<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Delgado (2015)
Title Phylogeny and phylogeography of a recent HIV-1 subtype F outbreak among men who have sex with men in Spain deriving from a cluster with a wide geographic circulation in western Europe.
Citation PLoS ONE
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 61
NumPts 61
Subtype F

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
P2563 P2563 None None   V35I, E40D, K49R, V106I, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, K275R, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
P2944 P2944 None None   V35I, E40D, K49R, K103KR, V106I, D123E, I135L, T165I, E169D, K173A, Q174K, D177G, I178L, T200A, Q207N, R211K, V245Q, E248D  
VA0043 VA0043 None None   V35I, E40D, K49R, V106I, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P  
VA0047 VA0047 None None   V35I, E40D, K49R, D123E, I135L, S162C, E169D, K173I, Q174K, D177E, I178L, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
VA0053 VA0053 None None   K32KR, V35I, E40D, K49R, D123E, I135L, S162C, S163ST, E169D, K173A, Q174K, D177G, I178L, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, E297A, P321Q, D324E, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V467I, S468P, D471E, T477A, Q480H, H483Q, L484I, S489A, L491S, S519N, A534S, A554N, V559I  
X2871 X2871 None None   V35I, E40D, K49R, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, V276I, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554R, V559I  
X2873 X2873 None None   V35I, E40D, K49R, R83K, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X2898 X2898 None None   V35I, E40D, K49R, K104R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, Q464E, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X2902 X2902 None None   V35I, E40D, K49R, K101KQ, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A  
X2922 X2922 None None   V35I, E40D, K49R, V106VI, D123E, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207N, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3016 X3016 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K388N, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3069 X3069 None None   V35I, E40D, K49R, V106I, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452R, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3070 X3070 None None   V35I, E40D, K49R, V106I, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177G, I178V, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3079 X3079 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3085 X3085 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297T, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, S468F, T470I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3097 X3097 None None   V35T, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173V, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297T, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3124 X3124 None None   V35IT, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D  
X3125 X3125 None None   E40D, K49R, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, D250E, A272P, T286A, E291D, V292I, I293V, P294T, E297T, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3180 X3180 None None   V35I, E40D, K49R, V106VI, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A  
X3230 X3230 None None   V35I, E40D, K49R, K101Q, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207DHN, R211K, V245Q, E248D, A272P, V276VI, T286A, E291D, V292VI, I293V, P294T, E297AT, I329V, Y339F, F346C, R356K, G359S  
X3242 X3242 None None   V35I, E40D, K49R, K104R, V106I, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207N, R211K, V245Q, E248D  
X3245 X3245 None None   V35T, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173V, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V  
X3247 X3247 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3252 X3252 None None   V35I, E40D, K49R, D123E, I135L, E169D, K173A, Q174KR, D177EG, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A  
X3254 X3254 None None   K20KR, V35IT, E40D, K49R, V106I, K122KE, D123E, I135L, S162C, E169D, K173A, Q174K, D177EG, I178L, T200A, E203Q, Q207D, R211K, V245Q, E248D, A272P, R284RK, T286A, E291D, V292I, I293V, P294T, E297A  
X3307 X3307 None None   V35T, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173V, Q174K, D177G, I178L, T200A, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, I293V, P294T, E297T  
X3308 X3308 None None   V35I, E40D, K49KR, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297V, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, R448K, L452K, V466A, V467I, S468P, D471E, T477A, Q480H, H483Q, L484I, L491S, E492K, S519N, A534S, A554S, V559I  
X3349 X3349 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L  
X3361 X3361 None None   E40D, K49R, V106VI, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207DN, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, A534S, A554S, V559I  
X3364 X3364 None None   E40D, K49R, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S, T377L, T386I, K390R, Q394L, E399D, A400T, K431T, V435A, A446S, L452K, V466A, V467I, S468F, D471E, T477A, Q480H, H483Q, L484I, L491S, S519N, E529D, A534S, A554S, V559I  
X3366 X3366 None None   V35I, E40D, K49R, V106I, D123DE, I135L, I142IT, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207N, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, Y339F, R356K, G359S  
X3369 X3369 None None   E40D, K49R, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3394 X3394 None None   V35I, E40ED, K49R, V106I, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177EG, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3458 X3458 None None   V35VI, E40D, K49R, V106VI, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207DN, R211K, V245Q, E248D, D250E, A272P, T286A, E291D, V292I, I293V, P294T, E297T, I329V, Y339F, R356K, G359S  
X3498 X3498 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177EG, I178L, T200A, Q207D, R211K, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, P294T, E297V, I329V  
X3503 X3503 None None   V35T, E40D, K49R, V106I, K122R, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200V, E203Q, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329L, Y339F, R356K, G359S  
X3506 X3506 None None   V35I, E40D, K49R, K104R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207N, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, Y339F, R356K, G359S  
X3520 X3520 None None   V35T, E40D, K49R, K104KR, V106I, D123E, I135L, S162C, E169D, K173V, Q174K, D177G, I178L, T200A, Q207E, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, I293V, P294T, E297T, I329V, Y339F, R356K, G359S, T377L  
X3522 X3522 None None   V35IT, E40D, K49R, K104KR, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177EG, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, A288T, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3530 X3530 None None   V35T, T39A, K49R, V106I, D123E, I135L, S162C, E169D, K173V, Q174K, D177EG, I178L, T200A, Q207N, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, I293V, P294T, E297T, I329V, Y339F, R356K, G359S  
X3537 X3537 None None  A98G V35T, E40D, K49R, D123E, I135L, S162C, E169D, K173A, Q174K, D177E, I178V, Q207K, L210LM, R211A, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, K331E Q330T 
X3538 X3538 None None   V35T, E40D, K49R, K102KR, V106I, D123E, I135L, S162C, T165I, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Q334QKR, Y339F, R356K, G359S  
X3542 X3542 None None   V35I, E40D, K49R, V106I, D123E, I135IL, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207D, R211K, P243PL, I244IV, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, P313PT, V317VA, I329V, Y339F, R356K, G359S  
X3543 X3543 None None   V35VI, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177EG, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3547 X3547 None None   V35I, E40D, K49R, V106VI, D123E, I135L, A158AS, S162C, T165TI, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297V, I329V, Y339F, R356K, G359S  
X3551 X3551 None None   V35I, E40D, K49R, S105A, V106I, D123E, I135L, A158AS, S162C, T165TI, E169D, K173A, Q174K, D177EG, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3554 X3554 None None   V35I, K49R, V106I, D123E, I135L, A158T, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3555 X3555 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, T165I, E169D, K173A, Q174K, D177E, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297AV, I329V, Y339F, R356K, G359S L193LS 
X3558 X3558 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292VI, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3561 X3561 None None   E40D, V106I, D123E, I135L, S162Y, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, K275R, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3566 X3566 None None   E40D, K49R, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207DE, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3567 X3567 None None   K11KR, V35I, E40D, K49KR, V106I, D123E, I135L, S162C, E169N, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, A288T, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3568 X3568 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207N, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3598 X3598 None None   V35VIM, E40D, K49R, T69TA, D123E, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, K277KR, T286A, E291D, V292I, I293V, P294T, E297A, K311R, I329V, Y339F, R356K, G359S  
X3602 X3602 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, E297V, I329V, Y339F, R356K, G359S  
X3623 X3623 None None   V35T, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173I, Q174K, D177G, I178L, T200A, Q207K, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, I293V, P294T, E297T, I329V, Y339F, R356K, G359S  
X3671 X3671 None None   V35T, K49R, V106I, D123E, I135L, S162C, E169D, K173V, Q174K, D177G, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, E297T, I329V, Y339F, R356K, G359S  
X3689 X3689 None None   V35I, E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297V, I329V  
X3724 X3724 None None   E40D, K49R, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177E, I178L, T200A, Q207D, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, E297A, I329V, Y339F, R356K, G359S  
X3744 X3744 None None   V35I, E40D, K49R, S68SG, V106I, D123E, I135L, S162C, E169D, K173A, Q174K, D177G, I178L, T200A, Q207E, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, E297A, I329V, Y339F, R356K, G359S  
X3793 X3793 None None   E40D, K49R, A98AS, K101KR, V106VI, D123E, S162C, E169D, K173A, Q174K, D177E, I178L, T200TA, Q207D, R211K, V245Q, E248D, D250E, A272P, T286A, E291D, V292I, I293V, P294T, E297T, V317VA, I329V, Y339YF, R356K