<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Amogne (2016)
Title Phylogenetic analysis of Ethiopian HIV-1 Subtype C near full-length genomes reveals high intrasubtype diversity and a strong geographical cluster.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 24
NumPts 24
Subtype C, A

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
ET104 ET104 None    S17N, S24D, D25E, V31I, I72V, F100Y, L101I, T112V, S119P, T124S, T125A, D167E, V201I, T218L, L234I, A265V, R269K, D278A V281M, S283G 
ET106 ET106 None    D25E, V31I, L101I, T112V, T124S, T125A, G134D, K136Q, V165I, D167E, V201I, L234I, R269K, D278A S283G 
ET108 ET108 None    V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, K215N, I217V, T218L, L234I, A265V, R269K, D278A  
ET115 ET115 None    V31I, M50I, A91S, L101I, T112V, T124G, T125A, K136Q, V201I, T206S, K215N, Q216K, T218L, K219Q, L234I, R269K, D278A S283G 
ET119 ET119 None    S24N, D25E, V31I, T112V, T124N, T125A, V126M, G163E, D167E, K173R, V201I, Q216H, K219N, N222K, L234I, V260I S283G 
ET122 ET122 None    K7R, D25E, V31I, L45V, M50T, L101I, T112V, I113V, T124A, T125A, K136Q, V201I, K215N, T218I, Q221R, L234I, D256E, D278A S283G 
ET124 ET124 None    D25E, V31I, I72V, I84M, F100Y, L101I, T112V, T124N, T125A, G163E, K215N, T218L, L234I, D278A G192A, S283G 
ET126 ET126 None    S24N, D25E, V31I, I84M, L101I, T112V, T124A, T125A, K136H, V165I, K188R, V201I, K215N, L234I, A265V, R269K, D278A S283G 
ET128 ET128 None    S24N, D25E, M50T, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, K173R, V201I, T218I, I220V, L234I, D278A S283G 
ET130 ET130 None    S17N, V31I, F100Y, L101I, T112V, T124N, T125A, G163E, K173R, V201I, K215N, T218L, L234I, R269K, D278A  
ET135 ET135 None    K7Q, E11D, K14R, S24N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A S283G, R284G, D286N 
ET136 ET136 None    I60T, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T210A, T218I, L234I, R269K, D278A S283G 
ET145 ET145 None    S17N, D25E, V31I, L68M, L74I, I84M, F100Y, L101I, T112V, T124Q, T125A, D167E, K215N, T218L, L234I, A265V, D278A  
ET147 ET147 None    D6E, D25E, S39M, L45V, L101I, T112V, T124N, D167E, K173R, K188R, I191L, V201I, K215N, T218L, L234I, D278A S283G 
ET148 ET148 None    K7Q, V31I, I72V, Q95S, F100Y, L101I, T112V, T124A, T125A, K136Q, V150A, D167E, V201I, L234I, R269K, D278A S283G 
ET149 ET149 None    V31I, M50I, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A S283G 
ET150 ET150 None    D25E, N27H, V31I, M50I, K71Q, A91T, L101I, T112V, S119R, T124S, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
ET154 ET154 None    K14R, S24N, D25E, V31I, I60V, L101I, S119T, T124A, T125A, K136Q, D167E, V201I, E212Q, K215N, Q216K, T218L, K219Q, L234I, D278A S283G 
ET155 ET155 None    E11D, S24N, D25E, V31I, M50I, L101I, T112V, K136Q, D167E, V201I, T218I, L234I, A265V, D278A S283G 
ET159 ET159 None    S17N, M50I, I72V, E96D, L101I, T124A, T125A, K136Q, Q177L, G193E, V201I, T218I, L234I, A265V, R269K, D278A S283G, E287A 
ET164 ET164 None    K14R, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K215N, T218L, L234I, R269K, D278A S283G 
ET165 ET165 None   V151I V31I, I72V, F100Y, L101I, T112V, S119T, T124A, T125A, D167E, V201I, T206S, K215N, T218L, L234I, A265V, R269K, D278A S283G 
ET167 ET167 None    D6E, D25E, V31I, I60V, I84M, F100Y, L101I, T112V, T124N, G163E, V201I, I203M, K215N, Q216K, T218L, K219N, L234I, D278N  
ET171 ET171 None    S24N, D25E, T112V, T124S, K136Q, V165I, K173R, V201I, K215N, T218L, I220V, L234I, A265V, I268L, R269K, D278A S283G