<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Avi (2010)
Title Characterization of integrase region polymorphisms in HIV type 1 CRF06_cpx viruses in treatment-naive patients in Estonia.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
NumIsolates 112
NumPts 112
Subtype CRF06_cpx, CRF02_AG, A, CRF01_AE, G, B


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Page 1   from Isolate 1 to Isolate 100 from Total 112 Clinical IN Isolates

SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
N1 N1 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T122I, T125A, G134N, K136T, S153F, V201I, T206S, T218I, L234I, Q252E, D256E S283G, D288N 
N10 N10 None    K14R, S17N, V31I, L63I, L74I, Y99F, L101I, T112V, T124A, T125A, G134D, K136T, V201I, T206S, T218I, L234I, D256E S283G, D288N 
N11 N11 None    E11D, S24H, L45Q, L63I, L74I, L101I, T112V, S119G, T122I, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N12 N12 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, L234I, D256E S283G 
N13 N13 None    E11D, S24N, V31I, L63I, L74I, L101I, T112V, S119G, T122I, T125A, G134N, V201I, T206S, T218I, L234I, D256E  
N14 N14 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, S255N, D256E, D279G  
N15 N15 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, K258R, V260I S283G 
N16 N16 None    E10G, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134D, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N17 N17 None    K14R, S24N, V31I, L63I, L74I, I84M, L101I, T125A, G134N, K136A, G193E, V201I, T206S, T218I, L234V, D256E, D278N S283G, D288N 
N18 N18 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, S255N, D270N S283G, D288N 
N19 N19 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, G134N, K136Q, V201I, T206S, T218I, L234I, D256E S283G 
N2 N2 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, L234I, D256E S283G 
N20 N20 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, H171L, V201I, T206S, T218I, L234I, D256E S283G 
N21 N21 None    K14R, S24N, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, D279G S283G 
N22 N22 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N23 N23 None    E10D, V31I, D41N, L45Q, L63I, L74I, L101I, T122I, T124A, T125A, G134N, K136T, K188R, V201I, T206S, T218I, L234I, D256E, V260I, D278N S283G 
N24 N24 None    E11D, E13D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N25 N25 None    K14R, S24N, D25E, V31I, L63I, L74I, L101I, K103R, T112V, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, T218I, L234I, D256E S283G 
N26 N26 None    S24N, L45Q, L63I, L74I, G82S, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218L, L234I, D256E S283G 
N27 N27 None    K14R, S17N, S24N, V31I, L63I, L74I, L101I, T112V, T122I, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N28 N28 None    K14R, S24N, V31I, K42R, L45Q, L63I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N29 N29 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N3 N3 None    E13G, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N30 N30 None    K14R, S17N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N31 N31 None    V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, H171Y, V201I, T206S, T218I, L234I, D256E S283G 
N32 N32 None    V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124A, G134N, K136T, V201I, T206S, T218I, L234I, S255N  
N33 N33 None    V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, D167E, V201I, T206S, T218I, L234I, S255N  
N34 N34 None    E11D, K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N35 N35 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, L234I, D256E R284G, D288N 
N36 N36 None    E11D, S24N, V31I, L45I, L63I, L74I, A91T, L101I, T112V, T124A, T125A, G134N, K136T, E157K, V201I, T206S, T218I, L234I, D256E S283G 
N37 N37 None    E10G, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124N, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N38 N38 None    S24N, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, R187K, K188R, V201I, T206S, T218I, L234I, D256E S283G, D286N 
N39 N39 None    S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, V260I S283G 
N4 N4 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T122I, T124A, T125A, G134N, K136T, I141V, D167E, V201I, T206S, T218I, L234I, V249I, D256E S283G 
N40 N40 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T122I, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, V260I S283G, D286N 
N41 N41 None    K14R, S24N, V31I, L45Q, I72V, L74I, T112V, I113V, T124S, T125A, G134N, K136Q, T206S, T218I, L234I, D256E S283G, D286N 
N42 N42 None    S17N, V31I, L45Q, L63I, I72T, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, D278N S283G 
N43 N43 None    K14R, S17N, V31I, L63I, L74I, P90S, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E  
N44 N44 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, T218I, L234I, D256E S283G 
N45 N45 None    S17N, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V165I, V201I, T206S, T218I, L234I, D256E S283G 
N46 N46 None    S17N, S24N, V31I, L63I, L74I, I84M, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G, D286N 
N47 N47 None  E138K E92K K14R, S24N, V31I, L63I, L74I, S81G, E87K, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N48 N48 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N49 N49 None    K14R, S24N, V31I, L63I, L74I, E96D, Y99F, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I S283G 
N5 N5 None    K14R, S24N, V31I, L45Q, L63I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N51 N51 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N52 N52 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N53 N53 None    E11D, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, L234I, D256E S283G 
N54 N54 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, D278N S283G 
N55 N55 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, D207E, T218I, L234I, D256E  
N56 N56 None    D3E, R20K, V31I, V32I, D41N, I72V, L74I, T112V, I113V, T124H, T125A, G134N, K136Q, D167E, V201I, T218I, I220V, L234I, S255N A49G 
N57 N57 None    S17N, S24N, V31I, L63I, L74I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, T218I, L234I, D256E S283G 
N58 N58 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V165I, T206S, L234I, D256E, V260I T115S, S283G 
N59 N59 None    K14R, S24N, V31I, K42R, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N6 N6 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G, D288N 
N60 N60 None    E11D, S24N, V31I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
N61 N61 None    E11D, S24N, V31I, L74I, T112V, I113V, S119P, T124S, T125A, G134N, K136Q, V201I, T206S, T218I, L234V, D256E  
N62 N62 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E, D278N V281M, S283G 
N64 N64 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, T218I, L234I, D256E S283G 
N65 N65 None    K14R, S17N, R20K, V31I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N66 N66 None    K14R, S24N, V31I, K42R, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K188R, V201I, T206S, K211R, T218I, L234I, S255N S283G, D286N 
N67 N67 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112M, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G, D288N 
N68 N68 None    E10A, S17N, V31I, L45Q, L63I, L74I, L101I, T112I, T122I, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N69 N69 None    R20K, V31I, I72V, L74I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, S255N  
N7 N7 None    K14R, D25E, V31I, L45Q, L63I, L74I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G, D286N 
N70 N70 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G, D286N 
N71 N71 None   G163R V31I, L74I, A91T, L101I, T112V, I113V, S119P, T124S, T125A, G134N, K136Q, V201I, I203M, T218I, L234I, D256E S283G 
N72 N72 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, D167E, V201I, T206S, T218I, L234I, D256E S283G 
N73 N73 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, S119T, T124A, T125A, G134N, K136T, D167E, V201I, T206S, T218I, L234I, S255N S283G, D286N 
N74 N74 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N75 N75 None    K14R, S24N, V31I, K42R, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, T206S, T218I, L234I, D256E S283G, D286N 
N76 N76 None    K14R, S24H, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N77 N77 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N78 N78 None    S24N, V31I, L74I, L101I, T112V, T124A, G134N, K136Q, V201I, T206S, T218I, L234I, D256E, Y271H S283G 
N79 N79 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N8 N8 None    S24N, V31I, L45Q, L63I, L74I, L101I, T112A, T124A, T125A, G134N, I135V, K136T, R187K, K188R, V201I, T206S, T218I, L234I, D256E S283G 
N80 N80 None    K14R, S24N, V31I, L63I, L74I, E96D, L101M, T112V, T124A, T125A, K136T, V201I, T206S, T218I, L234I, D256E  
N81 N81 None    K14R, S24N, V31I, L45Q, M50R, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N82 N82 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136I, G193E, V201I, T206S, T218I, L234I, D256E S283G 
N83 N83 None    S17N, S24N, V31I, L63I, L74I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V165I, V201I, T206S, T218I, L234I, D256E  
N84 N84 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134S, K136T, V201I, T206S, T218I, L234I, D256E S283G, D286N 
N85 N85 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, N254K, D256E  
N86 N86 None    K14R, S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N87 N87 None    E11D, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N88 N88 None    K14R, S24N, V31I, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N9 N9 None    E11D, E13D, S24H, V31I, L45Q, L63I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N90 N90 None    S17N, S24N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, D256E S283G 
N91 N91 None    E11D, K14R, S24N, V31I, L63I, L74I, L101I, T112V, S119T, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E V281M, S283G 
N92 N92 None    E11D, K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E, D278N S283G 
N93 N93 None    S17N, V31I, L45Q, L63I, L74I, L101I, T112V, S119G, T125A, G134N, K136T, V201I, T206S, T218I, I220V, L234I, D256E S283G 
R1 R1 None    K14R, V32I, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, I204L, T206S, T218I, L234I, D278E S283G, D286N 
R10 R10 None    L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, R187K, V201I, T206S, T218I, L234I, D256E V281M, D288N 
R2 R2 None    G4A, E11D, S24N, V31I, L74I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, T218I, L234I, D256E  
R3 R3 None    K14R, S24N, D25E, V31I, L63I, L74I, I84M, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
R4 R4 None   V151I, G163R E11D, A21T, I72V, T112I, I113V, T125M, T218S, L234V  
R5 R5 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I, D256E S283G 
R6 R6 None    S17N, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, V201I, T206S, T218I, L234I, D256E S283G 
R7 R7 None    K14R, S24N, V31I, L45Q, L63I, L74I, L101I, T112V, T125A, G134N, K136T, V201I, T206S, T218L, L234I S283G, D288N 
R8 R8 None    E11D, V31I, L45Q, L63I, L74I, I84M, L101I, T112V, S119P, T122I, T125A, G134N, K136T, R187K, V201I, T206S, T218I, L234I, D256E, D278N S283G 
R9 R9 None    S24N, V31I, L63I, L74I, L101I, T112V, S119T, T124A, T125A, K136T, V201I, T206S, L234I, D256E S283G