Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Tu (2009)
Title Human immunodeficiency virus-1 genotypic drug resistance among volunteer blood donors in Yunnan, China.
Citation Transfusion
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 98
NumPts 49
Subtype CRF08_BC, CRF07_BC, CRF01_AE, B, B + C

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
10 plasma10 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
  PBMC10 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, T200A, Q207E, R211K  
12 PBMC12 None None   V35T, E36A, T39D, S48T, V60I, D121H, K122E, I135R, T200I  
  plasma12 None None   V35T, E36AG, T39D, S48T, V60I, D121H, K122E, T200I  
13 PBMC13 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, K122E, D123N, I135V, S162C, Q174R, Q207A, R211K  
  plasma13 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, K122E, D123N, I135V, S162C, Q174R, Q207A, R211K  
14 plasma14 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, R211G  
  PBMC14 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, R211G  
15 PBMC15 None None   E6D, K11T, V35T, T39K, K43E, K64R, K122E, D123S, S162C, K173S, Q174K, D177E, Q207A, R211S, K238R  
  plasma15 None None   E6D, K11T, V35T, T39K, K43E, K64R, K122E, D123S, S162C, K173S, Q174K, D177E, Q207A, R211S, K238R  
16 PBMC16 None None   T107S, I135V, S162C, Q207H, R211K  
  plasma16 None None   T107S, I135V, S162C, Q207H, R211K  
17 PBMC17 None None   V35T, E36A, T39D, S48T, E53D, V60I, D121H, K122E, I135V, S162C, D177E, Q207E, R211K  
  plasma17 None None   V35T, E36A, T39D, S48T, E53D, V60I, D121H, K122E, I135V, S162C, D177E, Q207E, R211K  
18 PBMC18 None None   V35T, T39N, S48T, E53D, V60I, T69S, I135V, S162C, Q207E, R211K  
  plasma18 None None   V35T, T39N, S48T, E53D, V60I, T69S, I135V, S162C, Q207E, R211K  
19 plasma19 None None   A98S, E169D, G196E, E204K, R211A  
  PBMC19 None None   A98S, E169D, G196E, E204K, R211A  
plasma2 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K E29ED, R83REGK, G93GR, I94IT, L109LP, D113DE, R143RK 
  PBMC2 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
22 PBMC22 None None   V35T, E36A, T39D, S48T, V60I, D121H, K122E, I135T, K166R, R211K  
  plasma22 None None   V35T, E36A, T39D, S48T, V60I, D121DHNY, K122E, I135T, K166R, R211K  
23 plasma23 None None   V8I, V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, T200I, Q207G, R211K  
  PBMC23 None None   V8I, V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, T200I, Q207G, R211K  
24 plasma24 None None  V179D K20R, V35T, T39E, S48T, V60I, I135V, S162C, T200A, Q207G, R211K  
  PBMC24 None None  V179D K20R, V35T, T39E, S48T, V60I, I135V, S162C, T200A, Q207G, R211K  
25 plasma25 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T200A  
  PBMC25 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T200A  
26 plasma26 None None   V35T, E36A, T39DN, S48T, E53D, V60I, I135L, S162C, Q207E, R211K  
  PBMC26 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
28 PBMC28 None None   V35T, E36A, T39D, S48T, E53D, V60I, S162H, T200A, Q207E, R211K  
  plasma28 None None   V35T, E36A, T39D, S48T, E53D, V60I, S162H, T200A, Q207E, R211K  
PBMC3 None None   V35T, E36A, T39D, S48T, E53D, V60I, D121DA, I135V, S162C  
  plasma3 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, R211K  
30 plasma30 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, S162C, Q174E, D177E, I178M, E204K, Q207A, R211S, K238R  
  PBMC30 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, S162C, Q174E, D177E, I178M, E204K, Q207A, R211S, K238R  
31 plasma31 None None   V35T, E36A, T39D, S48T, V60I, T69S, I135V, E138A, S162C, E169ED, Q207E, R211K  
  PBMC31 None None   V35T, E36A, T39D, S48T, V60I, T69S, I135V, E138A, S162C, E169D, Q207E, R211K  
32 PBMC32 None None   V35T, T39D, S48T, V60I, D121H, K122E, K166R  
  plasma32 None None   V35T, E36EA, T39D, S48T, V60I, D121Y, K122E, K166R  
34 plasma34 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, I202IV, Q207E, R211K, L228H  
  PBMC34 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, I135V, S162C, Q207E, R211K  
35 plasma35 None None  V108VI V35T, E36A, T39D, S48T, E53D, V60I, T69S, K102KR, D123E, I135V, S162C, Q207G, R211K  
  PBMC35 None None   V35T, E36A, T39D, S48T, E53D, V60I, T69S, K102R, D123E, I135V, S162C, Q207G, R211K  
36 plasma36 None None   V35T, E36A, T39D, S48T, E53D, S162Y, T200A, Q207E, R211K L228C 
  PBMC36 None None   V35T, E36A, T39D, S48T, E53D, S162Y, T200A, Q207E, R211K L228C 
37 PBMC37 None None   E6D, K11S, V35T, T39K, K43E, S68G, K102R, K122E, D123N, I135T, K166R, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S  
  plasma37 None None   E6D, K11S, V35T, T39K, K43E, S68G, K102R, K122E, D123N, I135T, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S  
39 plasma39 None None   V35T, E36A, T39E, S48T, E53D, V60I, S162C, Q207A I135GLRV 
  PBMC39 None None   V35T, E36A, T39E, S48T, E53D, V60I, S162C, Q207A I135I*LR 
40 PBMC40 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E  
  plasma40 None None   E28K, K32E, V35T, E36A, T39D, S48T, V60I, D121Y, K122E  
41 PBMC41 None None   E6D, K11T, V35T, T39K, K43E, K64R, K122E, D123S, S162C, K173S, Q174K, D177E, I178M, Q207A, R211S, K238R  
  plasma41 None None   E6D, K11T, V35T, T39K, K43E, K64R, K122E, D123S, S162C, K173S, Q174K, D177E, I178M, T200TA, Q207A, R211S, K238R  
42 plasma42 None None   E6D, K11T, V35T, T39R, K43E, K122E, D123S, S162C, F171Y, K173R, Q174K, D177E, I178M, Q197L, E203D, Q207A, R211S, K238R  
  PBMC42 None None   E6D, K11T, V35T, T39R, K43E, K122E, D123S, S162C, F171Y, K173R, Q174K, D177E, I178M, Q197L, E203D, Q207A, R211S, K238R  
43 plasma43 None None   E6D, K11T, V35T, T39K, K43E, K64R, K122E, D123S, S162C, K173S, Q174K, D177E, I178M, Q207A, R211S, K238R  
  PBMC43 None None   E6D, K11T, V35T, T39K, K43E, K64R, K122E, D123S, S162C, K173S, Q174K, D177E, I178M, Q207A, R211S, K238R  
44 PBMC44 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
  plasma44 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
45 plasma45 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q174K, Q207E, R211K  
  PBMC45 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, P170S, Q174K, Q207E, R211K  
46 PBMC46 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
  plasma46 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
47 plasma47 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, I178M, Q207E, R211K  
  PBMC47 None None   V35T, E36A, T39D, S48T, E53D, V60I, K82R, R83K, K104R, I135V, S162C, Q207E, R211K  
48 plasma48 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162Y, Q207E, R211K  
  PBMC48 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162Y, Q207E, R211K  
49 PBMC49 None None   E6D, K11T, V35T, T39K, K43E, S68SG, K122E, D123S, I135T, S162C, K173I, Q174K, D177E, I178M, Q207A, L210M, R211S, K238R  
  plasma49 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, I135T, S162C, K173I, Q174K, D177E, I178M, Q207A, L210M, R211S, K238R E89EK, S105SP, Q222QH 
plasma5 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R  
  PBMC5 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, K173I, Q174K, D177E, I178M, T200I, Q207A, R211S, K238R  
50 PBMC50 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
  plasma50 None None   V35T, E36A, T39D, S48T, E53D, V60I, V90VI, I135V, S162C, K173KN, Q207E, R211K  
51 plasma51 None None   V35T, E36A, T39D, V60I, D121Y, K122E  
  PBMC51 None None   V35T, E36A, T39D, V60I, D121Y, K122E  
53 plasma53 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, S162C, K173R, Q174E, D177E, I178M, E204K, Q207A, R211S, K238R  
  PBMC53 None None   E6D, K11T, V35T, T39K, K43E, K122E, D123S, S162C, K173R, Q174E, D177E, I178M, E204K, Q207A, R211S, K238R  
54 plasma54 None None   K32Q, V35T, E36V, T39N, S48T, V60I, D121Y, K122E, E169D  
  PBMC54 None None   K32Q, V35T, E36V, T39N, S48T, V60I, D121Y, K122E, E169D  
55 PBMC55 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, R211G  
  plasma55 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, I178IM, R211G  
56 plasma56 None None   V35T, T39D, S48T, V60I, K122E, I135AV  
  PBMC56 None None   V35T, T39D, S48T, V60I, K122E, I135IV  
57 PBMC57 None None A62V  V35T, E36A, T39E, S48T, E53D, V60I, T69N, I135V, S162C, Q207E, R211K  
  plasma57 None None A62V  V35T, E36A, T39E, S48T, E53D, V60I, T69N, I135V, S162C, Q207E, R211K  
58 plasma58 None None   V35T, E36A, T39D, S48T, E53D, V60I, I135V, S162C, Q207E, R211K  
  PBMC58 None None   V35T, E36A, T39D, S48T, E53D, V60I, K122KR, I135V, S162C, Q207E, R211K  
plasma6 None None   V35T, E36A, T39D, S48T, K49R, V60I, D121Y, K122E  
  PBMC6 None None   V35T, E36A, T39D, S48T, K49R, V60I, D121Y, K122E  
60 plasma60 None None   V8I, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, R211K  
  PBMC60 None None   V8I, V35T, E36A, T39D, S48T, V60I, D121Y, K122E, R211K  
61 PBMC61 None None   V35T, T39N, S48T, E53D, V60I, T69S, K122P, D123E, I135V, S162C, D177E, T200A, Q207E, R211K  
  plasma61 None None   V35T, T39N, S48T, E53D, V60I, T69S, K122P, D123E, I135V, S162C, D177E, T200A, Q207E, R211K  
PBMC7 None None   E6D, K11T, V35T, T39N, K43KE, S68G, K122E, D123N, K173I, Q174K, N175H, D177E, I178M, T200I, Q207A, R211S  
  plasma7 None None   E6D, K11T, V35T, T39KN, K43E, S68G, K122E, D123N, K166R, K173I, Q174K, N175H, D177E, I178M, T200V, Q207A, R211S  
PBMC9 None None   V35T, E36A, T39D, S48T, V60I, D121Y, K122E, T165I, Q207E, R211K  
  plasma9 None None   V35AT, E36A, T39D, S48T, V60I, D121Y, K122E, T165I, Q207E, R211K