Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Van Tran (2016)
Title A strong association of human leukocyte antigen-associated Pol and Gag mutations with clinical parameters in HIV-1 subtype A/E infection.
Citation AIDS
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 359
NumPts 359
Subtype CRF01_AE, A

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 359 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
VI-004 VI-004 None    E11D, A21T, V31I, S39N, D41N, M50I, I72V, T112V, T124A, T125A, G134D, I135V, K136Q, V165I, D167E, V201I, I217V, L234I, K236R, S283G  
VI-006 VI-006 None    K14R, A21T, V31I, S39N, I72V, T112V, T125A, K127R, G134N, I135V, K136R, D167E, V201I, I203M, L234I, S283G  
VI-012 VI-012 None    K14R, A21T, V31I, S39N, I72V, T112V, S119G, T124N, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-022 VI-022 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-023 VI-023 None    K14R, A21T, V31I, S39N, I72V, Q95QH, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-025 VI-025 None    K14R, A21T, V31I, S39N, I72V, T112V, T125A, V126L, K127R, G134N, I135V, K136R, D167E, V201I, I208M, L234I, S283D, D286N  
VI-028 VI-028 None    K14R, A21T, V31I, V32I, Q53*, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, L158X, D167E, V201I, L234I, S283G  
VI-038 VI-038 None    K14R, A21T, V31I, S39N, I72V, T112V, I113V, T124A, T125A, G134N, K136R, D167E, V201I, L234I, S283G  
VI-046 VI-046 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126M, K127R, G134N, I135V, K136R, K160R, V201I, L234I, S283G  
VI-050 VI-050 None    E11D, A21T, V31I, V32I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, I217V, L234I, S283G  
VI-054 VI-054 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, K160R, D167E, V201I, L234I, S283D  
VI-062 VI-062 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, S255K, S283G  
VI-073 VI-073 None    K14R, A21T, A23V, V31I, S39SN, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G, D288N  
VI-075 VI-075 None    K14R, A21T, V31I, S39N, I72V, T112V, T125A, K127R, G134N, I135V, K136R, D167E, V201I, I208M, K215KR, L234I, S283G  
VI-079 VI-079 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-080 VI-080 None    E11ED, K14R, A21T, A23V, V31I, S39SN, E48EG, M50MI, I72V, Q95QP, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-082 VI-082 None    E11D, E13D, A21T, V31I, V32I, I72V, Q95H, K111R, T112V, T124A, T125A, G134N, K136Q, V165I, D167E, V201I, L234I, S283G  
VI-087 VI-087 None   E138ED K14R, A21T, V31I, S39N, I72V, T112V, S119G, T124N, T125A, G134N, I135IV, K136QR, D167E, V201I, R231RK, L234I, S255SN, S283G  
VI-090 VI-090 None    K14R, A21T, A23V, V31I, S39N, I72V, T112V, T125A, V126M, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-093 VI-093 None    K14R, A21T, S39N, I72V, L101LIM, T112V, T124A, T125AV, G134N, I135V, K136R, V165I, D167E, V201I, L234I, D253H, S283G, R284G  
VI-094 VI-094 None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, V201I, T206S, D207E, I208L, L234I, I251V, S283G  
VI-100 VI-100 None    K14R, A21T, V31I, S39N, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-101 VI-101 None    K14R, A21T, V31I, S39N, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136R, D167E, H171Y, V201I, L234I, V281VA, S283G I220IN 
VI-110 VI-110 None   T97A K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126F, G134N, I135V, K136R, Q137L, V165I, D167E, V201I, L234I, S283G  
VI-113 VI-113 None    K14R, A21T, A23V, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-115 VI-115 None    K14KR, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, E157ED, K160KQR, D167E, V201I, T206S, L234I, D279DG, S283G, R284G  
VI-117 VI-117 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126M, K127R, G134N, I135V, K136H, G163E, D167E, V201I, L234I, D279G  
VI-118 VI-118 None    K14R, V31I, S39N, M50I, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, T206S, L234I, S283G  
VI-122 VI-122 None    K14R, A21T, M22MR, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, I141IV, V165I, D167E, V201I, L234I, S283G  
VI-124 VI-124 None    K14R, A21T, V31I, S39N, L45Q, I72V, T112V, T124N, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-125 VI-125 None    E11D, K14R, A21T, V31I, S39N, I72V, L101I, T112V, T125A, K127R, G134N, I135V, K136Q, D167E, V201I, I217V, L234I, S283G  
VI-126 VI-126 None    K14R, R20RK, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, G193D, S195C, V201I, L234I, S283G  
VI-129 VI-129 None    K14R, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, M154I, D167E, R187K, V201I, K211T, L234I, S283G  
VI-134 VI-134 None    K14R, V31I, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, K211R, L234I, S283G  
VI-139 VI-139 None    K14R, V31I, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, K211R, L234I, S283G  
VI-144 VI-144 None    E11D, K14R, A21T, V31I, S39N, K71R, I72V, F100S, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-145 VI-145 None    K14KR, V31VI, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, S230SN, L234I, S283G, R284G  
VI-160 VI-160 None    E11D, A21T, V31I, S39SN, T112V, T125A, V126M, G134N, I135V, K136R, D167E, V201I, L234I, S283D  
VI-166 VI-166 None    K14R, V31I, T112V, T124A, T125A, G134N, I135V, K136R, V201I, I208IM, I220L, Y227F, L234I, S255SN, S283G  
VI-175 VI-175 None    K14R, A21T, V31I, S39N, I72V, T112V, T124AG, T125A, K127KR, G134N, I135V, K136R, D167E, V201I, L234I, S283G, R284G  
VI-179 VI-179 None    K14R, A21T, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I  
VI-181 VI-181 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-193 VI-193 None    K14R, R20K, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-194 VI-194 None   V151VI K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, R284G E48EK 
VI-196 VI-196 None    K14R, A21T, A23V, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-199 VI-199 None    K14R, V31I, I72V, T112V, I113V, T124AS, T125A, I135V, K136T, V165I, V201I, L234I, S283SG  
VI-202 VI-202 None   L74IM A21S, V31I, V32I, V37I, S39N, M50L, L63LV, T112V, T125A, G134N, I135V, K136KQ, E157Q, K160Q, D167DE, V201I, K211R, L234I, S283G E11E*, E13V, K14L, H16V, S17DY, N18Y, R20T 
VI-206 VI-206 None    K14R, A21T, V31I, I72IV, K111R, T112V, T124A, T125A, G134N, I135V, D167E, V201I, K211R, L234I, S283G, R284G  
VI-210 VI-210 None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, V201I, T206S, D207E, I208L, L234I, I251V, S283G  
VI-217 VI-217 None    E11D, E13D, K14R, A21T, A23V, V31I, G70GE, I72V, T112V, T124A, T125A, V126VL, G134N, I135V, K136R, M154MI, D167E, V201I, L234I, S283G  
VI-219 VI-219 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126L, K127KR, G134N, I135V, K136R, V165I, D167E, V201I, L234I, S283G  
VI-223 VI-223 None    K14R, A21T, S39N, I72V, L101I, K111R, T112V, T124A, T125A, G134N, I135V, K136Q, G163E, D167E, R187K, V201I, L234I, D279G, S283G  
VI-225 VI-225 None    K14R, A21T, A23AV, D25DE, V31I, S39N, T112V, T124A, T125A, G134N, I135V, K136R, G163GE, V165VI, V201I, L234I, D256DE, S283G  
VI-228 VI-228 None    V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-231 VI-231 None    E11D, K14R, A21T, V31VI, M50I, I72V, T112V, T124N, T125A, G134N, I135V, K136R, Q164K, D167E, V201I, T218S, L234I, S283G, R284RG R187N 
VI-238 VI-238 None    K14R, A21T, V31I, S39N, I72IV, V88VI, T112V, T124A, T125A, G134N, I135V, D167E, V201I, K215KN, Q216H, L234I, S283G  
VI-239 VI-239 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, K211R, L234I, A265V, S283G, R284G  
VI-242 VI-242 None    K14R, A21T, S39N, T112V, T124A, T125A, G134N, I135V, D167E, V201I, L234I, S283G  
VI-243 VI-243 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, I141V, D167E, V201I, L234I, S283D G59R 
VI-244 VI-244 None    E11D, K14R, A21T, V31VI, V32VI, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-245 VI-245 None    K14R, A21T, V31I, Q95H, K103KR, T112V, T124A, T125A, G134N, I135V, K136R, M154I, D167DE, V201I, L234I, S283G  
VI-247 VI-247 None    V31I, S39N, I72V, G106GA, T112V, T124TA, T125A, V126L, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-248 VI-248 None    K14R, A21T, S39N, L45LI, I72V, T112V, T124A, T125A, G134N, I135V, K136KQ, D167DE, A169AT, V176VL, V201I, A205AT, Q214QH, Q216QH, I217IV, L234I, S283G V165VE, A179AE, K186KI, R187RI, Y194YN, G197GW, D202DN, D207DY, Q209QR, K211KI, K215KI, K240KE 
VI-251 VI-251 None    K14R, V31I, I72V, L101I, T112V, T124G, T125A, G134N, I135V, K136Q, I161IV, D167E, V201I, L234I, S283G  
VI-254 VI-254 None   T97A K14R, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, K173R, S195T, V201I, I203M, L234I, S283G  
VI-258 VI-258 None    K14R, A21T, V31I, S39N, I72V, E96D, T112V, T124A, T125A, G134N, I135V, K160R, D167E, V201I, L234I, S283G  
VI-260 VI-260 None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-262 VI-262 None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, K127R, G134N, I135V, K136R, D167E, L234I, S283G  
VI-264 VI-264 None    K14R, A21T, V31I, V32I, S39SN, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, G193GE, V201I, K211R, L234I, S283G  
VI-265 VI-265 None    K14R, A21T, A23V, V31I, S39N, I72V, T112V, T124A, T125A, K127R, G134N, I135V, K136R, D167E, V201I, L234I, A239X, S283G, R284G K236KI 
VI-271 VI-271 None    K14R, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I  
VI-274 VI-274 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-275 VI-275 None    E11D, K14R, A23V, S24N, V31I, S39N, I72V, L101I, T112V, T124A, T125A, K127R, G134N, I135V, K136R, V165I, D167E, V201I, L234I, S283G  
VI-283 VI-283 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-285 VI-285 None    K14R, S39N, I72V, I84IM, T112V, T124A, T125A, V126M, G134N, I135V, K136R, D167E, V201I, R231K, L234I, S283G G149GR 
VI-288 VI-288 None    A21T, V31I, S39N, M50MV, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-292 VI-292 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, E157Q, K160T, D167E, V201I, I203M, I208L, L234I, S283G  
VI-296 VI-296 None    S17N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-300 VI-300 None    E11D, K14R, A21T, V31I, T112V, T124A, T125A, G134N, I135V, K136R, G163E, V201I, L234I, S283G  
VI-309 VI-309 None    K14R, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-314 VI-314 None    D3E, K14R, A21T, S39T, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-316 VI-316 None    E11D, K14R, A21T, A23V, V31I, S39N, I72IV, T112V, T124A, T125A, G134N, I135V, K136QR, V201I, L234I, D278N, S283G S153SP 
VI-327 VI-327 None   L74M K14R, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, V201I, L234I, S283G  
VI-329 VI-329 None    K14R, A21T, A23V, V31I, S39N, L63V, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, G193E, V201I, L234I, Q274K, S283G  
VI-333 VI-333 None    K14R, A21T, V31I, S39SN, L45Q, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, V201I, L234I, S283G R284RS 
VI-338 VI-338 None    K14R, A21T, V31I, S39N, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-345 VI-345 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136QR, V165I, D167E, V201I, L234I, S283G  
VI-351 VI-351 None    K14R, A21T, A49AP, I72V, T112V, T124A, T125A, I135V, K136H, D167E, V201I, L234I, S283G  
VI-359 VI-359 None    E11D, K14R, A21T, V31I, S39N, M50I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-366 VI-366 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, I141V, D167E, V201I, L234I, S283D  
VI-375 VI-375 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, K127KR, G134N, I135V, K136KQR, V165I, V201I, L234I, S283G  
VI-377 VI-377 None    K14R, A21T, V31I, S39N, I72V, T112V, T124H, T125A, G134N, I135V, D167E, V201I, L234I, S283G  
VI-378 VI-378 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-392 VI-392 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283D  
VI-396 VI-396 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, K136Q, K160Q, Q164K, D167E, V201I, L234I, S283G  
VI-405 VI-405 None    K14R, V31I, I72V, T112V, T124A, T125A, G134GD, I135V, K136QR, E157Q, K160Q, D167E, V176L, V201I, K211R, L234I, S283G  
VI-407 VI-407 None    S17N, L28LIM, S39SN, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, S283G  
VI-408 VI-408 None    K14R, A21T, V31I, S39N, I72V, T112V, T124X, T125A, V126VL, K127R, G134N, I135V, K136KQR, D167E, V201I, I217V, T218S, L234I, S283G  
VI-417 VI-417 None    E11D, K14R, A21T, V31I, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, S283G  
VI-419 VI-419 None   Y143YF K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, A128AV, A129AV, V165I, D167E, V201I, K211R, I217IV, L234I, S283G C130C*, W132R, G134IL, I135GV, Q137P, I141IS, N144R