Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Cheriro (2015)
Title High prevalence of HIV low abundance drug-resistant variants in a treatment-naive population in north rift Kenya.
Citation ARHR
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 55
NumPts 55
Subtype A, D, B, CRF35_AD, C, CRF01_AE, CRF04_cpx, CRF05_DF, A + D


Clinical PR Isolates

NLHG-100 NLHG-100 None    K14R, K20KR, E35D, M36I, N37D, R41K, R57K, I62V, L63S, H69K, L89M  
NLHG-101 NLHG-101 None    I13V, I15V, E35D, M36I, N37D, R41K, R57K, D60E, L63P, H69K, L89M  
NLHG-103 NLHG-103 None    L19I, E35D, M36I, N37D, R41K, R57K, L63LI, H69K, V77I, L89M E21E*KQ 
NLHG-104 NLHG-104 None    E35D, M36MI, N37NDIV, L38X, R41K, K45R, R57K, L63P, H69K, K70R, L89M  
NLHG-105 NLHG-105 None    T12S, I15IV, L19I, M36I, N37K, R41N, L63T, H69K, L89M, I93L  
NLHG-107 NLHG-107 None    I13V, I15IV, E35D, M36I, R41K, R57K, H69K, L89M  
NLHG-108 NLHG-108 None    I13V, K14KR, R41K, L63P, I64V, E65ED, V77I  
NLHG-110 NLHG-110 None    L10IV, I13V, K14KR, G17GE, M36IL, R41RK, L63LP, I64IV, H69HY, I72IV  
NLHG-111 NLHG-111 None    L10LI, I13V, E35D, M36I, N37D, R57K, L63S, H69Q, L89M  
NLHG-112 NLHG-112 None    L10LI, I13V, G16E, L19I, K20R, E35D, M36I, R41K, R57K, I62V, L63LP, E65D, H69K, L89M  
NLHG-113 NLHG-113 None    I13V, E35D, M36I, N37D, R57K, H69K, L89M  
NLHG-114 NLHG-114 None    L10I, I13V, E35D, M36I, R41K, R57K, L63AT, H69K, L89M  
NLHG-115 NLHG-115 None    I13V, K14KN, E35D, M36I, N37D, R41K, L63M, H69K, L89M, N98NK E21E*KQ 
NLHG-116 NLHG-116 None    Q7QR, T12TS, I13IV, I15IV, G17GR, L19LI, M36I, R41K, K45KR, H69Q, L89LM, I93L  
NLHG-117 NLHG-117 None    K14KR, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
NLHG-118 NLHG-118 None    I13V, M36I, R41K, Q61N  
NLHG-119 NLHG-119 None    I13V, K20R, M36I, P39PS, R41K, I62V, I64M, L89M  
NLHG-121 NLHG-121 None    L10I, I13V, L19LI, E35D, R41K, I64V, H69Y  
NLHG-122 NLHG-122 None   L10LF I13V, K20KR, L33V, R41K, L63LP N88NI 
NLHG-126 NLHG-126 None    M36I, R41K, H69K, L89M  
NLHG-127 NLHG-127 None  M46MLV  E35D, M36I, R41K, L63S, H69K, L89M, T91V, I93L, N98NK  
NLHG-128 NLHG-128 None    I13V, G17GR, R41K, L63P, I64L, H69HQ  
NLHG-129 NLHG-129 None    I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M  
NLHG-133 NLHG-133 None    I13V, K14KR, L19LI, E35D, M36I, N37D, R41K, H69K, L89M  
NLHG-135 NLHG-135 None    I13V, G16A, K20I, E35ED, M36I, R41K, H69K, I72IM, L89M  
NLHG-149 NLHG-149 None    E35D, M36I, R41K, R57K, H69K, L89M  
NLHG-150 NLHG-150 None   V11I L19LI, R41K, L63LP, I64IV, I72IV  
NLHG-157 NLHG-157 None    L10LI, T12TAIV, I13V, K14KR, K20KR, E35ED, M36I, N37EQ, R41K, R57RK, D60DE, I62IV, L63LIPT, I64IV, E65ED, H69HKNQ, K70KR, I72IV, T74TA, V75VI, L89LM  
NLHG-159 NLHG-159 None    I13V, I15V, K20R, E35D, M36I, N37D, R41K, K45R, H69K, L89M, N98NK  
NLHG-162 NLHG-162 None    T12V, I13V, K20R, E35D, M36I, N37D, R41K, R57K, D60E, I62V, H69K, I72V, L89M  
NLHG-164 NLHG-164 None    I13V, K20R, E35D, M36I, R41K, R57K, H69K, L89M K45K*R 
NLHG-170 NLHG-170 None    L10I, T12V, I13V, E35D, N37S, L38*, R41K, L63LV, H69K, L89M  
NLHG-172 NLHG-172 None    I13V, L19V, E35D, M36I, N37D, R41K, R57RK, L63RS, H69K, L89M  
NLHG-173 NLHG-173 None    I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M  
NLHG-175 NLHG-175 None    T12S, G16GE, L19I, M36I, R41K, L63T, H69K, L89M, I93L  
NLHG-72 NLHG-72 None    I13V, K20KR, M36I, R41K, H69K, L89I  
NLHG-77 NLHG-77 None    I13V, K14R, G16GE, K20KR, E35D, N37S, R41K, R57K, D60E, I62V, H69K, L89M  
NLHG-78 NLHG-78 None    I13V, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
NLHG-79 NLHG-79 None    I15ILV, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
NLHG-80 NLHG-80 None    E35D, M36I, N37D, R41K  
NLHG-82 NLHG-82 None    L10I, I13V, I15V, G16E, E35D, M36I, N37G, R57K, L63S, H69K, I72T, L89M  
NLHG-83 NLHG-83 None    L10I, K14R, I15V, L19I, K20R, E35D, M36I, R41K, K45R, R57K, H69Q, L89M  
NLHG-84 NLHG-84 None    L10V, I13V, G16E, K20R, M36I, R41K, H69K, I72V, L89M  
NLHG-85 NLHG-85 None    I13V, G16E, E35D, M36I, N37D, R41K, I62V, L63V, H69K, A71T, T91V, I93L  
NLHG-86 NLHG-86 None    I13V, E21X, E35D, M36I, N37NIST, R41RIKT, D60E, H69KN, L89M R57RIKT, R87RS 
NLHG-88 NLHG-88 None    L10V, K20R, E35D, M36MI, N37X, R41K, R57K, H69Q, L89M L38L* 
NLHG-89 NLHG-89 None    I13V, K14R, G17GE, K20R, E35D, M36I, N37D, R41RK, R57K, D60E, I62V, H69K, V77I, L89M  
NLHG-90 NLHG-90 None    I13V, R41K, D60E, L63P, I72E, V77I  
NLHG-91 NLHG-91 None    I13IV, G17GE, M36I, R41K, I64V, N98NK  
NLHG-92 NLHG-92 None    L10I, M36I, I62V, L63T, I64L, I93L  
NLHG-94 NLHG-94 None    E35D, N37S, R41K, R57K, D60E, H69K, L89M  
NLHG-95 NLHG-95 None    L10V, I13V, I15IV, G16E, E35D, M36I, P39PT, R41K, H69K, L89M  
NLHG-96 NLHG-96 None    I13V, E35D, M36I, R41K, R57K, H69K, L89M  
NLHG-97 NLHG-97 None    I13V, L19F, E35D, M36I, R41K, I62V, I64ILV, H69K, L89M  
NLHG-99 NLHG-99 None    I13V, E35D, N37S, R41K, R57K, L63M, H69K, L89M