Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Brooks (2013)
Title Local phylogenetic analysis identifies distinct trends in transmitted HIV drug resistance: implications for public health interventions.
Citation BMC Infect Dis
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 274
NumPts 274
Subtype B, C, CRF02_AG, A, F, CRF45_cpx, CRF01_AE, G, CRF13_cpx, D

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 274 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
CAN2013-002 CAN13-002 None    L10LI, I13V, I15V, G16GE, Q18QH, L19X, E35ED, N37NS, P39PS, L63LP, I64IV  
CAN2013-011 CAN13-011 None    P39S, R41K, L63AT, A71V, I72T, V77I, I93L  
CAN2013-013 CAN13-013 None    I13V, E35D, N37S, Q61N, L63P, Q92E  
CAN2013-014 CAN13-014 None    L10V, K14R, P39PT, I62V, L63P, I93L  
CAN2013-015 CAN13-015 None    I13V, E35ED, M36I, N37D, R41K, R57RK, I62IV, L63X, H69K, K70KR, L89M  
CAN2013-016 CAN13-016 None    I13V, K14R, R41K, L63P, V77I  
CAN2013-018 CAN13-018 None    E35D, N37S, R57K, L63P, I72V, V77VI  
CAN2013-021 CAN13-021 None    T12A, I15V, L19Q, M36I, L63C, I72V  
CAN2013-022 CAN13-022 None    T12S, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93L  
CAN2013-023 CAN13-023 None    E35D, N37T, R41K, R57K, I62V, L63P, I64L, I72V, V77I, I93L  
CAN2013-027 CAN13-027 None    E35D, N37Q, R57K, L63P, A71T, V77I, I93L  
CAN2013-031 CAN13-031 None  L90M L33I I13V, R41K, L63P, A71V, I93L  
CAN2013-033 CAN13-033 None    I13V, G16GE, E35D, M36I, R41K, H69K, L89M  
CAN2013-034 CAN13-034 None    I15V, E35ED, M36I, R41EK, D60DN, Q61E, I62V, L63P, I72IM, I93L  
CAN2013-035 CAN13-035 None  L90M  I13V, N37E, K45R, L63T, H69Y, A71V, V77I, I93L  
CAN2013-036 CAN13-036 None    T12S, I15V, M36MI, N37KR, R41N, L63P, H69K, V82I, I93L  
CAN2013-039 CAN13-039 None    L10I, I13V, K20I, E35D, M36I, R41K, C67Y, H69K, V82I, L89M  
CAN2013-043 CAN13-043 None    L10V, I62V, L63S, A71IV, V77I, I93L  
CAN2013-045 CAN13-045 None    K14R, M36MI, N37D, W42Y, L63P, A71V, V77I, I93L  
CAN2013-047 CAN13-047 None    L10IV, K20KR, M36I, R41RK, I62V, L63T, I64L, I93L  
CAN2013-049 CAN13-049 None    T12S, I15V, L19I, E35D, M36I, R41K, D60E, Q61E, L63P, H69Q, I93L  
CAN2013-061 CAN13-061 None    I15V, G16E, E35ED, N37NCSY, R41K, R57K, Q61E, I62V, L63Q  
CAN2013-063 CAN13-063 None    L63V, V77I, I93L  
CAN2013-069 CAN13-069 None    L10I, K14R, I15V, M36I, N37D, R57K, L63P, I72V, T91I, I93L  
CAN2013-071 CAN13-071 None    L19IV, E35D, M36MI, R41RK, L63P, I64L  
CAN2013-076 CAN13-076 None    L63LHPQ, I64IV, K70KR, I72IT  
CAN2013-078 CAN13-078 None    N37E, I62IV, L63P, I64IL, I72T, V77VI, I93L  
CAN2013-079 CAN13-079 None    K14R, I15V, L19I, E35D, N37D, L63P  
CAN2013-081 CAN13-081 None    I15V, E35D, N37D, L63V, I93L  
CAN2013-085 CAN13-085 None    E35D, N37S, R41K, L63Q, I64V, A71V, I72IT, V77I, I93L  
CAN2013-086 CAN13-086 None    L10LV, T12TA, K20R, M36I, R41K, H69K, L89M, I93L  
CAN2013-089 CAN13-089 None   V11I I15V, L19T, M36V, R41K, L63P, H69K, V82I, L89M, I93L  
CAN2013-093 CAN13-093 None    K20R, M36I, R41K, H69K, L89M, I93L  
CAN2013-096 CAN13-096 None    I15IV, L19T, N37NS, R41K, L63LP, H69HY, Q92K  
CAN2013-108 CAN13-108 None    L10I, I13V, G16E, E35ED, N37CS, I62IV, L63T, E65D, H69HY, K70KR, A71V, I72T, I93L P39P*QS 
CAN2013-109 CAN13-109 None    T12AS, Q18QH, M36MI, N37NS, R41K, I62V, L63P, I93L  
CAN2013-110 CAN13-110 None    L10I, I13V, G16E, E35ED, N37CS, I62IV, L63T, E65D, H69HY, K70KR, A71V, I72T, I93L P39P*QS 
CAN2013-111 CAN13-111 None    L10I, N37S, R41K, V77I, I93L  
CAN2013-112 CAN13-112 None    T12TAP, I15V, G16E, K20R, M36I, N37K, P39S, R41N, H69K, L89M, I93L  
CAN2013-113 CAN13-113 None    T12S, E35D, N37D, K43R, R57K, D60E, L63P, A71T, I72IV, V77I  
CAN2013-118 CAN13-118 None    T12S, K14R, I15V, L19I, M36V, R41K, L63P, H69K, K70R, I93L  
CAN2013-119 CAN13-119 None    T12S, K14R, I15V, L19I, M36V, R41K, L63P, H69K, I93L  
CAN2013-121 CAN13-121 None    I13V, I15IV, E35D, M36I, R41K, K45R, R57K, H69K, L89M  
CAN2013-123 CAN13-123 None    L10V, I13V, L63P, I64V, C67Y  
CAN2013-126 CAN13-126 None    I15V, L19T, M36I, R41K, R57K, L63S, H69K, V82I, L89M, I93L  
CAN2013-127 CAN13-127 None    I13V, K14R, K20I, M36I, R41K, H69K, I72M, L89M, I93M  
CAN2013-128 CAN13-128 None    T12S, I15V, L19I, M36MI, N37H, R41K, H69K, L89M, I93L  
CAN2013-131 CAN13-131 None    T12S, I15V, M36I, N37K, R41N, L63V, H69K, L89M, I93L  
CAN2013-132 CAN13-132 None    I13V, K14R, N37S, L63PST, V77I  
CAN2013-134 CAN13-134 None    T12S, I15V, M36I, R41K, L63LV, H69K, L89M  
CAN2013-135 CAN13-135 None    T12S, I15IV, L19IT, M36I, N37K, R41N, L63LP, H69K, L89LM, I93L  
CAN2013-140 CAN13-140 None  M46ML  I13V, I15V, L19I, P39S, L63P, I64V  
CAN2013-141 CAN13-141 None    R41K, H69HY, K70KR, A71AV, V75VI, I93L  
CAN2013-154 CAN13-154 None    T12P, L19I, N37C, R57K, D60E, Q61E, I62V, L63P, G68E, A71T, I72V, V77I, I93L  
CAN2013-157 CAN13-157 None    I15V, E35D, N37S, R41K, L63P, I93L  
CAN2013-159 CAN13-159 None    T12P, L19I, K20R, L63P, C67S, A71T  
CAN2013-161 CAN13-161 None    R41K, D60E, L63P, C67S, Q92QE, I93IM  
CAN2013-164 CAN13-164 None    L10I, I15L, L33V, N37IT, R41K, I62V, L63P, I64V, I93L  
CAN2013-167 CAN13-167 None    K14KR, R41K, K43R, I62V, L63P, V77I P39P*QS 
CAN2013-170 CAN13-170 None    I15V, E35D, N37D, L63V, I93L  
CAN2013-171 CAN13-171 None    I13IV, K14KR, I15V, L19LI, P39S, L63P, I64V  
CAN2013-172 CAN13-172 None    E35D, N37NS, P39PS, I64V, V77I  
CAN2013-174 CAN13-174 None    T12TA, K14KR, N37S, R41K, L63P, V77I, I93L  
CAN2013-179 CAN13-179 None    T12S, E35D, I62V, L63P, A71V, I93L  
CAN2013-180 CAN13-180 None    P39L, I62V, L63P, A71V, V77I, I93L  
CAN2013-183 CAN13-183 None    R41K, D60E, I62V, L63P, A71T, I72T  
CAN2013-188 CAN13-188 None  L90M  L10I, L19T, E35D, M36I, R41K, R57K, L63P, A71T, I93L  
CAN2013-189 CAN13-189 None    I15V, R41K, I64IV, V77I, I93L  
CAN2013-190 CAN13-190 None    L10V, K14R, K20R, M36I, N37K, R41N, H69K, L89M, I93L  
CAN2013-192 CAN13-192 None    I13V, K14R, I15V, L19I, P39S, L63P, I64V  
CAN2013-193 CAN13-193 None    T12S, I15V, L19V, E35ED, M36I, L63C, I72V  
CAN2013-196 CAN13-196 None    K14R, L63P, I72V  
CAN2013-197 CAN13-197 None    M36I, R41K, D60E, L63T, H69K, L89M, I93L  
CAN2013-198 CAN13-198 None    E35D, N37S, R41K, L63PS, I64V, E65ED, V77I  
CAN2013-199 CAN13-199 None    K14R, N37D, L63P, I93L  
CAN2013-201 CAN13-201 None    L10V, I13V, L19P, K20I, M36I, R41K, L63A, H69K, L89M  
CAN2013-206 CAN13-206 None    I15V, N37S  
CAN2013-207 CAN13-207 None    I13V, G16GE, K20I, E35D, M36I, R41K, I64IM, H69K, L89M  
CAN2013-210 CAN13-210 None    E35D, N37S, R41K, I62V, L63P, I93IL G49GEKR 
CAN2013-219 CAN13-219 None    T12E, E35D, L63P, I72V, F99FL  
CAN2013-220 CAN13-220 None    I15V, N37NS, R41K, L63C, I93L  
CAN2013-226 CAN13-226 None    L10V, I13V, I15IV, E35D, M36I, R41K, H69K, K70KR, L89M  
CAN2013-228 CAN13-228 None    I15V, L19R, M36I, N37T, R41K, I62V, L63C, I93L  
CAN2013-231 CAN13-231 None    T12TS, K14KR, I15V, G16GE, L19LQ, R41K, I62V, L63C, I93L  
CAN2013-232 CAN13-232 None    L10LI, T12AS, I15IV, N37ND, R41K, I62V, L63C, I93L  
CAN2013-235 CAN13-235 None    E35D, N37D, R41K, R57K, I62V, L63S, A71V, I93L  
CAN2013-240 CAN13-240 None    I15V, E35D, N37D, I62V, L63P, I93L  
CAN2013-241 CAN13-241 None    K14R, I15V, M36I, R41K, I62V, L63C, I93L  
CAN2013-245 CAN13-245 None    M36I, N37S, L63P, V77I, I93L  
CAN2013-247 CAN13-247 None    T12E, E35D, M36I, R41K, K43R, L63P, A71V, V75I, I93L  
CAN2013-248 CAN13-248 None    T12DEKN, E35D, M36I, R41K, L63P, I93L  
CAN2013-250 CAN13-250 None    G16E, L19I, K20R, L63C, Q92K  
CAN2013-255 CAN13-255 None    I15V, E35D, M36I, R41K, K45KR, I62V, L63C, V77VI, I93L  
CAN2013-257 CAN13-257 None    K14KEMV, E35D, N37D, I62V, L63P, A71V, I93L  
CAN2013-258 CAN13-258 None    I15V, M36I, I62V, L63C, I93IL  
CAN2013-263 CAN13-263 None    I15V, Q18H, E35D, M36I, R41K, I62V, L63C, I93L  
CAN2013-269 CAN13-269 None    I15V, E35D, M36I, R41K, L63C, I93L  
CAN2013-270 CAN13-270 None    L10V, I13IV, I15V, K20KR, E35D, M36I, L63LI, H69K, K70KR, L89M  
CAN2013-271 CAN13-271 None    T12E, E35D, M36I, L63P, I93L  
CAN2013-272 CAN13-272 None    I15V, N37S, L38M, R41K, K43KR, I62V, L63C, I93L  

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