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Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Lakhashe (2008)
Title Characterization of B/C recombinants of near full-length HIV type 1 from northeastern India with mosaics identical to ARE195FL but with a different ancestral origin.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
NumIsolates 6
NumPts 6
Subtype C, B

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
11807 11807
Consensus 		Unknown Unknown   K201I, F214L, I293V, A376T, K390R, A400T, R461K, H483Y, L517V, Q547K, A554T V276A 
  clone: 1 Unknown Unknown   K201I, F214L, I293V, A376T, K390R, A400T, R461K, H483Y, L517V, Q547K, A554T V276A 
218436 INDNARI-0218436
Consensus 		Unknown Unknown   K11R, V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173A, Q174R, D177E, T200A, Q207D, R211K, V245E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, G335D, E344V, R356K, G359T, T377M, A400T, E404D, E432D, V435A, L452I, Q464K, D471E, H483Y, L484I, L491S, S519N, K530R, A534S, A554S  
  clone: 1  Unknown Unknown   K11R, V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173A, Q174R, D177E, T200A, Q207D, R211K, V245E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, G335D, E344V, R356K, G359T, T377M, A400T, E404D, E432D, V435A, N447X, L452I, G453X, T459A, Q464K, D471E, T472X, H483Y, L484I, L491S, S519T, E523D, Q524H, K530G, A534S, A554S  
  clone: 2 Unknown Unknown   K11R, V35T, E36A, T39D, K43E, S48T, E53D, V60I, K66R, D121Y, K122E, S162A, K173A, Q174R, D177E, T200A, Q207D, R211K, V245E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, G335D, E344V, R356K, G359T, T377M, A400T, E404D, E432D, V435A, L452I, Q464K, D471E, H483Y, L484I, L491S, L517I, S519N, K530R, A534S, A554S I270T 
  clone: 3 Unknown Unknown   K11R, I31M, V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173A, Q174R, D177E, D192N, T200A, Q207D, R211K, V245E, A272P, K277R, T286A, E291D, V292I, I293V, P294Q, V317A, G335D, E344V, R356K, G359T, T377M, A400T, E404D, E432D, V435A, L452I, Q464K, D471E, H483Y, L484I, L491S, S519N, K530R, A534S, A554S  
218437 INDNARI-0218437
Consensus 		Unknown Unknown  K103N V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162C, F171Y, K173A, Q174R, I178L, T200A, R211Q, L228Q, V245Q, K249R, D250E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, Q334F, G335D, R356K, G359A, T377M, K390R, A400T, E404D, E432D, V435A, Q464K, V466I, T470N, D471E, H483C, L484I, L491P, S519N, K530R, A534S, A554N, K558R  
  clone: 1 Unknown Unknown  K103N, G190R V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162C, F171Y, K173A, Q174R, I178L, T200A, R211Q, L228Q, V245Q, K249R, D250E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, Q334F, G335D, R356K, G359A, T377M, K390R, A400T, E404D, E432D, V435A, Q464K, V466I, T470N, D471E, H483C, L484I, L491P, S519N, K530R, A534S, A554N, K558R  
  clone: 2 Unknown Unknown  K103N V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162C, F171Y, K173A, Q174R, I178L, T200A, E204G, R211Q, L228Q, V245Q, K249R, D250E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, Q334F, G335D, R356K, G359A, K366R, T377M, K390R, A400T, E404D, E432D, V435A, Q464K, V466I, T470N, D471E, H483C, L484I, L491P, S519N, E523D, Q524H, K530R, A534S, A554N, K558R N545K 
  clone: 3 Unknown Unknown   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, S162C, F171Y, K173A, Q174R, I178L, E194G, T200A, R211Q, L228Q, V245Q, K249R, D250E, A272P, K277R, T286A, E291D, V292I, I293V, V317A, Q334F, G335D, R356K, G359A, T377M, K390R, A400T, E404D, E432D, V435A, Q464K, V466I, T470N, D471E, H483C, L484I, L491P, S519N, K530R, V531A, A534S, A554N, K558R  
218440 INDNARI-0218440
Consensus 		Unknown Unknown   K11Q, V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173A, Q174R, D177E, T200A, I202V, Q207E, R211K, V245E, A272P, E291D, V292I, I293V, V317A, G335D, P345Q, R356K, G359T, T377M, A400T, E404D, E432D, V435A, L452I, Q464K, T470N, D471E, Q480R, H483C, L484I, L491S, E514V, S519N, Q524E, K530R, A534S, A554S  
  clone: 1 Unknown Unknown   K11Q, V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173A, Q174R, D177E, T200A, I202V, Q207E, R211K, V245E, A272P, E291D, V292I, I293V, V317A, G335D, P345Q, K353E, R356K, G359T, T377M, A400T, E404D, E432D, V435A, L452I, Q464K, T470N, D471E, Q480R, H483C, L484I, L491S, T497P, A508X, E514X, S519T, Q520N, Q524R, L525I, K530R, A534S, A554S S513V 
  clone: 2 Unknown Unknown   K11Q, V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173A, Q174R, D177E, T200A, I202V, Q207E, V245E, A272P, E291D, V292I, I293V, V317A, G335D, P345Q, R356K, G359T, T377M, A400T, W401*, E404D, E432D, I434V, V435A, L452I, Q464K, T470N, D471E, Q480R, H483C, L484I, L491S, S519N, Q524E, K530R, A534S, A554S F77C, W239R, Q500R 
  clone: 3 Unknown Unknown   E6X, K11Q, V35T, E36A, T39D, S48T, E53D, V60I, R83G, D121Y, K122E, S162A, K173A, Q174R, D177E, V189I, T200A, I202V, Q207E, R211K, V245E, A272P, E291D, V292I, I293V, V317A, Q330R, G335D, P345Q, R356K, G359T, T377M, A400T, E404D, E432D, V435A, L452I, Q464K, T470N, D471E, Q480R, H483C, L484I, L491S, E514V, S519N, Q524E, K530R, A534S, A554S  
VB39 VB39
Consensus 		Unknown Unknown   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K166R, K173A, D177E, T200A, Q207G, R211K, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V, K311R, D324E, G335D, R356K, G359T, T377M, K390R, A400T, E404D, N447S, E449D, L452I, V466I, T470N, D471E, H483Y, L491S, S519N, K530R, A534S, A554Q N147S 
  clone: 1 Unknown Unknown   V35T, E36A, T39D, S48T, V60I, S68G, D121Y, K122E, K166R, K173A, D177E, T200A, Q207K, R211K, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V, G335D, R356K, G359T, T377I, K390R, A400T, E404D, N447S, E449D, L452I, V466I, D471E, H483Y, L491S, S519N, K530R, A534S, A554Q L279P, L551S 
  clone: 2 Unknown Unknown   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, K166R, K173A, D177E, T200A, Q207G, R211K, V245Q, A272P, K277R, K281R, T286A, E291D, V292I, I293V, K311R, D324E, G335D, R356K, G359T, T377M, K390R, A400T, E404D, N447S, E449D, L452I, V466I, T470N, D471E, H483Y, L491S, S519N, K530R, A534S, A554Q N147S 
VB49 VB49
Consensus 		Unknown Unknown   V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173T, Q174K, D177E, T200A, Q207E, V245Q, A272P, K281R, E291D, V292I, I293V, R356K, G359T, T377M, K390R, E404D, Q428R, K431T, V435A, N447S, L452T, V466I, D471E, H483Y, L491S, S519N, K527N, K530R, V531I, A534S, A554S  
  clone: 1 Unknown Unknown L74S  V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173T, Q174K, D177E, T200A, Q207E, R211K, V245Q, A272P, K281R, E291D, V292I, I293V, R356K, G359T, T377M, K390R, E404D, Q428R, K431T, V435A, N447S, L452T, V466I, D471E, H483Y, L491S, S519N, K527N, A534S, A554S W88R, I257K 
  clone: 2 Unknown Unknown   V35T, E36A, T39D, S48T, E53D, V60I, D121Y, K122E, S162A, K173T, Q174K, D177E, T200A, Q207E, V245Q, A272P, K281R, E291D, V292I, I293V, A355X, R356K, G359T, T377M, K385R, K390R, E404D, Q428R, K431T, V435A, N447S, L452T, V466I, D471E, H483Y, L491S, S519N, K527N, K530R, V531I, A534S, A554S T58A, W88L, I309T 
  clone: 3 Unknown Unknown   V35T, E36A, T39D, S48T, E53D, V60I, T69A, D121Y, K122E, S162A, K173T, Q174K, D177E, T200A, Q207E, V245Q, A272P, K281R, E291D, V292I, I293V, R356K, G359T, T377M, K390R, E404D, Q428R, K431T, V435A, N447S, L452T, V466I, V467I, D471E, H483Y, L491S, S519N, K527N, K530R, V531I, A534S, A554S  

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