13.ZA.GT3176 None    T12S, I13V, I15V, L19I, M36I, R41K, Q61E, L63T, I64M, E65D, H69K, L89M, I93L  
22 13.ZA.EC776 None    T12S, I15V, G16E, L19I, E35D, M36I, R41K, L63V, H69K, I72V, T74S, L89M, I93L  
222 13.ZA.EC586 None    M36I, N37D, R41K, D60E, L63P, H69K, I93L  
2231 13.ZA.GT2958 None    I15V, L19V, M36I, R41K, L63A, H69K, I93L  
2302 13.ZA.GT2943 None    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
2322 13.ZA.GT2664 None    T12S, I15V, L19I, E35D, M36I, R41K, D60E, Q61E, L63P, H69K, I93L  
2385 13.ZA.GT2780 None    T12S, I15V, L19I, M36I, R41K, K43R, L63P, H69K, I93L  
2389 13.ZA.GT2771 None    I15V, L19I, E35D, M36I, R41K, H69K, T74S, L89M, I93L  
2404 13.ZA.GT3037 None    T12S, I15V, L19V, M36I, R41K, L63P, H69K, L89M, I93L  
2483 13.ZA.GT2721 None    T12S, I15V, L19I, M36I, R41K, L63T, H69K, I93L  
2515 13.ZA.GT3116 LPV    T12S, I15V, L19I, N37S, R41K, H69K, V77I, L89M, I93L  
2742 13.ZA.GT2680 None    L19T, K20R, M36I, N37D, R41K, H69K, L89M, I93L  
32 13.ZA.EC512 None    T12S, L19I, K20R, M36I, R41K, L63A, H69K, L89M, I93L  
3353 13.ZA.GT3029 None    L19T, M36I, R41K, I62V, L63S, H69K, A71T, I93L  
3375 13.ZA.GT3126 None    T12S, K14R, I15V, Q18E, L19IT, K20R, M36I, R41K, L63V, H69K, V77I, L89M, I93L  
3443 13.ZA.GT2931 None    T12S, I15V, L19I, M36I, R41K, H69K, I93L  
3794 13.ZA.GT2869 None    I15V, L19I, E35D, M36I, R41K, H69K, T74S, L89M, I93L  
3804 13.ZA.GT2770 LPV    T12S, I15V, G17D, L19IT, E35D, M36I, R41K, K45KR, D60E, L63P, H69K, I72V, V82I, I93L  
4087 13.ZA.GT2671 None    I15V, L19V, M36I, R41K, D60E, H69K, L89M, I93L  
4120 13.ZA.GT3007 None    I15V, M36I, R41K, L63V, H69K, I72M, T74S, L89M, I93L  
4177 13.ZA.GT2698 None    T12S, I13V, I15V, L19I, K20R, M36L, N37AGST, L63P, C67F, H69K, V77I, L89M, I93L  
4185 13.ZA.GT3170 None    K14R, I15V, L19V, E35D, M36I, R41K, L63T, I64V, H69K  
4190 13.ZA.GT3123 LPV    I15V, L19I, M36I, N37T, R41K, L63T, H69K, V82I, L89M, I93L  
4195 13.ZA.GT3117 None    T12S, I15V, L19I, E35D, M36I, R41K, Q61E, H69K, L89M, I93L  
4197 13.ZA.GT2612 None    T12S, I15V, L19I, M36I, L63T, H69K, T74S, V82I, L89M, I93L  
4204 13.ZA.GT2668 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63T, H69K, I93L  
4207 13.ZA.GT2702 None    T12S, L19T, K20R, M36I, R41K, L63V, H69K, L89M, I93L  
4209 13.ZA.GT2723 None    L19I, E35D, M36I, R41K, Q61E, L63P, H69K, T74S, L89M, I93L  
4213 13.ZA.GT2750 None    T12S, I15V, L19V, M36I, R41K, L63Q, H69K, I93L  
4214 13.ZA.GT2724 None    T12S, I15V, L19V, M36I, R41K, L63H, H69K, L89M, I93L  
4253 13.ZA.GT2916 None    I15V, G16E, L19I, E35ED, M36L, N37S, R41K, L63T, H69K, I93L  
4270 13.ZA.GT3140 None    T12S, I15V, L19I, M36I, R41K, L63A, H69K, L89M, I93L  
4431 13.ZA.EC763 None    T12S, I13V, I15V, L19I, R41K, L63P, H69K, T74S, V77I, L89M, I93L  
46 13.ZA.EC705 None    T12S, L19I, N37S, R41K, L63P, H69K, L89M, I93L  
500 13.ZA.EC826 None    T12S, I15V, G16A, L19V, M36I, N37S, R41K, H69K, L89I, I93L  
505 13.ZA.EC524 None    I15V, L19T, M36I, R41K, L63S, H69K, L89M, I93L  
517 13.ZA.EC885 None    T12S, I15V, L19I, E35D, M36I, R41K, L63V, H69K, T74S, L89M, I93L  
5484 13.ZA.EC492 None    T12S, L19I, E35D, M36I, R41K, L63P, H69K, T74S, V77I, L89M, I93L  
5489 13.ZA.EC500 None    L19T, K20R, M36I, H69K, L89I, I93L  
5490 13.ZA.EC504 None    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
5498 13.ZA.EC525 None    L10I, T12S, I13IV, G16E, L19IT, K20M, M36L, N37A, D60E, L63T, H69K, L89M, I93L  
5500 13.ZA.EC534 None    I15V, L19V, E35D, M36I, R41K, Q61E, L63P, H69K, T74S, L89M, I93L  
5511 13.ZA.EC560 None    K14R, I15V, L19M, K20R, E35D, M36I, N37D, R41K, H69K, L89M, I93L  
5512 13.ZA.EC561 None    T12S, I15V, L19I, E35D, M36I, R41K, K45R, D60E, L63P, H69K, L89M, I93L  
5525 13.ZA.EC591 None    I15V, M36I, R41K, Q61E, H69K, T74S, L89M, I93L  
5533 13.ZA.EC610 None    T12S, I15V, L19I, M36I, R41K, I64IV, H69K, I93L  
5539 13.ZA.FS011 None    T12TS, K14KR, I15V, L19V, K20R, E35D, M36I, R41K, H69K, T74S, L89M, I93L  
5547 13.ZA.EC637 None    T12S, I15V, L19I, E35D, M36I, N37E, R41K, R57K, D60E, L63P, H69K, I93L  
5556 13.ZA.EC657 LPV    T12S, I15IV, L19I, R41RK, L63P, H69KQ, T74TS, V77I, L89M, I93L  
5565 13.ZA.EC692 None    I15V, L19I, E35D, N37E, L63P, H69K, T74S, V77I, L89M, I93L  
5577 13.ZA.EC737 None    T12S, I15V, L19I, M36IL, N37A, R41K, D60E, Q61E, L63P, H69K, L89M, I93L  
5581 13.ZA.EC755 LPV  M46I, I54V, L76V, V82A L10F, K43T I15V, L19I, M36MI, I62V, L63P, H69K, A71V, L89M, I93L  
5595 13.ZA.EC781 None    T12S, I15V, G16A, L19I, M36I, R41K, D60E, H69K, L89M, I93L, L97I  
5598 13.ZA.EC798 None    I15V, L19T, E35D, M36I, N37E, R41K, R57K, D60E, Q61E, L63P, H69K, L89M  
5608 13.ZA.EC817 LPV    T12S, I15V, L19IT, K20R, E35D, M36I, N37D, R41K, H69K, T74TS, L89M, I93L  
566 13.ZA.EC537 None    T12S, I15V, L19T, K20R, M36I, R41K, I62V, L63Q, H69K, I93L  
590 13.ZA.EC734 None  V82A  T12S, I15V, L19T, K20R, M36I, R41K, I62V, L63LP, I64L, H69K, L89M, I93L  
60 13.ZA.EC863 None    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
686 13.ZA.EC624 None    T12S, I15V, L19I, M36L, R41K, L63P, H69K, I93L  
696 13.ZA.EC518 None    K14N, G16A, L19T, M36I, R41K, D60E, Q61E, H69K, L89M, I93L  
704 13.ZA.EC648 None    T12S, I15V, L19I, L63P, H69K, V77I, L89M, I93L  
7112 13.ZA.EC515 LPV  V32VI, M46MI, I47A L10F L19T, N37NS, R41K, H69K, A71AV, V77I, L89M, I93L  
7114 13.ZA.EC517 LPV  M46I, I50IV, I54V, V82A L10F, L23LI, L24LI, L33F T12S, L19I, N37S, R41K, L63P, H69K, A71V, I93L  
7120 13.ZA.EC551 None    T12S, I15V, Q18L, L19V, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L  
7124 13.ZA.EC574 None    T12S, I15V, G16E, L19I, E35D, M36I, P39T, R41K, K45KR, D60E, L63T, H69K, L89M, I93L  
7126 13.ZA.EC575 None    T12S, I15V, L19I, N37S, R41K, H69K, T74S, V77I, L89M, I93L  
7133 13.ZA.EC597 None    T12S, I13V, I15V, G16E, L19I, M36I, R41K, D60E, H69K, L89M, I93L  
7137 13.ZA.EC676 None    T12S, I15V, L19I, N37S, R41K, L63HP, H69K, I72IV, V77I, L89M, I93L  
7138 13.ZA.EC677 None    I13V, K20R, M36I, R41K, L63P, H69K, I93L  
7139 13.ZA.EC695 None    T12S, I15V, L19I, K20R, E35D, M36I, N37ND, R41K, R57K, L63V, H69K, T74S, L89M, I93L  
7142 13.ZA.EC721 None    T12S, I15V, L19I, M36MI, N37K, R41N, L63S, H69K, L89M, I93L  
7147 13.ZA.EC760 None    T12A, I15V, L19T, M36I, R41K, Q61QE, L63P, H69K, V75I, L89M, I93L  
7154 13.ZA.WC355 LPV    T12Q, I15V, L19I, M36I, R41K, Q61N, L63H, H69K, K70Q, I72M, I93L  
7155 13.ZA.EC848 None    I15V, L19I, N37S, R41K, L63T, H69K, V77I, L89M, I93L  
7160 13.ZA.EC878 None    T12S, I15V, G16E, L19I, E35D, M36I, R41K, D60E, Q61N, H69K, L89M, I93L  
734 13.ZA.WC296 LPV    T12S, L19IV, E35D, M36I, R41K, L63AGST, H69K, T74S, L89M, I93L  
778 13.ZA.WC375 LPV    T12S, I15V, L19I, M36I, R41K, L63P, H69K, I93L  
795 13.ZA.WC292 LPV    T12S, K14R, I15V, L19I, K20R, E35D, N37A, R41K, L63A, H69K, V77I, V82I, L89M, I93L  
853 13.ZA.WC317 LPV    T12S, I15V, L19IT, M36I, R41K, L63P, H69K, L89M, I93L  
914 13.ZA.WC348 LPV    T12S, I15V, L19I, K20R, E35D, M36I, R41K, H69K, L89M, I93L L23LF 
945 13.ZA.WC302 LPV    I15V, G16E, L19I, K20R, M36L, R41K, H69K, V77I, L89M, I93L