Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Dennis (2012)
Title Phylogenetic insights into HIV transmission in North Carolina.
Citation AIDS
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 1238
NumPts 1238
Subtype B, D


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Page 1   listing Isolate 1 to Isolate 100 from Total 1238 Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
10010 10010 Unknown Unknown M41L, L210W, T215D  E36EA, T39TA, V60VI, K122E, I142V, S162C, T200TA, R211K, S251SI, P294PQ, I329IL, M357T  
10034 10034 Unknown Unknown M184V K103N, K238T V35M, V60I, R83K, K102R, I135T, K166R, K173E, P243H, V245E, D250E, A272P, K277R, E297K, I329L, F346Y, M357T, V365I, K366R, A376S, K390R  
10035 10035 Unknown Unknown   K20R, K122P, I135T, E169G, I178M, G196E, F214L, I293IV, Q334L, M357MT, A376T, T386I, K390R, A400T  
10118 10118 Unknown Unknown   K20R, V21VI, I50V, K122P, I135T, S162C, T200I, F214L, V245E, V292I, I293IV, E297K, K311R, G335C, K366KR, A376V, T386I, E399D, A400T  
10134 10134 Unknown Unknown   K122E, D123E, D177E, L283I, A288S, M357T, A376T, T377M, A400T  
10180 10180 Unknown Unknown L74V, M184V K103N, Y181C, K238T V111I, K122P, I135T, D177E, I178L, T200A, Q207E, R211K, F214L, H221Y, E248D, A272P, I293V, V314VI, V317A, Q334L, A376T, T386I, E399D, A400T  
10197 10197 Unknown Unknown   P4S, T165I, G196E, R211K, A272P, Q334N, R358K, K366R, A376T, A400T  
10208 10208 Unknown Unknown  A98G, K103N P4S, V35T, T39A, I135L, K173Q, R211K, A272S, A288S, M357T, S379G, T386I, K390R, A400T  
10218 10218 Unknown Unknown M41L, D67N, K70R, T215Y, K219E  V60I, K122E, D123N, S162A, D177E, I178M, T200A, E203EK, Q207E, V245MT, A272P, I293V, Q334C, R356K, A360T, A371V, I375V, A376V, K390R, A400T  
10234 10234 Unknown Unknown   A98S, K102Q, T200A, V245M, D250DE, A272P, I293V, Q334R, G335D, T369A, A371AV, K374KR, I375V, A376AT, S379G, T386TA, K390R, A400T  
10247 10247 Unknown Unknown T215C  K20R, S68G, N175H, D177E, K201I, R211K, A272T, T286A, I293V, Q334Y, T338S, R358RK, A371V, I375A, T386I  
10254 10254 Unknown Unknown   K32R, K122KE, I135V, T139TA, S162H, I180V, R211RK, T286A, E297AT, S322SA, F346Y, M357MT, T377M, I382V, K390R  
10257 10257 Unknown Unknown M41L, D67N, K70R, V75IT, T215F, K219E, N348I L100I, K103N V35T, A272P, K281R, I293V, I341F, M357T, A371V, A376T, T377LS, K390KR, A400T  
10262 10262 Unknown Unknown   K49R, R83RK, K102KR, I135V, T165IV, G196E, T200TI, I202V, R211REGK, I244V, D250DE, T286A, S322T, M357T, A376AT, T386I, A400T  
10268 10268 Unknown Unknown   K20R, K122E, S162C, Q207E, T286A, S322A, I326V, Q334Y, M357T, V381I, A400T  
10279 10279 Unknown Unknown M41L, M184MV, L210W, T215Y  S68SG, K122P, D123E, I135T, K166R, D177E, A272P, K277R, A288AS, I293V, V317A, Q334D, R358RK, G359S, A376S, T386I, A400T  
10305 10305 Unknown Unknown M41L, D67N, M184V, L210W, T215Y, N348NI K101E, G190A V21VI, E28EK, T39A, W88C, K122E, K166R, V189VI, R211K, Y271YH, K277R, T286A, E297K, I329L, G335S, R358K, V365I, T386I, K390R, A400T  
10308 10308 Unknown Unknown   V21VI, K64KR, A98AS, K104Q, K122KE, R211K, A272S, I293V, I329L, M357MI, K385KR, K390R, A400T V60VIM 
10311 10311 Unknown Unknown   A98S, K122E, A158S, K173E, Q207EG, R211K, V245E, R284RK, T286A, V292I, I293V, R358K, G359S, S379G, K390R  
10322 10322 Unknown Unknown L74LV, K219KN K103N, V179VDE, Y181C, G190GA V35VIM, V90VI, K122E, T200A, R211RK, L228LH, T240TS, K277R, L283I, I293V, K390R  
10325 10325 Unknown Unknown  V179D K11R, K20R, V35I, K122E, D123S, A158S, I159V, D177E, Q207E, R211K, V245Q, I293V, P294S, R358K  
10331 10331 Unknown Unknown   R83K, S162A, E169D, D177E, G196E, Q207E, R211K, A272P, K277R, I293V, E297R, K311R, G333D, T386I, A400I V108VA, Y339YC 
10336 10336 Unknown Unknown   R211K, F214L, V245K, A272P, K281R, A288T, S322T, Q334QR, A376T, V381I, K390R, A400T  
10341 10341 Unknown Unknown   A98S, K122E, A158S, T165I, Q197E, A272P, K277R, I293V, T296S, E297A, K311R, Q334HN, M357IT, R358K, A376AT, T377M, K390R, A400T  
10346 10346 Unknown Unknown   R83K, K122KE, K173Q, Q174QK, Q207QE, R211RK, V245E, A272P, K281KR, A360AT, K366KR, A376T, T386I, A400T  
10347 10347 Unknown Unknown  V108I V35IT, E36ED, T39TK, T69TA, V106VI, K122IV, K166R, D177E, I178L, Q207E, R211K, F214L, E248D, A272P, K277R, I293IV, A304AE, K311KR, S322AT, R358K, K366R, A376AT, A400T V60VIM 
10379 10379 Unknown Unknown D67DG, M184MIV K101E, Y181YC, G190S K122E, S162SC, T165I, Q174R, T200A, R211K, F214FL, E248D, A272P, T286A, I293V, E297K, G335D, R356K, M357K, A376T, K390R, A400T  
10399 10399 Unknown Unknown M41ML, M184V, T215Y K103N K20R, V35IT, K43KE, K122E, G196E, V245K, A272P, A288T, I293V, D324E, Q334E, M357MT, T369V, E370ED, S379G, K390R, A400T  
10419 10419 Unknown Unknown M184MIV L100LI, K103N, V108VI, P225PH K49KR, V60I, V90I, D121Y, K122E, I135T, S162A, T165I, E169D, N175H, G196E, T200A, F214L, V245Q, D250E, A272P, K277R, K281R, T286A, A288S, I293IV, T296S, E297K, Q334DN, G335D, R356K, M357R, K390R, E399D, A400T  
10427 10427 Unknown Unknown D67DG  V21I, E28EG, V111VL, D121H, K122E, I135T, D177E, T200A, I202V, A288S, I293V, K323KR, Q332H, G335C, M357T, T377L, E399D, A400L  
10448 10448 Unknown Unknown   K102KR, K122E, D177E, I178M, P243S, V245K, A272P, I326V, P345PS, G359S, V365I, T369A, A371AV, A376C, T377TI, K390R, A400T  
10485 10485 Unknown Unknown M184V  K122E, K166KQ, I202V, R211K, F214FL, P243T, A272P, I293V, E297A, P345PQ, R356K, M357L, A360T, A376S, K390R, A400T  
10505 10505 Unknown Unknown   V35VL, D121Y, K122E, K173Q, P176PQ, I178M, T200A, R211RK, A272P, K277R, G333E, G335N, R356RK, K390R, A400AT  
10506 10506 Unknown Unknown M184V, N348I Y181C V35M, S68G, K102Q, I135T, K173R, Q174K, F214L, H221Y, V245E, D250E, S251N, A272P, T286P, A288S, V292I, I293V, P294S, E297R, Q334M, T338S, F346L, V365I, A376T, K390R, E396D, E399D, A400T  
10516 10516 Unknown Unknown   K101KR, D123DE, I135IV, S162SC, Q207EIKV, R211RK, V245M, A272P, K277R, T286A, I293V, G333E, Q334H, K347KQ, M357MV, A376T, I382T  
10544 10544 Unknown Unknown D67N, K70R, M184V, T215FS  K122P, I142T, D177E, G196E, T200K, V245M, A272P, K277R, I293V, E297A, I326IV, Q334L, G335S, M357T, A371AV, A376T, T386I, K390R, A400T  
10567 10567 Unknown Unknown  K101N K20R, D123E, T200E, R211K, A272P, K277R, L283I, P294T, E297K, M357I, R358K, K390R, K395R, E399D  
10576 10576 Unknown Unknown   K22KR, S48T, R83K, K122E, I178IL, R211RK, V245VE, E248D, A272P, I293V, E297A, D324E, A376T, V381I, K390R, A400S  
10595 10595 Unknown Unknown V75M, F77L, M184V  P4T, S162DH, E169Q, D177E, T200I, Q207A, R211K, F214L, T286A, V292VI, R358K, K390R, A400T  
10608 10608 Unknown Unknown D67N, K70R, K219Q, N348I V179D, G190A K20R, K49R, D123E, S162A, D177E, E194G, E203G, V245M, D250DE, K277R, L283I, I293V, E297K, G333E, G335C, R356K, A376T, A400T  
10610 10610 Unknown Unknown A62V, M184V K103N E138Q, K173N, Q174K, T200A, Q207E, R211Q, V245M, A272P, K277R, E297A, V317A, S322T, D324E, A376T E89EK 
10611 10611 Unknown Unknown K70KR, L74V, M184V, K219Q K101P, K103KN, Y181IS K20R, T69N, D123E, I178M, V179I, I195IT, F214L, L228HR, A288S, I293V, E297A, G335S, M357T, R358K, A376T, S379C, V381I, A400T  
10615 10615 Unknown Unknown  K103N, K238T K20R, T69S, I135L, E138G, S162W, I178L, V179I, D237N, T286A, I293V, E297K, I326V, F346Y, M357T, T377V, A400T  
10623 10623 Unknown Unknown   K20R, D123E, I135T, S162C, T200A, E204D, Q207A, R211K, F214L, E248D, K249KQ, A272AT, K277R, L283LI, R284K, I293V, T296S, E297A, S322T, I329L, T338S, R356RKQ, M357IT, A360AT, K390R  
10635 10635 Unknown Unknown   V35I, V60I, T69N, R83K, K122KE, D123E, D177E, I178M, T200A, I202V, V245LQ, E248ED, K249KQ, D250DE, A272P, K281KR, I293V, E297K, E312Q, Q334C, R356RK, A376ST, T386X, A400T  
10639 10639 Unknown Unknown M41L, L210W, T215Y  P4T, D121H, K122E, K173N, D177E, R211K, E248D, D250E, A272P, K277R, L283I, I293V, G333E, Q334Y, R356RK, A360T, V365VI, K390R, A400T  
10646 10646 Unknown Unknown D67N, L210W, T215F Y181IN, G190GA I31L, V35I, T39TS, T69TN, K101KQ, K122E, I178M, R211K, V245M, I293V, V317A, R356K, R358RK  
10659 10659 Unknown Unknown   R83K, V90I, D123S, S162A, I178L, V179VI, G196E, T200A, E248D, A272S, K277R, I293IV, T338S, M357MT, T377M, K390R, A400S  
10672 10672 Unknown Unknown M184V K103N K101R, I135L, S162C, G196E, V245M, D250E, A288S, I293V, P313Q, V317A, F346Y, A376S, E399D, A400T  
10706 10706 Unknown Unknown   K49R, T69TA, A98S, K102KQR, D123E, I135T, E169D, I178L, V179I, G196E, V245M, V276VI, T286A, T296S, I329V, Q334QL, M357T, E370D, T386V, K390R  
10739 10739 Unknown Unknown   E6D, W88C, K104R, S162A, D177E, E203ED, Q207X, R211X, L283LI, I293V, E300Q, S322T, D324DE, I329L, R356RK, T377TIM, V381VI, A400S  
10765 10765 Unknown Unknown   K122KR, D123E, G196E, R211K, A272P, K281R, E291ED, K311R, I326IT, M357T, T369A, K390R, A400T  
10780 10780 Unknown Unknown   K122E, I135T, K166R, R211Q, A272P, K277R, I293V, I326V, Q334L, R358K, E370D, A376T, T386I, K390R  
10791 10791 Unknown Unknown   E6D, V106I, D123E, T200AE, L210LF, V245EK, E248D, A272P, K277R, I293IV, Q334P, A360T, S379G, T386TA, K390R, A400T  
10801 10801 Unknown Unknown   K20R, S162C, G196E, E291D, V292I, I293V, E297A, K311R, Q334Y, M357V, A400T  
10816 10816 Unknown Unknown L210W, T215D  K32KR, S68G, I135L, S162SDGN, T165TI, I178M, Q207K, V245M, K281KR, T286A, E297K, I326V, I329V, Q334E, M357S, Q367L, A371V, I375V, A376T, T386I, Q394L, A400T  
10828 10828 Unknown Unknown   I135IV, K173KQ, N175NH, I178M, K238KR, P243S, V245E, A272P, T286TA, K311KR, Q334QHKN, G335GD, M357S, A376T, T386IV, A400T  
10831 10831 Unknown Unknown D67N, K70R, M184V, T215F, K219E A98G V60VI, I142T, S162T, G196E, I202V, Q207QH, R211K, F214FL, V245M, A272P, K277R, T286A, Q334H, G335S, R356RK, G359GS, K366R, I375L, A376AS, K390R, A400T  
10839 10839 Unknown Unknown   D123E, I142V, K166R, K173E, D177E, I178V, I202V, R211K, F214L, V245T, A272P, V292I, K311R, Q334L, M357T, K390R, A400S  
10855 10855 Unknown Unknown D67N, K70R, M184V, K219Q A98G, Y318F K20R, Q207E, F214L, T286A, A288P, I293V, E297K, A304E, G359S, A360T, A400T  
10866 10866 Unknown Unknown  V179VD D121HY, K122KE, Q174D, D177E, G196E, T200A, A272P, A288G, I293V, G333DE, Q334N, K385R, K390R, A400T  
10921 10921 Unknown Unknown  K103KN, K238KT V35I, V118I, I135T, P170T, R211K, F214L, A272P, K281KR, E297K, A327V, R358RK, A360T, A376S, S379C, A400T  
10978 10978 Unknown Unknown   E53ED, K122E, D123DN, I142T, G196E, T200A, A272P, V292VI, I293IV, E297K, D324E, G333E, Q334N, M357T, K366R, A376T, A400T  
10990 10990 Unknown Unknown   E6K, T39A, K122E, A158AS, S162SC, D177E, I178M, Q207A, R211K, P243S, V245Q, E248D, A272PS, K275KR, K277R, Q278QH, T286A, I293V, E297A, I326V, G333E, Q334H, T338S, R356K, I375V, T377Q, S379C, K390R, A400AT  
11009 11009 Unknown Unknown  K238KT V35I, R83K, V90I, K122P, D177E, I195L, E248D, A272P, E297T, Q334C, R356K, M357T, E370D, T377Q, A400T I326F 
11014 11014 Unknown Unknown M184V V108I V21VI, D123E, Q174H, D177E, V179I, I195IL, T200TA, V245L, A272P, K277R, T286A, A288S, I293V, G335D, M357T, D364E, V365I, K366R, T377R, E399D, A400L  
11019 11019 Unknown Unknown   K20R, I135V, I142V, S162C, R211K, V245E, A272P, K277R, T286A, D324E, I329L, M357T, R358K, S379G  
11025 11025 Unknown Unknown   V35M, R83K, T139TA, K173E, A272S, I293V, F346Y, M357V, A376T, K390R, A400T  
11043 11043 Unknown Unknown   E6EAD, V35I, I135V, I178M, R211K, A272P, T286A, G333E, Q334C, E396D, A400T K11KPQT 
11074 11074 Unknown Unknown  L100I, K103N K32Q, V35VI, V60VI, I135R, G196E, T200TA, R211K, E248D, E291D, K311KR, M357T, K388R, A400T  
11086 11086 Unknown Unknown   K20R, A98S, I142M, T200AV, E203D, R211K, I293V, S322T, I329L, A376T, A400T  
11093 11093 Unknown Unknown   V35I, S68G, Q145E, R211K, V245VE, A272P, T286A, K311R, S322T, I329V, R356K, K366R, I380V, Q394HNPT, E399ED  
11113 11113 Unknown Unknown M184I K103N K20R, V35I, V60I, R83K, K122E, T200I, H221HL, E248D, E291D, M357V, A376S, K390R, A400T  
11118 11118 Unknown Unknown M184V K103N K49R, K101R, K122E, D123N, I135T, I142V, I178M, G196E, F214L, S251I, K277R, I293V, E297R, P313S, I329V, N348P, A360T, E399G  
11126 11126 Unknown Unknown  K103N S162C, K166R, D237DN, A272P, K277R, T286A, K311R, M357T, K366R, A400T  
11129 11129 Unknown Unknown   K122E, D123N, I142IT, S162C, K173T, D177E, G196E, A272P, K277R, V292I, I293V, E297K, K311R, S322A, G333E, G335S, A376AT, V381VI, T386TI, K390R, A400T  
11131 11131 Unknown Unknown  V108I, V179E K122P, T165I, E169D, T200E, A272P, K277R, T286TA, I293IV, E297K, A376T, A400T  
11143 11143 Unknown Unknown   A98S, K102Q, D123E, I135T, V276I, Q278H, K281R, I293V, E297K, T377M, S379A, V381I, K390R, A400T  
11146 11146 Unknown Unknown M41L, M184V, T215Y K101E, K103N K20R, D86E, S162C, R211K, H221Y, V245T, A272P, Q278H, T286P, I293V, E297K, K311R, D324E, I329L, Q334E, G335D, M357R, A400T D110DA 
11189 11189 Unknown Unknown   K122E, D123A, I135T, S162C, E169ED, G196E, T200TA, R211G, V245E, A272P, L283I, I293V, T296S, E297A, K311R, Q334E, M357T, K390R, A400T  
11203 11203 Unknown Unknown M41L, M184V, L210W, T215Y, N348I  K43Q, K173E, Q197E, T200A, Q207E, R211K, L228R, A272P, K281R, E297K, K311R, S322T, A355S, M357T, G359GS, K366R, A376T, A400T  
11239 11239 Unknown Unknown M184V K103N S162C, E169D, T200A, Q207E, R211K, V245E, V292I, I293V, E297A, V317A, S322T, R356K, G359T, T377L, K390R  
11243 11243 Unknown Unknown   I135V, S162SA, T200I, R211K, T286A, V292I, K311R, I329L, M357T, A376T  
11266 11266 Unknown Unknown   V35I, R83K, K122KQ, D123DE, R211K, T286A, I293V, P294A, Q334QL, M357T, K366KR, A400T  
11282 11282 Unknown Unknown   K20R, V35I, T69TA, I135T, I178M, G196E, I202IV, H208HY, F214L, P243T, V245E, A272P, I293V, E297R, V317VA, S322T, I329V, M357MT, A400T  
11283 11283 Unknown Unknown   V35I, K82KR, R83RK, A98AS, D123E, D177DE, I178IM, T200A, Q207A, R211K, A272P, K281R, E297K, S322T, I329IL, Q334QL, K385R, K390R, A400T  
11294 11294 Unknown Unknown   V35T, T39TA, K122E, S162C, D177E, T200A, Q207E, R211K, V245Q, K281R, L283LI, I293V, R358K, I375V, T377L, S379SC, K390KR  
11314 11314 Unknown Unknown M184V V108I, K238N, Y318YF K20R, A98S, D177E, I178V, T200A, F214L, V245M, A272P, K277R, A288G, G333E, Q334H, V372I, I393M, A400T  
11321 11321 Unknown Unknown M184V K103N V35M, R83K, K122E, I135IM, G196E, P243PS, A272P, E297A, D324E, K366R, A376T, A400T  
11337 11337 Unknown Unknown K65R Y181C, Y188H I135T, D177E, G196Q, R211K, H221Y, V245K, A272P, I274L, K275Q, K277R, I293V, E297A, M357R, K390R  
11351 11351 Unknown Unknown M184V K103N, P225H V35T, I135T, S162C, D177E, I178M, R211K, T286A, E297K, V317A, I326V, Q334L, M357T, A400T  
11384 11384 Unknown Unknown K70R, M184V  K122E, I135T, S162C, F214L, I293V, L301M, I329L, A400T  
11390 11390 Unknown Unknown T215S K103S D123E, S162A, D177E, R211K, V245M, A272P, K277R, L283I, I293V, E297K, K311R, G333E, R356K, A376T, A400T A267V 
11398 11398 Unknown Unknown  V179D V35I, K82R, R83K, K102Q, V118I, D123E, R211RK, F214L, V245K, E248D, A272P, K277R, T286A, E297KR, M357MV, K390R, A400T  
11399 11399 Unknown Unknown   V8I, D86E, V118I, D177E, T200I, R211K, F214L, V245M, A272P, K281R, E297K, I326T, I329V, Q334E, A400T  
11409 11409 Unknown Unknown M41L, M184V  D123E, K166R, I195T, T200A, V245K, D250E, A272P, K277R, K281R, T286A, A288S, I293V, E297K, E312A, F346C, R358K, K366R, A376S, T386I, A400T  
11426 11426 Unknown Unknown M184MV K103KN R83K, K122P, I135IL, D177E, T200A, R211K, P243PL, A272T, K277R, T286A, D324E, Q334E, G359GS, A371AV, S379G, T386IV, K390R, A400V  
11432 11432 Unknown Unknown   K122KN, D123AE, I142IV, D177E, V179VI, Q207E, V245EK, R284RK, T286TA, V292VI, I293IV, P294PT, K311KR, T377N, T386TI, K390KR, A400T  
11436 11436 Unknown Unknown   V60VI, A98S, I135V, I142IV, S162SACG, G196E, T200TAEK, Q207QKR, R211AEKT, V245M, A272P, K277R, T286A, I293IV, E297K, I326V, Q334D, A400T  
11451 11451 Unknown Unknown   D121DY, K122KE, Q174QH, I202IV, R211G, F214L, A272AP, I293V, V317A, D324E, Q334L, A376T, K390KR