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References

Author Passaes (2009)
Title Lack of primary mutations associated with integrase inhibitors among HIV-1 subtypes B, C, and F circulating in Brazil.
Citation JAIDS
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
NumIsolates 105
NumPts 105
Subtype C, B, F

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Page 1   from Isolate 1 to Isolate 100 from Total 105 Clinical IN Isolates

SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
BR.RJ.FT12 BR.RJ.FT12 None    S17N, V32I, K42R, I72V, L101I, S119P, T124A, T125A, K136Q, V165I, V201I, K211R, T218I, L234V, D256E  
BR.RJ.FT14 BR.RJ.FT14 None   E138D D6N, E13D, V32I, K42R, L101I, T124N, T206S, D229E R284G 
BR.RJ.FT15 BR.RJ.FT15 None    K14R, S17N, L28IM, V31VI, V32I, L101I, K111R, T112I, T124A, K136Q, V165I, V201I, A205AS, K211R, T218I, L234V, D256E S283G 
BR.RJ.FT16 BR.RJ.FT16 None    E10D, L28I, S39C, I72IV, L101I, T124N, T125A, I135V, K156N, V176L, S230N  
BR.RJ.FT24 BR.RJ.FT24 None    E10G, S17N, F26V, M50I, I113V, T124A, T125A, G163E, D232E, D256E  
BR.RJ.FT25 BR.RJ.FT25 None   V151I E11D, I72V, L101I, G163N  
BR.RJ.FT35 BR.RJ.FT35 None    D6N, K7E, E11D, K14R, Q216H, D256E, G277C  
BR.RJ.FT36 BR.RJ.FT36 None    E10D, I60M, M154I, D167E, N254S, S255G V281M 
BR.RJ.FT40 BR.RJ.FT40 None    E11D, M50R, V79A, L101I, S119G, T122I, T125A, K160KN, G193E, V201I, L234I  
BR.RJ.FT41 BR.RJ.FT41 None    D6T, K7E, E10D, K14R, L28I, S39C, I84M, L101I, T124N, T125A, V126M, V201I, I268L, G277C  
BR.RJ.FT42 BR.RJ.FT42 None    S17N, S24N, L45I, I72V, F100Y, L101I, S119P, T124A, T125A, K136Q, V165I, V201I, T218I, L234V, D256E S283G 
BR.RJ.FT46 BR.RJ.FT46 None    K7R, E11D, V31I, I72V, L101V, M154L, T206S  
BR.RJ.FT5 BR.RJ.FT5 None    D6N, K7V, V31I, V32I, M50I, I72V, T112A, T125A, K211R, D232E  
BR.RJ.FT50 BR.RJ.FT50 None    D6T, E10D, E13D, I72V, S119G, T122I, T124A, T125A  
BR.RJ.FT51 BR.RJ.FT51 None    E11D, M50I, L101I, I113L, S119T, T124A, I200M, V201I, K211T, E212H, Q216H, V249L  
BR.RJ.FT53 BR.RJ.FT53 None   V151I A23V, I72V, L101I, S119G, T122I, V201I  
BR.RJ.FT54 BR.RJ.FT54 None    E11D, R20K, L45Q, I72V, I113V, V201I, T206S, D256E, M275MV  
BR.RJ.FT56 BR.RJ.FT56 None   V151I E11D, S24N, V31I, I72V, V201I, T206S, T218I, D256E  
BR.RJ.FT58 BR.RJ.FT58 None    D6E, E11D, A23V, S24G, V31I, V32I, M50T, I72V, L101I, S119P, T122I, E212A, Q216H  
BR.RJ.FT59 BR.RJ.FT59 None    K7R, K14R, V31I, I72V, L101I, K111Q, T112V, T124A, T125A, G163Q, D167E, V201I, A205S, T206S, D207E, T218S  
BR.RJ.FT6 BR.RJ.FT6 None    E11D, A23V, S24G, V31I, V32I, I72V, T124N, V201I, L234I, D253E  
BR.RJ.FT60 BR.RJ.FT60 None    S17N, L63I, I72V, I84L, L101I, T112I, S119P, T122I, T124A, T125P, K136Q, G163T, V201I, A205S, T218I, N222T, L234V, D256E N254I, I268F, D270V, Q274H, S283G, R284T, Q285R 
BR.RJ.FT66 BR.RJ.FT66 None   V151L L28I, I72V, D167E S123A, K159N, I162Y, V281M, S283G 
BR.RJ.FT86 BR.RJ.FT86 None    S17N, L101I, S119T, T124A, T125A, K136Q, I191M, V201I, K211R, T218I, L234V, D256E S283G, D286N 
BR.RJ.FT90 BR.RJ.FT90 None    S17N, V31I, I84L, L101I, S119T, T124A, T125A, K136Q, V201I, A205S, T206S, T218I, L234V, D256E S283G 
BR.RJ.FT99 BR.RJ.FT99 None   G163K S17N, R20K, I72V, I84L, P90S, L101I, K111R, S119T, T124A, T125A, K136Q, V201I, A205S, I208L, K211R, T218I, L234V, D256E S283G 
BR.RJ.RJ21 BR.RJ.RJ21 None    S17N, V31I, L45V, L101I, S119T, K136Q, V165I, V201I, A205S, K211R, T218I, L234V, D256E S283G 
BR.RJ.SB105 BR.RJ.SB105 None    E10D, V31I, I72V, K156N, Q216H, S230N, D232E  
BR.RJ.SB106 BR.RJ.SB106 None   G163R I72V, I84L, P90S, L101I, S119T, T124A, T125A, K136Q, K156N, V201I, A205S, T218I, L234V, D256E H16P, S230SC, V281R, S283SG 
BR.RJ.SB114 BR.RJ.SB114 None    E11D, S17N, I84L, L101I, S119T, T124A, T125A, K136Q, V165I, V201I, A205S, T218I, L234V, D256E S283G 
BR.RJ.SB120 BR.RJ.SB120 None    E11D, K14R, N18Y, V32I, I72V, I84L, L101I, S119T, T124A, T125A, K136Q, V165I, V201I, T218I, L234V, D256E S283G 
BR.RJ.SB135 BR.RJ.SB135 None    K14R, S17N, L101I, T112I, S119P, T124A, T125A, I135V, K136Q, V165I, V201I, A205S, K211R, T218I, L234V, D256E S283G 
BR.RJ.SB137 BR.RJ.SB137 None    E11D, S17N, V31I, M50I, I72V, I84L, I113V, S119T, T124A, T125A, K136Q, V165I, V201I, K211R, T218I, L234V, D256E  
BR.RJ.SB159 BR.RJ.SB159 None    S17N, V31I, I72V, I84L, L101I, T112I, S119T, K136Q, V201I, L234V, D256E S283G 
BR.RJ.SB160 BR.RJ.SB160 None   V151I E11D, V31I, K111T, I113V, S119G, T122I, T124N, T125A, V126M, E157Q, K160Q, V260I  
BR.RJ.SB163 BR.RJ.SB163 None    E11D, S24N, V32I, K111R, V201I S283G 
BR.RJ.SB166 BR.RJ.SB166 None    E11D, K14R, K71R, L101I, G163E, K173R, E198D, V201I, G277C I182F, C280R, V281G 
BR.RJ.SB167 BR.RJ.SB167 None   L68V E11D, S17N, I72T, V79VA, I84L, E96D, L101I, S119P, T124A, T125A, K136Q, V165I, V201I, K211R, T218I, L234V, D256E S283G 
BR.RJ.SB168 BR.RJ.SB168 None    Q9P, E11A, V32I, I72V, K111R, S119G, T122I, T124A, T125A, V201I  
BR.RJ.SB169 BR.RJ.SB169 None   V151I E10D, E11D, V31I, I60M, I72IV, G82R, T112I, T122P, D256E  
BR.RJ.SB173 BR.RJ.SB173 None    Q9P, S17N, N18I, A23V, L45V, I72V, K160T, G163Q, I200L, K211KR, D278G, D279G, C280W E13G, Y15F, N27Y, G277Y, V281G, A282T 
BR.RJ.SB22 BR.RJ.SB22 None    E11D, L28I, V31I, V32I, L101I, S119P, T122I, V201I, Y227F, D256E, A265V  
BR.RJ.SB26 BR.RJ.SB26 None    E11D, L101I, S119G, T122I, T125A, F181L, V201I, T218I  
BR.RJ.SB35 BR.RJ.SB35 None    K34R, M50L, I72V, L101I, S119T, T124A, I141V, T218I  
BR.RJ.SB56 BR.RJ.SB56 None    K7R, A21T, I72V, S119T, T124N, M154L, K219N, N222K, N254K, D278E G277Y, V281G 
BR.RJ.SB67 BR.RJ.SB67 None    E11D, S17N, I72V, I84L, L101I, S119T, T124A, T125A, K136H, V165I, V180I, V201I, A205S, K211R, T218I, L234V, A265V  
BR.RJ.SB97 BR.RJ.SB97 None    V32I, S39C, I72V, V201I, T206S, K219N, N222K S283G, R284I 
BR.RJ.TR BR.RJ.TR None    S17N, V31I, I72V, V77A, I84L, L101I, S119T, T124A, T125A, I135V, K136Q, V201I, T218I, L234V, D256E S283G 
BR.RJ.TR1 BR.RJ.TR1 None   G163R S17N, I72V, I84L, T112I, S119T, T122S, T124A, T125A, K136Q, V201I, K211R, L234V, D256E, R269K G247R, S283G 
BR.RJ.TR13 BR.RJ.TR13 None    S17N, I72V, I84L, L101I, T112I, S119T, T124A, T125A, K136Q, V201I, A205S, K211R, T218I, L234I, A265V, D278N S283G 
BR.RJ.TR67 BR.RJ.TR67 None    E10D, K14R, I84L, L101I, S119P, T124A, K136Q, V201I, T218I, L234V, D256E S283G 
BR.RJ.TR97 BR.RJ.TR97 None    S17N, I72V, I84L, L101I, T112A, S119P, T124A, T125A, K136Q, H171Y, V201I, A205S, T218I, L234V, D256E S283G 
BR.RJ.UD0 BR.RJ.UD0 None    E11D, V37I, L45Q, I72V, I84L, L101I, K111R, S119T, T124A, T125A, K136Q, V201I, A205S, K211R, T218I, L234V, D256E S283G 
BR.RS.HC BR.RS.HC None    D25E, V31I, M50T, T112V, T124N, K136Q, V201I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.HC07 BR.RS.HC07 None    E11D, K14R, D25E, V31I, M50T, E96D, L101I, T112V, T124N, K136Q, V201I, K219N, N222K, S230N, L234I, I251L, R269K, D278A V281M 
BR.RS.HC25 BR.RS.HC25 None    D25E, V31I, M50T, L74I, T112V, T124N, K136Q, K173R, V201I, K211R, T218I, L234I, I251L, A265V, R269K, D278A V281M, S283N, D286N 
BR.RS.HC29 BR.RS.HC29 None    G4E, D25E, V31I, M50T, I72V, T112V, T124N, T125A, K136Q, M154I, V165I, V201I, L234I, I251L, A265V, R269K, G272R, D278A S195N, V281M, S283N 
BR.RS.HC31 BR.RS.HC31 None    D25E, V31I, M50I, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.HC35 BR.RS.HC35 None    D25E, V31I, M50T, L101I, S119G, T124N, T125A, K136Q, V201I, I208L, L234I, I251L, A265V, R269K, D278A  
BR.RS.HC37 BR.RS.HC37 None    K14R, S24N, D25E, V31I, M50T, L101I, T112A, T124N, K136Q, V201I, T206S, K211R, T218I, L234I, I251L, A265V, R269K, D278A  
BR.RS.HF25 BR.RS.HF25 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS05 BR.RS.RGS05 None    E11D, R20K, D25E, V31I, M50T, L101I, K111R, T112V, T122I, T124N, K136Q, G193E, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS09 BR.RS.RGS09 None    R20K, V31I, M50T, L101I, T112V, T124N, K136Q, G163E, K211R, T218I, L234I, I251L, R269K, D278A V281M 
BR.RS.RGS107 BR.RS.RGS107 None    E11D, V32I, M50T, L101I, T112V, T122I, T124N, K136Q, V201I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS117 BR.RS.RGS117 None    D25E, V31I, M50T, L101I, T112V, T124N, T125A, K136Q, V201I, T218I, L234I, I251L, D256E, A265V, R269K, D278A V281M, S283N 
BR.RS.RGS17 BR.RS.RGS17 None    S24G, D25E, S39C, L45V, M50T, L101I, T112V, T124N, K136H, V201I, T218I, L234I, I251L, R269K, D278A V281M 
BR.RS.RGS23 BR.RS.RGS23 None    V31I, K34R, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, G277C, D278A V281M 
BR.RS.RGS29 BR.RS.RGS29 None    V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS33 BR.RS.RGS33 None    E13A, D25E, V31I, M50T, E96ED, L101I, T112V, T124N, K136Q, V201I, A205S, K211KR, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS37 BR.RS.RGS37 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS47 BR.RS.RGS47 None    K14KR, D25E, V32I, S39C, L101I, T112V, S119T, T124N, K136Q, V201I, T218I, L234I, I251L, D278A  
BR.RS.RGS59 BR.RS.RGS59 None    E11D, S24N, D25E, V32I, K42R, M50T, L101I, T112V, T122I, T124N, K136Q, V201I, L234I, I251L, R269K, D278A V281M 
BR.RS.RGS61 BR.RS.RGS61 None    L45Q, M50T, T112V, T124N, K136Q, V201I, I208M, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS63 BR.RS.RGS63 None    E11D, S24N, D25E, V31I, M50T, L101I, T112V, T122I, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS71 BR.RS.RGS71 None    D25E, V31I, M50T, I72V, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS73 BR.RS.RGS73 None    E11D, V31I, M50T, L101I, T112V, T124N, K136Q, F181Y, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS79 BR.RS.RGS79 None    E11D, D25E, V31I, M50IK, A91T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M, S283SG 
BR.RS.RGS81 BR.RS.RGS81 None   T97A K14R, V31I, M50T, L101I, T112I, T124N, K136Q, V201I, T206S, T218I, L234I, I251L, A265V, R269K, D278A R284G 
BR.RS.RGS83 BR.RS.RGS83 None    E11D, S24N, D25E, V31I, M50T, I72V, T112V, T124N, K136Q, V201I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS87 BR.RS.RGS87 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A  
BR.RS.RGS89 BR.RS.RGS89 None    V31I, M50T, L74I, A91T, L101I, K111T, T112V, S119G, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RGS97 BR.RS.RGS97 None    D25E, V31I, M50T, K111R, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS12 BR.RS.RS12 None    D25E, V31I, M50T, T112V, T124N, K136Q, V201I, T206S, D207E, T218I, L234I, I251L, D256E, A265V, R269K, D278A V281M 
BR.RS.RS20 BR.RS.RS20 None    V31I, M50T, L101I, T112V, T124N, T125V, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS27 BR.RS.RS27 None    V31I, M50T, L101I, T112V, T124N, K136Q, V201I, D207N, K211T, L234I, I251L, S255G, A265V, R269K, D278A V281M 
BR.RS.RS46 BR.RS.RS46 None    D25E, V31I, M50T, L101I, T112V, T124N, G134D, K136Q, V201I, T218I, L234I, A239D, I251L, A265V, R269K, D278A V281M 
BR.RS.RS49 BR.RS.RS49 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS50 BR.RS.RS50 None    E11D, A21T, S24G, D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M, D286N 
BR.RS.RS59 BR.RS.RS59 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS61 BR.RS.RS61 None    E11D, D25E, V31I, M50T, L101I, T112V, S119G, T122I, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS62 BR.RS.RS62 None    D25E, V31I, M50T, L101I, T112V, T122I, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS69 BR.RS.RS69 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS72 BR.RS.RS72 None    K14R, S24N, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T206S, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS75 BR.RS.RS75 None    K14R, S24N, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T206S, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS76 BR.RS.RS76 None    S24N, D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M, D286N 
BR.RS.RS77 BR.RS.RS77 None    E11D, D25E, V31I, M50T, L101I, T112V, S119P, T122I, T124N, K136Q, V201I, T218I, L234I, I251L, D256E, A265V, R269K, D278A V281M 
BR.RS.RS82 BR.RS.RS82 None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS87 BR.RS.RS87 None    E11D, S24N, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A V281M 
BR.RS.RS90 BR.RS.RS90 None    V31I, M50T, I72V, T112I, T124N, K136Q, G193E, V201I, L234I, I251L, R269K, D278A V281M 
BR.RS.RS91 BR.RS.RS91 None    V31I, M50T, T112V, T124N, K136Q, V201I, L234I, I251L, A265V, R269K, D278A V281M 

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