<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Avi (2010)
Title Characterization of integrase region polymorphisms in HIV type 1 CRF06_cpx viruses in treatment-naive patients in Estonia.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 112
NumPts 112
Subtype CRF06_cpx, A, CRF02_AG, B

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 112 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
N1 N1 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T122I, T125A, G134N, K136T, S153F, V201I, T206S, T218I, L234I, Q252E, D256E, S283G, D288N  
N10 N10 None    K14R, S17N, V31I, L63I, L74I, Y99F, L101I, T112V, T124A, T125A, G134D, K136T, V201I, T206S, T218I, L234I, D256E, S283G, D288N  
N11 N11 None    E11D, S24H, L45Q, L63I, L74I, L101I, T112V, S119G, T122I, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N12 N12 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, L234I, D256E, S283G, D288G  
N13 N13 None    E11D, S24N, V31I, L63I, L74I, L101I, T112V, S119G, T122I, T125A, G134N, V201I, T206S, T218I, L234I, D256E  
N14 N14 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, S255N, D256E, D279G  
N15 N15 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, K258R, V260I, S283G  
N16 N16 None    E10G, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134D, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N17 N17 None    K14R, S24N, V31I, L63I, L74I, I84M, L101I, T125A, G134N, K136A, G193E, V201I, T206S, T218I, L234V, D256E, D278N, S283G, D288N  
N18 N18 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, S255N, D270N, S283G, D288N  
N19 N19 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, G134N, K136Q, V201I, T206S, T218I, L234I, D256E, S283G  
N2 N2 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, L234I, D256E, S283G  
N20 N20 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, H171L, V201I, T206S, T218I, L234I, D256E, S283G  
N21 N21 None    K14R, S24N, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, D279G, S283G  
N22 N22 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N23 N23 None    E10D, V31I, D41N, L45Q, L63I, L74I, L101I, T122I, T124A, T125A, G134N, K136T, K188R, V201I, T206S, T218I, L234I, D256E, V260I, D278N, S283G  
N24 N24 None    E11D, E13D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N25 N25 None    K14R, S24N, D25E, V31I, L63I, L74I, L101I, K103R, T112V, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, T218I, L234I, D256E, S283G  
N26 N26 None    S24N, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218L, L234I, D256E, S283G G82S 
N27 N27 None    K14R, S17N, S24N, V31I, L63I, L74I, L101I, T112V, T122I, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N28 N28 None    K14R, S24N, V31I, K42R, L45Q, L63I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N29 N29 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N3 N3 None    E13G, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N30 N30 None    K14R, S17N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N31 N31 None    V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, H171Y, V201I, T206S, T218I, L234I, D256E, S283G  
N32 N32 None    V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124A, G134N, K136T, V201I, T206S, T218I, L234I, S255N  
N33 N33 None    V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, D167E, V201I, T206S, T218I, L234I, S255N  
N34 N34 None    E11D, K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N35 N35 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, L234I, D256E, R284G, D288N  
N36 N36 None    E11D, S24N, V31I, L45I, L63I, L74I, A91T, L101I, T112V, T124A, T125A, G134N, K136T, E157K, V201I, T206S, T218I, L234I, D256E, S283G  
N37 N37 None    E10G, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124N, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N38 N38 None    S24N, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, R187K, K188R, V201I, T206S, T218I, L234I, D256E, S283G, D286N  
N39 N39 None    S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, V260I, S283G  
N4 N4 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T122I, T124A, T125A, G134N, K136T, I141V, D167E, V201I, T206S, T218I, L234I, V249I, D256E, S283G  
N40 N40 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, V260I, S283G, D286N  
N41 N41 None    K14R, S24N, V31I, L45Q, I72V, L74I, T112V, I113V, T124S, T125A, G134N, K136Q, T206S, T218I, L234I, D256E, S283G, D286N  
N42 N42 None    S17N, V31I, L45Q, L63I, I72T, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, D278N, S283G  
N43 N43 None    K14R, S17N, V31I, L63I, L74I, P90S, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E  
N44 N44 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, T218I, L234I, D256E, S283G  
N45 N45 None    S17N, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V165I, V201I, T206S, T218I, L234I, D256E, S283G  
N46 N46 None    S17N, S24N, V31I, L63I, L74I, I84M, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G, D286N  
N47 N47 None  E138K E92K K14R, S24N, V31I, L63I, L74I, S81G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G E87K 
N48 N48 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N49 N49 None    K14R, S24N, V31I, L63I, L74I, E96D, Y99F, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, S283G  
N5 N5 None    K14R, S24N, V31I, L45Q, L63I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N51 N51 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N52 N52 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N53 N53 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, L234I, D256E, S283G  
N54 N54 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, D278N, S283G  
N55 N55 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, D207E, T218I, L234I, D256E  
N56 N56 None    D3E, R20K, V31I, V32I, D41N, A49G, I72V, L74I, T112V, I113V, T124H, T125A, G134N, K136Q, D167E, V201I, T218I, I220V, L234I, S255N  
N57 N57 None    S17N, S24N, V31I, L63I, L74I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, T218I, L234I, D256E, S283G  
N58 N58 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V165I, T206S, L234I, D256E, V260I, S283G T115S 
N59 N59 None    K14R, S24N, V31I, K42R, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N6 N6 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G, D288N  
N60 N60 None    E11D, S24N, V31I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N61 N61 None    E11D, S24N, V31I, L74I, T112V, I113V, S119P, T124S, T125A, G134N, K136Q, V201I, T206S, T218I, L234V, D256E  
N62 N62 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, D278N, V281M, S283G  
N64 N64 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, T218I, L234I, D256E, S283G  
N65 N65 None    K14R, S17N, R20K, V31I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N66 N66 None    K14R, S24N, V31I, K42R, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, K211R, T218I, L234I, S255N, S283G, D286N  
N67 N67 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112M, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G, D288N  
N68 N68 None    E10A, S17N, V31I, L45Q, L63I, L74I, L101I, T112I, T122I, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N69 N69 None    R20K, V31I, I72V, L74I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, S255N  
N7 N7 None    K14R, D25E, V31I, L45Q, L63I, L74I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G, D286N  
N70 N70 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G, D286N  
N71 N71 None   G163R V31I, L74I, A91T, L101I, T112V, I113V, S119P, T124S, T125A, G134N, K136Q, V201I, I203M, T218I, L234I, D256E, S283G  
N72 N72 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, D167E, V201I, T206S, T218I, L234I, D256E, S283G  
N73 N73 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119T, T124A, T125A, G134N, K136T, D167E, V201I, T206S, T218I, L234I, S255N, S283G, D286N  
N74 N74 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N75 N75 None    K14R, S24N, V31I, K42R, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, T206S, T218I, L234I, D256E, S283G, D286N  
N76 N76 None    K14R, S24H, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N77 N77 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N78 N78 None    S24N, V31I, L74I, L101I, T112V, T124A, G134N, K136Q, V201I, T206S, T218I, L234I, D256E, Y271H, S283G  
N79 N79 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N8 N8 None    S24N, V31I, L45Q, L63I, L74I, L101I, T112A, T124A, T125A, G134N, I135V, K136T, R187K, K188R, V201I, T206S, T218I, L234I, D256E, S283G  
N80 N80 None    K14R, S24N, V31I, L63I, L74I, E96D, L101M, T112V, T124A, T125A, K136T, V201I, T206S, T218I, L234I, D256E  
N81 N81 None    K14R, S24N, V31I, L45Q, M50R, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N82 N82 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136I, G193E, V201I, T206S, T218I, L234I, D256E, S283G, D288G  
N83 N83 None    S17N, S24N, V31I, L63I, L74I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V165I, V201I, T206S, T218I, L234I, D256E  
N84 N84 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134S, K136T, V201I, T206S, T218I, L234I, D256E, S283G, D286N  
N85 N85 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, N254K, D256E  
N86 N86 None    K14R, S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N87 N87 None    E11D, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N88 N88 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N9 N9 None    E11D, E13D, S24H, V31I, L45Q, L63I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N90 N90 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
N91 N91 None    E11D, K14R, S24N, V31I, L63I, L74I, L101I, T112V, S119T, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, V281M, S283G  
N92 N92 None    E11D, K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, D278N, S283G  
N93 N93 None    S17N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T125A, G134N, K136T, V201I, T206S, T218I, I220V, L234I, D256E, S283G  
R1 R1 None    K14R, V32I, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, I204L, T206S, T218I, L234I, D278E, S283G, D286N  
R10 R10 None    L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, R187K, V201I, T206S, T218I, L234I, D256E, V281M, D288N  
R2 R2 None    E11D, S24N, V31I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, T218I, L234I, D256E G4A 
R3 R3 None    K14R, S24N, D25E, V31I, L63I, L74I, I84M, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
R4 R4 None   V151I, G163R E11D, A21T, I72V, T112I, I113V, T125M, T218S, L234V  
R5 R5 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, S283G  
R6 R6 None    S17N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, V201I, T206S, T218I, L234I, D256E, S283G  
R7 R7 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218L, L234I, S283G, D288N  
R8 R8 None    E11D, V31I, L45Q, L63I, L74I, I84M, L101I, T112V, S119P, T122I, T125A, G134N, K136T, R187K, V201I, T206S, T218I, L234I, D256E, D278N, S283G  
R9 R9 None    S24N, V31I, L63I, L74I, L101I, T112V, S119T, T124A, T125A, K136T, V201I, T206S, L234I, D256E, S283G