Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Wilkinson (2015)
Title Sequencing and phylogenetic analysis of near full-length HIV-1 subtypes A, B, G and unique recombinant AC and AD viral strains identified in South Africa.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 7
NumPts 7
Subtype B, A, C, G

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
TV016 TV016 None  R263K E138G E11D, D25E, V31I, I72V, T112I, S119P, T125V, G193E, Q209P, N222H, R228G, V281L, S283I, R284K, D288G T124P, Q137P, S230P, E246A, G247R, D253N, G272A, G277S 
TV047 TV047 None    I72IV, S119P, V165VI, G193E, V201I, D279G  
TV096 TV096 None    K7R, E11D, K14R, A21T, M50I, L74I, I84M, G106A, T112V, T124A, T125A, G134DN, K136Q, D167E, V201I, L234I, K240R, D256E, S283G  
TV101 TV101 None    E11D, K14R, A21T, V31I, I72V, L101I, T112V, I113V, T125A, G134N, I135V, K136Q, V201I, Q216H, T218S, L234I, N254NS, D256E, S283G  
TV1057 TV1057 None    R20K, V31I, S39C, I72V, A91S, L101I, G193E, D207N, K211N, S230N, N254K S119~, N120H 
TV218 TV218 None    E11D, K14R, D25E, V31I, M50I, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, R269K, D278A, S283G  
TV546 TV546 None    K14R, V31I, L74I, T112V, T124Q, T125A, G134S, K136T, V201I, L234I, S255N, D256E, I267V, I268L, S283G