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References

Author Iamarino (2012)
Title BF integrase genes of HIV-1 circulating in Sao Paulo, Brazil, with a recurrent recombination region.
Citation PLoS ONE
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
NumIsolates 157
NumPts 157
Subtype B, F, C


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Page 1   from Isolate 1 to Isolate 100 from Total 157 Clinical IN Isolates

SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
B.BR.0403 B.BR.0403 None    K14R, M22L, L28I, V37I, S39C, L45V, I72V, K156N, K211R  
B.BR.0407 B.BR.0407 None    V31I, I113V, T122P, H171Q, K211R, K264R  
B.BR.0416 B.BR.0416 None   V151I A21S, V31I, V201I, Q216H  
B.BR.0423 B.BR.0423 None    S17N, V31I, M50T, T124A, K156S, V165I, V201I, D256E  
B.BR.0425 B.BR.0425 None    S17N, V31I, S39SC, L101I, T112TI, T125TA, V201VI  
B.BR.0433 B.BR.0433 None   V151I L45V, I72V, Q216H, L234H R284G 
B.BR.0446 B.BR.0446 None    S17N, I72V, E96D, L101I, T124A, K156N, E198Q, V201I, S230N, D256E S283G 
B.BR.0457 B.BR.0457 None   V151I E10D, A21S  
B.BR.0471 B.BR.0471 None    D6N, K7E, E11D, V31I, V32I, I72V, L101I, V201I, D207N, K211T, D256E  
B.BR.0473 B.BR.0473 None   V151I S17N, L28I, I72V, S119P, V201I  
B.BR.0475 B.BR.0475 None    E11D, S24A, T125A, I135V, F181L, V201I, T206S, I220F  
B.BR.0480 B.BR.0480 None    R20K, V31I, I72V, L101I, T122I, T124N, G193E, V201I, D256E D286N 
B.BR.0484 B.BR.0484 None    D6S, K7E, R20K, L28I, P30A, I72V, V201I, T206S, L234I  
B.BR.0486 B.BR.0486 None    D6N, K7E, L28I  
B.BR.0488 B.BR.0488 None    D6T, K7E, E10D, V32I, I72V, T112I, T124N, T125A, V201I, T218S, K219Q, N222K, S230N  
B.BR.0497 B.BR.0497 None    V31I, L101I, I135V, K173R, F181L, V201I, T218I, A265V  
B.BR.0510 B.BR.0510 None    E10D, A21S, V31I, M50I, L101I, S119P, T122I, S230N  
B.BR.0513 B.BR.0513 None    K14R, V31I, S39C, K71R, I72V, E87D, S119P, T125A, H171Q, K173R, V201I, I203M, D253E  
B.BR.0514 B.BR.0514 None    A21S, V31I, K34R, I72V, L101I, T206S, A265V S283G 
B.BR.0516 B.BR.0516 None   V151I E10D, A21S, V31I, L101I, V201I  
B.BR.0523 B.BR.0523 None    L101I, K156N, V201I, T206S, E212V, K219T, I220L, A265V  
B.BR.0535 B.BR.0535 None   V151I V31I, T125A, V126L, K127R, T206S  
B.BR.0540 B.BR.0540 None   V151I S17N, A21S, A23V, K46Q, I72V, T124N, T125A, V126L  
B.BR.0605 B.BR.0605 None    E13Q, K14R, L28I, S39C, I203M  
B.BR.0609 B.BR.0609 None    S17N, M50I, I72V, V88I, K111R, I113V, T124A, T125A, K156N  
B.BR.0633 B.BR.0633 None   V151I I72V, I113V, S119T, T124N, T125A, T206S, K211R, E212I, T218I, L234I, D256E  
B.BR.0645 B.BR.0645 None    S17N, V31I, S119G, T122I, T124N, T125A, G163E, V201I, D256E  
B.BR.0649 B.BR.0649 None    E11D, S24N, L28I, S39C, I72V, T112M, I203M, V249I  
B.BR.0670 B.BR.0670 None   V151I D25E, I72V, T125A, V126L  
B.BR.0672 B.BR.0672 None   V151I D25E, I72V, T124A, T125A, V126L  
B.BR.0689 B.BR.0689 None   V151I D6N, K7E, L28I, S39C  
B.BR.0695 B.BR.0695 None    D6S, K7E, E10D, I72V, S119P, K156N, K211R  
B.BR.0731 B.BR.0731 None    G4R, V31I, S39C, M50I, G82R, G134E, V201I, R224Q, D232E, L234F, D270E  
B.BR.0880 B.BR.0880 None   V151I A23V, V31I, I72V, V201I  
B.BR.0904 B.BR.0904 None    E11D, L28I, V37I, S39C, L101I, K111A, T112A, S119P, T125A, K273N  
B.BR.0907 B.BR.0907 None    E10D, L101I, S119G, T122I, T125A, V201I  
B.BR.0935 B.BR.0935 None    M22L, V37I, S39C, L45I, I72T, L74I, T218S, S230H, D232E V281M 
B.BR.0946 B.BR.0946 None   V151I E11D, V31I, S57N, I72V, I208V, K211T, I220V  
B.BR.1006 B.BR.1006 None    D6T, K7E, K14R, V31I, V32I, I72V, T206S, T218I, L234I, D256E  
B.BR.1008 B.BR.1008 None   V151I E11D, V31I, S119G, T122I, T125A, V201I D286N 
B.BR.1009 B.BR.1009 None    S24G, D25E, L45I, S119G, T122I, T124N, T125A, M154I, V165I, K211R, I220V  
B.BR.1013 B.BR.1013 None    D6E, S17N, A21S, S39C, L45Q, V201I, I208L, K211R, E212T, T218I, K219N, N222K, L234I, I257T  
B.BR.1033 B.BR.1033 None   L74M S17N, L28I, P30A, T124A, K156N, N222K, D279G R284G 
B.BR.1034 B.BR.1034 None    E10D, A21S, V31I, S39C, L101I, K188R, K211Q, Q216H, S230N  
B.BR.1036 B.BR.1036 None    E11D, S39C, L101I, I113V, S119P, G193E, V201I, I208M, D279G  
B.BR.1037 B.BR.1037 None   V151I V31I, I113V, T124N, T125A, V165I, K215N, D256E  
B.BR.1039 B.BR.1039 None    S17N, I72V, T124A, M154I, V165I, V201I, D229E, S230N S283G 
B.BR.1042 B.BR.1042 None    E10D, A21S, V31I, I73V, L101I, D253E  
B.BR.1046 B.BR.1046 None    D6N, K7E, E11D, S24N, M50I, T124A, T206S, I217V, T218S, K219Q, I220L, N222K, L234I S283N 
BF.BR.0042 BF.BR.0042 None   V151I R20K, I72V, L101I, V201I, K211R, T218I  
BF.BR.0441 BF.BR.0441 None    F100Y, L101I, T125A, M154L, L234V, D256E S283G 
BF.BR.0518 BF.BR.0518 None    S17N, L28I, P30A, I84L, L101I, T112I, S119P, T124A, T125A, K136Q, V201I, L234V, D253E, D256E S283G 
BF.BR.0534 BF.BR.0534 None   V54I E11D, S17N, M50I, I72V, S119T, T124A, T125A, K136Q, V201I, A205S, K211R, L234V, D256E S283G 
BF.BR.0539 BF.BR.0539 None   V151I E11D, I60M, I72V, I84L, L101I, S119A, T122I, T125V, V201I, K215N  
BF.BR.0543 BF.BR.0543 None    E10A, E11D, S17N, V31I, I72T, L101I, K103R, S119P, T122I, T125A, K136N, K156N, V201I, L234V, D256E S283G 
BF.BR.0612 BF.BR.0612 None    I72V, G82R, S119T, G134R, K156N, V201I, L234V, D256E, R269K S283G 
BF.BR.0634 BF.BR.0634 None    E11D, S17N, I84L, L101I, T112I, S119P, T124A, T125A, K136Q, V165I, V201I, A205S, K211R, T218I, L234V, D256E S283G 
BF.BR.0639 BF.BR.0639 None    S17N, S39C, I72V, S119P, T122I, T125A, V201I, T206S, Q216H, K219N, D278N  
BF.BR.0658 BF.BR.0658 None    T206S, K215N, Q216N, D256E  
BF.BR.0665 BF.BR.0665 None    E10D, A21S, V31I, V32I, I72V, L101I, T122I, T124A, T125V, V165I S283G 
BF.BR.0683 BF.BR.0683 None    S17N, G59E, I72V, L101I, S119P, T124A, T125A, V201I, A205S, K211R, L234V, D256E S283G 
BF.BR.0694 BF.BR.0694 None    K7R, E11D, A21S, V32I, I72V, I203M S283N 
BF.BR.0708 BF.BR.0708 None    E11D, L28I, V31I, V32I, V37I, I72V, L101I, T112A, I135V, G193R, V201I, T206S, L234I, A265V S283G 
BF.BR.0709 BF.BR.0709 None   E138D S17N, K34R, M50L, I72V, L101I, K111Q, S119G, T124N, T206S, D207E, Y227F, D232E, D253Y, D256E, A265V V281A, R284T, Q285P 
BF.BR.0712 BF.BR.0712 None    E10D, A21S, V31I, I73V, L101I, D253E  
BF.BR.0724 BF.BR.0724 None    S17N, V31I, I72V, I84L, L101I, S119P, T124A, K136L S283G 
BF.BR.0746 BF.BR.0746 None    V31I, D41N, M50T, V165I, V201I, K211R, K219N, I220L G47E, S283G 
BF.BR.0826 BF.BR.0826 None    D6T, E10D, Y15S, S17N, N27G, V32I, M50I, V88I, L101I, T125A, I135V, A205S, D256E R284G 
BF.BR.0869 BF.BR.0869 None    S17N, I72V, I84L, L101I, S119T, T124A, K136Q, V201I, T218I, L234V, D256E S283G 
BF.BR.0870 BF.BR.0870 None   G163R S17N, S24G, D25E, E35A, S39N, L45V, I72V, I84M, K111R, S119T, T125A, K136Q, V201I, A205S, K211R, L234V, D256E S283G 
BF.BR.1005 BF.BR.1005 None    S17N, L28I, E35K, I60V, I72V, L101I, E157K, E170K, R187K, R199K, E212K, K215N, K244E, R262K, D279G E152K, G190E, E198K, D256K, A282T, S283G 
BF.BR.1012 BF.BR.1012 None   V151I V31I, I72V, I84L, L101I, T124N, D256E  
BF.BR.1023 BF.BR.1023 None    E11D, V31I, V32I, V37I, I72V, T112A, S119P, T122I, T125A, V201I, K211R, D256E  
BF.BR.1027 BF.BR.1027 None    S17N, A21S, A23V, D25E, V31I, E69K, G70E, I113V, T124A, T125A, M154I, E157K, D167E, T206S, D253E  
BF.BR.1031 BF.BR.1031 None   V151I I72V, A80S, L101I, E198D  
BF.BR.1038 BF.BR.1038 None   V151I S17N, A21S, A23V, V31I, L101I, T112I, M154I, V201I, T206S  
BF.BR.1049 BF.BR.1049 None   V151I K7R, I72V, T124S, T125A, V126L, A205S, L234I, D256E  
BF.BR.1056 BF.BR.1056 None   V151I E11D, V31I, I72V, V75A, K211R, A265V  
BF.BR.1074 BF.BR.1074 None    D6S, K7E, K14R, V32I, S39C, I72V, H183Y, T206S, L234I  
BF.BR.1094 BF.BR.1094 None   V54I, T97A, G163R E11D, S17N, A21S, I72V, I84L, L101I, S119T, T124A, T125A, K136Q, S153A, V201I, A205S, K211R, Y227F, L234V, D256E S283G 
BF.BR.1235 BF.BR.1235 None    S17N, R20K, I72V, I84L, S119T, T124A, K136Q, V201I, K211R, T218I, L234V, D256E S283G 
BF.BR.1365 BF.BR.1365 None   V151I E11D, N18S, S24G, L28I, I72V, L74I, E96D, V150A, I208L, E212A, K215Q, N254H, D256E S283G 
BF.BR.1379 BF.BR.1379 None    A23V, I60M, I72V, A91S, Y99F, K188R, K211R, Q216H, S230N, I268L, D270H S283G 
BF.BR.1413 BF.BR.1413 None    E11D, S17N, V31I, I84L, L101I, K111R, S119P, T124A, T125A, K136Q, I161T, G163N, V165I, K211R, T218I, L234V, D256E S283G 
BF.BR.1415 BF.BR.1415 None    D6N, K7E, Q9P, V31I, L45P, I72V, I113V, T125A, T206S, T218S, L234I  
BF.BR.1426 BF.BR.1426 None    E11D, S17T, V32I, V37I, L101I, I113V, T125A, V165I, V201I, L234V, D256E S283G 
BF.BR.1433 BF.BR.1433 None    K7Q, A21S, V31I, D41N, T125V, V126M, G163E, K173E E69D, S283G 
BF.BR.1438 BF.BR.1438 None   V151I D6T, K7E, V31I, I72V, L101I, I113V, S119T, V201I, T206S, I208L, T218I, L234I I36L 
BF.BR.1458 BF.BR.1458 None   V54I S17N, S39N, I72V, I84L, S119T, T124A, K136Q, G163S, V165I, V201I, A205S, L234V, D256E S283G 
BF.BR.1467 BF.BR.1467 None    S17N, V31I, I72V, I84L, L101I, S119P, T124A, K136Q, F139Y, V201I, A205S, T218S, D232E, L234V, D256E S283G 
BF.BR.1470 BF.BR.1470 None    E11D, S17N, M50L, I72V, I84M, I113V, S119T, T124N, T125A, M154I, V165I, V201I, L234V, D256E S283G 
BF.BR.1550 BF.BR.1550 None   V151I V31I, L101I, V165I, V201I, K215N, K273N, Q274H S283C, R284T 
C.BR.0857 C.BR.0857 None    E11D, D25E, M50T, L101I, T112V, T124N, K136Q, K188R, V201I, T218I, L234I, I251L, A265V, R269K, D278A  
F.BR.1047 F.BR.1047 None   G163R K7R, S17N, V54T, I84L, S119T, T124A, T125A, K136Q, V201I, A205S, K211R, L234V, D256E S283G 
F.BR.1075 F.BR.1075 None    S17N, D55N, I60V, I84L, L101I, S119T, T124A, T125A, K136Q, G163S, V201I, A205S, K211R, T218I, L234V, D256E D116N, S283G 
F.BR.1485 F.BR.1485 None    E11D, S17N, I72V, K103R, I113V, S119P, T124A, T125A, K136Q, V165I, V201I, A205S, T218I, L234V, D256E S283G 
F.BR.1514 F.BR.1514 None   G163R E11D, V31I, V32I, V37I, M50L, L101I, S119A, T124A, T125A, K136Q, V201I, A205S, K211R, T218I, L234V, D256E  
F.BR.1521 F.BR.1521 None    K14R, R20K, S24N, I72V, L101I, S119T, T124A, T125A, I135V, K136Q, V165I, V201I, A205S, T218I, L234I, D256E S283G 
F.BR.1522 F.BR.1522 None    R20K, I72V, L101I, T112I, S119T, T124A, T125A, I135V, K136Q, V165I, R199K, V201I, A205S, T218I, L234I, D256E S283G 
F.BR.1526 F.BR.1526 None    E10D, E13D, V32I, D41N, I72V, I84L, L101I, T112V, S119T, T124A, K136Q, V165I, V201I, A205S, T218I, L234V, D256E S283G