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Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Deshpande (2009)
Title Phylogenetic analysis of HIV-1 reverse transcriptase sequences from 382 patients recruited in JJ Hospital of Mumbai, India, between 2002 and 2008.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
NumIsolates 383
NumPts 383
Subtype C, A, B, CRF06_cpx

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Page 1   from Isolate 1 to Isolate 100 from Total 383 Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
Pat284 in113rt None None   G15E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K166R, K173A, D177E, T200A, Q207G, R211RK, V245Q Q151R 
Pat285 in112rt None None   V35T, E36A, T39D, S48T, K49KR, V60I, K101R, D121Y, K122E, T165I, K173A, Q174K, D177E, T200A, Q207E, R211K, V245Q  
Pat286 in111rt None None   V35T, E36EA, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, T200A, E203ED, Q207E, R211K, V245Q, L246V  
Pat287 in110rt None None   V35T, E36A, T39D, S48T, V60I, D121CY, K122E, K173E, Q174R, D177E, I178L, T200A, Q207E, R211K, V245Q  
Pat288 in109rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K173A, D177E, T200A, Q207QK, R211KQ  
Pat289 in107rt None None   V35T, E36A, T39D, S48T, V60I, K122E, K173T, D177E, I178L, T200A, Q207E, R211K, V245Q  
Pat290 in106rt None None   V35T, E36A, T39D, E40D, S48T, K49R, V60I, D121Y, K122E, A158S, S162A, K166R, K173A, D177E, T200A, K201KR, Q207E, V245K K30KE 
Pat291 in105rt None None   V8I, V35T, T39D, S48ST, V60VI, K102KQ, D121HY, K122E, I135T, S162CG, S163ST, T165TI, K173AT, Q174R, D177G, T200A, Q207E, R211K, V245Q  
Pat292 in104rt None None   V35T, T39E, S48T, V60I, D121Y, K122E, I135K, K173A, Q174R, D177E, T200A, Q207E, V245Q E6V 
Pat293 in103rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, D123E, I135R, S162H, K173A, D177E, I178IM, T200AV, Q207G, R211G, V245Q  
Pat294 in102rt None None   V35IT, E36A, T39D, S48T, V60I, K101R, D121Y, K122E, K166R, K173A, D177E, T200A, Q207E, R211K, V245Q  
Pat295 in101rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K173AV, D177E, T200A, Q207E, L210LS, R211RK, V245Q  
Pat296 in100rt None None   D17N, V35T, E36EA, T39D, S48T, V60I, K122E, D123DG, I135T, S162H, K173A, D177E, T200A, Q207N, V245Q, D250E E6V 
Pat297 in99rt None None   I5M, K20R, V35IT, E36A, T39D, S48T, V60I, D121Y, K122E, I135K, S162A, K173A, D177E, T200A, Q207E, V245Q, L246P P157PA 
Pat298 in98rt None None   V35T, E36A, T39D, S48T, K49KR, V60I, D121Y, K122E, I135IV, I159V, K166R, K173A, D177E, T200A, Q207E, V245Q  
Pat299 in96rt None None   V35T, E36A, T39E, S48T, V60I, K102R, K166R, K173A, D177E, T200A, Q207E, R211K, V245Q  
Pat300 in95rt None None   V35T, E36A, T39D, S48T, V60I, I135A, K166R, K173A, D177E, T200A, Q207N, V245Q  
Pat301 in94rt None None   V35T, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, Q197K, T200A, Q207E, R211RK, V245Q E248R 
Pat302 in93rt None None   T27S, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, D123G, I135R, S162A, K166R, K173A, D177E, T200A, I202IV, Q207G, R211RK, V245Q  
Pat303 in92rt None None  V108VI V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135IT, A158S, S162A, K173A, Q174K, D177E, T200A, Q207E, V245Q L246R, W252R 
Pat304 in91rt None None   V35T, T39N, V60I, K102E, D121Y, K122E, I135R, S162H, K173E, D177E, I178M, T200A, E204K, Q207G, R211K  
Pat305 in90rt None None   V35T, E36A, T39D, S48T, V60I, D121DY, K122KE, K173A, D177E, T200A, E204D, Q207A, V245Q  
Pat306 in89rt None None   V35R, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K166R, K173T, D177G, T200A, Q207E, V245Q  
Pat307 in88rt None None   V35T, E36A, T39E, S48T, K122E, D123S, K166R, K173A, D177E, T200A, Q207G, R211K V10E, D186DE 
Pat308 in87rt None None T215TS  V35T, T39E, S48T, V60I, D121Y, K122E, D123DE, I135R, K173A, D177E, T200TA, Q207K, R211K, T216TP  
Pat309 in85rt None None   K32E, V35K, E36A, T39D, S48T, V60I, D121Y, K122E, I135K, S162A, K173A, D177E, T200A, Q207E, V245Q  
Pat310 in84rt None None   V35T, T39D, S48T, V60I, D121Y, K122E, K173A, D177E, T200A, Q207E, V245Q  
Pat311 in83rt None None   V35T, E36A, T39D, S48T, V60I, D121H, K122E, K173T, D177E, I178L, T200A, Q207G, R211K, V245Q  
Pat312 in82rt None None   V35T, E36EA, T39D, S48T, V60I, D121Y, K122E, I135IV, S162A, K173A, D177E, I178IV, T200A, Q207E, V245Q P25A 
Pat313 in81rt None None   K11T, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173AT, D177E, T200A, Q207E, R211RK  
Pat314 in80rt None None   V35T, E36EA, T39E, S48T, V60I, D121DH, K122E, D123DG, I135K, K173A, D177E, T200A, Q207G, R211K  
Pat315 in79rt None None  K103S V35T, E36A, T39E, S48T, V60I, K102R, K104R, D121Y, K122E, K173A, D177E, T200A, Q207G, R211K  
Pat316 in78rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, T200A, Q207D, R211K, V245Q  
Pat317 in77rt None None   E6D, V35T, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173AT, D177E, T200A, R211K  
Pat318 in76rt None None   V35T, E36A, T39D, S48T, K49KR, V60I, D121Y, K122E, I135T, S162A, T165I, K173AT, D177E, E194K, G196E, T200A, Q207E, V245Q  
Pat319 in75rt None None   V35T, E36A, T39D, S48T, V60I, K104N, D121Y, K122E, I135T, S162A, K166R, K173A, D177E, T200A, Q207E, D237N  
Pat320 in74rt None None   P14L, V35T, T39E, S48T, V90VI, S105A, K122E, D123S, I135IV, K166R, K173A, D177E, T200A, Q207A, R211RK  
Pat321 in73rt None None   T27S, V35T, E36EA, T39D, S48T, V60I, D121Y, K122E, I135V, I159V, K173A, D177E, T200A, Q207E, R211RK, V245H  
Pat322 in71rt None None   I5M, K11N, V35T, E36EA, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K173A, D177E, T200A, Q207E, V245Q Q91QR 
Pat323 in70rt None None   V21I, V35T, T39N, S48T, V60I, D123E, S162Y, K173A, Q174R, D177E, Q207E, R211K, V245E, K249Q  
Pat324 in69rt None None   V21I, V35T, T39N, S48T, V60I, D123E, S162Y, K173A, Q174R, D177E, E203EG, Q207E, R211K, V245D, K249Q  
Pat325 in68rt None None   T27S, V35T, E36A, T39D, S48T, V60I, D86E, D121Y, K122E, S162A, K173A, Q174K, D177E, T200A, Q207E, V245Q  
Pat326 in67rt None None   T27S, V35T, E36A, T39D, S48T, V60I, D86E, D121Y, K122E, S162A, K166R, K173A, D177E, T200A, Q207E, P243A, V245Q  
Pat327 in66rt None None M184V  V35T, E36A, T39D, S48T, V60I, D121H, K122E, I135T, S162C, K173A, D177E, T200A, Q207E, V245Q  
Pat328 in65rt None None   V35T, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K166KR, K173A, D177E, T200A, Q207E, V245Q  
Pat329 in64rt None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135V, A158S, K166R, K173A, D177E, Q197K, T200A, Q207E, R211K  
Pat330 in63rt None None   V35T, E36A, T39D, S48T, V60I, K122A, I135T, S162Y, K173T, Q174K, D177EG, T200A, Q207E  
Pat331 in62rt None None   V35T, E36A, T39D, S48T, V60I, K122A, I135T, S162Y, K173T, Q174K, D177E, T200A, Q207E  
Pat332 in61rt None None   V35T, E36A, T39D, S48T, E53D, V60I, D123N, I142V, T165I, K166R, K173A, Q174R, D177E, I178L, T200A, Q207E, R211K, F214L, V245Q  
Pat333 in59rt None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135T, I142V, S162A, K173A, Q174R, D177E, T200A, Q207E, R211K, V245Q  
Pat334 in58rt None None   V35MT, E36A, T39D, S48T, V60I, D121Y, K122E, K166R, K173A, D177E, T200A, Q207E  
Pat335 in57rt None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135K, S162N, K166R, K173A, Q174R, D177E, T200A, Q207E, V245R, K249Q  
Pat336 in56rt None None   V21VI, K32KT, V35K, E36A, T39D, E42EK, S48T, V60I, D121Y, K122E, S162A, E169EQ, K173A, Q174R, D177E, I178M, T200A, Q207K, R211Q, K238R, V245Q  
Pat337 in55rt None None   V35T, T39K, K122E, D123T, I135IT, S162A, K173I, Q174K, D177E, I195IT, Q207D, K238R F116FI 
Pat338 in54rt None None  V179VD V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135IV, K166R, K173A, T200A, I202IV, Q207E, R211K  
Pat339 in53rt None None   D17N, V35T, E36A, T39A, S48T, V60I, D121Y, K122E, I135M, T139A, S162H, K173A, D177E, T200A, Q207T, V245Q S3G 
Pat340 in52rt None None   V35T, E36A, T39D, E40EG, S48T, V60I, K102E, K122E, I135R, S162A, K166R, K173A, D177E, T200A, Q207E, V245Q  
Pat341 in51rt None None   V35M, E36A, T39D, S48T, V60I, D121Y, K122E, A158S, K173A, D177E, T200A, Q207E  
Pat342 in50rt None None   V35T, E36A, T39A, S48T, V60I, D121CY, K122E, I135M, T139A, S162H, K173A, D177E, T200A, Q207T, V245P  
Pat343 in49rt None None   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, I135K, S162A, K173A, D177E, T200A, Q207E, R211K, V245Q  
Pat344 in48rt None None   V35T, E36A, T39E, S48T, S68SI, K122E, D123S, I135T, K166R, K173A, D177E, T200A, Q207E, R211K, V245Q  
Pat345 in47rt None None   V21I, V35T, E36A, T39E, S48T, V60I, I135T, K166R, K173A, D177E, T200A, Q207E, R211K, V245Q K30KE 
Pat346 in45rt None None   V35T, E36A, T39D, S48T, D121HY, K122E, D123E, S162C, K173A, Q174R, D177E, I178L, T200A, Q207E, R211K, V245Q  
Pat347 in44rt None None   V35T, T39D, S48T, V60I, D121Y, K122E, I135R, S162A, K173A, D177E, T200A, Q207G, R211EK, V245Q  
Pat348 in43rt None None   T27S, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162A, K166R, K173A, D177E, I178M, T200A, Q207G  
Pat349 in42rt None None   V35T, E36A, T39D, S48T, V60I, T107S, D121Y, K122E, D123E, I135T, T139A, S162A, K173A, Q174K, T200A, Q207AE, V245Q, D256E  
Pat350 in41rt None None   K11E, V35T, V60I, D121H, K122E, D123S, I135T, K173S, Q174K, D177E, V179I, Q197K, T200A, E203D, Q207A, R211S, V245S, D250G  
Pat351 in40rt None None   V35T, E36A, T39D, K43KE, S48T, V60I, K122E, D123S, I135V, S162A, K173A, Q174R, D177E, I178L, T200A, Q207E, V245Q  
Pat352 in39rt None None   V35M, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K173A, D177E, T200A, Q207E, E224G, V245Q R72K, Q85QP, Q182QP 
Pat353 in38rt None None   T27S, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162A, K166R, K173A, D177E, T200A, Q207EG, R211K, V245Q  
Pat354 in37rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K173A, D177E, T200A, Q207G, R211K, V245Q  
Pat355 in36rt None None   V35T, E36A, T39D, S48T, V60I, K122E, K166R, K173V, D177E, T200S, Q207A, V245Q E29EG 
Pat356 in34rt None None   V35T, E36A, T39D, S48T, V60I, K101Q, D121Y, K122E, I135IR, A158AS, S162A, T165TI, K173A, D177E, T200A, Q207G  
Pat357 in33rt None None   V35T, E36EA, T39E, E40EK, S48T, V60I, K104R, D121Y, K122E, I142V, K166R, K173A, D177E, T200A, Q207V, R211K, V245Q  
Pat358 in31rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135M, T139TA, K166R, K173A, Q174R, D177E, I178M, V179VI, I195IL, T200A, Q207E, L228LH  
Pat359 in30rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K166R, K173A, D177E, T200A, Q207A, R211K, V245Q  
Pat360 in28rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K173A, Q174R, D177E, T200A, Q207E, R211K, V245Q  
Pat361 in27rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135T, S162A, K173A, Q174R, D177E, T200A, Q207E, V245Q W252R 
Pat362 in26rt None None   V35T, T39E, S48T, V60I, K101R, D121Y, K122E, I135IT, K166R, F171Y, K173A, D177E, T200A, Q207G, R211K, F214L  
Pat363 in24rt None None   V35T, E36A, T39E, S48T, V60I, K102R, K122E, D123S, I135T, K166R, K173A, D177E, Q197H, T200A, Q207E, R211K, V245Q, E248T, K249R, D250N  
Pat364 in23rt None None   T27S, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K173A, I178L, T200A, Q207N, R211K, V245Q  
Pat365 in22rt None None   V35T, E36A, T39E, E40D, S48T, V60I, D121Y, K122E, I135T, S162A, K173T, D177E, T200A, Q207E, R211K V8D, D76DN 
Pat366 in21rt None None   V35T, E36A, T39E, S48T, K122E, D123S, I135IT, K166R, K173AT, D177E, T200A, Q207E, R211K, V245Q  
Pat367 in19rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162T, T165I, D177E, T200A, Q207E, V245Q K30KE 
Pat368 in17rt None None   V35T, T39D, S48T, V60I, K103E, D121Y, K122E, I135R, S162G, K173A, Q174R, D177E, T200A, Q207E, V245Q E29R, K30G 
Pat369 in16rt None None   I31IT, V35P, E36KT, T39D, V60I, E79ED, D121Y, K122E, I135T, S162A, K173A, D177E, T200A, Q207G, R211K, V245Q K30E, Q91P 
Pat370 in15rt None None   V35T, T39N, S48T, K49KR, V60I, D121Y, K122E, I135R, S162A, K173T, D177E, T200A, E204ED, Q207DEG, R211RK, V245Q  
Pat371 in14rt None None   V35T, E36A, T39E, S48T, K101Q, D121H, K122E, D123E, I135T, S162C, K173A, D177E, I178V, T200A, Q207E, R211K, V245Q, L246V  
Pat372 in13rt None None   V35T, E36A, T39E, S48T, K122E, D123S, I135IT, K166R, K173AT, D177E, T200A, Q207E, R211K  
Pat373 in12rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162A, K173A, P176Q, D177E, T200A, Q207K, V245T  
Pat374 in11rt None None   V35T, E36A, T39D, V60I, D121Y, K122E, S162A, K166KR, K173A, D177E, T200A, Q207E, V245Q K30E, S48Y 
Pat375 in10rt None None   K32KQ, V35K, E36A, T39D, S48T, K49R, V60I, D121Y, K122E, I135M, S162Y, K166KR, K173A, Q174R, N175Y, D177E, E194D, T200V, K201R, Q207E, R211K, V245H  
Pat376 in9rt None None   V35K, E36A, T39D, S48T, V60I, D121Y, K122E, S162Y, K166R, K173A, D177E, T200V, Q207QK, R211K, V245E  
Pat377 in8rt None None   V35T, E36A, T39E, E40D, S48T, V60I, D121Y, K122E, I135T, S162A, K173T, D177E, T200A, Q207E, R211K K30E 
Pat378 in7rt None None   K20R, V35IT, E36A, T39D, S48T, V60I, D121Y, K122E, I135K, S162A, K173A, D177E, T200A, Q207E, V245Q P157A 
Pat379 in5rt None None   V35T, E36A, T39D, K46KN, S48T, K49KR, V60I, D121Y, K122E, I135T, S162A, K173A, Q174R, D177E, T200A, Q207E, R211K, V245Q N147Y 
Pat380 in4rt None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I135R, K173A, D177E, T200A, Q207E, R211K K49KN 
Pat381 in3rt None None   V35T, E36A, T39D, E40D, S48T, V60I, D121Y, K122E, I135T, S162A, K173T, D177E, T200A, Q207E, R211K, V245H  
Pat382 in2rt None None   V35T, E36A, T39D, S48T, V60I, K166R, K173A, Q174R, D177E, T200E, Q207E, V245Q L149P, Q161P, L205I 
Pat383 in1rt None None   V35T, E36A, T39D, S48T, V60I, E79D, D86E, D121Y, K122E, I135T, S162G, K166R, K173A, D177E, G196K, T200A, Q207G, R211K, V245Q  

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