<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Amogne (2016)
Title Phylogenetic analysis of Ethiopian HIV-1 Subtype C near full-length genomes reveals high intrasubtype diversity and a strong geographical cluster.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 133
NumPts 133
Subtype C, Unknown, B

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 133 Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
ET1 ET1 None None   V35T, T39D, S48T, V60I, K101Q, D121Y, K122E, I135R, T139A, S162A, K173A, D177E, T200A, Q207E, R211K  
ET100 ET100 None None   K20R, V35T, E36A, T39E, S48T, V60I, K103R, K122E, D123G, I135T, S162C, K173A, D177E, G196K, T200A, Q207E, L210LS  
ET101 ET101 None None   K32R, V35K, T39E, S48T, V60I, K122E, D123S, K173A, Q174K, D177E, T200E, Q207DEKN, R211K  
ET102 ET102 None None   V35T, E36A, T39E, S48T, K102KQ, K122E, D123DG, K173A, Q174K, D177E, G196K, T200A, I202V, Q207E, R211K K65KM 
ET107 ET107 None None   K20KR, V35T, E36M, T39E, K43Q, K122E, D123S, K173AT, D177E, T200A, Q207E, R211K P140PS 
ET108 ET108 None None N348I  T27S, V35T, E36A, T39E, S48T, V60I, K122E, D123S, I135T, I142V, K173A, D177E, G196R, T200A, I202V, Q207E, R211K, V245Q, E248V, A272P, K277R, L279M, T286A, E291D, V292I, I293V, Q334C, R356K, M357L, G359T, T377M, T386I, K390R, A400T, E404D, E413D, I434M, A437V, T450N, L452I, L469I, D471E, T477A, H483Q, L491P, K512Q, S519N, I526L, A534S, A554K  
ET111 ET111 None None   V35T, E36A, T39E, K122E, D123S, E138A, A158S, S162C, K173A, Q174K, D177G, T200E, Q207G, R211K  
ET113 ET113 None None   V8VI, V35M, E36A, T39E, S48T, D121H, K122E, D123DGNS, K173T, Q174K, D177E, G196K, T200A, Q207E, R211K  
ET115 ET115 None None   V35T, T39E, A98S, K122E, D123S, I142V, K173A, Q174K, D177E, I178L, T200A, Q207E, R211K, V245Q, D250E, S251C, A272P, V292I, I293V, Q334P, G335D, R356K, M357R, G359T, V365I, Q367M, I375V, A376G, T377Q, K390R, A400T, E404D, E413D, E432D, I434L, A437V, L452I, T477A, Q480K, H483Q, L491S, S519N, K527T, K530R, V531I, A534S, A554S  
ET117 ET117 None None   V35T, K49R, V60VI, K122E, D123S, A158S, I159V, K173S, D177E, Q207A Q91Q*, A98AT 
ET118 ET118 None None   K20R, V35T, E36A, T39E, S48T, T69S, K122E, D123S, I135T, A158S, T165I, K173A, D177E, T200A, E204D, L205*, R211K  
ET119 ET119 None None   V35T, K49R, K122E, D123S, A158S, I159V, K173S, D177E, Q207A, T240P, V245E, A272P, E291D, V292I, I293V, K311R, D324E, Q334Y, G335D, R356K, M357R, G359T, A371V, I375V, T377M, K390R, K395R, E404D, V435A, L452I, L469F, D471E, H483Q, L491A, A508S, L517I, S519N, K530R, A534S, A554S, I556V  
ET123 ET123 None None   K20R, V35T, E36A, T39E, K102Q, K122E, D123G, E138A, A158AS, T165I, K173A, D177E, I178M, T200A, Q207D, R211K  
ET124 ET124 None None   V35T, E36A, T39E, A98S, K122E, D123G, A158S, K173A, D177E, I178V, T200A, Q207E, V245Q, A272P, T286A, E291D, V292I, Q334H, G335D, R356K, M357R, G359T, K390R, A400T, F416Y, V435A, L452I, R461K, Q464H, D471E, Q480H, H483Q, L491S, L517I, S519N, K527N, K530R, A534S, A554S  
ET125 ET125 None None   K20R, V35T, T39K, S48T, V60VI, T107TS, K122E, D123S, T165TI, K173A, T200A, I202IV, Q207E Q91Q* 
ET127 ET127 None None   V8I, V35T, T39E, E40D, K49R, V90I, K122E, A158S, K173A, T200A, I202V, Q207E, R211K A98ST 
ET128 ET128 None None   T7P, M16V, A33T, V35E, E36T, T39D, K122E, D123G, I135V, I159V, K173T, D177E, I178M, T200A, Q207E, R211K, T240P, P243L, V245Q, A272P, K277R, T286A, E291D, V292I, I293V, P294T, K311R, D324E, Q334N, G335D, I341V, R356K, M357R, G359T, K366R, K374R, T377Q, T386I, K390R, E404D, Q428R, V435A, L452I, V466I, L469I, D471E, L491S, L517V, S519N, K527N, K530R, A534S, A554S V10P, L12V, K13T, P14V, G15R, D17N, K20P, W24G, L26Q, E29Q, K30R, K32L, C38Y, E40Y, Y232F, L234F, L246F, I257F 
ET129 ET129 None None   V35T, E36A, T39E, S48ST, K122E, A158S, K173A, Q174K, D177E, T200A, Q207E, R211K  
ET130 ET130 None None   V35T, E36A, T39E, K43Q, I50V, A98S, K122E, D123G, A158S, K173A, Q174K, D177E, T200A, Q207E, R211K, V245Q, A272P, K277R, T286A, E291D, Q334H, G335D, R356K, M357R, G359T, K390R, E404D, E415D, V435A, N447S, L452I, V466I, D471E, H483Q, L491S, L517I, K530R, A534S, A554S  
ET131 ET131 None None   V8VI, K32E, V35T, E36A, T39EK, K43KE, K49R, V60I, A98S, K101Q, K122E, I135R, E169A, K173A, D177E, T200A, E203D, Q207E, R211K L120LS 
ET135 ET135 None None   K20R, V35T, T39E, S48T, V60I, K122E, D123S, A158S, K173A, Q174K, D177E, T200E, Q207E, F214L, V245M, D250E, A272P, K277R, E291D, I293V, H315P, V317A, Q334N, G335D, R356K, G359T, A376S, T377L, T386V, K390R, A400T, E404D, E413D, I434L, V435I, A437V, L452K, V466I, T470D, D471E, T477A, H483Q, L491S, L517I, S519N, K527N, K530R, V531I, A554N K126I, I132G 
ET137 ET137 None None   V35T, E36A, T39E, S48T, K102KR, K122E, D123S, I135R, K173A, Q174K, D177E, T200A, I202V, Q207E, F214L  
ET141 ET141 None None   V35T, E36A, T39E, E40D, K122E, D123S, I135IT, K173T, Q174R, D177E, G196E, Q197K, T200A, Q207E, R211K  
ET142 ET142 None None   P4PS, V35T, T39A, E40ED, S48ST, A98S, K122E, D123N, K173T, D177G, T200A, Q207E, R211K  
ET144 ET144 None None   V35M, E36EA, T39E, S48T, K122E, D123S, A158S, K173A, D177E, T200A, Q207E, R211K  
ET145 ET145 None None   V35T, E36A, T39E, E40D, G45E, K49R, I50V, A158S, K173T, Q174R, D177E, I178V, G196E, T200A, I202V, Q207E, R211K, I244V, V245Q, E248D, D250E, A272P, K281R, E291D, V292I, I293V, P294A, Q334H, G335D, R356K, M357R, R358K, G359A, K366R, T377Q, V381I, K390R, A400T, E404D, V435A, A446S, L452I, K454R, L469I, D471E, H483Y, L491S, S519N, K527N, E529D, K530R, A534S, A554S  
ET147 ET147 None None   V10I, K11E, D17G, V21I, V35T, E36A, T39E, V60I, K122E, D123S, I135T, K173T, Q174K, D177E, I178V, G196E, T200A, Q207E, V245Q, A272P, K275R, L283I, E291D, V292I, I293V, P294T, Q334H, G335D, R356K, M357R, R358K, G359A, A371V, T377Q, K390R, A400G, E404D, V435A, L452M, V466I, L469I, T470N, D471E, H483Y, L491S, L517I, S519E, K530R, A534S, A554T K13E, L279F, C280G, L349V 
ET148 ET148 None None   V35K, T39E, S48T, K122E, D123S, K173A, Q174K, D177E, G196K, T200E, I202V, Q207E, V245Q, E248N, A272P, K277R, T286A, E291D, V292I, V317A, Q334N, G335D, R356K, G359T, T377Q, T386I, K390R, A400T, E404D, E413D, I434M, V435A, A437V, L452A, V466I, D471E, T477A, H483Q, L491S, K530R, V531I, A534S, A554N  
ET149 ET149 None None   T27S, V35T, A98S, K122E, D123G, K173A, D177E, G196K, T200E, Q207E, V245Q, A272P, K277R, L279M, T286A, E291D, I293V, E297A, Q334D, G335D, R356K, G359T, T377M, K390R, A400M, E404D, E413D, V435A, V466I, D471E, L491S, E492Q, L517I, S519N, K527N, A534S, A554S  
ET150 ET150 None None  A98G K20R, V35I, E36A, T39E, S48T, V60I, K122E, D123S, I142V, A158S, K166R, K173A, D177E, E194D, G196K, T200A, Q207G, V245Q, E248D, D250E, A272P, K277R, L279M, T286A, E291D, V292I, I293V, Q334N, G335D, R356K, G359T, V365I, A376G, T377M, T386I, K390R, A400I, E404D, E413D, I434V, V435A, A437V, L452V, V466I, V467I, S468T, D471E, T477A, H483Q, G490E, L491S, S519N, K530R, A554S Q258K 
ET153 ET153 None None   V35T, E36A, T39D, S48T, K102Q, K122E, D123G, S162C, K173A, D177E, I178L, T200A, Q207E, R211K V189VL 
ET155 ET155 None None   S3T, K11E, K22R, K32I, V35K, E36A, T39E, S48T, K122E, A158S, K173A, D177E, G196K, T200A, Q207N, R211K, V245Q, K249R, A272P, K277R, L279M, T286A, E291D, I293V, A327V, Q334H, G335D, R356K, M357R, G359T, T377M, T386I, K388R, K390R, A400T, E404D, I434V, L452K, V466I, D471E, T477A, I482V, H483Q, S519N, K530R, A534S, V548I, A554N V10M, K13H, K20L, Q23R, P25L, E28L, K30N 
ET157 ET157 None None   V35T, T39E, S48T, K122E, A158S, K173A, Q174K, D177E, G196K, T200A, I202V, Q207E, R211K D192DV 
ET159 ET159 None None   T27S, V35T, T39E, S48T, K122E, D123N, K166R, K173A, D177E, T200A, Q207A, R211K, V245Q, E248N, D250E, A272P, K277R, L279M, T286A, E291D, V292I, I293V, P294Q, L301F, I329L, Q334N, G335D, R356K, G359T, I375V, A376S, T377M, T386I, K390R, A400T, E404D, V435A, V466I, V467I, D471E, H483Q, L491S, S519N, K527N, A534S, A554K, K558R  
ET160 ET160 None None   V35T, E36A, T39E, S48T, T69S, K122E, D123S, K166R, K173A, D177E, T200A, Q207E, R211RK C38W, T128S, F171FS, G196KNRS 
ET162 ET162 None None   V35T, E36A, T39E, S48T, K122E, D123S, A158S, K173A, Q174R, D177E, T200A, Q207E  
ET163 ET163 None None   V35T, T39E, S48T, K122E, D123S, A158AS, I159IV, K173A, Q174K, N175NH, D177E, T200A, Q207E, R211RK  
ET166 ET166 None None   V35T, E36A, T39E, A98S, K122E, D123S, I135V, I142L, Y144F, K173A, Q174K, D177E, T200A, Q207E  
ET167 ET167 None None   E28K, K32E, V35T, E36A, T39E, A98S, K122E, I135T, K173A, Q174K, D177E, T200A, I202V, Q207E, R211K, P243T, V245Q, K249Q, A272P, T286A, E291D, V292I, I293V, I309V, Q334H, G335D, R356Q, M357R, R358K, G359T, T377R, T386I, K390R, A400T, E404D, F416C, V435I, L452I, V466I, V467I, D471E, H483Q, L491S, K512S, L517I, K530R, A534S, A554S  
ET168 ET168 None None   K20R, V35T, E36A, T39E, E40D, K49R, I50V, V60I, K122E, I135T, E138A, S162C, K173A, P176Q, D177G, T200A, I202V, Q207E, R211K, F214L  
ET169 ET169 None None  K101N V35T, E36A, T39D, K122E, D123S, E169D, K173E, Q174K, D177E, I178L, G196E, Q197K, T200A, Q207E, R211RK L80LF 
ET17 ET17 None None   V35T, E36V, T39D, S48T, V60I, K122E, D123S, K173A, Q174R, V179T, T200A, Q207AE, R211KQ, F214L  
ET170 ET170 None None   V35T, E36A, T39K, K43E, V60I, K122E, D123S, K173A, Q174K, D177E, T200A, Q207E, R211K, F214L  
ET171 ET171 None None   V35T, E36A, T39E, S48T, D121H, K122E, K173T, D177E, T200A, Q207A, R211K, V245Q, D250E, A272P, V292I, I293V, P294T, I326V, Q334L, G335D, R356K, M357R, G359T, T377M, K390R, E404D, K431T, V435A, L452M, V466I, D471E, H483Q, L491S, L517I, S519N, K527Q, K530R, A534S, V548I, A554S  
ET172 ET172 None None D67P, K70D, L74V, V75K  S68G, R83K, K122E, D123G, A158S, K173A, N175H, D177E, V179I, T200A, Q207E, R211K I63V, K65L, T69M, W71G, R72P, D76Q, F77W, R78P, E79L, L80T, N81E, K82E, T84I, Q85K, D86A 
ET173 ET173 None None   K20KR, V35T, T39G, K102KR, K122E, D123G, K173T, Q174K, D177E, I178IM, T200A, Q207E  
ET174 ET174 None None   V35T, E36A, T39E, E40D, S48T, V60VI, T69S, K122E, D123S, I135IR, K173A, Q174K, D177E, I178M, T200A, Q207E, R211K  
ET175 ET175 None None   V35T, E36A, T39D, E79D, K122E, D123S, I135T, I142V, K173A, D177E, T200A, Q207E, R211K  
ET18 ET18 None None   V35T, E36A, T39E, E40D, K49R, K122E, I135T, K173A, D177E, T200A, K201KR, Q207E, R211K  
ET183 ET183 None None   K32KQ, V35T, E36A, T39Q, K43Q, K122E, D123S, A158AS, K173A, Q174K, D177E, T200A, Q207E Q91Q*, H96HQ, A98AT 
ET187 ET187 None None   T27S, V35T, E36A, T39E, S48T, K122E, K173T, D177E, G196K, T200A, Q207A, L210S, R211K  
ET190 ET190 None None   V35T, E36A, T39D, S48T, V60I, K122E, D123DN, I135T, K173A, D177E, G196K, T200A, Q207E, R211RK  
ET191 ET191 None None K70N  V35T, E36A, T39E, S48T, V60I, K122E, D123S, K154E, K166R, K173A, D177E, T200A, Q207E F77C 
ET192 ET192 None None   V35T, T39G, A98S, K122E, D123S, I142V, K173A, Q174K, D177E, I178L, T200A, Q207E, L210S, R211K  
ET193 ET193 None None   V35T, T39TAEK, S48ST, V60VI, A98S, K122E, D123S, I135R, T139TI, I142IL, K173T, Q174R, D177E, I178L, T200A, Q207AE, R211K, F214L  
ET2 ET2 None None   V35T, E36A, T39D, A98S, K101R, K122E, D123G, I142V, K166R, K173A, D177N, T200A, Q207E, R211K  
ET20 ET20 None None T69G  V35T, E36A, T39E, E40D, K122E, D123G, I135V, K173T, D177E, T200A, Q207E, R211K K73Q 
ET23 ET23 None None  L100LI V10VL, V35T, T39E, S48T, V60I, K122E, I135T, K173A, Q174K, D177E, G196K, Q197E, T200A, I202V, Q207E, R211K  
ET24 ET24 None None  V179AD V35T, E36A, T39E, V118I, K122E, D123G, I135T, A158S, K173KN, Q174R, G196E, T200A, K201KT, I202V, Q207E, R211K, F214FL V111VA, E194E* 
ET25 ET25 None None   V35T, T39E, T58TI, K102KR, K122E, D123S, I135R, K173AT, D177E, T200A, I202V, E204K, Q207E, R211K, F214FL  
ET27 ET27 None None   K20KR, V35T, E36A, T39E, K122E, D123G, A158S, K173A, D177E, T200A, Q207E, R211K  
ET30 ET30 None None   V35T, T39K, K43KE, S48T, K122E, D123S, I135T, S162A, K173A, D177E, G196K, Q197E, T200A, Q207E  
ET31 ET31 None None   V35T, T39E, S48T, K122E, D123S, A158S, K173A, Q174K, D177E, T200A, Q207E, R211K  
ET32 ET32 None None   V35M, E36A, T39E, S48T, K122E, D123DG, A158S, K173A, Q174K, D177E, T200A, Q207E  
ET34 ET34 None None   V35T, E36EA, T39E, S48T, K122E, D123S, A158S, K166R, K173A, D177E, T200A, Q207E G196NS 
ET35 ET35 None None   K20R, V35T, E36A, T39E, S48T, K122E, A158S, K173A, Q174K, D177E, I178M, G196K, T200A, Q207E, R211K  
ET36 ET36 None None  K101E K20R, V35I, T39A, A98S, K122E, D123S, I135R, I142M, S163N, K173A, T200A, K201R, Q207E, R211K  
ET43 ET43 None None   V35T, E36A, T39E, E40D, A158S, K173A, Q174K, T200E, Q207E, R211K  
ET45 ET45 None None   V35T, T39E, S48T, K66KR, K122E, D123G, K166R, K173T, D177E, T200A, Q207E  
ET46 ET46 None None   V35T, E36A, T39E, S48E, K122E, D123S, K173A, Q174K, D177E, T200A, Q207E, R211K  
ET47 ET47 None None   V35T, E36A, T39E, S48T, K122E, D123S, I135T, E169D, K173A, Q174K, D177E, T200A, Q207E, R211K  
ET49 ET49 None None   V35T, T39E, S48T, K122E, D123S, K173A, D177E, T200A, E204EK  
ET53 ET53 None None   V35T, E36A, T39E, E40D, V60VI, K122E, D123S, I135T, I142V, K173A, P176PS, D177E, T200A, Q207E  
ET54 ET54 None None   V35T, E36A, T39E, S48T, K122E, D123S, I142V, A158S, K173AT, D177E, T200A, Q207E, R211K  
ET58 ET58 None None   V21VI, V35T, T39E, K43R, S48T, K122E, D123S, A158AS, K166KR, K173A, Q174KN, D177E, D192N, T200A, Q207E  
ET61 ET61 None None   K20R, V35M, E36A, T39E, S48T, K122E, D123G, K173T, T200A, Q207N, R211K  
ET62 ET62 None None   V35T, E36A, T39E, E40D, K122E, D123DG, A158S, K173A, Q174K, D177E, T200A, Q207E T128TI, Q151QR 
ET63 ET63 None None   T27S, V35T, E36A, T39E, S48T, K122E, A158S, K166R, K173A, G196K, T200A, Q207E, R211K  
ET64 ET64 None None   E28EK, K32KE, V35T, E36EA, T39E, S48T, A98S, K122E, D123DGNS, K166R, K173A, Q174E, D177E, I178L, T200A, E204K, Q207E  
ET65 ET65 None None   K20R, E28D, V35T, E36A, T39E, K122E, D123DGNS, I135T, I142IT, K173A, D177G, I195IL, T200A, Q207E, R211K V60VIM 
ET66 ET66 None None   V21VI, V35T, E36A, T39E, A158S, K173A, D177E, V179VI, I195IL, T200A, Q207E  
ET67 ET67 None None   K20R, V35T, E36A, T39E, E40D, K43R, I50M, V90I, K122E, D123S, I142T, A158S, K173T, Q174K, D177E, T200A, Q207E, R211RK  
ET68 ET68 None None   V35T, T39A, E40ED, A98S, K122E, A158S, K173A, Q174QK, D177DE, Q207E  
ET70 ET70 None None   V35T, E36A, T39E, S48T, K122E, D123S, K173A, Q174QK, D177E, T200A, Q207E, R211RK  
ET73 ET73 None None   E28K, K32E, V35T, T39E, S48T, K122E, D123NS, K166KR, K173T, D177E, I178M, G196K, T200A, Q207E, R211K  
ET75 ET75 None None   V35T, T39AE, A98S, K101KR, K122E, D123NS, A158S, I159IV, K173A, Q174K, D177E, T200A, Q207G, R211K Q91Q* 
ET77 ET77 None None   K11KT, K20R, V35T, E36EA, T39E, K122E, D123NS, I135T, F171Y, K173A, Q174K, D177E, G196K, T200A, I202V, Q207DE, R211RK  
ET78 ET78 None None   T27S, V35T, E36A, T39E, S48T, K122E, D123S, S162C, K173A, D177E, T200A, Q207E  
ET8 ET8 None None   V35T, E36A, T39E, S48T, K49KR, V60I, K122E, D123S, I135T, K173A, Q174K, D177G, T200A, Q207E Q91QH 
ET80 ET80 None None   V35T, T39E, K122E, D123S, I135T, S162C, K173A, Q174K, D177E, T200A, Q207E Q91Q*, A98AT 
ET81 ET81 None None   T27S, V35T, E36A, T39E, A98S, K122E, D123G, K173IT, Q174K, T200A, Q207E, R211AV  
ET82 ET82 None None   K20KR, T27S, V35T, E36A, T39D, S48T, V60I, K122E, I135IV, S162A, K173A, Q174K, D177E, I178L, T200A, Q207E, R211K  
ET84 ET84 None None   E6EDKN, V35T, E36A, T39E, S48T, K122E, D123DE, K173N, D177E, G196K, T200E, Q207E, R211K  
ET85 ET85 None None M184R  V35T, E36A, T39E, K43R, S48T, K122E, I142F, A158S, K173A, D177E, Y181*, G196K, T200A, I202L, E203D, Q207E, R211K W153S, Q174P, N175L, Q182L, Y183E, S191F, L209I 
ET86 ET86 None None   V35T, E36A, T39D, S48T, K122E, D123GS, I135T, K173A, D177E, G196K, T200A, I202V, Q207E, L210S  
ET88 ET88 None None   V8I, V35T, E36A, T39E, E40D, K104KR, K122E, D123GS, K173A, D177E, T200A, Q207N  
ET93 ET93 None None   V35T, E36A, T39E, E40D, K43R, K122E, D123S, K173T, Q174K, D177E, T200A, I202IV, Q207E  
ET96 ET96 None None   V35T, E36A, T39E, K122E, D123S, I135T, K173A, D177EG, I178LM, T200A, I202V, Q207E, R211RK  
ET97 ET97 None None  V179D V35T, E36A, T39E, E40D, K122E, D123DG, A158S, K173A, Q174K, D177E, T200TA, Q207E  
ET98 ET98 None None   V35T, E36M, T39E, A98S, K101R, K122E, I135T, A158S, K166R, K173A, P176PS, D177E, Q207E Y127YH