Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Eshleman (2009)
Title Analysis of pol integrase sequences in diverse HIV type 1 strains using a prototype genotyping assay.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 110
NumPts 110
Subtype CRF02_AG, A, B, C, F, D, G, CRF37_cpx, H, CRF01_AE, CRF09_cpx

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 110 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
122.335 122.335 None    K14KR, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134S, K136Q, K156KR, D167E, V201I, S283G  
128.318 128.318 None    S17N, M50L, I72V, L101I, T112V, I113V, T124A, T125V, V201I, T218I, L234I, L242X, D256E, A265V  
140.223 140.223 None    V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, F139Y, D167E, V201I, A265AV, R269RK, S283G  
151.94 151.94 None    S17N, S39SN, M50L, I72V, T112V, I113V, T124A, T125A, D167E, V201I, T218TI, L234I, W243*, D256E, I268L, S283G  
161.287 161.287 None    K14R, V31I, I60M, I72V, T112I, I113V, T124TA, T125A, V126F, K127KR, G134N, K136Q, E157Q, K160Q, D167E, V201I, D256DE, S283G  
182.189 182.189 None    S17N, I72V, I84L, S119T, T124GS, T125A, K136Q, G163NS, V201I, L234V, D256E, S283G  
194.793 194.793 None   T97A K14R, V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, K211R, L234I, S283G  
205.586 205.586 None    S17N, M50L, G106GA, K111Q, T112V, I113V, S119T, T124N, T125A, V201I, T218I, Q221R, L234I, D256E  
2109918 2109918 None    E11D, D25E, V31I, M50I, I72V, F100Y, L101I, K111N, T112V, T124A, T125A, K136Q, V201I, L234I, A265V, R269K, D278A, S283G  
225.692 225.692 None    D6E, K14R, S24H, V31I, L45Q, I72V, T112V, S119P, T122I, T124G, T125P, A133T, I135V, V201I, K215R, L234I, S283G  
225.706 225.706 None   L74LIM E11ED, K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136KQR, D167E, V201I, K211R, K219N, N222K, L234I, S255SN, I268L, S283G  
2387801SS 2387801SS None    I72V, T112V, I113V, T124A, F181L, V201I, A205S, K211R, L234I  
2392048 2392048 None    E11D, K14R, D25E, V31I, K34R, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, T218I, L234I, A265V, D278A, S283G  
2392528 2392528 None    D25E, N27S, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, E157Q, K160T, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G, R284RG  
2393960 2393960 None   L74M S17N, V31I, M50I, I72V, L101I, T112V, T124A, T125A, I135L, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
2394206 2394206 None   L74LIM E10D, L45I, I84IM, F100Y, L101I, G106A, T112V, S119SG, T122TI, T124A, T125A, K136Q, Q137QH, V201I, I203M, T218I, L234I, A265AV, R269K, D278A, V281M, S283G  
264.615 264.615 None    K14R, V31I, I60M, T112V, I113IV, T124A, T125A, G134GDNS, K136HQ, D167E, K173R, V201I, I208M, A265V, S283G  
264.643 264.643 None    K14R, A21T, V31I, I72V, T112I, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, I208M, N222K, L234I, D279G, S283G  
326.57 326.57 None    S17SN, R20K, I72V, T112V, I113V, S119T, T124A, T125A, K156KN, E157EQ, G163GV, V201I, T206S, K211KR, T218I, L234I, A265AV  
326.642 326.642 None    D41N, I60M, I72V, L101LM, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, D167E, V201I, S283G  
326.662 326.662 None    S17N, M50L, I72V, T112V, S119SPRT, T122TI, T124A, T125A, V165VI, G193E, V201I, L234I, S283G, D286N  
37811 37811 None   E138D S17C, I72V, I84L, L101I, S119T, T124A, T125A, I135IV, K136Q, G163GS, V201I, A205S, K211R, T218I, L234V, D256E, S283G  
39340 39340 None    M50T, K71KR, I72V, V165I, V201I, K215KR, D256E  
39462 39462 None    S17N, S24G, L28I, M50I, I73V, L101I, T112IV, I113IMV, T124N, T125A T93TKN 
437895 437895 None   V151I D3E, V31I, I72V, G163Q, K211Q, A265AV, R269RK, D278G  
503.083 503.083 None    K14R, S17N, L28I, M50L, I72V, T112AV, I113V, T124A, T125A, K188KR, V201I, T218I, L234I, D256E, A265V  
602.174 602.174 None    K14R, V31VI, S39SC, I60M, I72V, T112V, I113V, T124A, T125A, V126F, K127R, G134N, K136Q, F139Y, D167E, V201I, S283G  
607000236 607000236 None    L101I, S119T, K156N, V201I, K211R, E212I, T218S, K219N, D256E  
8000825 8000825 None    K7KR, D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, K188KR, G193GE, V201I, T218I, L234I, I251L, A265V, R269K, D278A, S283G  
8002218 8002218 None    D25E, V31I, M50I, F100Y, L101I, T112IV, T124A, T125A, K136Q, G163Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
8002823 8002823 None    D25E, M50T, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
8013805 8013805 None    L45V, M50I, I72V, P90S, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, V260I, D278A, S283DG  
8048329 8048329 None    E11D, S17N, D25E, V31I, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, I141V, V201I, T218I, L234I, S255G, R269K, D278A, S283G  
8118241 8118241 None    D25E, M50I, L101I, T112V, T124A, T125A, K136Q, M154MI, L172I, K188R, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
8119636 8119636 None    D25E, V31I, S39SN, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, A205S, T218I, L234I, A265AV, R269K, D278A, S283G  
99.237 99.237 None    S17N, R20K, S39C, L45Q, M50L, I72V, F100Y, L101I, T112V, I113V, T124A, T125A, V201I, L234I, D256E, V259I  
AB511 AB511 None    E11D, K14R, A21T, A23V, D41N, M50MI, I72V, L101I, T112IMV, T124A, T125A, G134D, K136Q, D167DE, V201I, T218I, L234I, W243X  
ABB01-96 ABB01-96 None   L74M E11D, S24N, V31I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, R224RW, L234I, A265V, D286DG  
ABB02-96 ABB02-96 None    K14R, A21T, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234V, S283G  
ABB020-96 ABB020-96 None   L74M E11D, K14R, S24N, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K, S283G, D286E  
ABB021-96 ABB021-96 None   T97TA D6S, E10ED, E13D, V32I, I72IV, L101I, T112V, I113V, T124TN, T125A, V126M, K160KR, G163GE, V201I, L234I, D279G, R284G  
ABB026-96 ABB026-96 None    E11ED, K14R, S24SN, V31VI, L101I, T112I, T125V, K136Q, V201I, Y227F, L234I, S255N, D256E, S283SG, D286DN  
ABB028-96 ABB028-96 None    K14R, V31I, I72V, L74I, P90PS, A98G, L101I, T112V, T124A, K136Q, V201I, T206S, L234I, R269K, D286N  
ABB033-96 ABB033-96 None   T97A L101I, T112I, T125V, K136Q, V201I, Y227F, L234I, S255N, D256E, S283G  
ABB046-96 ABB046-96 None    E11D, V31I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, F181L, V201I, T206S, L234I, A265V, R269K  
ABB05-96 ABB05-96 None   L74IM V31I, I72IV, L101I, T112V, T124A, T125TA, G134DN, I135IV, K136T, V201I, T206S, T218M, L234I, A265V, R269K, V281M, D288N  
ABB053-96 ABB053-96 None    E11D, K14R, V31I, K42R, S57G, I72IV, L101I, T112V, T124A, T125A, G134DN, I135V, K136T, V201I, T206S, L234I, A265AT, R269K, S283G  
ABB06-96 ABB06-96 None    E11ED, K14R, A21T, V31I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, L234I, R269K, M275MV  
ABB063-96 ABB063-96 None    K14R, V31VI, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K, S283G, D288N  
ABB07-96 ABB07-96 None    K14R, I72V, L74I, L101I, T112V, T124A, G134N, K136T, G163E, V201I, T206S, L234I, R269RK  
ABB070-96 ABB070-96 None    K14R, V31I, L101I, T112V, I113V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218M, L234I, S255N, D256E, I268IL, S283G  
ABB074-96 ABB074-96 None    S17SN, R20K, V31I, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, S283G  
ABB08-96 ABB08-96 None    K14R, A21T, V31I, L63V, I72V, L74I, T112V, S119G, T122I, T124A, T125A, K136Q, D167E, Q216H, L234I, A265V, S283G  
ABB081-96 ABB081-96 None    E11D, K14R, V31I, S57G, I72V, E96D, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K, S283G, D286N  
ABB091-96 ABB091-96 None    K14R, V31I, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, I220V, L234I, A265V, S283G  
ABB10-96 ABB10-96 None    K14R, S24SN, D25DE, V31I, M50MR, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K160N, V201I, T206S, T218I, L234I, D270DE  
ABB101-97 ABB101-97 None   L74M K14R, S17N, V31I, V32I, R107RG, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I  
ABB102-97 ABB102-97 None    K7R, K14R, V31I, M50I, Q95S, L101I, T112M, T124AG, T125A, K136Q, D167E, V201I, L234I, W243X R224Q 
ABB105-98 ABB105-98 None    E11D, K14R, S24N, V31I, I72V, T112V, T124A, T125A, G134N, I135V, S153SA, V201I, T206S, L234I, A265V, S283G  
ABB11-96 ABB11-96 None    E11D, K14R, A21T, P30S, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I E287K 
ABB11098SS ABB11098SS None    K14R, S24N, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, D207DE, T218TI, L234I, R269K  
ABB115-98 ABB115-98 None    S57N, T112V, I113V, T124N, D167E, V201I, K211R, S230N, L234I, A265V  
ABB117-96 ABB117-96 None   L74M K14R, V31I, L101I, T112V, T124A, G134N, I135V, K136T, V201I, T206S, I208M, T218I, L234I, A265V, R269K  
ABB119-98 ABB119-98 None    K14R, V31I, S57G, I72V, I84M, E96D, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, I208L, L234I, R269K, S283G  
ABB124-98 ABB124-98 None    E11ED, K14R, M50I, Y99F, L101I, T112I, T124A, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
ABB125-98 ABB125-98 None   L74M K14R, K34R, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, M275V, S283G  
ABB13-96 ABB13-96 None    K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, A265V, R269K, S283G  
ABB142-98 ABB142-98 None    E10D, K14KR, V31I, L101I, T112A, T124A, T125A, G134N, K136T, V165I, V201I, T206S, E212A, K219N, L234I, D256E, S283G  
ABB144-98 ABB144-98 None    E11D, S24N, P30S, V31I, M50I, I60IMV, L101I, T112V, T124S, T125A, G134N, K136T, V165I, D167DE, V201I, T206S, L234I, D256E, S283G Q285QH 
ABB145-98 ABB145-98 None    E11D, K14R, A21T, M22MI, A23V, V31I, D41N, M50I, I72V, L101I, T112V, T124A, T125AV, G134D, K136Q, D167E, V201I, Y227F, L234I, S283G, D288N  
ABB163-98 ABB163-98 None    E11D, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, R269K  
ABB164-98 ABB164-98 None    E11D, K14R, A21T, M22I, A23V, V31I, V32I, D41N, M50L, I72V, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, Q216H, L234I, S255N, D278N, S283G  
ABB165-98 ABB165-98 None    K14R, A21T, V31I, I72V, K111KR, T112V, T124A, T125A, G134N, K136Q, E157Q, D167E, V201I, L234I, S283G  
ABB177-98 ABB177-98 None    K14R, S24N, V31I, I72IV, L101I, K111KR, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218TI, L234I, S283G  
ABB180-98 ABB180-98 None    K14R, V31I, M50I, L101I, T112V, T124TA, T125A, K127KR, G134N, I135V, K136T, V201I, T206S, L234I, R269K  
ABB198 ABB198 None    K14R, S17N, V31I, L101I, T112V, T124G, T125A, G134N, I135V, K136T, E157Q, K160Q, V201I, T206S, L234I, S283G  
ABB201 ABB201 None   E138D K7R, K14R, S17N, V31I, M50T, I72V, L101I, T112M, T124A, T125A, K136Q, V165I, D167DE, V201VI, A205S, L234V, D256E  
ABB207 ABB207 None   T97TA E11D, K14R, V31I, S57G, Q95QP, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, Y227F, L234I, S255N, D256E, S283G  
ABB208 ABB208 None    E10D, L101I, T112V, I113V, T124A, T125A, V201I, L234I  
ABB213 ABB213 None    E11D, K14R, A21T, V31I, M50MV, I72V, L74I, T112V, T124A, T125A, V126M, G134N, K136Q, D167E, V201I, I208M, L234I, S283G  
ABB27-96 ABB27-96 None    E11D, K14R, A21T, M22I, A23V, V31I, V32VI, D41N, M50I, I72V, L101I, T112V, T124A, G134D, K136Q, D167E, V201I, L234I, S283G, D288N  
ABB29-96 ABB29-96 None    E11ED, K14KR, S24SN, D55N, S57G, I72IV, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, T218L, L234I, S255G, S283G  
ABB30-96 ABB30-96 None    K14R, V32VI, M50MI, Y99YF, L101I, T112V, T124N, G134N, K136T, V201I, T206S, K211KR, L234I, S255N, D256E, S283G  
ABB45-96 ABB45-96 None    K14R, V31I, Y99F, L101I, T112I, T124A, T125A, G134N, K136T, G163V, V201I, T206S, I220V, Y227F, L234I, S255N, D256E, S283G  
ABB51-96 ABB51-96 None    E10ED, L101I, T112I, T125V, K136Q, V201I, Y227F, L234I, S255N, D256E, S283G  
ABB52-96SS ABB52-96SS None    K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, G163GE, D167E, V201I, T206S, L234I, R269K, S283G  
ABB55-96 ABB55-96 None    K14R, V31I, L45V, M50I, L101LI, T124G, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
ABB61-96 ABB61-96 None    K14R, V31I, Y99F, L101I, T112M, S119T, T124A, T125A, G134N, K136T, V201I, T206S, D207E, K211R, Y227F, L234I, S255N, D256E, S283G, D286E  
ABB66-96 ABB66-96 None    E11D, M50I, L101I, T112I, T125V, K136Q, G163S, V201I, I208L, K211R, Y227F, L234I, S255N, D256E, A265V, S283G, E287D  
ABB78-96 ABB78-96 None    E11D, K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265AV, R269K, S283G  
ABB89-96 ABB89-96 None    K14R, V31I, I72V, L74I, L101I, T112V, I113L, T124A, K136Q, V201I, T206S, L234I, A265V, R269K, D286N  
ABB94-96 ABB94-96 None    K14R, A21T, V31I, I72V, L74I, L101I, T112V, T124A, G134N, I135V, K136T, V201I, T206S, L234I, D256E, R269K  
ABB95-97 ABB95-97 None    S17N, R20K, K71R, I84L, L101I, S119T, T124A, T125A, K136Q, D167E, V201I, T218I, L234V, D256E, S283G  
ABB98-97 ABB98-97 None    K14R, V31I, S57G, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, T206S, L234I, A265V, S283G, D286N  
ABB99-97 ABB99-97 None   T97A K14R, V31I, A91E, L101I, T112V, S119R, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, L234I, S283G  
ARG1649 ARG1649 None    S17N, I72V, I84L, L101I, S119T, T124A, T125A, K136Q, V201I, A205S, T218I, L234V, D256E, S283G  
ARG2795 ARG2795 None    E11D, S17T, V37I, I72V, I84L, A98G, L101I, T112V, S119P, T125A, K136Q, G163S, D167E, V201I, K211R, T218I, L234V, D256E  
ARG2982 ARG2982 None    E10D, I72IV, T124TA, M154I, V165I, L234V, D256E, S283G  
BrRG97-126 BrRG97-126 None    S17N, M50MI, I60V, I72V, T112TI, I113V, T124A, T125A, V165I, I182V, T218I, L234V, D256E, S283G  
BrRJ96-002 BrRJ96-002 None    S24N, L28I, M154I, V165I, V201I, I208L, Q216H