<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Shcherbakova (2014)
Title Molecular epidemiology, phylogeny, and phylodynamics of CRF63_02A1, a recently originated HIV-1 circulating recombinant form spreading in Siberia.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 22
NumPts 22
Subtype CRF63_02A1, A + CRF02_AG, A

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
RU_5335 RU_5335 Unknown Unknown   V35T, E36A, S48SP, V60I, D121Y, K122E, I135T, S162A, K173R, Q174K, D177E, T200A, Q207A, R211K, V245Q, E248D, Y271F, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357R, R358G, G359S  
RU_5356 RU_5356 Unknown Unknown   V35T, T39L, V60I, D121Y, K122E, I135L, S162A, K173R, Q174K, D177E, G196K, T200A, Q207V, R211N, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, L301I, I326V, Q334H, G335D, R356K, M357G, R358G, G359S  
RU_5365 RU_5365 Unknown Unknown   V35T, E36D, T39L, V60I, D121Y, K122E, I135L, S162A, K173R, D177G, T200A, Q207A, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, L301I, I326V, G335D, R356K, M357R, R358G, G359S  
RU_6391 RU_6391 Unknown Unknown   V35T, V60I, D121Y, K122E, I135K, S162A, K173S, Q174K, D177E, I178M, T200A, Q207A, R211K, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, L301I, I326V, G335D, R356K, M357R, R358G, G359S  
RU_8112 RU_8112 Unknown Unknown   V35T, E36D, V60I, F77FS, D121Y, K122E, S162A, K173R, Q174K, D177E, T200A, Q207A, R211N, V245Q, E248D, A272P, K277T, T286A, E291D, V292I, I293V, P294T, K311R, I326V, G335D, R356K  
RU_8141 RU_8141 Unknown Unknown   V35T, E36D, V60I, D121Y, K122E, S162A, F171Y, K173R, Q174K, D177E, T200A, Q207A, R211N, V245Q, A272P, K277T, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357R, R358G, G359S, E370A, A371V, I375V, A376S, T377M, K390R, K395R, E399D, L452I, R461K, V467I, S468T, D471E, Q480H, L491S, K512R, L517I, Q520K, Q524K, K527E, A534S, A554S  
RU_8142 RU_8142 Unknown Unknown   V35T, E36D, D121Y, K122E, I135IT, S162A, K173R, Q174K, D177E, V179I, T200A, Q207A, R211S, V245Q, E248D, A272P, K281KR, T286A, E291D, V292I, I293V, P294T, I326V  
RU_8148 RU_8148 Unknown Unknown  K103N V35A, V60I, D121Y, K122E, S162A, K173R, Q174K, D177E, T200A, Q207T, R211N, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, S322A, D324N, I326V, G335D  
RU_8168 RU_8168 Unknown Unknown   V35T, E36D, V60I, K122E, I135V, S162A, K173R, Q174K, D177E, T200A, Q207A, R211K, V245Q, E248D, A272P, T286A, E291D, V292IT, I293V, P294T, L301M, I326V, E328D, G335D  
RU_8169 RU_8169 Unknown Unknown   V35T, E36ED, V60I, D121H, K122E, I135IV, I142V, S162A, K173R, Q174K, D177E, I178L, Q197QK, T200A, E203ED, Q207D, R211K, I244IV, V245Q, E248D, A272P, K277T, T286A, E291D, V292I, I293V, P294T, I326V, Q334E, G335D, R356K, M357R, R358G, G359S, V365I, E370A, A371M, I375V, V381I, K390R, E399D, L452I, D471E, Q480H, L491S, K512R, L517I, S519N, Q520K, Q524K, K527DE, E529ED, A534S, A554S W383W* 
RU_8498 RU_8498 Unknown Unknown   V35T, E36AD, T39TR, K43KE, V60I, D121Y, K122E, I135IT, S162A, K173R, Q174K, D177E, T200A, Q207A, R211N, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, L301I, I326V  
RU_8499 RU_8499 Unknown Unknown M41L  V35T, E36D, V60I, D121Y, K122E, I135T, S162A, K173R, Q174K, D177E, T200A, Q207A, R211S, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, R307K, V317A  
RU_8501 RU_8501 Unknown Unknown  V179E E6ED, V35T, E36D, V60I, K102R, D121Y, K122E, I135V, S162A, K173R, Q174K, D177E, T200AV, E203ED, Q207ADE, R211KN, V245Q, E248D, A272P, T286A, E291D, V292IT, I293V, P294T, I326V, G335D, R356K, M357R, R358G, G359S, E370A, A371V, I375V, K390R, K395R, E399D, V435I, L452I, D471E, Q480H, H483Y, L491S, K512R, L517I, S519N, Q520S, Q524K, K527E, A534S, A554S G490KR 
RU_8506 RU_8506 Unknown Unknown A62V  E6D, K11T, V35I, T39K, D123N, I135T, A158S, K173D, Q174K, D177E, Q207A, R211S, V245M, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T  
RU_8507 RU_8507 Unknown Unknown   V35T, E36D, V60I, D121Y, K122E, I135T, S162A, K173R, Q174K, D177E, T200A, Q207A, R211K, V245Q, E248D, A272P, K277R, T286S, E291D, V292I, I293V, P294T, L295M, L301I, I326V, G335D  
RU_8508 RU_8508 Unknown Unknown A62V  E6K, K11T, V35I, E36D, T39N, F77FS, K122E, D123N, K166R, K173L, Q174K, T200I, I202V, Q207A, R211S, E248D, A272P, K277KR, T286A, E291D, V292I, I293V, P294T, I326V, R356K, M357Q, R358G, G359S E344K 
RU_8510 RU_8510 Unknown Unknown   V35T, E36A, V60I, D121Y, K122E, I135T, S162A, K173R, Q174K, D177E, T200V, Q207A, R211N, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357R, R358G, G359S E344EK 
RU_8511 RU_8511 Unknown Unknown   K11T, V35T, E36ED, T39K, V60I, S68G, K102R, K122E, D123N, I135T, K173L, Q174K, D177E, T200TI, Q207AD, R211S, E248D, A272P, T286A, E291D, V292I, I293V, P294T, E297EG, I326V, G335D, R356K, M357K, R358G, G359S  
RU_8513 RU_8513 Unknown Unknown   V35T, E36D, V60I, D121Y, K122E, S162A, F171Y, K173R, Q174K, D177E, T200A, Q207A, R211N, V245Q, E248D, A272P, K277T, Q278R, T286A, E291D, V292I, I293V, P294T, D324E, I326V, G335D, R356K, M357R, R358G, G359S, H361HP  
RU_8515 RU_8515 Unknown Unknown   V35T, E36N, V60I, D121Y, K122E, I135T, S162A, K173G, Q174K, D177E, T200A, Q207A, R211K, V245Q, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, E297EK, I326V, G335D, R356K  
RU_8516 RU_8516 Unknown Unknown A62V, D67N, K70R, V75I, M184V K101E, G190S I31L, V35I, E36D, T39E, K122E, D123N, E138A, K166R, K173L, Q174KR, V179VI, Q207A, R211S, E248D, A272P, K277R, T286A, E291D, I293V, P294T  
RU_9096 RU_9096 Unknown Unknown   V35T, E36D, E40ED, V60I, D121Y, K122E, I135T, S162A, K173R, Q174K, D177E, T200V, E203D, Q207A, R211N, V245Q, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357R, R358G, G359S