Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Pessoa (2016)
Title Ultra-deep sequencing of HIV-1 near full-length and partial proviral genomes reveals high genetic diversity among Brazilian blood donors.
Citation PLoS One
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 184
NumPts 184
Subtype B, C, F, B + F

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 184 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
10BR_MG006 10BR_MG006 None    E11D, S24G, I72V, T124A, V126M, I135V, K156N, V201I, D207E, T218S  
10BR_MG011 10BR_MG011 None   E138D K7R, E10A, S17N, T124A, T125A K156Q 
10BR_MG016 10BR_MG016 None    E10D, V32I, D41N, A49P, I72V, L101I, K156N, V165VI, V201I  
10BR_MG022 10BR_MG022 None    I72V, T125V, K156R, K211R, K215N  
10BR_MG024 10BR_MG024 None    E10D, R20K, I72V, S119G, T122I, T125A, V201I, D256DE  
10BR_MG030 10BR_MG030 None    D6E, E10D, M50T, Q137H, M154I, V201I, L234V, K273R  
10BR_MG032 10BR_MG032 None    E11D, K14R, S24N, D25E, V31I, M50T, L101I, T112M, S119G, T124N, K136Q, D167E, V201I, T206S, T218I, L234I, I251L, D256E, A265V, R269K, D278A  
10BR_MG037 10BR_MG037 None    E11D, K14R, S24N, D25E, V31I, S39C, M50I, L101I, T112V, T124N, K136Q, V201I, K215N, Q216N, T218I, L234I, I251L, S255SN, A265V, R269K, D278A, V281M  
10BR_MG038 10BR_MG038 None    D6T, E10D, E13D, A23V, S39N, M50T, I60V, I72V, L74I, K111R, S119G, T122I, V201I, T218S, D278N  
10BR_MG039 10BR_MG039 None    E10D, M50I, L101I, S119G, T122I, T124N, T125A, I208L, R231K, D253E, S255R, S283G  
10BR_MG041 10BR_MG041 None    E10D, S24G, L28I, M50I, I72V, S119P, T124N, T125V, D253E, D256E  
10BR_MG043 10BR_MG043 None    A21S, L101I, T112I, I113V, T124N, R166K, F181L, R187K, G189R, I203M, T210I, K219N, I220L, N222K, I251L, S283G D25N, D167N, E170K 
10BR_MG044 10BR_MG044 None    E11D, L28I, V37I, S39C, G106A, T112V, S119G, T125V, H171Q, V201I, S283G  
10BR_MG045 10BR_MG045 None    L28I, L45Q, A49P, I72V, S119P, D167E, D256E  
10BR_MG051 10BR_MG051 None    E10D, L45I, M50L, I72V, T124S, K156N, T206S, I208L, E212A, K219N, N222K  
10BR_MG052 10BR_MG052 None   V151I D6E, E11D, S17C, A21S, A23V, V31I, T125A, V126L, I135V, V201I, A205S  
10BR_PE014 10BR_PE014 None    L45I, I72V, T124N, T125A, V126L, I135V, E157Q, K160Q, G193R, V201I, D232E, A265V  
10BR_PE017 10BR_PE017 None    D6T, K7E, E10D, S119P, T122I, T125A, V201VI, T218I, D256E  
10BR_PE019 10BR_PE019 None    Y15F, V31I, L45I, E96D, L101I, T112R, T124N, T125A, K156N, F181L, R231K, S255K  
10BR_PE020 10BR_PE020 None    D6T, K7E, E10D, S119P, T122I, T124A, T125A, V165I, T218I, D256E  
10BR_PE021 10BR_PE021 None    S17N, I72V, T124A, T125A, V126L, K136Q, V201VI, K211Q, I268L  
10BR_PE023 10BR_PE023 None    E11D, D25E, S39C, M50T, L101I, T122I, T124N, K136Q, L158I, V201I, T206S, L234I, I251L, R269K, D278A, S283G  
10BR_PE031 10BR_PE031 None    K14R, S17T, A23V, M50I, K71N, S119R, T125A, K156N, V201I, S283G  
10BR_PE033 10BR_PE033 None    S17N, S24N, M50I, I72V, K111R, T124A, T125A, V126L, T206S, I220L, Y227F  
10BR_PE036 10BR_PE036 None    D6T, K7E, S119P, T122I, T125A, T218I, D256E  
10BR_PE038 10BR_PE038 None    K14R, A21T, S39N, I72V, T124N, T125A, V126L, K219N, I220L, N222K  
10BR_PE040 10BR_PE040 None    D6E, E10D, D25E, V31I, S39N, L45R, L101I, S119G, T122I, T124A, K160N  
10BR_PE043 10BR_PE043 None    D6T, K7E, E10D, I72V, A91S, S119P, T122I, T125A, V126M, S230N, D256E  
10BR_PE044 10BR_PE044 None    V32I, S39C, I72V, T124N, V165I, V201I, I203M, T218I  
10BR_PE045 10BR_PE045 None    S17N, V31I, S39N, I113V, S119G, T124N, T125A, K156N, Y194H, K219N, N222K, S230N  
10BR_PE047 10BR_PE047 None    S17N, V31I, I72V, S119P, T124A, T125A, V126L, V201I, T206S, I208L, T218S, Q221R, N222R, R284G  
10BR_PE048 10BR_PE048 None    V77I, I84M, L101I, T112V, T125A, I135V, L172V, V201I, I208L, E212L, K215N, Q216H, S230N, D256E, I268L  
10BR_PE052 10BR_PE052 None    E11D, A23V, V37I, S39M, M50I, I113V, T124N, T125A, V201I, T206S  
10BR_PE054 10BR_PE054 None    E10D, E11D, V31I, M50I, L101I, I135V, G163E, V201I  
10BR_PE058 10BR_PE058 None  G140GS G163GR E11D, A23V, I72V, K111Q, T112A, T122I, T124A, T125A, G134GR, M154MI, E157EK, G193E, V201VI, L234H, I251V, R269RK, D278N D3DN, G4GR, E13EK, W19W*, G47GR, G52GR, G59GR, G70GR, W131W*, W132W*, R224RQ, R228RK, W235W*, G237GR, W243LS, G272GR 
10BR_PE061 10BR_PE061 None   V54I S17N, R20K, L28I, I72V, L101I, T124N, K156N, I208L, E212A, D256E  
10BR_PE063 10BR_PE063 None    S24N, L101I, V165I, V201I, K211T, T218I, L234I, D256E, I268L, D270N, S283G T174I 
10BR_PE065 10BR_PE065 None    E11D, S17T, L45V, K111T, S119T, T125A, V126L, I135V, S230N, N254Q, A265V  
10BR_PE072 10BR_PE072 None    E11D, K14R, S17N, A21S, A23V, L28I, S39C, L101I, T124A, K156R, D167E, K173R, Q216H  
10BR_PE076 10BR_PE076 None    S17N, L101I, S119G, T122I, T124A, T125S, V201I, T206TS, T218I, L234I, D256E  
10BR_PE082 10BR_PE082 None   V151I S24N, V37I, M50I, L74I, I113V, T125A, G134E, D167E, T206S  
10BR_PE089 10BR_PE089 None    E11D, S24N, Y99F, L101I, T124N, I135V, I220L, Y227F  
10BR_PE095 10BR_PE095 None    E11D, K14R, S17T, T124A, T125A, V126L, K211T, D278N  
10BR_PE096 10BR_PE096 None    S24G, S39C, L45IV, I72V, T124A, V201I  
10BR_PE106 10BR_PE106 None    E11D, V32I, V37I, S39M, I113V, T124N, V201I, T206S, S283G  
10BR_PE110 10BR_PE110 None    D6T, K7E, E10D, L28I, I72V, A91S, S119P, T122I, T124A, S230N, D256E  
10BR_RJ004 10BR_RJ004 None    D25E, L28I, I72V, S119P, K188R, K211R, D270H  
10BR_RJ005 10BR_RJ005 None    D6E, E10D, K14R, R20K, V31I, L68S, K71Q, I72V, A98G, L101I, S119R, T124N, K156N, T206S, D256E  
10BR_RJ008 10BR_RJ008 None    S17N, L28I, L45Q, A49P, I72V, L101I, T112A  
10BR_RJ012 10BR_RJ012 None   T97A K14R, I72V, T125A, V126M, K127R, V201I, D256E, S283G  
10BR_RJ014 10BR_RJ014 None    S17T, L63I, I72V, A98G, L101I, K111T, S119P, T122I, T124A, V165I, T218I, L234V  
10BR_RJ016 10BR_RJ016 None    E11D, V32I, S39C, S119P, T122I, V201I, I220IV  
10BR_RJ017 10BR_RJ017 None    D6T, E10D, E13D, S17N, V31I, L45Q, M50I, I72V, T112A, T124N, T125A, A205S, D232E, D256E  
10BR_RJ019 10BR_RJ019 None    V31I, I72V, L101I, S119P, T206S, K211Q, I220L, Y227F, I268L, D270N  
10BR_RJ020 10BR_RJ020 None    I72V, T112A, I113V, T124N, T125A, A205T, I208L, D256E, S283G, D288N  
10BR_RJ029 10BR_RJ029 None    E11D, R20K, I72V, L101V, K111T, S119T, T124A, T125A, V201I, D207N, K211T, T218I, D256E, S283G  
10BR_RJ030 10BR_RJ030 None   E138D E11D, S24N, D25E, L28I, I72V, A91S, L101I, T122I, T124N, V176L, K188R, A265V  
10BR_RJ039 10BR_RJ039 None    M50T, L101I, T112V, T124N, K136Q, V201I, V281M  
10BR_RJ040 10BR_RJ040 None    D6T, K7E, S17N, V31I, L74I, T112I, S119P, T124A, T125A, V201I, T206S, I220L, Q221T, L234I, A265V, R269K, D270H, S283G  
10BR_RJ042 10BR_RJ042 None    D6N, K7E, M50I, I72V, I220M, Y227F, R231RK, N254K, A265V G237GE 
10BR_RJ044 10BR_RJ044 None    K14R, V32I, G70E, L101I, S119T, T124A, T125A, K136Q, L158I, V165I, V201I, T218I, L234I, D256E, S283G D3N 
10BR_RJ052 10BR_RJ052 None    E11D, S24N, V31I, M50I, I72V, A91E, S119R, T124N, T125A, V126L, I135V, V201I, K219N, N222K, S230G, D232E  
10BR_RJ055 10BR_RJ055 None    E11D, S17T, I72V, I84L, L101I, T112I, S119P, T124S, T125A, K136Q, V201I, A205S, K211R, T218I, L234V, D256E, I268L, S283G  
10BR_RJ056 10BR_RJ056 None   V151I I72V, L101I, D167E, V201I, L234S  
10BR_RJ064 10BR_RJ064 None  E138EK G140GEKR, G163GEKR S17N, V31I, S39N, I72V, L101I, S119SG, T124N, G134GS, M154MI, E157EK, R166RK, A169AT, A175T, V180I, R187K, G193K, V201I, K215KN, N222NK, R231RK, V250VI, R262K, D278N, D279N, D286N, D288N A129AT, W131W*, W132W*, G149GEKR, E152EK, D167DN, E170EK, M178I, A179T, G192R, G197E, E212EK, R224RQ, W235W*, G237GR, W243W*, G247GE, D256DN, K266N, E287K 
10BR_RJ065 10BR_RJ065 None   V151I E10D, S17N, I72V, L101I, T124A, T125A, D167E, V201I, A265V, S283G, D286E, E287EA  
10BR_RJ067 10BR_RJ067 None  E138K G163GR S17G, M22L, S39C, L45V, M50I, E96D, L101I, T124N, T125A, M154MI, K156N, E157EK, V165I, I182V, V201I, S230N, R231K, N254K, R284G, D286N G149GR 
10BR_RJ068 10BR_RJ068 None   V151I V31I, T124A, T125A, I182V, V201I  
10BR_RJ078 10BR_RJ078 None   V151I E10D, M50I, I72V, G163Q, S230N  
10BR_RJ083 10BR_RJ083 None   E138D S17N, V31I, M50I, L74I, S119P, T122I, T124A, T125A, K160R, T218S, I220M, Y227F, D256E, S283G  
10BR_RJ085 10BR_RJ085 None    D6E, S17N, I72V, L101I, S119P, K173R, F181L, V201I, A265V, R269K  
10BR_RJ086 10BR_RJ086 None   V151I E11D, P30A, T125A, V126L, V201I, T206S  
10BR_RJ088 10BR_RJ088 None    S17N, R20K, L28I, S39C, I72V, T124A, V201I, I220L  
10BR_RJ090 10BR_RJ090 None    M22L, L28M, E35Q, K103R, T124N, T125A, V126M, I135V, I182V, V201I, L234I, A265V, R269K  
10BR_RJ091 10BR_RJ091 None    G70E, L101I, S119R, V201VI, I208L, T218TI, S283G  
10BR_RJ093 10BR_RJ093 None    S17N, I84L, L101I, I113V, S119T, T124A, T125A, K136Q, G189R, V201I, A205S, K211R, T218I, L234V, D256E, S283G  
10BR_RJ097 10BR_RJ097 None    D6E, E10D, V31I, K71Q, A98G, L101I, S119R, T122I, T124N, K156N, T206S, D256E, S283G  
10BR_RJ099 10BR_RJ099 None    D6E, E10D, S17T, Q95R, L101I, T112V, S119P, T122I, T124N  
10BR_RJ101 10BR_RJ101 None    Q95S, T124N, K156N, I200M, I208L, K211R, S283G  
10BR_RJ106 10BR_RJ106 None    E11D, A23V, D25E, V31I, D41N, I72V, S119G, T122I, T125A, D167E, V201I, I203M, K215N, N222K, S230N, A265V, R269K  
10BR_RJ110 10BR_RJ110 None    D6DN, E96D, L101I, T124N, K156N, V201I, K211R, E212S, D256E, S283G E170EK 
10BR_RJ111 10BR_RJ111 None   E138D E11D, L28I, V37I, S39C, I60M, A91T, L101I, K111T, S230N, D253E, S283G  
10BR_SP002 10BR_SP002 None    S17N, R20K, L45Q, I72V, S119G, T122I, T125A, I135V, V201I, T206S, Q216H, N222K, L234H  
10BR_SP012 10BR_SP012 None    S17N, L101I, G163E, I208L, K211R, S230N  
10BR_SP015 10BR_SP015 None    S17N, V32I, D41N, I72V, L101I, K136Q, V201I, Y227YF, D256E  
10BR_SP016 10BR_SP016 None    E11D, R20K, L28I, M50I, I60V, L101I, S119P, T206S, D207N, I208L, K211T, Q221S, S283G  
10BR_SP026 10BR_SP026 None    S17N, S39N, I72V, L101I, T112A, T124A, K136R, V165I, K188R, V201I, I220L, L234V, D256E, I268L, D270H  
10BR_SP027 10BR_SP027 None    E11D, R20K, V31I, L101I, I113V, S119P, T124N, T125A, L234I, A265V, R269K, D286N K136D 
10BR_SP029 10BR_SP029 None    S17N, I72V, L101I, S119T, T124A, T125A, I135V, K136Q, G163H, F181L, V201I, A205S, T206S, L234V, D256E, I268L, D270H, S283G  
10BR_SP031 10BR_SP031 None    D6E, E10D, E11D, V31I, M50T, L101I, T112V, T122I, T124N, K136N, V201I, L234I, I251L, A265V, R269K, D278A, V281M, S283G  
10BR_SP033 10BR_SP033 None    S17N, A23V, S24D, D25E, V31I, M50I, L101I, T112V, T124N, K136Q, V201I, T206S, L234I, I251L, A265V, R269K, D278A, D288N  
10BR_SP037 10BR_SP037 None    D6E, S17N, T93S, L101I, S119P, T122I, T124N, K156N, V165I, V201I, I203IM, I208L, L234V, D256E, I268L, S283G  
10BR_SP039 10BR_SP039 None    I72V, T124S, T218I, D256DE  
10BR_SP044 10BR_SP044 None    D6S, K7E, V31I, L45V, I72V, V165I, V201VI  
10BR_SP052 10BR_SP052 None   V151I K14R, V31I, I113V, T124S, T125A, V201I, S230N, R284G  
10BR_SP063 10BR_SP063 None    S17N, I84L, L101I, K111R, S119T, T124A, T125A, K136Q, V201I, K211R, Q214E, T218I, L234V, D256E, S283G  
10BR_SP065 10BR_SP065 None    E10D, I72V, T112A, T124N, T125A, V126M, V201I, A205S, I220F, D256E  
10BR_SP067 10BR_SP067 None    D6T, K7Q, E10D, E11D, E13D, R20K, V31I, I60M, L101I, S119G, T122I, T124N, G193E, V201I, T218S, Y227F, S255N, D256E, S283G  
10BR_SP068 10BR_SP068 None    E10D, V31I, M50T, I84L, L101I, S119T, T124A, K136Q, V201I, L234V, D256E, S283G  
10BR_SP074 10BR_SP074 None    S39C, L101I, S119P, T124N, T125A, V180I, V201I, K219N, N222K, S230N, I268L