Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Meixenberger (2014)
Title Assessment of ambiguous base calls in HIV-1 pol population sequences as a biomarker for identification of recent infections in HIV-1 incidence studies.
Citation J Clin Microbiol
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 2203
NumPts 2203
Subtype B, CRF02_AG, A, C, CRF01_AE, G, D, CRF12_BF, CRF05_DF, F, CRF45_cpx


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Page 1   listing Isolate 1 to Isolate 100 from Total 2203 Clinical PR Isolates

00-00260 00-00260 None    N37C, I64V, V77I  
00-00970 00-00970 None    L63A  
02-00055 02-00055 None    K14R, E35D, N37DH, R41K, L63P, A71T, V77I, I93L  
02-00180 02-00180 None    E35D, R41K, I64V  
02-00622 02-00622 None    I15V, E35D_TD, M36L, N37D, R57K, I62V, L63P, I93L  
02-00641 02-00641 None    E35D, N37D, L63P, H69K, A71T  
02-00679 02-00679 None    L63A  
02-00732 02-00732 None    T12A, L19I, R41K, I62V, V77I, I93L  
03-00127 03-00127 None    T12A, I13V, L19I, N37S, R41K, L63P, V77I, I93L  
03-00136 03-00136 None    K14R  
03-00148 03-00148 None    K14R, E35D, R41K, L63P, A71T, V77I, I93L  
03-00336 03-00336 None    T12TI, N37D, R41K, L63P, V77I, I93L  
04-00370 04-00370 None    L10I, K14G, E21K, L63T, I72T, V77I, I93L  
04-00518 04-00518 None    E35ED, N37E, I62V, L63H  
04-00611 04-00611 None    T12A, N37S, R41K, D60E, Q61E, I62V, L63P, V77I, I93L  
04-00720 04-00720 None    G16E, R57K, L63T, E65D, I72T, V77I, I93L  
05-00148 05-00148 None    I13V, I15V, E35ED, N37E, R41K, A71T, I93L  
05-00282 05-00282 None   V11I L10I, N37S, R41K, R57K, D60E, I64V  
05-00501 05-00501 None    T12P, K14R, L19I, K20KT, E35D, K43R, L63P, V77I, I93L  
05-00576 05-00576 None    T12A, I13V, I15V, E35D, R41K, L63P, F99FL  
05-00604 05-00604 None  M46I  E35D, N37S, I62V, L63P, I64L, I72V, V77I, Q92K  
05-00638 05-00638 None    G16E, N37S, P39S, I62V, L63H, V77I  
05-00981 05-00981 None    L10IV, N37S, R41K, D60E, L63P, Q92E  
05-01170 05-01170 None    I15IV, E35ED, N37T, R41K, L63C, I64V  
06-00052 06-00052 None    I15IV, K20R, M36I, N37T, R41RK, I62V, L63P, V77I, I93L  
06-00178 06-00178 None    L10I, T12A, I13IM, R41K, R57RK, L63P, I64L, C67S  
06-00544 06-00544 None    Q61E, I62IV, L63PS, I64L, V77I, I93L  
06-00635 06-00635 None    L10I, E35D, R41K, I93L  
06-00668 06-00668 None    L10I, L63PS, I72L  
06-00856 06-00856 None    I13V, N37S, I62V, L63P, A71T, I72V, V77I, P79Q  
06-00875 06-00875 None    I13V, K20I, M36I, R41K, H69K, K70KR, V82VI, L89M  
06-00888 06-00888 None    E35D, L63Q, I64V  
06-00921 06-00921 None    L19I, K20R, E35D, L63P, I93L  
06-01006 06-01006 None    I15V, E35D, R41K, I62V, L63P, E65D, I93L  
06-01017 06-01017 None    N37NIT, L63P, A71T, V77I, P79S, I93L  
07-00185 07-00185 None    R41K, R57K, L63P, E65D  
07-00376 07-00376 None    I15V, L19I, M36I, R41K, H69K, L89M, I93L  
07-01003 07-01003 None    T12S, K14KR, L19I, K20KR, L63P, V77I, I93L  
07-01074 07-01074 None    L10V, I13V, L19P, K20I, M36I, P39PS, R41K, H69K, K70R, L89M  
07-01138 07-01138 None    N37NS, L63LFPS, V77I  
08-00284 08-00284 None    E35D, M36I, R41K, L63C  
08-00296 08-00296 None    L10I, E35D, N37S, I62V, L63A, A71T, V77I, I93L  
08-00337 08-00337 None    I13V, G16GE, E35D, M36I, Q61DE, I62V, L63HN, I64IV  
08-01517 08-01517 None    T12P, G16E, L19LV, I62V, E65D, I72V, I93L  
08-01543 08-01543 None    N37S, R41K, I62V, L63PS, I64M  
08-01977 08-01977 None    K14KR, L33V, N37A, L63P, I93L  
08-02260 08-02260 None    R57K, I62V, L63P, I64IM, I93L  
08-03089 08-03089 None    T12P, I13V, R41K, L63P, I64V, C67W, V77I, Q92K  
08-03555 08-03555 None    K20R, M36I, R41K, L63P, V77I, I93L  
08-03749 08-03749 None    E35D, P39S, R41K, L63P, A71V, I72T, V77I, I93L  
08-03876 08-03876 None    E35D, M36I, R41K, L63P, H69K, L89M  
08-03972 08-03972 None    E35D, N37D, R41K, I62V, L63P, H69Y, A71T, I72T, V77I, I93L  
09-00453 09-00453 None    I15IV, G17GDE, R41RK, L63P, V77VI, I93L  
09-00740 09-00740 None    L19V, N37A, I62IV, L63PS  
09-00775 09-00775 None    I13V, E35D, L63P, I64M, V77I  
09-01194 09-01194 None    N37C, I62V, L63P, A71V, V77I, P79S, I93L  
09-01311 09-01311 None    T12P, I13V, R41K, L63P, I64V, C67W, V77I, Q92K  
09-01318 09-01318 None    E35D, N37A, P39Q, R57K, L63T, I64M, A71V, I72T, I93L  
09-01462 09-01462 None    T12P, K14R, M36V, L63A  
09-01466 09-01466 None    E35ED, N37RT, R41K, I64V, V82I  
09-01655 09-01655 None    L10I, N37S, L63S, I64M  
09-01681 09-01681 None    T12N, M36I, I62V, L63P, I93L  
09-01724 09-01724 None    N37NS, P39PS, R41K, R57K, I62IMV, L63LGRV, A71V, V77VI, I93L  
09-02071 09-02071 None    N37C, L63Q, I64V, V77I  
09-02128 09-02128 None    L10V, I13V, L19P, K20I, M36I, R41K, L63LP, H69K, K70R, L89M  
09-02735 09-02735 None    T12TA, I13V, E35D, M36I, R41K, K45KR, R57K, L63S, I64M, H69K, L89M, I93L  
09-02961 09-02961 None    I13V, L19S, K20I, E35D, M36I, R41K, I64M, H69K, L89M  
10-00274 10-00274 None    T12P, K14KR, N37D, K43R, R57RK, D60E, I62IV, L63P, V77I, I93L  
10-00418 10-00418 None    N37C, P39Q, I62V, L63P, V77I  
10-00425 10-00425 None    E35D, R41K, R57K, I62V, L63P, C67H, V77I, I93L  
10-00457 10-00457 None    I15IV, E35D, R41K, I93L  
10-00783 10-00783 None    I13V, D60E, Q61E, I62V, L63P, I72V, T74S, V77I, L89M  
10-00852 10-00852 None    T12S, L19V, E35D, L63P, A71T, V82I, I93L  
10-00989 10-00989 None    E35D, P39PS, R41K, L63P  
10-01223 10-01223 None    I13AV, K14R, L19LP, K20I, M36I, N37S, R41K, I64IL, H69K, L89M  
10-02036 10-02036 None    L10I, I13V, I15V, L19I, N37Q, R57K, I62V, L63S, I64M  
10-02083 10-02083 None    T12A, K43R, I62V, L63P, V77I, I93L  
10-02311 10-02311 None    I15V, G16GE, N37S, P39S, R41RK, I64V G40GR 
10-02597 10-02597 None    I13V, P39Q, I62V, L63T, I64L, A71V, I72M, I93L  
10-02600 10-02600 None    K14R, E35D, R41K, D60E, I62IV, L63P, I72V, T74S, V77I, L89M  
10-02606 10-02606 None    I15V, Q18H, E35D, M36I, N37D, R41K, R57K, Q61S, A71AT, I93L  
10-02721 10-02721 None    I13V, I15V, K20R, M36I, N37K, R41N, H69K, L89M, I93L  
10-02737 10-02737 None    K14R, I15V, E35D, N37D, L63P, I72M  
10-02778 10-02778 None    T12A, L19I, E35D, R57K, L63P, V77I, I93L  
11-01366 11-01366 None    K14R, E35D, N37S, R41K, I62V, L63P, I93L  
11-02873 11-02873 None    L10I, E35D, R57RK, I62V, L63S, A71T, I72T, I93L  
11-03331 11-03331 None    K14R, I15V, E35D, N37S, R41K, I62V, L63S, E65D  
11-03847 11-03847 None    L10LV, T12TA, I15IV, R57RK, L63P, E65ED, V77VI, I93L  
11-04224 11-04224 None    T12S, K14KR, L19LQ, R41K, L63P, A71T, V77I, I93L  
11-04228 11-04228 None    L10I, K14R, E35D, M36MI, I62V, L63P, C67D, V77VI  
12-00037 12-00037 None    I13V, I15V, E35Q, N37E, L63P, V77I, I93L  
12-00569 12-00569 None    N37D, K43R, R57K, D60E, L63P, V77I, I93L  
12-00781 12-00781 None    E35D, M36I, R41K, I62V, L63S, I93L  
12-02073 12-02073 None    I15V, M36I, N37D, L63S, I72V  
12-02447 12-02447 None    M36I, N37D, Q61E, I62V, L63P, I64L, I93L  
12-02689 12-02689 None    T12K, G16AE, L19IT, E35D, N37D, I72V, I93L  
12-03556 12-03556 None    N37DE, D60E, I62V, L63S, A71V, V77I, I93L  
98-04222 98-04222 None    E35D, P39S, R41K, K43R, R57K, I62V, L63P, A71T, V77I, I93L  
99-01409 99-01409 None    L63P