<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Eshleman (2009)
Title Analysis of pol integrase sequences in diverse HIV type 1 strains using a prototype genotyping assay.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
NumIsolates 110
NumPts 110
Subtype CRF02_AG, A, B, C, F, D, G, CRF37_cpx, H


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Page 1   from Isolate 1 to Isolate 100 from Total 110 Clinical IN Isolates

SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
122.335 122.335 None    K14KR, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134S, K136Q, K156KR, D167E, V201I S283G 
128.318 128.318 None    S17N, M50L, I72V, L101I, T112V, I113V, T124A, T125V, V201I, T218I, L234I, L242X, D256E, A265V  
140.223 140.223 None    V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, F139Y, D167E, V201I, A265AV, R269RK S283G 
151.94 151.94 None    S17N, S39SN, M50L, I72V, T112V, I113V, T124A, T125A, D167E, V201I, T218TI, L234I, W243*, D256E, I268L S283G 
161.287 161.287 None    K14R, V31I, I60M, I72V, T112I, I113V, T124TA, T125A, V126F, K127KR, G134N, K136Q, E157Q, K160Q, D167E, V201I, D256DE S283G 
182.189 182.189 None    S17N, I72V, I84L, S119T, T124GS, T125A, K136Q, G163NS, V201I, L234V, D256E S283G 
194.793 194.793 None   T97A K14R, V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, K211R, L234I S283G 
205.586 205.586 None    S17N, M50L, G106GA, K111Q, T112V, I113V, S119T, T124N, T125A, V201I, T218I, Q221R, L234I, D256E  
2109918 2109918 None    E11D, D25E, V31I, M50I, I72V, F100Y, L101I, K111N, T112V, T124A, T125A, K136Q, V201I, L234I, A265V, R269K, D278A S283G 
225.692 225.692 None    D6E, K14R, S24H, V31I, L45Q, I72V, T112V, S119P, T122I, T124G, T125P, A133T, I135V, V201I, K215R, L234I S283G 
225.706 225.706 None   L74LIM E11ED, K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136KQR, D167E, V201I, K211R, K219N, N222K, L234I, S255SN, I268L S283G 
2387801SS 2387801SS None    I72V, T112V, I113V, T124A, F181L, V201I, A205S, K211R, L234I  
2392048 2392048 None    E11D, K14R, D25E, V31I, K34R, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, T218I, L234I, A265V, D278A S283G 
2392528 2392528 None    D25E, N27S, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, E157Q, K160T, V201I, K211R, T218I, L234I, A265V, R269K, D278A S283G, R284RG 
2393960 2393960 None   L74M S17N, V31I, M50I, I72V, L101I, T112V, T124A, T125A, I135L, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
2394206 2394206 None   L74LIM E10D, L45I, I84IM, F100Y, L101I, G106A, T112V, S119SG, T122TI, T124A, T125A, K136Q, Q137QH, V201I, I203M, T218I, L234I, A265AV, R269K, D278A V281M, S283G 
264.615 264.615 None    K14R, V31I, I60M, T112V, I113IV, T124A, T125A, G134GDNS, K136HQ, D167E, K173R, V201I, I208M, A265V S283G 
264.643 264.643 None    K14R, A21T, V31I, I72V, T112I, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, I208M, N222K, L234I, D279G S283G 
326.57 326.57 None    S17SN, R20K, I72V, T112V, I113V, S119T, T124A, T125A, K156KN, E157EQ, G163GV, V201I, T206S, K211KR, T218I, L234I, A265AV  
326.642 326.642 None    D41N, I60M, I72V, L101LM, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, D167E, V201I S283G 
326.662 326.662 None    S17N, M50L, I72V, T112V, S119SPRT, T122TI, T124A, T125A, V165VI, G193E, V201I, L234I S283G, D286N 
37811 37811 None   E138D S17C, I72V, I84L, L101I, S119T, T124A, T125A, I135IV, K136Q, G163GS, V201I, A205S, K211R, T218I, L234V, D256E S283G 
39340 39340 None    M50T, K71KR, I72V, V165I, V201I, K215KR, D256E  
39462 39462 None    S17N, S24G, L28I, M50I, I73V, T93TKN, L101I, T112IV, I113IMV, T124N, T125A  
437895 437895 None   V151I D3E, V31I, I72V, G163Q, K211Q, A265AV, R269RK, D278G  
503.083 503.083 None    K14R, S17N, L28I, M50L, I72V, T112AV, I113V, T124A, T125A, K188KR, V201I, T218I, L234I, D256E, A265V  
602.174 602.174 None    K14R, V31VI, S39SC, I60M, I72V, T112V, I113V, T124A, T125A, V126F, K127R, G134N, K136Q, F139Y, D167E, V201I S283G 
607000236 607000236 None    L101I, S119T, K156N, V201I, K211R, E212I, T218S, K219N, D256E  
8000825 8000825 None    K7KR, D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, K188KR, G193GE, V201I, T218I, L234I, I251L, A265V, R269K, D278A S283G 
8002218 8002218 None    D25E, V31I, M50I, F100Y, L101I, T112IV, T124A, T125A, K136Q, G163Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A S283G 
8002823 8002823 None    D25E, M50T, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, T218I, L234I, A265V, R269K, D278A S283G 
8013805 8013805 None    L45V, M50I, I72V, P90S, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, V260I, D278A S283DG 
8048329 8048329 None    E11D, S17N, D25E, V31I, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, I141V, V201I, T218I, L234I, S255G, R269K, D278A S283G 
8118241 8118241 None    D25E, M50I, L101I, T112V, T124A, T125A, K136Q, M154MI, L172I, K188R, V201I, T218I, L234I, A265V, R269K, D278A S283G 
8119636 8119636 None    D25E, V31I, S39SN, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, A205S, T218I, L234I, A265AV, R269K, D278A S283G 
99.237 99.237 None    S17N, R20K, S39C, L45Q, M50L, I72V, F100Y, L101I, T112V, I113V, T124A, T125A, V201I, L234I, D256E, V259I  
AB511 AB511 None    E11D, K14R, A21T, A23V, D41N, M50MI, I72V, L101I, T112IMV, T124A, T125A, G134D, K136Q, D167DE, V201I, T218I, L234I, W243X  
ABB01-96 ABB01-96 None   L74M E11D, S24N, V31I, L101I, T112V, T124A, G134N, K136T, V201I, T206S, R224RW, L234I, A265V D286DG 
ABB02-96 ABB02-96 None    K14R, A21T, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234V S283G 
ABB020-96 ABB020-96 None   L74M E11D, K14R, S24N, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K S283G, D286E 
ABB021-96 ABB021-96 None   T97TA D6S, E10ED, E13D, V32I, I72IV, L101I, T112V, I113V, T124TN, T125A, V126M, K160KR, G163GE, V201I, L234I, D279G R284G 
ABB026-96 ABB026-96 None    E11ED, K14R, S24SN, V31VI, L101I, T112I, T125V, K136Q, V201I, Y227F, L234I, S255N, D256E S283SG, D286DN 
ABB028-96 ABB028-96 None    K14R, V31I, I72V, L74I, P90PS, A98G, L101I, T112V, T124A, K136Q, V201I, T206S, L234I, R269K D286N 
ABB033-96 ABB033-96 None   T97A L101I, T112I, T125V, K136Q, V201I, Y227F, L234I, S255N, D256E S283G 
ABB046-96 ABB046-96 None    E11D, V31I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, F181L, V201I, T206S, L234I, A265V, R269K  
ABB05-96 ABB05-96 None   L74IM V31I, I72IV, L101I, T112V, T124A, T125TA, G134DN, I135IV, K136T, V201I, T206S, T218M, L234I, A265V, R269K V281M, D288N 
ABB053-96 ABB053-96 None    E11D, K14R, V31I, K42R, S57G, I72IV, L101I, T112V, T124A, T125A, G134DN, I135V, K136T, V201I, T206S, L234I, A265AT, R269K S283G 
ABB06-96 ABB06-96 None    E11ED, K14R, A21T, V31I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, L234I, R269K, M275MV  
ABB063-96 ABB063-96 None    K14R, V31VI, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K S283G, D288N 
ABB07-96 ABB07-96 None    K14R, I72V, L74I, L101I, T112V, T124A, G134N, K136T, G163E, V201I, T206S, L234I, R269RK  
ABB070-96 ABB070-96 None    K14R, V31I, L101I, T112V, I113V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218M, L234I, S255N, D256E, I268IL S283G 
ABB074-96 ABB074-96 None    S17SN, R20K, V31I, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V S283G 
ABB08-96 ABB08-96 None    K14R, A21T, V31I, L63V, I72V, L74I, T112V, S119G, T122I, T124A, T125A, K136Q, D167E, Q216H, L234I, A265V S283G 
ABB081-96 ABB081-96 None    E11D, K14R, V31I, S57G, I72V, E96D, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K S283G, D286N 
ABB091-96 ABB091-96 None    K14R, V31I, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, I220V, L234I, A265V S283G 
ABB10-96 ABB10-96 None    K14R, S24SN, D25DE, V31I, M50MR, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K160N, V201I, T206S, T218I, L234I, D270DE  
ABB101-97 ABB101-97 None   L74M K14R, S17N, V31I, V32I, R107RG, T112V, T124A, T125A, G134N, K136T, V201I, T206S, T218I, L234I  
ABB102-97 ABB102-97 None    K7R, K14R, V31I, M50I, Q95S, L101I, T112M, T124AG, T125A, K136Q, D167E, V201I, R224Q, L234I, W243X  
ABB105-98 ABB105-98 None    E11D, K14R, S24N, V31I, I72V, T112V, T124A, T125A, G134N, I135V, S153SA, V201I, T206S, L234I, A265V S283G 
ABB11-96 ABB11-96 None    E11D, K14R, A21T, P30S, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I E287K 
ABB11098SS ABB11098SS None    K14R, S24N, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, D207DE, T218TI, L234I, R269K  
ABB115-98 ABB115-98 None    S57N, T112V, I113V, T124N, D167E, V201I, K211R, S230N, L234I, A265V  
ABB117-96 ABB117-96 None   L74M K14R, V31I, L101I, T112V, T124A, G134N, I135V, K136T, V201I, T206S, I208M, T218I, L234I, A265V, R269K  
ABB119-98 ABB119-98 None    K14R, V31I, S57G, I72V, I84M, E96D, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, I208L, L234I, R269K S283G 
ABB124-98 ABB124-98 None    E11ED, K14R, M50I, Y99F, L101I, T112I, T124A, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E S283G 
ABB125-98 ABB125-98 None   L74M K14R, K34R, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, Y227F, L234I, S255N, D256E, M275V S283G 
ABB13-96 ABB13-96 None    K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, A265V, R269K S283G 
ABB142-98 ABB142-98 None    E10D, K14KR, V31I, L101I, T112A, T124A, T125A, G134N, K136T, V165I, V201I, T206S, E212A, K219N, L234I, D256E S283G 
ABB144-98 ABB144-98 None    E11D, S24N, P30S, V31I, M50I, I60IMV, L101I, T112V, T124S, T125A, G134N, K136T, V165I, D167DE, V201I, T206S, L234I, D256E S283G, Q285QH 
ABB145-98 ABB145-98 None    E11D, K14R, A21T, M22MI, A23V, V31I, D41N, M50I, I72V, L101I, T112V, T124A, T125AV, G134D, K136Q, D167E, V201I, Y227F, L234I S283G, D288N 
ABB163-98 ABB163-98 None    E11D, A21T, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, R269K  
ABB164-98 ABB164-98 None    E11D, K14R, A21T, M22I, A23V, V31I, V32I, D41N, M50L, I72V, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, Q216H, L234I, S255N, D278N S283G 
ABB165-98 ABB165-98 None    K14R, A21T, V31I, I72V, K111KR, T112V, T124A, T125A, G134N, K136Q, E157Q, D167E, V201I, L234I S283G 
ABB177-98 ABB177-98 None    K14R, S24N, V31I, I72IV, L101I, K111KR, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218TI, L234I S283G 
ABB180-98 ABB180-98 None    K14R, V31I, M50I, L101I, T112V, T124TA, T125A, K127KR, G134N, I135V, K136T, V201I, T206S, L234I, R269K  
ABB198 ABB198 None    K14R, S17N, V31I, L101I, T112V, T124G, T125A, G134N, I135V, K136T, E157Q, K160Q, V201I, T206S, L234I S283G 
ABB201 ABB201 None   E138D K7R, K14R, S17N, V31I, M50T, I72V, L101I, T112M, T124A, T125A, K136Q, V165I, D167DE, V201VI, A205S, L234V, D256E  
ABB207 ABB207 None   T97TA E11D, K14R, V31I, S57G, Q95QP, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, Y227F, L234I, S255N, D256E S283G 
ABB208 ABB208 None    E10D, L101I, T112V, I113V, T124A, T125A, V201I, L234I  
ABB213 ABB213 None    E11D, K14R, A21T, V31I, M50MV, I72V, L74I, T112V, T124A, T125A, V126M, G134N, K136Q, D167E, V201I, I208M, L234I S283G 
ABB27-96 ABB27-96 None    E11D, K14R, A21T, M22I, A23V, V31I, V32VI, D41N, M50I, I72V, L101I, T112V, T124A, G134D, K136Q, D167E, V201I, L234I S283G, D288N 
ABB29-96 ABB29-96 None    E11ED, K14KR, S24SN, D55N, S57G, I72IV, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, T218L, L234I, S255G S283G 
ABB30-96 ABB30-96 None    K14R, V32VI, M50MI, Y99YF, L101I, T112V, T124N, G134N, K136T, V201I, T206S, K211KR, L234I, S255N, D256E S283G 
ABB45-96 ABB45-96 None    K14R, V31I, Y99F, L101I, T112I, T124A, T125A, G134N, K136T, G163V, V201I, T206S, I220V, Y227F, L234I, S255N, D256E S283G 
ABB51-96 ABB51-96 None    E10ED, L101I, T112I, T125V, K136Q, V201I, Y227F, L234I, S255N, D256E S283G 
ABB52-96SS ABB52-96SS None    K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, G163GE, D167E, V201I, T206S, L234I, R269K S283G 
ABB55-96 ABB55-96 None    K14R, V31I, L45V, M50I, L101LI, T124G, T125A, G134N, K136T, V201I, T206S, Y227F, L234I, S255N, D256E S283G 
ABB61-96 ABB61-96 None    K14R, V31I, Y99F, L101I, T112M, S119T, T124A, T125A, G134N, K136T, V201I, T206S, D207E, K211R, Y227F, L234I, S255N, D256E S283G, D286E 
ABB66-96 ABB66-96 None    E11D, M50I, L101I, T112I, T125V, K136Q, G163S, V201I, I208L, K211R, Y227F, L234I, S255N, D256E, A265V S283G, E287D 
ABB78-96 ABB78-96 None    E11D, K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265AV, R269K S283G 
ABB89-96 ABB89-96 None    K14R, V31I, I72V, L74I, L101I, T112V, I113L, T124A, K136Q, V201I, T206S, L234I, A265V, R269K D286N 
ABB94-96 ABB94-96 None    K14R, A21T, V31I, I72V, L74I, L101I, T112V, T124A, G134N, I135V, K136T, V201I, T206S, L234I, D256E, R269K  
ABB95-97 ABB95-97 None    S17N, R20K, K71R, I84L, L101I, S119T, T124A, T125A, K136Q, D167E, V201I, T218I, L234V, D256E S283G 
ABB98-97 ABB98-97 None    K14R, V31I, S57G, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, T206S, L234I, A265V S283G, D286N 
ABB99-97 ABB99-97 None   T97A K14R, V31I, A91E, L101I, T112V, S119R, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, L234I S283G 
ARG1649 ARG1649 None    S17N, I72V, I84L, L101I, S119T, T124A, T125A, K136Q, V201I, A205S, T218I, L234V, D256E S283G 
ARG2795 ARG2795 None    E11D, S17T, V37I, I72V, I84L, A98G, L101I, T112V, S119P, T125A, K136Q, G163S, D167E, V201I, K211R, T218I, L234V, D256E  
ARG2982 ARG2982 None    E10D, I72IV, T124TA, M154I, V165I, L234V, D256E S283G 
BrRG97-126 BrRG97-126 None    S17N, M50MI, I60V, I72V, T112TI, I113V, T124A, T125A, V165I, I182V, T218I, L234V, D256E S283G 
BrRJ96-002 BrRJ96-002 None    S24N, L28I, M154I, V165I, V201I, I208L, Q216H