Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Amogne (2016)
Title Phylogenetic analysis of Ethiopian HIV-1 Subtype C near full-length genomes reveals high intrasubtype diversity and a strong geographical cluster.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 24
NumPts 24
Subtype C, A

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
ET104 ET104 None    S17N, S24D, D25E, V31I, I72V, F100Y, L101I, T112V, S119P, T124S, T125A, D167E, V201I, T218L, L234I, A265V, R269K, D278A, V281M, S283G  
ET106 ET106 None    D25E, V31I, L101I, T112V, T124S, T125A, G134D, K136Q, V165I, D167E, V201I, L234I, R269K, D278A, S283G  
ET108 ET108 None    V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, K215N, I217V, T218L, L234I, A265V, R269K, D278A  
ET115 ET115 None    V31I, M50I, A91S, L101I, T112V, T124G, T125A, K136Q, V201I, T206S, K215N, Q216K, T218L, K219Q, L234I, R269K, D278A, S283G  
ET119 ET119 None    S24N, D25E, V31I, T112V, T124N, T125A, V126M, G163E, D167E, K173R, V201I, Q216H, K219N, N222K, L234I, V260I, S283G  
ET122 ET122 None    K7R, D25E, V31I, L45V, M50T, L101I, T112V, I113V, T124A, T125A, K136Q, V201I, K215N, T218I, Q221R, L234I, D256E, D278A, S283G  
ET124 ET124 None    D25E, V31I, I72V, I84M, F100Y, L101I, T112V, T124N, T125A, G163E, K215N, T218L, L234I, D278A, S283G G192A 
ET126 ET126 None    S24N, D25E, V31I, I84M, L101I, T112V, T124A, T125A, K136H, V165I, K188R, V201I, K215N, L234I, A265V, R269K, D278A, S283G  
ET128 ET128 None    S24N, D25E, M50T, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, K173R, V201I, T218I, I220V, L234I, D278A, S283G  
ET130 ET130 None    S17N, V31I, F100Y, L101I, T112V, T124N, T125A, G163E, K173R, V201I, K215N, T218L, L234I, R269K, D278A  
ET135 ET135 None    K7Q, E11D, K14R, S24N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A, S283G, R284G, D286N  
ET136 ET136 None    I60T, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T210A, T218I, L234I, R269K, D278A, S283G  
ET145 ET145 None    S17N, D25E, V31I, L68M, L74I, I84M, F100Y, L101I, T112V, T124Q, T125A, D167E, K215N, T218L, L234I, A265V, D278A  
ET147 ET147 None    D6E, D25E, S39M, L45V, L101I, T112V, T124N, D167E, K173R, K188R, I191L, V201I, K215N, T218L, L234I, D278A, S283G  
ET148 ET148 None    K7Q, V31I, I72V, Q95S, F100Y, L101I, T112V, T124A, T125A, K136Q, V150A, D167E, V201I, L234I, R269K, D278A, S283G  
ET149 ET149 None    V31I, M50I, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A, S283G  
ET150 ET150 None    D25E, N27H, V31I, M50I, K71Q, A91T, L101I, T112V, S119R, T124S, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
ET154 ET154 None    K14R, S24N, D25E, V31I, I60V, L101I, S119T, T124A, T125A, K136Q, D167E, V201I, E212Q, K215N, Q216K, T218L, K219Q, L234I, D278A, S283G  
ET155 ET155 None    E11D, S24N, D25E, V31I, M50I, L101I, T112V, K136Q, D167E, V201I, T218I, L234I, A265V, D278A, S283G  
ET159 ET159 None    S17N, M50I, I72V, E96D, L101I, T124A, T125A, K136Q, Q177L, G193E, V201I, T218I, L234I, A265V, R269K, D278A, S283G, E287A  
ET164 ET164 None    K14R, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K215N, T218L, L234I, R269K, D278A, S283G  
ET165 ET165 None   V151I V31I, I72V, F100Y, L101I, T112V, S119T, T124A, T125A, D167E, V201I, T206S, K215N, T218L, L234I, A265V, R269K, D278A, S283G  
ET167 ET167 None    D6E, D25E, V31I, I60V, I84M, F100Y, L101I, T112V, T124N, G163E, V201I, I203M, K215N, Q216K, T218L, K219N, L234I, D278N  
ET171 ET171 None    S24N, D25E, T112V, T124S, K136Q, V165I, K173R, V201I, K215N, T218L, I220V, L234I, A265V, I268L, R269K, D278A, S283G