Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Rolland (2011)
Title Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial
Citation Nat Med
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 68
NumPts 68
Subtype B, CRF02_AG


Clinical IN Isolates

0006 consensus_0006 None    S17N, L28I, L101I, T125A, I135V, V201I, I220L, D279G, R284G  
0053 consensus_0053 None    S17N, L101I, K111R, T112V, S119G, T122I, T124N, T125A, G163E, K211R, Y227F  
0062 consensus_0062 None    V31I, L101I, T124N, K156N, I182V, G193R, V201I, T218S, D232E, D256E  
0176 consensus_0176 None    I72V, P90S, T124N, T125V, M154L, K173R, V201I  
0223 consensus_0223 None    S17N, S39C, M50I, L101I, I113V, T124S, T125V, G134E, G163E, T218S  
0227 consensus_0227 None    I72V, L74I, T124TA, V201I, T206S, I208L, K211KR, E212A, K215N  
0287 consensus_0287 None    D6E, V32I, G70E, L101I, S119R, T124N, I208L  
0309 consensus_0309 None    E10D, E11D, S17T, S24A, L45G, L101I, T112A, S119G, T122I, T124N, T125A, D256E  
0322 consensus_0322 None    K7R, E11D, L101I, K111T, T122I, V281M  
0341 consensus_0341 None    E11D, S17N, M50T, L101I, K160N, K173R, D256E, S283G  
0346 consensus_0346 None    E11D, S24N, V31I, L101I, S119T, I135V, T206S  
0364 consensus_0364 None    A38N, S39C, L45Q, I72V, T125V, I182V, V201I, D207N, K211T  
0388 consensus_0388 None    E10D, L45V, I72V, L101I, K103R, S119P, T122I, M154L, K211R  
0491 consensus_0491 None    K7R, E11D, V32I, L74I, L101I, K111T, S119G, T124A, V201I  
0524 consensus_0524 None    E13D, R20K, D41N, L74I, K111T, T124A, T125A, V201I, K211R  
0525 consensus_0525 None    K7R, L101I, T124A, I141V  
0572 consensus_0572 None    V31I, L101I, S119G, T122I, T125A, K215N, D232E, A265V  
0648 consensus_0648 None    D6E, K14R, P30S, V31I, V77A, L101I, V201I, T206S  
0717 consensus_0717 None    K111T, T112A, T124A  
0762 consensus_0762 None    S17N, V31I, M50I, I72V, T124A, Y227F, S230N, S255K, A265V, R284G  
0823 consensus_0823 None   V151I E11D, I72V, L101I, T122I, T124N A21M 
0839 consensus_0839 None    N27NS, I72V, L101I, T112I, T124A, I135V, V201I, T206S  
0841 consensus_0841 None    M50I, L74I, V79A, L101I, V201I, I220V  
0879 consensus_0879 None    E10D, E11D, S17T, S24A, L45G, L101I, T112A, S119G, T122I, T124N, T125A, D256E  
0897 consensus_0897 None    V31I, L101I, T112V, T124N, M154MI, G163E, R187K, K188R  
0923 consensus_0923 None    E11D, R20K, S24G, D25E, S39C, M50I, L101I, S119P, T122I, G193E, V201I  
0938 consensus_0938 None    S17N, I72V, I113V, T124A, K156N, D167E  
0961 consensus_0961 None    K7R, S17N, I72V, T112I, T124A, K156N, V201I  
0965 consensus_0965 None    Q9X, D25X, L28X, V31I, M50I, E92X, G94X, L101I, I141V, T206TS, Y227F, S230G, D256DE A8P, V150S 
1027 consensus_1027 None    S17N, I72V, L101I, T124A, G163A, S255G, D256E, S283G, R284G  
1046 consensus_1046 None    K7Q, E11D, V31I, T93N, T122I, T124G, T125A, V201I, K211Q, T218S, S230N, C280S  
1047 consensus_1047 None   L74M S17N, L28I, K219N, I220L, N222K, N254D D253A 
1055 consensus_1055 None    D6E, S17N, S24G, D25E, L28I, I113V, T124N, T125A, K160Q, V165I, Y227F, S255G  
1115 consensus_1115 None    S17N, M50T, I72V, T124A, T125A  
1174 consensus_1174 None    E11D, S17T, A23V, I72V, I113V, S119P, T122I, T125A, H171Q, I203M, K211R  
1191 consensus_1191 None    E11D, E13D, S24N, L101I, K103R, S119P, T122I, T124A, V201I, D256E  
1211 consensus_1211 None    E11D, S17N, L63M, I72V, S123C, T124A, T125A, T206S, S230N  
1368 consensus_1368 None    R20K, D41N, M50T, I72V, T122I, T124N, G193E, I220V, D256E  
1399 consensus_1399 None    I84V, L101I, T112A, T125A, M154I, V165I, Q177L, F181Y, L234I  
1400 consensus_1400 None    S17N, A80S, L101I, T112V, T124A, T125A  
1478 consensus_1478 None    E11D, V31I, K111T, I113V, T206S  
1500 consensus_1500 None    E11D, V32I, M50I, A91E, L101I, K111Q, S119R, T124N, K136N, V201I, S283G  
1504 consensus_1504 None    V31I, I72V, T124A, K156N, V201I, K215S, D256E  
1512 consensus_1512 None    S17N, M50I, I72V, I84V, P90A, T124A, M154I, V201I, D253E, D256E  
1518 consensus_1518 None    I72V, V79A, L101I, K136KR  
1619 consensus_1619 None    E11D, E13D, V31I, M50MI, S57SN, L101I, S119G, T122I, T124A, G193E, K240R, N254K, S255K  
1709 consensus_1709 None    V31VI, V32VI, L101I, T125TA, M154L, V165I, V201I, V281M  
1799 consensus_1799 None    E10A, K14R, R20K, V31I, V32I, S39C, I72V, L101I, T112A, T124A, Q216H, L234V  
1897 consensus_1897 None    L45Q, T124N, T125A, K211R, Q214E, S230N  
1919 consensus_1919 None    T124A, H171Q, I208M, Q216H, I220L E212Y 
1926 consensus_1926 None    E11D, D25E, L45V, I72V, S119G, T122I, G163E, V201VI, D256E  
2000 consensus_2000 None    S17N, V31I, I72V, L74V, T112A, T125A, V126M, M154L, V201VI, K211KR  
2008 consensus_2008 None    E11D, R20K, V31I, K42KR, L45Q, S195T, I203M, N222K, S230N, R284G  
2136 consensus_2136 None    D6E, E10D, R20K, L45R, L101I, T124A, G163E, N254K, S255G, I267V, R284G, D286N  
2241 consensus_2241 None    D6E, S17N, V31I, I113V, T124N, V201I, A265V  
2254 consensus_2254 None    E11D, V32I, V37I, M50I, L101I, I113V, S119P, T125A, K173R, V201I, D207N, K211T, T218S, I220L, L234V  
2289 consensus_2289 None    E11D, V31I, L45Q, I60M, I72V, T125A, K156N, D279G  
2305 consensus_2305 None    E11D, A21AT, S24SN, D25DE, S39SN, I72V, I73IV, S119P, T122I, T124TA, T125TA, V201I, S230N, D232E, I251L, A265V  
2349 consensus_2349 None    L63I, L74I, T112I, V201I, D256E  
2437 consensus_2437 None    E11D, D25E, V31I, S119G, T122I, T125A, K156N, V201I, A205S, D256E  
2495 consensus_2495 None    E11D, A21T, M22I, A23V, L28M, V32I, I72V, I84M, T112A, S119P, T124A, T125A, M154L  
2586 consensus_2586 None    M50I, K127R, G163E, I208L  
2622 consensus_2622 None    S17N, I72V, V79A, L101I, T124A, V201I, T206S  
2649 consensus_2649 None    D6E, E10D, K14KR, K71KR, L101I, K156N, I208L, S230N, R231K, D256E  
2667 consensus_2667 None    S17N, V31I, L45Q, L74I, L101I, T124A, T125M, G163E, V201I, Q221K, N222K, S255K  
2696 consensus_2696 None    K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157Q, K160Q, V201I, I203M, T206S, I208L, T218I, L234I, A265V, S283G, D288N  
2717 consensus_2717 None    S17N, A49P, V77A, L101I, T124A, K160N, K211R  
2794 consensus_2794 None    P30S, L101I, T112A, K127T, N222K