Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Papathanasopoulos (2010)
Title Characterization of HIV type 1 genetic diversity among South African participants enrolled in the AIDS vaccine integrated project (AVIP) study.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 32
NumPts 32
Subtype C, A

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
14998 06ZA14998 None    V31I, M50I, I72IV, Y99F, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, K211R, L234I, A265V, R269K, D278A, S283D  
15141 06ZA15141 None    D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136HQ, K188R, V201I, Y227F, L234I, A265V, R269RK, D278A, S283G  
16642 06ZA16642 None    K14R, S17T, I72IV, L101I, T112V, T124N, T125A, K136Q, V201I, I208L, T218I, L234I, A265V, D278A, S283G, R284RG, D288N  
16853 06ZA16853 None    D25E, V31I, M50MI, I72V, L101I, T112V, T124A, T125TA, K136Q, V201I, T218I, L234I, R269K, D278A, S283G, R284G  
16923 06ZA16923 None    D25E, M50MI, I72V, P90S, F100Y, L101I, T112V, T124A, T125A, K136Q, I141IT, A169AT, V201I, T218I, L234I, R269K, D278A, S283G V165VA, R166REGK 
16938 06ZA16938 None   V151I E10D, K34KR, M50T, I72IV, T112V, T124N, K136Q, K188R, S195C, V201I, L234I, D278A, S283G  
16976 06ZA16976 None   G163GR D25E, V31I, I72V, F100Y, L101I, T112V, T124A, Q164QK, R166RK, A169AT, K188R, V201I, K211KR, T218IK, L234I, K264R, D278A, S283G V165VA 
16985 06ZA16985 None  Q148H  S24N, D25E, V31I, M50I, I60V, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, K160N, V201I, Q221T, L234V, R269K, D278A, S283G  
16997 06ZA16997 None    D25E, V31I, M50R, I72V, I84IM, P90PS, F100Y, L101I, T112V, T124A, T125A, K136Q, K160KT, K188KR, V201I, T218I, L234I, A265V, R269K, D278A, S283G K14IM, Y15DN 
17058 06ZA17058 None    S17SN, D25E, V31I, M50MI, I72V, P90PS, F100W, L101I, G106GA, T112V, T124A, T125A, K136Q, I141V, V201I, T218I, L234I, D278A, S283G  
17067 06ZA17067 None    D25E, K34KR, M50MI, F100Y, L101I, T112V, T124TA, T125A, K136Q, V201I, T218I, L234I, A265V, D278A, S283G  
17071 06ZA17071 None    S24SN, D25E, N27G, V31VI, M50MI, I72IV, P90T, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218L, K219Q, L234I, D278A, S283G L45LEQV 
17188 07ZA17188 None   S230SR D6E, S17N, D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, R166RK, A169AT, I182IV, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
17193 07ZA17193 None    V31I, L45Q, M50I, I72V, I84IM, P90T, L101I, T112V, T124N, T125A, K136Q, V201I, Q216R, T218I, K219Q, L234I, A265V, D278A, S283G  
17200 07ZA17200 None    K14R, D25E, V31I, L45Q, L63LI, I72V, L74I, E96D, L101I, K111KR, T112V, I113IL, T124A, T125A, K136Q, V201I, Q216R, T218I, K219Q, L234I, R269K, D278A, S283G, R284G, D288N  
17212 07ZA17212 None    D25E, V31I, M50T, I72V, I84M, L101I, T112V, T124N, T125A, I135L, K136Q, F181L, K188R, V201I, T218I, L234I, A265V, R269RK, D278A, S283G  
17241 07ZA17241 None    E11D, D25E, V31I, L45V, M50I, F100FY, L101I, T112V, S119P, T124A, T125A, K136Q, K156N, G163GV, V201I, L234I, A265V, R269K, D278A, S283G  
17332 07ZA17332 None   Y143YF E11D, D25E, V31I, I72V, L101I, T112R, T125V, K136Q, V201I, L234I, D256E, R269K, D278A, S283G, R284G  
17409 07ZA17409 None    D25E, V31I, M50MI, I72V, P90PS, T112V, T124N, T125A, I135V, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G, R284G, D286N  
17462 07ZA17462 None    E10D, D25E, V31I, M50T, I84M, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, D278A, S283G A265G 
17491 07ZA17491 None    E10A, S17N, D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, I182V, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
17503 07ZA17503 None    M50MI, L101I, T112V, T124A, I135IV, K136HQ, F181L, K188R, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G  
17556 07ZA17556 None    K14R, S24N, D25E, V31I, M50I, I60V, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, I220V, L234I, A265V, R269K, D278A, S283G  
17568 07ZA17568 None    K14R, D25E, V31I, L45LI, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G  
17579 07ZA17579 None   G163R D25E, V31VI, M50I, I72V, I89L, F100Y, L101I, K111R, T112V, T124A, T125A, K136Q, K156N, D167E, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G A179AG 
17604 07ZA17604 None    Q9H, S17N, V31I, M50I, I72V, I84M, P90S, F100Y, L101I, T112V, T124G, T125A, K136Q, D167E, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283DG, R284RG, D286N  
17657 07ZA17657 None    E10D, S39N, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, F139Y, D167E, V201I, K219N, N222K, L234V  
17699 07ZA17699 None    E11D, K14KR, S24N, D25E, V31I, I72V, L101I, T112V, T124A, K136Q, V201I, K211R, L234I, A265V, R269K, D278A, S283G S195R 
17716 07ZA17716 None    D25E, V31I, M50I, I60V, F100Y, L101I, T112V, T125A, K136Q, V165I, R166K, A169AT, H171Q, K188R, Y194C, V201I, K211R, T218I, L234I, A265V, D278A, S283G  
17854 07ZA17854 None    E10D, D25E, I84M, L101I, T112V, T124A, K136Q, V201I, T218I, L234I, A265V, D278A, S283G  
17872 07ZA17872 None    E11D, S24N, D25E, V31I, M50T, F100Y, L101I, T112V, T124TA, T125A, K136Q, V201I, Q216QR, T218I, N222NH, L234I, A265V, D278A, S283G  
17898 07ZA17898 None    E10D, D25E, V31I, L45Q, I72V, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218I, L234I, R269K, D278A