Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Youngpairoj (2014)
Title Reference panel of cloned HIV-2 plasmid DNA for nucleic acid assay development, evaluation, and quality monitoring.
Citation J Clin Virol
SelectedGene RT
SelectedSpecies HIV2
SelectedType Clinical
NumIsolates 11
NumPts 11
Host Human

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
310072 310072 None None   M11E, K20R, L21I, T27S, K28R, K64R, K66R, K102E, E122P, D123N, P126Q, H162Y, E169D, K176S, R200K, G211D, L212M, D218E, H228K, K249R, Y271F, K277R, L279I, R307K, S311E, H317S, E322G, E324P, E334A, E344G, K347R, R385E, E399D, N404D, V423I, I434L, P435E, F440Y, R448K, K492Q, N519T, Q520R, I542L I8V, I10V, E32L, I63V, F87V, I90V, H121D, V135I, T163S, Q166K, T194S, L203S, Y227F, T237K, Q248E, R281K, E304Q, Q320K, K323I, D332N, Q333L, I365V, Q370H, K388V, I397T, D403T, D413E, F427Y, G431K, A437R, Q449T, K468M, M484L, T487Q, S506I, S508A, S513T, K516P, E523K, A534G 
310319 310319 None None   K4S, P14E, L21I, T27S, E32Q, T58S, K66R, D86E, K102S, E122P, P126Q, H162Y, E169D, K176S, I179T, R200K, G211N, L212M, D218E, H228Q, I251V, Y271F, K277R, L279I, R307K, S311E, H317S, E322G, E324P, E334A, E344G, R385E, I386V, K388I, E399D, N404D, V423I, I434L, P435E, A437V, F440Y, K468P, K492Q, I542L, V559I V5I, I8V, I10V, M11K, F61L, I90V, R104K, H121D, I145L, T163S, R165G, Q166K, I189V, T194S, L203S, Y227F, T237K, Q248E, Q320K, K323V, D332N, Q333L, E345D, I365V, Q370H, I397T, D403T, D413E, F427Y, G431K, Q449T, M484L, T487Q, S506I, S508A, S513T, K516P, N519K, Q520T, A534G 
60415K 60415K None None E219D  K64R, A138S, H162Y, K176T, I251A, E297D, R307K, E334S, I341V, E344G, A437T, K468V, S506V, S508G, V559I E48G, E250D, M287L, E345D, I365V, I397T, K463R, S515N, K516R 
7312A 7312A None None   M11Q, L21I, T27S, K35R, D86E, K102E, L109I, E122P, P126Q, H162Y, E169D, K173R, I179T, R200K, G211D, L212M, D218E, H228Q, L246I, K249R, I251V, Y271F, K277R, L279I, R284K, L303M, R307K, H317S, E322G, E324P, E334A, E344G, R385Q, E399D, N404D, I434L, P435E, G436K, A437V, F440Y, K468P, K492Q, S506V, S508G, Q520K, I542L V5I, I8V, I10V, E32L, P51S, I90V, I118V, H121D, V135I, T163S, Q166K, K176N, I189V, T194S, L203S, Y227F, T237K, Q248E, E304Q, S311G, Q320K, K323V, D332N, Q333L, E345D, I348V, I365V, L367I, Q370H, K388M, I397T, D403T, D413E, F427Y, V430I, G431K, Q449T, K463R, M484L, T487Q, S513T, K516P, A534G 
77618 77618 None None   M11T, D17E, K20R, E39K, K64R, P126Q, H162Y, I180L, R200K, H228Q, I244L, R307K, E334D, V357I, A437T, K468V, S506V, E524D V5I, I10V, R22K, R104K, K176P, D195G, Y227F, L270I, V329I, D332S, I365V, I397T, D413E, A426T, K463R, T487A, I526T, I531V 
7924A 7924A None None E219D  K64R, P126Q, H162Y, K176Q, I251T, E334D, I341V, E344G, I397V, F440Y, V458I, K468V, V493A, S506V, S508G V5I, V167I, V201A, E233K, L270I, R281K, M287L, T288A, E322D, I365V, G431K, K463R, S515N, K516R 
A1958 A1958 None None   M11T, K28R, T58S, K64R, P126Q, H162F, K176Q, H228Q, R307K, E334D, E344G, V372I, N404D, A437V, K451R, V458I, K468V, A477S, S506V, S508G V2I, I10V, E49I, P51S, Y56F, T163M, V167I, R281K, M287L, E304Q, H317C, V329I, I365V, I397T, G431K, G436D, K463R, K467R, L486V 
A2270 A2270 None None   K64R, V111I, P126Q, H162Y, K173R, R200K, H228R, I251V, E297D, R307K, E334D, I341V, E344G, K353R, N404D, A437T, V458I, K468V, V493A, S506V, S508G V5I, P51S, S134A, V167I, K176P, W235R, L270I, V293I, E322D, I365V, I397T, G431K, K463R, E480Q, I496V, K516R 
GB122 GB122 None None   K64R, P126Q, H162Y, K176Q, H228R, I251V, Q294L, K323R, E334D, E344G, A437T, V458I, K468V, S506V, S508G V5I, I10V, Y56F, Q166H, V167I, L270I, M287L, E322D, E324D, I365V, I397T, G431K, K463R, K467R, I531L 
GB87 GB87 None None  I181V M11T, K43R, H121C, P126Q, H162Y, I180L, H228R, I251V, R307K, Q330H, E334D, E344G, V357I, N404D, G431R, P435L, V458I, D464N, V493A, S508G, I517M, K528R V2I, V5I, I10V, V167I, K176P, L270I, K358R, I365V, I397T, K463R, K468M, L486I, S506I 
SLRHC SLRHC None None   E6Q, K43R, D86E, V111I, P126Q, H162Y, I180L, H228Q, K277R, R307K, E334D, E344G, V458I, K468I, V493A, S506V, S508G, E524G V5I, I10V, L47I, P51S, S117F, V167I, K176P, L270I, H317C, I365V, I397T, G431K, K463R, K467R, T472I, L486I, K516R