Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Wilkinson (2015)
Title Sequencing and phylogenetic analysis of near full-length HIV-1 subtypes A, B, G and unique recombinant AC and AD viral strains identified in South Africa.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 7
NumPts 7
Subtype B, A, D, C, G


Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
TV016 TV016 RTI RTI   R83K, Q207K, R211K, V245Q, A272P, K277R, I329L, G333E, R356K, A360T, K390R, K395R, E399D, L452S, D460N, T497Q  
TV047 TV047 None None   K102Q, I159V, K173Q, Q207E, R211K, A272P, P294Q, I326V, P345Q, F346Y, R356K, K390R, T397TA, A400T, E404D, T470N, A554S  
TV096 TV096 None None   E6EK, V35T, K122E, D123N, I135IT, K173S, I202V, Q207N, R211S, F214L, V245Q, E248D, K275Q, K281R, T286A, E291D, V292I, I293V, P294T, E297K, E312D, I326V, G335D, R356K, M357K, G359S, A371V, I375V, A376V, A400T, E432D, V435L, E449N, R461K, D471E, Q480H, H483Y, L491P, K512R, S515A, L517I, S519N, Q524K, K527E, A534S, A554S  
TV101 TV101 None None  E138K V35T, V60I, K102Q, I135T, K166KR, K173L, Q174K, D177E, V179I, T200A, Q207A, R211S, V245M, D250E, A272P, K277R, L282C, L283I, I293V, G335D, E344ED, P345Q, F346H, R356K, A360T, T377Q, S379C, K390R, A400T, T403A, V435I, V467I, L469I, K476Q, H483N, L491S, I495V, S519N, Q524K, K527G, E529D, A534S, V548VI, A554S  
TV1057 TV1057 RTI RTI   R83K, D177E, Q207E, A272P, I326V, I329L, R356K, M357L, A360I, R461K, L503I  
TV218 TV218 None None   V35T, E36A, T39E, S48T, V60I, S68G, K122E, D123DG, K173A, Q174K, D177E, T200A, I202IV, Q207G, R211K, F214L, V245Q, A272P, K277T, E291D, V292I, I293V, S322A, I329L, Q334N, G335D, R356K, M357R, G359T, K366R, A376S, T377L, K390R, T397A, A400V, E404D, V435A, L452M, K454R, V466I, S468T, T470N, D471E, H483Q, L491P, V493A, S519N, K530R, A534S, A554K  
TV546 TV546 None None   V35T, V60I, K173T, Q174K, D177E, I178M, G196E, T200A, Q207G, R211K, V245Q, E248D, D250E, S251I, A272P, K281R, E291D, V292I, I293V, E297A, D324E, I329V, Q334L, G335E, F346Y, R356K, M357K, R358G, G359S, A371V, T377V, T386I, Q394R, A400V, E413D, Q428R, K431T, V435P, F440Y, R463K, V466I, S468T, D471E, H483Q, L491S, Q509I, K512R, S519N, K527N, A534S, A554N