Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Hora (2015)
Title Genetic characterization of a panel of diverse HIV-1 isolates at seven international sites.
Citation PLoS ONE
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 166
NumPts 166
Subtype B, C, A, D, CRF01_AE, CRF02_AG, G, F, CRF47_BF, CRF04_cpx, CRF63_02A1, CRF09_cpx

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 166 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
DE00109CN003 DE00109CN003 None    K14R, A21T, L45V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
DE00109CN004 DE00109CN004 None    K14R, A21T, L45V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
DE00109CN005 DE00109CN005 None    K14R, A21T, V31I, V32I, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
DE00109CN008 DE00109CN008 None    K14R, A21T, V31I, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, I220L, L234I, S283G E152EK 
DE00110CN007 DE00110CN007 None    A21T, A23V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
DE00110TH001 DE00110TH001 None    K14R, A21T, V31I, S39N, I72V, V88I, T112V, T125A, V126M, G134N, I135V, K136R, D167E, K173R, V201I, I203M, L234I, S283D A133V 
DE00111CN003 DE00111CN003 None    K14R, I72V, T112V, T124A, T125A, G134N, I135V, K136R, G193E, V201I, L234I, S283G, D288N  
DE00111JP003 DE00111JP003 None    E11D, K14R, A21T, V31I, S39Q, E96D, L101I, T112V, T124A, T125A, G134N, I135V, K136Q, M154I, V165I, D167E, V201I, L234I, S283G E35K, E85K 
DE00206AO001 DE00206AO001 None    S17N, A23T, V31I, L63I, L74I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, D278N, S283G  
DE00208CM001 DE00208CM001 None    E11D, K14R, S24N, L63I, L74I, E96D, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, T206S, T218I, L234I, S283G, R284G, D288N  
DE00210CM013.2 DE00210CM013.2 None    D3E, V31I, I72V, L74I, Y99F, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, D286N  
DE01405ES002 DE01405ES002 None    K14R, G106A, T112I, T124A, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G, D288E  
DE02210CM003 DE02210CM003 None    E11D, K14R, A21T, A23V, D41N, I72V, L101I, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, T218I, L234I, S283G, R284G, D288N  
DE02210CM005 DE02210CM005 None    D41N, M50I, I72V, L101I, T112V, S119T, T124S, T125A, G134D, K136Q, D167E, V201I, Y227F, L234I, S283G, D286G  
DE02210CM006 DE02210CM006 None    K14R, A21T, V31I, D41N, M50I, I72V, L101I, T112V, S119P, T124A, T125A, G134D, K136Q, D167E, V201I, T206S, T218S, I220L, Y227F, L234I, S283G, D288N  
DE02210CM012 DE02210CM012 None    A21T, D41N, M50I, I72V, L101I, T112V, S119T, T124S, T125A, G134D, K136Q, D167E, V201I, Y227F, L234I, S283G, D286G  
DE04708ES003 DE04708ES003 None    S17N, L28I, L45Q, I72V, M154I, V165I, K188R, I208L, L234V, D256E, S283G  
DEMA07RW002 DEMA07RW002 None   T97A V31I, S39N, I60M, I72V, I84L, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, D167E, H171Y, V201I, Q221H, N222K, L234I, S255N, S283G A38V 
DEMA106ES002 DEMA106ES002 None    E11D, K14R, V31I, I60M, I72V, T112V, I113V, S119P, T124A, T125A, V126F, G134S, I135V, K136Q, D167E, K173R, V201I, L234I, S283G  
DEMA108RU003 DEMA108RU003 None    R20K, V31I, I72V, L74I, T112V, I113V, S119P, T124S, T125A, G134D, K136Q, D167E, V201I, L234I, S255N  
DEMA109UG001 DEMA109UG001 None    K14R, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, F139Y, G193D, V201I, K211R, D232E, S255N, A265V, R269K, D278A, V281M, S283G, D288N  
DEMA111KE002 DEMA111KE002 None    K14R, V31I, S39N, I72V, L101I, K103R, T112V, S119P, T122I, T124A, T125A, G134N, D167E, F181L, V201I, Q216N, S255G, I268L, R269K, D270H, S283G  
DEMA111RW002 DEMA111RW002 None    K14R, V31I, I72V, T112V, I113V, T124A, T125A, G134D, D167E, V201I, L234I, A265V, S283G  
DEMA11KE001 DEMA11KE001 None    K14R, I72V, L101I, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, R269K, S283G  
DEMB03JP004 DEMB03JP004 None    K156N  
DEMB08ES001 DEMB08ES001 None    I72V, S119G, T122I, T124N, A265V  
DEMB08FR002 DEMB08FR002 None    V31I, S57N, V77A, L101I, T124A, V201I, T206S, K215N, N222K  
DEMB08UY001 DEMB08UY001 None    D6E, E10D, S24N, D25E, E35Q, S39N, L45I, I72V, S119P, T125V, K156N, Q216H, T218I, D253H, D256E  
DEMB09CN002 DEMB09CN002 None    S17N, V31I, S39N, L45I, I72V, L101I, K103R, T112K, T124A, K156N, D167E, I220V, S230N, K240R  
DEMB09CN013 DEMB09CN013 None    L28I, E96X, K156N, G189R  
DEMB09ES007 DEMB09ES007 None  R263RK  E10D, M50I, I72V, G106A, T124A, K136R, V165I, V201I, S230N, I268L  
DEMB09FR001 DEMB09FR001 None    E11D, R20K, L28I, V37I, S39Q, I72V, L101I, K111T, I113V, S119T, T124A, G193R, V201I, S230N, S283G  
DEMB09US002 DEMB09US002 None    K7R, S17N, L101I, T124A, T125A, I135V, D167E, G193E, V201I, K219N, I220L, N222K, D256E  
DEMB09US003 DEMB09US003 None    S17N, V31I, M50I, D55N, T122I, T124N, T125A, M154I, K211R, S230N, A265V E152K 
DEMB10ES002 DEMB10ES002 None    K14R, L28I, S39C, I72V, V79A, I113V, S119P, T124N, V201I, V259I, S283G  
DEMB10ES003 DEMB10ES003 None    L2S, E11D, A21T, A91E, L101I, S119R, T122I, T124A, G193E, L234I, V281M, D288G  
DEMB10US007 DEMB10US007 None    E10D, S24N, V31I, A91T, L101I, S119R, T125A, I135V, E157Q, K160E, V201I, K211R, K219N, N222K, D256E  
DEMB11FR001 DEMB11FR001 None   E138D K188R, V201I, A265V  
DEMB11US002 DEMB11US002 None    L101I, K156N, I268L  
DEMB11US011 DEMB11US011 None    E11D, S24N, L45I, V201I, T206S, I208L, M275V  
DEMB11US015 DEMB11US015 None    S17N, L101I, T122I, T124A, K156N, D232E, D253E, D256E  
DEMB12CN006 DEMB12CN006 None    S17N, V32I, L45I, I72V, L101I, K103R, T112K, T124A, K156N, D167E, V201I, I220V, S230N, K240R  
DEMB12CN010 DEMB12CN010 None    K7R, E11D, F26Y, V37I, I72V, L101I, T112A, S119P, T122I, T125A, V126A, I208L, Q252K, R284G  
DEMB12JP001 DEMB12JP001 None    E10D, S39C, L101I, K156N, I203M  
DEMB13ES010 DEMB13ES010 None    D6E, E11D, S17N, S39C, M50I, I72V, L101I, T112I, T124N, T125V, G163E, A175V, K211R, T218S, Y227F, D256E  
DEMBF09ES003 DEMBF09ES003 None    S17N, V31I, I72V, I84L, S119T, T124A, T125A, M154L, V165I, T206S, T218I, L234V, D253E, D256E  
DEMBF09ES006 DEMBF09ES006 None    E11D, S17N, L28I, I84L, L101I, T112I, S119P, T124A, T125A, K136Q, V165I, D167E, V201I, I203M, L234V, D256E, S283G  
DEMBXXDE001 DEMBXXDE001 None    E11D, S17C, L45I, L101I, K160Q  
DEMBXXPL001 DEMBXXPL001 None    E11D, A21T, A23V, D25E, L101I, V201I, I204V, K211R  
DEMC00IN005 DEMC00IN005 None    K42Q, L101I, T112V, T122I, T124A, T125A, K136Q, S153A, V201I, L234I, R269K, D278A, V281M, S283G  
DEMC00IN006 DEMC00IN006 None    V31I, D41N, K42Q, F100Y, L101I, T112V, T124A, F181L, V201I, L234I, D278A, S283G  
DEMC00IN007 DEMC00IN007 None    K14R, V31I, K42Q, L101I, T112V, T124A, T125V, K136Q, V165I, Q177L, V201I, L234I, S255R, R269K, D278A, S283G, R284G  
DEMC00IN008 DEMC00IN008 None    V31I, K42Q, I84L, F100Y, L101I, G106A, T112A, T124A, T125A, K136Q, V165I, I203M, T218I, L234I, S255N, R269K, D278A, S283G  
DEMC00IN010 DEMC00IN010 None    V31I, K42Q, L101I, T112V, T124A, T125A, K136Q, I203M, T218I, L234I, R269K, D278A, S283G  
DEMC07BR003 DEMC07BR003 None    E11D, S24N, D25E, V31I, M50T, L101I, S119P, T122I, T124N, K136Q, K215N, T218I, L234I, I251L, A265V, R269K, D278A  
DEMC07MW001 DEMC07MW001 None    K14R, D25E, V31I, I72V, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, K219N, L234I, A265V, D278A, S283G  
DEMC08MW002 DEMC08MW002 None    V31I, M50I, I72V, F100Y, L101I, G106A, T112M, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, D278A, S283G  
DEMC08MW004 DEMC08MW004 None    S17N, V31I, M50I, F100Y, L101I, T112I, T124N, T125A, K136Q, K156R, D167E, V201I, T206S, T218I, L234I, A265V, R269K, S283G, R284G, D286N, D288N  
DEMC08NG001 DEMC08NG001 None    E11D, S17T, D25E, V31I, V37I, S39N, M50L, K71R, I72V, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, V165I, V201I, T218I, L234I, A265AT, D278A, S283G  
DEMC08ZA011 DEMC08ZA011 None    D6E, S17N, D25E, P30S, M50I, I60V, I84M, F100Y, L101I, T112V, T124A, T125A, K188R, V201I, T206S, T218I, I220V, L234I, A265V, D278V, S283G  
DEMC09MW006 DEMC09MW006 None    S17N, A21S, D25E, V31I, M50I, I72V, F100Y, L101I, T112I, S119P, T124A, T125A, K136Q, I141V, V201I, D207N, K211T, T218L, K219Q, L234I, N254K, S255G, R269K, D278A, S283G  
DEMC09MW008 DEMC09MW008 None    S17N, V31I, M50I, I72V, I84M, E96D, L101I, T112V, T124A, K136Q, V201I, L234I, D278A, S283G, R284G  
DEMC09ZA008 DEMC09ZA008 None    D25E, V31I, M50I, I72V, F100Y, L101I, K111R, T112V, T124A, T125A, K136Q, K188R, V201I, L234I, A265V, I268L, D278A, S283G  
DEMC09ZA009 DEMC09ZA009 None    K14R, V31I, L45I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
DEMC09ZM004 DEMC09ZM004 None    K14R, S24N, D25E, M50V, I72V, L74I, F100Y, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, T218I, L234I, D278A, S283G  
DEMC11ZM003 DEMC11ZM003 None    K14R, S24N, D25E, M50I, I72V, I84M, P90S, F100Y, L101I, T112I, T124A, T125A, K136Q, V165I, V201I, T218I, L234I, V260I, D278A, S283G  
DEMC11ZM005 DEMC11ZM005 None    E11D, D25E, V31I, L101I, T112V, V126A, K136T, V201I, T218I, L234I, A265V, D278A, R284G  
DEMC11ZM006 DEMC11ZM006 None    K14R, S17N, D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D256E, D278A, S283G  
DEMC11ZM008 DEMC11ZM008 None    S17N, D25E, V31I, L74I, T93S, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
DEMC12ZA087 DEMC12ZA087 None    D25E, V31I, L45Q, L101I, T112V, T124N, K136Q, V165I, V201I, K215N, L234I, D270H, D278A, S283D  
DEMC99IN001 DEMC99IN001 None    K42Q, L101I, T112V, T124A, T125A, K136Q, T218I, L234I, R269K, D278A, S283G  
DEMC99IN002 DEMC99IN002 None    E11D, V32I, D41N, K42Q, I84M, L101I, T112V, T124A, T125A, G134N, K136Q, V201I, T218I, L234I, R269K, D278A, S283G D3N 
DEMC99IN003 DEMC99IN003 None  E138K  V31I, V32I, I84M, L101I, T112V, T125A, K136Q, I162V, D167E, V201I, I203M, K215N, L234I, D278A, S283G  
DEMD07UG002 DEMD07UG002 None    S17N, M50L, I72V, T112V, I113V, T124G, T125A, K188R, V201I, T218I, L234V, A265V  
DEMD11KE003 DEMD11KE003 None    S17N, I72V, T112V, I113V, T124A, H171Q, V201I, L234I, A265V  
DEMD11UG003 DEMD11UG003 None    S17N, V31I, M50L, I72V, L101I, T112V, I113V, T122I, T124A, T125A, D167E, V201I, L234I, A265V  
DEMF110ES001 DEMF110ES001 None    E11D, S17N, I72V, L101I, S119P, T122I, T124A, T125A, I135V, K136Q, V165I, V201I, T218I, Q221K, L234V, D256E, S283G  
DEMF210CM001 DEMF210CM001 None    M50I, L101I, T125V, I135V, K136N, Y194C, V201I, T206S, I208L, E212A, T218S, N222K, Y227F, L234I, S255N, D256E, K273KQ, S283G  
DEMF210CM007 DEMF210CM007 None    Y15F, S17N, H51Q, T112I, T124A, T125A, K136Q, V201I, T206S, L234I, S255N, D256E, D286A  
DEMG09ES002 DEMG09ES002 None    K14R, S17N, L101I, T112I, T124A, G134N, K136T, G163M, K173R, V201I, T206S, I208L, L234I, S255N, D256E, S283G  
DEMG09KE001 DEMG09KE001 None   L74M, T97A K14R, V31I, I72V, L101I, T112V, T122I, T124A, T125A, G134N, K136T, K173R, I200M, V201I, T206S, L234I, S255N, S283G  
DEMG10CM008 DEMG10CM008 None   T97A K14R, S17N, S24N, V31I, M50I, K71Q, L101I, T112V, S119R, T124N, T125A, G134N, K136T, D167E, V201I, T206S, L234I, S255N, D256E, S283G  
DEURF06CM001 DEURF06CM001 None    V31I, S39N, L74I, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K, D278N, S283G  
DEURF07UG006 DEURF07UG006 None    S17N, S39C, M50L, L101I, T112V, T124N, K173R, V201I, T218S, Y227F, L234I, D256E, S283G  
DEURF09KE002 DEURF09KE002 None    K14R, M50I, I72V, T112V, I113V, T124A, T125A, K136Q, V201I, S283G  
DEURF09KE004 DEURF09KE004 None    S17N, M50L, I72V, L101I, T112I, I113V, T122I, T124A, T125A, V201I, I208M, S283G  
DEURF09UG002 DEURF09UG002 None   T97A S17N, K34R, M50L, I72V, I84M, T112V, I113V, T124A, T125A, V201I, S283G  
DEURF09UG004 DEURF09UG004 None   T97A S17N, S39N, M50L, I72V, T112V, I113V, T124A, T125A, V201I, L234V, D256E  
DEURF09UG005 DEURF09UG005 None    S17N, I72V, T112V, I113V, T124A, T125A, Q177L, V201I, T206S, L234I, D256E, V260I  
DEURF09UG014 DEURF09UG014 None    K14R, M22I, S24N, V31I, M50I, I60M, I72V, P90S, T112V, I113V, T124A, T125A, V126F, K127R, K136Q, F139Y, D167E, K173R, V201I, K211R, S283G, D288N  
DEURF10DZ001 DEURF10DZ001 None    K14R, S24G, S57G, L101I, T112V, S119P, T124A, T125A, G134N, I135V, K136T, V201I, T206S, Q221R, L234V, D256E, S283G  
DEURF10KE001 DEURF10KE001 None    K14R, V31I, I72V, L74I, L101M, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, S255SN, S283G  
DEURF10UG007 DEURF10UG007 None    E11D, D41N, M50L, I72V, L101I, T112V, I135V, F181L, V201I, S283G  
DEURF10UG008 DEURF10UG008 None    S17N, L45V, M50L, I72V, T112V, I113V, T124A, T125A, D167E, V201I, L234I, S255N, S283G  
DEURF10UG011 DEURF10UG011 None   T97A K14R, I60M, I72V, L101I, T112V, I113V, T124A, T125A, V126F, K173R, I182V, V201I, S283G  
DEURF10UG012 DEURF10UG012 None    K14R, V31I, V75I, I84M, L101I, T112V, I113V, T124A, T125A, V201I, T206S, T218I, L234I, I251L, D256E, A265V, D279G  
DEURF11RW001 DEURF11RW001 None    E13D, M50I, T112V, T124N, K136Q, V201I, T218I, L234I, A265V, R269K, D278A  
DEURF11UG002 DEURF11UG002 None    K14R, A21T, V31I, I72V, T112V, I113V, T124A, V126F, G134N, I135V, V201I, K211R, Y227F, L234I, D253H, D256E  
DEURF11UG004 DEURF11UG004 None    K14R, S17N, I72V, L101I, T112V, I113V, T124A, T125A, V165I, V201I, T206S, L234I, I268L, S283G  
DEURF11UG006 DEURF11UG006 None    K14R, A21T, V31I, M50I, I72V, T112V, I113V, T124A, T125A, V126F, G134S, I135V, K136Q, D167E, K173R, V201I, K211R, K219N, N222K, L234I, S283G D3N