Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Kaleebu (2015)
Title Virological response and antiretroviral drug resistance emerging during antiretroviral therapy at three treatment centers in Uganda.
Citation PLoS ONE
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 35
NumPts 35
Subtype A, D, C, B


Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
MBL-0017 UGA-MBL-0017-2012 TDF, 3TC NVP K65R, M184V V106A, Y181C, F227FL I5V, V35T, K122E, D123S, I135T, K173A, Q174K, D177E, V179I, T200A, I202V, Q207A, R211S, V245Q, E248D, A272P, T286A, E291D, I293V, P294T, E312D  
MBL-0030 UGA-MBL-0030-2012 TDF, 3TC NVP  V179E, Y188YFHL V35T, T39E, K43KR, K49KR, K122E, D123N, I142V, A158S, K173T, Q174K, D177E, I178M, T200A, I202V, Q207E, P243T, V245Q, D250E, A272P, K277R, T286A, E291D, V292I, I293V, V317T  
MBL-0031 UGA-MBL-0031-2012 TDF, 3TC NVP  A98AG P4S, K20R, V21I, V35VI, T107TA, K122E, D123S, K166KR, K173S, Q174K, D177E, T200A, I202V, Q207A, R211K, V245Q, E248D, Q278H, T286A, E291D, I293IV, P294T, L295M, E312D  
MBL-0043 UGA-MBL-0043-2012 TDF, 3TC EFV A62V, K65R, M184V V106M, V179E, F227FL V35I, E36A, T39E, S68N, K122E, D123G, I135M, K173T, Q174K, D177N, G196E, T200A, Q207E, R211K, V245Q, E248D, D250T, A272P, L283I, T286A, E291D, V292I, I293V  
MBL-0052 UGA-MBL-0052-2012 TDF, 3TC EFV M184MV  K11T, V35T, V60I, T107TS, D121H, K122E, D123S, E169EK, K173A, Q174K, D177E, V179I, T200A, Q207A, V245Q, E248DN, L295M  
MBL-0053 UGA-MBL-0053-2012 TDF, 3TC EFV  K103N, Y188YH K11T, V21I, V35I, K64R, T107TS, D123S, S162C, K173L, Q174K, D177E, V179I, G196E, I202V, Q207A, R211S, V245Q, E248D, T286A, E291D, V292I, I293V, E312N  
MSK-0005 UGA-MSK-0005-2012 TDF, FTC NVP A62AV, K65R, M184MIV K101KAET, K103KN, Y181C K11T, V21VI, V35T, K49R, I50V, V60I, V90VI, K102KR, V111VI, K122E, D123N, S162D, T165L, K173S, Q174K, D177E, V179VI, T200A, I202V, Q207A, R211K, V245Q, E248D, K275Q, T286A, E291D, V292I, I293V, P294T, E312T  
MSK-0015 UGA-MSK-0015-2012 TDF, FTC NVP A62V, K65R, M184I A98G, Y181C, M230L E6K, K11Q, V35I, K122E, D177E, I178M, T200A, Q207E, R211K, V245Q, D250E, A272P, K277R, Q278H, L282C, L283I, I293V, P294A  
MSK-0017 UGA-MSK-0017-2012 TDF, FTC NVP K70E, Y115YF, M184IV V108I, Y181C K20R, V35T, V60I, V90I, K122E, D123S, I135T, S162A, K173Q, Q174K, D177E, I178L, Q207A, R211S, F214L, H221Y, V245Q, E248N, D250E, S268C, A272P, V276T, T286A, E291D, V292I, E297K, E312D  
MSK-0024 UGA-MSK-0024-2012 TDF, 3TC NVP   P9PS, K20R, V35T, E40D, K49R, I50V, V60I, K122E, D123E, K166R, D177E, I178IM, T200TA, Q207E, R211K, V245I, D250E, K277R, L282C, L283I, T286V, A288T, I293V  
MSK-0038 UGA-MSK-0038-2012 TDF, FTC NVP K70E, M184V A98G, V108I, Y181C, G190A K11T, K20R, V21I, V35T, T39R, E40K, K43E, V60I, K101X, K122E, D123N, K173S, Q174K, D177E, I178L, V179I, T200A, I202V, Q207A, H221Y, L228R, V245Q, E248D, D250E, T286A, E291D, I293V, K311KR, E312D  
MSK-0055 UGA-MSK-0055-2012 TDF, FTC NVP M41L, K65R, M184V Y181C, G190A E6S, V35T, E44D, K49R, V60I, V111I, K122E, D123S, I135T, I142V, F171Y, K173S, Q174K, D177E, T200A, Q207A, R211S, D250E, A272P, T286A, E291D, V292I, I293V, P294T, E312D  
MSK-0061 UGA-MSK-0061-2012 TDF, FTC NVP K65R, Y115F, M184V Y181C V35T, E40D, K49R, V60I, K122E, D123S, D177E, I178L, V179I, Q207E, R211K, V245K, D250E, A272S, L282C, L283I, V292I, I293V, E312D  
MSK-0074 UGA-MSK-0074-2012 TDF, FTC NVP K65R, D67N, M184V, K219E K103N, Y181C V35T, E40ED, V60I, K122E, D123S, I135IL, K173A, Q174K, D177E, I178M, V179I, I202V, Q207A, R211S, V245E, D250E, K275Q, T286A, E291D, V292I, I293V, P294T, E312N  
MSK-0075 UGA-MSK-0075-2012 TDF, 3TC NVP K65R, M184I K101KE, Y181C, G190GA, M230L V35T, K49KR, V60I, V90I, K122E, D123N, I135T, T139S, K173A, Q174K, D177E, I178IV, Q207AD, R211RS, V245K, D250E, A272P, K277R, L282C, T286A, K311KR  
MSK-0089 UGA-MSK-0089-2012 TDF, 3TC NVP K70EQ, M184MIV A98AG, K101E, Y181C, G190A V35T, K43KR, V60I, V90I, D121H, K122E, I135T, I142V, Q174QK, D177E, I178L, T200L, E203EK, Q207E, R211K, L228LR, V245K, D250E, A272P, L282C, T286V, I293V, E297A  
MSK-0095 UGA-MSK-0095-2012 TDF, 3TC NVP K65R, Y115F L100I, Y188C V35T, T39K, K49R, V60I, V90VI, K122E, I135L, E169D, D177E, G196E, T200R, Q207E, L228R, V245Q, D250E, A272P, K277R, L282C, L283I, K287R, I293V, E297K, A304E  
MSK-0096 UGA-MSK-0096-2012 TDF, FTC EFV K70EQ, M184I Y181C V35T, T39R, K122E, D177E, I178M, E203K, Q207E, R211K, H221Y, V245M, D250E, A272P, K277KR, T286A  
MSK-0122 UGA-MSK-0122-2012 TDF, FTC NVP K70E, M184V V179D, Y181C I31L, V35L, T39E, V60I, T69N, K103R, D123E, I142V, R172K, D177E, T200A, Q207E, R211K, P243H, V245E, D250DE, A272P, V276I, Q278H, K281R, L282C, L283I, K287R, I293V  
MSK-0123 UGA-MSK-0123-2012 TDF, 3TC NVP K70Q, M184I A98G, Y181C, Y318F V35T, T39L, I47L, K49R, V60I, V90VI, K122E, D123E, I135T, T200TA, Q207E, R211K, V245Q, A272S, L282C, T286TA, I293V  
MSK-0125 UGA-MSK-0125-2012 TDF, FTC NVP T215S  I5V, V35T, E40D, V60I, V118I, K122E, I135T, K173A, Q174K, D177E, T200S, Q207A, R211S, F214L, V245I, D250E, T286A, I293V, P294A, E312D  
MSK-0126 UGA-MSK-0126-2012 TDF, 3TC EFV   V35T, E40D, V60I, K122E, D123N, I135IT, K173S, Q174K, Q207K, R211M, F214L, V245Q, E248D, T286A, E291D, I293V, V317A  
MSK-0135 UGA-MSK-0135-2012 TDF, 3TC NVP K65R Y181C, G190A I5V, V35T, K49R, V60I, D121Y, K122E, T139V, E169D, D177E, T200L, Q207E, R211K, V245K, D250E, A272P, K277R, K281R, L282C, L283I, I293V K46KM 
NSA-0002 UGA-NSA-0002-2012 TDF, FTC NVP K65R, Y115F, M184V Y181C, G190A V35T, T39K, K43E, K49R, V60I, S68SG, K101KQ, D121Y, K122E, E138G, E169D, D177E, I178M, T200K, Q207E, R211K, V245EQ, D250E, A272P, K277R, L282C, L283I, I293V, K311R  
NSA-0003 UGA-NSA-0003-2012 TDF, FTC NVP K65R, M184V K103N, Y181C K20R, V35T, T39A, S68G, K122E, D123NS, I135T, I142V, K173S, Q174K, D177E, T200A, I202IV, Q207A, R211RS, S251H, A272P, K275R, T286A, E291D, V292I, I293V, P294T, E312D E248ELQV 
NSA-0015 UGA-NSA-0015-2012 TDF, FTC NVP M184V, T215Y A98AGSW, K101E, Y181C, G190A K20KR, E28KR, V35T, T39L, K122E, D123NS, I135T, T165TI, K173S, Q174K, V179I, T200A, Q207A, R211S, V245K, K281R, T286A, E291D, I293V, P294T, V314M  
NSA-0016 UGA-NSA-0016-2012 TDF, 3TC NVP  V106VA K20KR, V35T, K49R, V60I, K122E, D123N, I135T, Q145C, K173L, Q174K, D177E, Q207A, R211S, V245N, D250E, A272P, K277R, L282C, T286A, I293V E300N 
NSA-0029 UGA-NSA-0029-2012 TDF, FTC EFV D67DN, K70KE, M184MIV, K219KE G190E V35M, V90VI, K102R, D123E, I135V, I142V, D177E, V179VI, E203EK, Q207E, R211K, L228LR, V245E, D250E, A272P, K275Q, K277R, L282C, L283I, I293V, E297K, K311R  
NSA-0042 UGA-NSA-0042-2012 TDF, FTC EFV   V8I, V35T, S48T, V60I, K122E, D123E, A158S, K166R, K173A, D177E, Q207E, R211K, V245Q, A272P, K277R, I293V, P294T, E297K, A304E K275KE 
NSA-0076 UGA-NSA-0076-2012 TDF, FTC NVP K65R, K70T, M184V V108I, Y181C I5V, V35T, E44D, V60I, S68G, D121Y, K122E, I135T, T139R, S162Y, I178M, V179I, Q207E, R211K, V245Q, D250E, A272P, K281R, L282C, R284K, T286A, E291A, I293V  
NSA-0079 UGA-NSA-0079-2012 TDF, FTC NVP M41ML, A62AV, K65R, M184V K101KE, Y181C, G190A K11T, K20R, V21I, V35T, E44D, V60I, S68SG, K122E, D123N, I135T, K166R, K173S, D177E, V179I, I202V, Q207A, R211S, V245Q, D250E, A272P, K277R, T286TA, E291D, V292I, I293V, E312D  
NSA-0085 UGA-NSA-0085-2012 TDF, FTC NVP K65R, M184I Y181C, M230ML E28K, K32E, V35T, T39K, K122E, D123N, S162C, K173S, T200A, Q207A, R211S, V245Q, E248D, A272S, K277S, L282C, L283I, A288T, I293V  
NSA-0111 UGA-NSA-0111-2012 TDF, 3TC NVP A62V, K65R, M184V, K219KE Y181CFGV E6A, K11Q, V35T, T39M, V60I, S68G, K101R, K122E, D123N, I135T, T139TI, K173A, Q174K, D177E, V179I, T200A, Q207A, R211K, V245Q, D250E, K275Q, R284RK, I293V, P294T, E312N  
NSA-0112 UGA-NSA-0112-2012 TDF, 3TC EFV K65R, T69~, L74LV, Y115F, M184MI Y181C, G190AT K20R, V35T, V60I, D86DE, K101T, V118I, D121H, K122E, R125K, I142V, T165I, T200I, Q207E, R211K, F214L, V245Q, D250E, A272P, L282C, T286A, E291A, I293V, E297K  
NSA-0120 UGA-NSA-0120-2012 TDF, FTC NVP   I5IV, E6EK, K11T, K20R, V21I, V35T, E40ED, K49KR, K122E, D123N, K173A, Q174K, V179I, T200A, I202V, Q207A, R211S, V245Q, E248D, T286A, E291D, V292I, I293V, P294T, K311R, E312D