<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Bessong (2013)
Title Genetic analysis of HIV-1 integrase sequences from treatment naive individuals in northeastern South Africa.
Citation Int J Mol Sci
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 88
NumPts 88
Subtype C, F, A

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
08BBVCT04 08BBVCT04 None    D25E, M50I, I72V, L101I, T112V, T124S, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
08BBVCT05ZA 08BBVCT05ZA None    D25E, V31I, K34R, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D253G, S255Q, D278A, S283G V250A, I251M, N254Y, D256H 
08BBVCT06 08BBVCT06 None    D25E, I84M, L101I, T112V, T124A, T125Q, K136Q, V201I, L234I, S283G, R284G, D288N  
08BBVCT07ZA 08BBVCT07ZA None    S17N, V31I, L101I, T112V, T124A, T125A, G134D, I135V, D167E, V201I, T206S, K211R, T218I, K219Q, L234I, A265V, D278A, S283G, R284G, D288N  
08BBVCT09 08BBVCT09 None    K14R, D25E, V31I, F100Y, L101I, T112V, T124N, T125A, K136Q, G163V, V201I, T206S, T218I, L234I, A265V, R269K, D278A, S283G  
08BBVCT10ZA 08BBVCT10ZA None    K14R, S17N, D25E, L45Q, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T210V, L234I, A265V, D278A, S283G  
08BBVCT13 08BBVCT13 None    E11D, S24N, D25E, V31I, L101I, T112V, T124N, T125A, K136Q, D167E, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G  
08BBVCT14ZA 08BBVCT14ZA None    D25E, K34R, I72V, L74I, F100Y, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, T218I, L234I, D278A, S283G  
08BBVCT16 08BBVCT16 None    D6E, E10D, D25E, V31I, L63I, L74I, A91T, T93TS, F100Y, L101I, G106A, T112V, T124A, T125A, K136Q, V201I, L234I, R269K, D278A, S283G  
08BBVCT17ZA 08BBVCT17ZA None    E11D, A21T, D25E, I72V, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, V201I, T218I, L234I, I251L, D278T, V281M, S283G  
08BBVCT18ZA 08BBVCT18ZA None    L45I, L101I, T112V, T124A, T125A, I135V, K136Q, F181L, K188R, V201I, T218I, L234I, I268L, D278A, S283G  
08BBVCT27 08BBVCT27 None   Q95K S17N, D25E, V31I, A91E, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, A265V, D278T, S283G  
08BBVCT28ZA 08BBVCT28ZA None    S17N, M50I, L101V, T112V, T124N, T125A, K136Q, T218I, L234I, D256E, S283G, D288N  
08BBVCT29 08BBVCT29 None    K14R, D25E, V31I, M50I, I60L, I72V, F100Y, L101I, T112V, T124A, T125A, K136R, V201I, T206S  
08BBVCT30ZA 08BBVCT30ZA None    K14R, S17N, D25E, L45Q, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T210V, L234I  
08BBVCT35 08BBVCT35 None    E11D, D25E, V31I, M50I, L63I, I72V, L74V, L101I, T112V, K136Q, D167E, S195T, V201I, L234I, V249I, D278A, S283G, R284G A239Y, K240L, L241A, L242W, W243V, K244P, G245A, E246H, G247K, A248G, V250G, I251G 
08BBVCT36ZA 08BBVCT36ZA None    K14R, D25E, V31I, M50I, I60V, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, Y194C, V201I, L234I, R269K, D278A, S283G  
08BBVCT38 08BBVCT38 None    D25E, V31I, M50I, I72V, L74I, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, I203M, K211R, T218I, L234I, N254H, A265V, R269K, D278A, V281M, S283G  
08BBVCT39ZA 08BBVCT39ZA None    S17N, D25E, V31I, I84M, F100Y, L101I, T112V, S119A, T124A, T125A, K136H, D167E, V201I, T218I, L234I, S283G  
08BBVCT41 08BBVCT41 None    F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G W108G 
08BBVCT43 08BBVCT43 None    I5L, S17N, S39N, M50I, L101I, T112V, T124A, T125A, K136H, D167E, K188R, V201I, L234I, A265V, K273R, D278A, S283G  
08BBVCT44ZA 08BBVCT44ZA None    K14R, S17N, D25E, S39C, L45Q, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D278A, V281M, S283G  
08BBVCT45ZA 08BBVCT45ZA None    E11D, D25E, V31I, K34R, L101I, T112V, T124N, K136Q, V201I F1V 
08BBVCT48 08BBVCT48 None    D25E, V31I, M50I, I84M, T112V, T124N, T125A, K136Q, D167E, V201I, K219N, N222K, L234I, R284G, D286N  
08BBVCT49ZA 08BBVCT49ZA None    S17N, D25E, V31I, I72V, L101I, G106A, T112I, T125V, K136Q, E157K, Q177H, T218I, L234I, D278A, S283G E198K, V201G_I, I204N_L 
08BBVCT50ZA 08BBVCT50ZA None    S17N, V31I, M50I, L74I, I84M, F100Y, L101I, T112V, S119T, T124A, T125A, G163E  
08BBVCT52 08BBVCT52 None    K14R, D25E, V31I, M50I, I60L, K71R, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, T218I, L234I, R269K, D278A, S283G  
08BBVCT53ZA 08BBVCT53ZA None    L45Q, L63I, L74I, I84M, E96D, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, D256E, D270E, D278A, S283G  
08BBVCT58 08BBVCT58 None    E13X, V31I, I84M, L101I, T112V, T124N, T125A, K136Q, D167E, V201I, K215N, T218I, L234I, A265V, R269K, D278A F1V 
08BBVCT63 08BBVCT63 None    K14R, D25E, V31I, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, D278A, S283G  
08BBVCT65 08BBVCT65 None    I89V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I  
08BBVCT73ZA 08BBVCT73ZA None    E11D, D25E, K34R, M50I, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
08BBVCT75 08BBVCT75 None    K14R, D25E, L45Q, M50I, L101I, T112V, T124A, T125A, G134S, K136Q, V201I, T218L, K219N, N222K, L234I, S255G, D278A, S283G  
08BBVCT76ZA 08BBVCT76ZA None    K34R, M50I, I72V, L101I, T112V, S119T, T124N, K136Q, V201I, L234I, S255G, I267V, D278A, S283G  
08MB01ZA 08MB01ZA None    K14R, D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, K215N, T218I, L234I, A265V, R269K, D278A, S283G  
08MB04ZA 08MB04ZA None    D25E, V31I, M50T, I72V, I84L, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218L, L234I, A265V, R269K, D278A, S283G  
08MB08ZA 08MB08ZA None    K14R, L45Q, I72V, L101I, T112V, T124A, T125A, I135V, K136N, D167E, F181L, V201I, L234I, S255G, I268L, R269K, D278A  
08MB09ZA 08MB09ZA None    K14R, D25E, V31I, L45Q, I72V, Y99F, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218L, L234I, D278A, S283G  
08MB12ZA 08MB12ZA None    K7R, K14R, D25E, V31I, M50I, D55N, L101I, T112I, T124A, T125A, K136Q, G163E, V201I, T206S, T218L, L234I, D278A, S283G, D288N  
08MB13ZA 08MB13ZA None    D25E, V31I, M50T, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
08MB14ZA 08MB14ZA None    V31I, M50I, I72V, L101I, T112V, T124S, T125V, K136Q, G163V, V201I, T206S, T218I, L234I, I251L, A265V, R269K, D278A, S283G  
08MB16ZA 08MB16ZA None    S17N, D25E, V31I, L45Q, M50I, I72V, F100Y, L101I, T112V, S119T, T124N, T125A, K136Q, V201I, T218I, L234I, D256E, A265V, D278A, S283G, D286N  
08MB17ZA 08MB17ZA None    S17N, M50I, I72V, P90T, F100Y, G106A, T112V, T124A, T125A, K136Q, V201I, L234I, R269K, D278A, S283G  
08MB18ZA 08MB18ZA None    K14R, D25E, V31I, M50I, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, V201I, T218I, L234I, D278A, S283G  
08MB19ZA 08MB19ZA None    S24G, D25E, V31I, M50T, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, S195C, V201I, T206S, K215N, T218I, L234I, V260I, D278A, S283G, Q285P  
08MB21ZA 08MB21ZA None    K7Q, S17N, V31I, S39N, M50I, I72V, L101I, T112I, T125V, K136Q, V201I, K211R, Y227F, L234I, N254K, S255G, R269K, D278A, V281M, S283G  
08MB22ZA 08MB22ZA None    S24N, D25E, M50I, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, V201I, L234I, D270E, D278A, S283G  
08MB23ZA 08MB23ZA None    E11D, D25E, V31I, L45Q, I72V, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, D278A, S283G  
08MB24ZA 08MB24ZA None    E11D, K14R, A21T, V31I, M50I, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A, S283G  
08MB25ZA 08MB25ZA None    D25E, L101I, T112V, T124A, T125A, K136Q, F181L, V201I, T218I, L234I, R269K, D278A, S283G  
08MB26ZA 08MB26ZA None    K14R, S24N, D25E, V31I, M50I, I72V, Y99F, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, Y227F, L234I, N254K, S255G, S283G  
08MB30ZA 08MB30ZA None    S17N, D25E, S39C, I72V, I84M, L101I, T112V, T125A, K136Q, K173R, V201I, T218I, Q221S, L234I  
08MB33ZA 08MB33ZA None    D25E, V31I, M50T, I72V, Q95P, L101I, T112V, T124N, K136Q, K188R, V201I, K211R, T218I, L234I, A265V, D278A, S283G  
08MB34ZA 08MB34ZA None    S17N, D25E, V31I, I84M, F100Y, L101I, G106A, T112V, S119A, T124A, T125A, K136Q, V201I, T206S, L213I, L234I, D278A, S283G R263S, K264E 
08MB36ZA 08MB36ZA None    K7R, K14R, V31I, M50I, I72V, P90S, L101I, T112V, T124S, T125A, K136Q, V150A, V165I, V201I, T206S, T218I, I220V, L234I, D278A, S283G F100H 
08MB37ZA 08MB37ZA None    S17N, V31I, M50T, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, I251L, A265V, D278A, S283G  
08MB40ZA 08MB40ZA None    E11D, S17N, S24D, D25E, K34R, M50R, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D278A, S283G  
08MB41ZA 08MB41ZA None    D25E, V31I, M50R, I72V, V77I, I84M, P90A, L101I, T112V, T124N, T125A, K136Q, D167E, K188R, V201I, K211Q, T218I, L234I, K273Q, D278A, S283G  
08MB42ZA 08MB42ZA None    L74I, L101I, T112V, T125P, K136Q, V201I, K211R, T218I, K219Q, L234I, S283G, D288N  
08MB43ZA 08MB43ZA None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, S119P, T125A, K136Q, V201I, T206S, T218I, K219Q, L234I, D278A, S283G  
08MB44ZA 08MB44ZA None    E11D, D25E, V31I, V37I, M50I, C56Y, I72V, P90S, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, I204L, T218L, L234I, D278A, C280S, S283G  
08MB45ZA 08MB45ZA None    D25E, V31I, M50I, I72V, L101I, T112V, T124S, T125A, K136Q, V201I, K215N, T218I, L234I, R269K, D278A, S283G  
08MB46ZA 08MB46ZA None    E11D, S17N, D25E, M50I, I72V, F100Y, L101I, G106A, T112V, T124G, T125P, K136Q, V201I, K211R, T218I, L234I, D278A, S283G  
08MB47ZA 08MB47ZA None    E10D, V31I, L74I, L101I, G106A, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G, R284G  
08MB48ZA 08MB48ZA None    S24G, D25E, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D278A, S283D  
08MB49ZA 08MB49ZA None    D6E, E10D, D25E, V31I, M50I, I72V, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, L234I  
08MB50ZA 08MB50ZA None    K14R, D25E, V31I, I72V, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, T206S, D207E, L213I, T218I, L234I, A265V, R269K, D278A, S283G  
08MB51ZA 08MB51ZA None    E11D, K14R, V31I, I72V, L101I, T112I, T124S, K136Q, V201I, K211R, T218I, L234I, R269K, K273Q, D278A, S283G, R284G, D286N  
08MB52ZA 08MB52ZA None    S24N, D25E, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, F181L, V201I, T218I, L234I, D278A, S283G  
08MB53ZA 08MB53ZA None    R20K, V31I, M50I, D55N, I60V, I72V, L101I, K111T, T112V, T124A, K136N, D167E, V201I, T218I, L234I, A265T, R269K, D278A, S283G  
08MB55ZA 08MB55ZA None    D6E, E10D, D25E, V31I, K34R, M50I, A91E, F100Y, L101I, T112V, S119R, T124N, T125A, K136Q, K188R  
08MB60ZA 08MB60ZA None    M50T, L101I, T112V, I113V, T124N, K136Q K46E 
08MB61ZA 08MB61ZA None    S17N, D25E, V31I, M50V, F100Y, L101I, G106A, T112V, T124A, T125Q, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
08MB62ZA 08MB62ZA None    D25E, V31I, I72T, T112V, T125V, K136Q, D167E, V201I, L234I, S283G  
08MB63ZA 08MB63ZA None    K14R, V31I, L45Q, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, H171L, V201I, L234I, D278A, V281M, S283G, R284G, D286N  
08MB64ZA 08MB64ZA None    K14R, V31I, L45Q, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, H171L, V201I, L234I, D278A, V281M, S283G, R284G, D286N  
08MB67ZA 08MB67ZA None    V31I, V37I, M50I, I60T, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, V201I, T218L, I220V, L234I, R269K, D278A, V281M, S283G, R284G, D286N  
08MB68ZA 08MB68ZA None    K14R, D25E, V31I, K34R, L101I, G106A, T112A, T125A, K136Q, K188R, V201I, T206S, L234I, I268L, D278A, S283G  
08MB69ZA 08MB69ZA None    D25E, K34R, M50T, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I  
08MB70ZA 08MB70ZA None    D25E, K34R, M50I, F100Y, L101I, T112V, T124N, T125A, V201I, T218I, L234I, A265V, D278A, S283G  
08MB71ZA 08MB71ZA None   V54I K14R, D25E, V31I, M50V, F100Y, L101I, K111Q, T112I, S119P, T124A, T125A, K136Q, V150A, V201I, I208L, T218L, L234I, D278A, S283G  
08MB72ZA 08MB72ZA None    E11D, D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, I200M, V201I, T218I, L234I, D278A, V281M, S283G  
08MB73ZA 08MB73ZA None   L74M S24N, D25E, K34R, I72V, F100Y, L101I, T112V, S119T, T125A, K136Q, K188R, V201I, T218I, L234I, D256E, D278A, S283G  
08MB74ZA 08MB74ZA None    D6E, K14R, S17N, V31I, M50T, L101I, T112V, I113V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A, S283G, R284G  
08MB75ZA 08MB75ZA None    E10D, D25E, L45Q, M50I, I72V, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, S255G, R269K, D278A, S283G  
08MB76ZA 08MB76ZA None    D25E, K34R, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, T218I, L234I, D278A, S283G S81C 
08MB77ZA 08MB77ZA None    K14R, S17N, S24D, D25E, V31I, S39C, L101I, T112V, T124A, T125A, V126T, K136Q, G163S, V201I, K211R, T218I, L234I, D278A, S283G  
08MB78ZA 08MB78ZA None    K14R, D25E, V31I, M50I, L101I, T112V, T124A, K136Q, G163E, V201I, T218L, L234I, R269K, D278A, V281M, S283G, R284G, D288N