<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Nouhin (2011)
Title Natural polymorphisms of HIV-1 CRF01_AE integrase coding region in ARV-naïve individuals in Cambodia, Thailand and Vietnam: an ANRS AC12 working group study.
Citation Infect Genet Evol.
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
NumIsolates 50
NumPts 49
Subtype CRF01_AE

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
107 VNR107 None    K14R, W19R, A21T, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, R187K, V201I, L234I S283G, D286N 
109295 KCT0109295 None    K14R, A21T, A23V, S39N, D55G, C56G, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I  
1126367 KCS1126367 None    E11D, K14R, A21T, V31I, I72V, T112V, T124N, T125A, G134N, I135V, K136R, D167E, V201I, K215N, L234I S283G 
114 VNR114 None    E11G, W19R, S39N, I72V, T112V, T124A, T125A, V126L, G134N, I135V, K136R, M154I, V165I, D167E, V201I, L234I A21R, S283G 
1209248 KCS1209248 None    E10D, K14R, A21T, V31I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136R, G163GE, V165I, D167E, V201I, L234I, S255T L2F, S195SI, S283G 
1212047 KCS1212047 None   N155I K14R, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V150E, K156R, E157G, D167E, V201I, L234I E152H, S153L, M154P 
1230214 KCS1230214 None    K7Q, E11D, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, G193D, S195C, V201I, L234I, D279DG K46K*, S283G 
1231245 KCS1231245 None    K14R, V31I, I72V, T112V, T125A, V126L, G134N, I135V, K136R, M154I, V201I, L234I S283G 
128059 KCT0128059 None    K14R, A21T, V31I, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136R, E157Q, K160T, D167E, V201I, K215N, L234I S283G 
128107 KCT0128107 None    E11D, A21T, V31I, V37VI, S39N, I72V, L101V, T112V, T124A, T125A, G134N, I135V, K136Q, V165I, D167E, V201I, L234I S283G 
128245 KCT0128245 None    K14R, A21T, V31I, I60M, I72V, A80AP, G106GE, T112V, T124A, T125A, V126F, G134N, I135V, K136Q, V165I, D167E, V201I, L234I E69EK, E152EK, S283G 
21 KC21 None    K14R, A21T, V31I, S39N, K46KR, I72V, E87EK, T112V, T124A, T125A, G134N, I135V, D167E, V201I, E212EK, L213LF, L234I, L242LF, D253E E85EQ, A86AP, R224RW, E246EK, S283G 
213216 KCT0213216 None    K14R, A21T, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, I200L, V201I, I203IM, I204L, T206S, L234I, S255T S283G 
24 VNR24 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I, G277S S283G, Q285R 
29 VNR29 None    K14R, A21T, V31I, V32I, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I S283G 
3 KC03 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I S283G 
31 VNR31 None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126L, G134N, I135V, K136R, V165I, D167E, V201I, L234I, D256E, G277GS S283G 
32 VNR32 None    K14R, A21T, V31I, S39N, Q95A, Y99F, L101I, T112V, T124A, T125A, G134DN, I135V, K136R, V165I, D167E, V201I, L234I, D253E, N254H, S255R M22MT, R228EG, G237GR, P238PT, R262G, Q274R, Q285P 
327158 KCT0327158 None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T125A, G134N, I135V, K136R, K160Q, Q164K, V201I, L234I E212ED, S283G 
330257 KCT0330257 None    E11D, K14R, A21T, M22L, V37I, I72V, T112V, T124N, T125A, G134N, I135V, K136R, D167E, V201I, L234I S283G 
36 VNR36 None    E11G, V31I, V32VI, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, V201I, L234I, G277GS S283SG, Q285QR 
37 VNR37 None    K14R, A21T, V31I, E35G, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I S283G 
38 VNR38 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, K160R, D167E, V201I, L234I, Q252R, G277C Q274R, S283G 
403298 KCT0403298 None    K14R, A21T, V31I, I72V, Q95H, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, V201I, L234I S283G 
428200 KCT0428200 None    K14R, A21T, V31I, S39N, I72IV, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, I203IM, L234I S283G, R284RG 
48 KC48 None    E11D, K14R, A21T, V31I, M50I, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I, K236R S283G 
49 KC49 None   L68I E11D, K14R, A21T, V31I, I73V, T112V, T125A, G134N, I135V, K136R, D167E, V201I, L234I, D256E S283G 
50 KC50 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, V126VM, G134N, I135V, K136Q, D167E, V201I, L234V, V259I S283G 
52 KC52 None    E11D, K14R, A21T, V31I, S39N, S57N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, G163E, D167E, V201I, L234I S153SF, D202DV, S283G 
520294 KCT0520294 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, K160Q, Q164K, D167E, R187K, V201I, L234I S283G, D288N 
522056 KCT0522056 None    E11D, A21T, S24G, D25E, S39N, L45Q, I72V, T112V, T124N, T125A, G134N, I135V, K136R, V165I, D167E, V201I, L234I Q209QP, K211I, S283G 
522058 KCT0522058 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136H, D167E, V201I, L234I S283G 
522471 KCT0522471 None    K14R, M22L, V31I, I72V, T112V, T124A, T125A, V126M, G134N, I135V, K136R, V165I, D167E, H183X, V201I, Q216H, L234I N18H, A21P, K186KI, R224RW, S283G, R284G 
53 KC53 None    K14R, A21T, I72V, T112V, T124A, T125A, V126M, G134N, I135V, K136R, D167E, V201I, L234I A8AP, S283G 
55 KC55 None    K14R, A21T, V31I, S39N, I72V, T112V, T125A, G134N, I135V, K136Q, D167E, V201I, L234IV, V259VI T124AD, V126VI, S283G 
56 KC56 None    E11D, K14R, A21T, V31I, V32I, S39SN, I72V, T112V, T124A, T125A, G134N, I135V, K136QR, D167E, V201I, L234I, V259I S283G 
59 KC59 None   V151VI E11D, K14R, A21T, V31I, S39N, L45V, I72V, T112V, T124TA, T125A, G134N, I135V, K136R, D167E, V201I, L234I S283G 
60 VNR60 None    K14R, V31I, S39N, I72V, Q95H, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I S283G 
61 KC61 None    K14R, R20K, A21T, I72V, T112V, T124N, T125A, G134N, I135V, K136R, D167E, V201I, L234I, N254K S283G 
  VNR61 Unknown   V151I K14R, A21T, V31I, S39N, I72V, L101V, T112V, T125A, G134N, I135V, K136R, V165I, D167E, V201I, L234I D25L, G272E, K273N, S283G, R284G 
63 KC63 None    K14R, A21T, V32I, I72V, T112V, T124A, T125A, K127R, G134N, K136Q, V165I, D167E, V201I, I208M, L234I S153SF, R224RW, L241LI, V281VG, S283G 
64 KC64 None    K14R, A21T, S39N, I72V, L101I, T112V, S123C, T124N, G134N, I135V, D167E, H171Q, I200M, V201I, T206S, L234I S283G 
67 KC67 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, K160KR, V165VI, D167E, V201I, L234I S283G 
68 VNR68 None    D6E, K14R, A21T, A23V, E35G, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, D167E, V201I, L234I I5K, G247R, S283G 
78 VNR78 None    K14R, W19R, A21T, V31I, S39N, L63V, T112V, T124A, T125A, G134N, I135V, K136R, V165I, A196P, V201I, L234I S283G 
79 VNR79 None    K14R, A21T, D25E, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, L234I S283G 
84 VNR84 None    K14R, W19R, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I M22T, S283G 
85 VNR85 None    E11D, K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I S283G 
87 VNR87 None    K14R, A21T, V31I, S39N, I72V, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, L234I S283G 
92 VNR92 None    K14R, A21T, S39N, T112V, T124A, T125A, G134N, I135V, K136R, D167E, V201I, T206S, I208L, L234I, K240KR, E246G, N254D, G277GS G247GR, R262G, A282P, S283SG, Q285R 

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