Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Brennan (2008)
Title The prevalence of diverse HIV-1 strains was stable in Cameroonian blood donors from 1996 to 2004.
Citation JAIDS
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 572
NumPts 572
Subtype CRF02_AG, A, F, G, D, CRF09_cpx, H, CRF06_cpx, CRF01_AE, A + G, CRF37_cpx, B, CRF63_02A1, CRF18_cpx, C

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 572 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
0031-1 0031-1 None    K14R, V31I, I72V, A98G, L101I, T112I, T125A, K136Q, G163T, V201I, Y227F, L234I, S255N, D256E, A265V, D288N  
0032-2 0032-2 None    S17C, V31I, L74I, E96D, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, L234I, R269K  
02-02 02-02 None    K14R, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, I141V, V201I, T206TS, L234I, S283G, R284G, D288N  
04-04 04-04 None    E13D, K14R, A21T, V31VI, S39N, I60V, L101I, T112V, T124A, T125A, G134N, K136T, V201I, T206S, Q221E, L234I, D270H, S283G  
10-10 10-10 None    V31I, L45I, L74I, E96ED, L101LI, T112V, I113V, T124A, T125A, I135V, V201I, T206S, T218I, L234I, A265V, D278N, S283G  
1007-23 1007-23 None    D6S, K7Q, E13D, S17N, T112V, I113V, T124A, K160Q, V201I, L234I, D279G, R284G  
1010-33 1010-33 None    K14R, S17N, M50I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V165I, V201I, T206S, L234I, D256E, S283G  
1012-28 1012-28 None   L74M, T97A K14R, V31I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, G163A, V201I, T206S, T218I, L234I  
1021-2 1021-2 None    E11D, K14R, V32I, D41N, M50I, I72V, T112V, I113V, T124A, T125A, G134D, K136Q, D167E, V201I, L234I, S283G, D288N  
104-21 104-21 None    K14R, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134D, I135V, K136T, V201I, T206S, L234I, S283G  
1049-1 1049-1 None    V31I, D41N, L101I, T112I, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, T218I, L234I, R269K, S283G  
1055-7 1055-7 None    E11D, K14R, S17SC, A23AV, S24SN, V31I, I72V, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, R269K, D286N  
1072-2 1072-2 None    K14R, V31I, M50R, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, G193D, V201I, T206S, L234I, I251L, A265V, S283G  
109-18 109-18 None    K14R, V31I, M50I, L101I, T112V, T124A, T125A, G134N, I135IV, K136T, V201I, T206S, T218TI, L234I, A265V, R269K, S283G, D286DN, D288N  
1129 1129 None    E11D, K14R, A21T, V31I, S39C, M50I, I72V, P90T, L101I, T112V, T124G, T125A, K136Q, D167E, V201I, L234V, Q252K, S283G  
1137-21 1137-21 None    E11D, K14R, V31I, D41N, M50I, I72V, L101I, T112V, T124A, T125A, K127R, G134D, K136Q, D167E, G193E, V201I, L234I, I268L, D270N, S283G, D288N  
1166-16 1166-16 None    K14R, V31I, K34R, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, S283G  
119-28 119-28 None    K14R, V31I, L101I, T112V, I113IL, S119SG, T124G, T125A, G134N, K136Q, D167E, T206S, I208IL, T210TI, K211KR, L234I, S283G, R284G, D288N  
119-30 119-30 None    K7KR, R20RK, V31I, L74LI, I84IM, L101I, T112V, T124A, T125A, G134N, I135V, K136T, G193GR, V201I, T206S, L234I, N254ND, A265V, D278N, S283G  
1193-8 1193-8 None    K14R, V31I, L63I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K  
1219-47 1219-47 None    E11D, K14R, S24N, V31I, L101I, T112V, S119R, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V  
1230-24 1230-24 None    K14R, V31I, I60T, Q95H, E96D, L101I, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, I203M, I208L, L234I, R269K, S283G, D288N  
124-33 124-33 None    K14R, A21T, S39C, L63I, I72V, L74I, T112V, I113V, S119ST, T124A, T125A, V126M, G134N, I135V, D167E, V201I, K211R, Q216H, L234I, S283G  
127-44 127-44 None    E11ED, K14KR, V31I, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K, D286N  
128-28 128-28 None   L74M K7KR, K14R, V31I, L101I, T112V, T124A, G134N, I135V, K136T, V201I, T206S, K219N, N222K, L234V, R269K  
129-26 129-26 None    D6S, K7E, E11D, E13D, I72V, T112V, I113V, T124A, D167E, V201I, K211R, T218I, L234I, A265V, D279G, R284G  
1311-39 1311-39 None    V31VI, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, D207E, I220M, Y227F, L234I, S255N, A265V  
132-4 132-4 None    K14R, V31I, M50I, L101I, T112V, T124A, T125A, G134N, I135IV, K136T, V201I, T206S, L234I, A265V, R269K, S283G, D286N, D288N  
133-41 133-41 None   T97A E11D, K14R, V31I, K42R, M50I, A91S, L101I, T112V, T124S, T125V, G134N, K136T, G193E, V201I, I208L, Q216H, L234I, N254K, S255G, S283G, D286N  
133-50 133-50 None    A21S, S24N, V31I, Y99F, L101I, T112V, T122I, T124A, T125A, G134N, K136T, V201I, N222NT, L234V, S283G  
14-14 14-14 None    K7R, E11D, E13ED, S17ST, V31I, I72V, T112V, I113V, T124A, T125A, K136Q, V201I, Y227F, L234V, A265V, S283G, D288N  
140-37 140-37 None    V31I, L74I, L101I, T112V, S119A, T124A, T125A, G134N, I135V, K136T, G163A, F181L, V201I, T206S, T218I, L234I, A265V, R269K, D278N, S283G  
144-26 144-26 None    K14R, R20K, V31I, M50T, L101I, T112V, T124A, T125V, G134N, K136T, V201I, T206S, L234I, S255N, D256E, S283G  
145-01 145-01 None    K14R, V31I, A91E, L101I, T112V, S119R, T124A, T125A, G134N, I135V, K136T, E157Q, V201I, T206S, L234I, A265V, R269K, S283G  
147-19 147-19 None    V31I, D55N, L101I, T112I, T125V, K136Q, G163E, V201I, T206S, Y227F, L234V, S255N, D256E, S283G, R284G E287K 
148-04 148-04 None    K14R, V31I, L101I, T112I, T124A, T125A, G134N, K136T, V165I, G193E, V201I, I208L, T218I, L234I, D256E, V260VI, D286N  
148-35 148-35 None    K7R, E11D, K14R, V31I, S57G, I72V, L101I, T112V, T124N, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K, S283G, D286A  
149-12 149-12 None    K14R, R20K, V31I, L101I, T112V, T124A, T125A, G134D, I135V, K136T, Q137H, G163A, V201I, I204IV, T206S, Y227F, L234I, S255N, D256E, S283G, D286AG  
16-16 16-16 None    E11D, S24N, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K160R, V201I, T206S, T218I, Q221R, L234I, R269K  
161-17 161-17 None    E11D, V31I, L74I, Y99F, L101I, T112V, T124A, T125A, G134D, I135V, K136T, V201I, T206S, L234I, A265V, R269K, D278N, S283G  
164-21 164-21 None   L74LIM K7KR, K14R, V31I, Q53H, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, R269K  
164-29 164-29 None    V31I, L101I, K111T, T112V, T124A, T125A, I135V, K136T, V201I, T206S, T218TI, L234I, A265V, R269K, S283G, R284G E287K 
167-3 167-3 None    K14R, V31I, S57G, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K, S283G  
17-17 17-17 None    S17SN, V31VI, K42KR, L101I, S119T, T125V, K136Q, G163E, V201I, Y227F, L234V, S255N, D256E, D278DN, S283G  
171-22 171-22 None    K14R, A21T, V31I, Q95P, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K, S283G  
172-28 172-28 None    E11D, L45Q, T112V, S119T, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, S283G  
172-8 172-8 None    K14R, M50T, T112I, T125V, K136Q, G163S, V201I, Y227F, L234I, S255N, D256E, S283G  
173-20 173-20 None   L74M K14R, V31I, L101I, K103R, T112V, T124A, T125A, G134N, I135V, K136T, G163E, V201I, T206S, L234I, R269K, S283G, D288N  
173-30 173-30 None   T97TA A98AS, L101I, T112I, T124TN, T125V, K136Q, V165I, V201I, I208IM, Y227F, L234V, N254D, S255N, D256E, S283G, D286N  
175-11 175-11 None    R20K, L101I, T112V, T124N, G134N, K136T, V201I, T206S, D207DE, I208IM, L234I, S255N, D256E, S283G, D286A  
178-15 178-15 None    E11D, K14R, S24N, V31I, L101I, T112V, S119G, T124N, G134N, K136T, V201I, T206S, I208M, L234I, S255N, D256E, V281M, S283G  
179-22 179-22 None   T97A, A128T E11D, E13D, L101I, T112I, T125V, K136Q, V201I, T206S, L234I, V281M, S283G  
18-30 18-30 None   T97A E11D, A21T, A23V, V31I, M50I, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136Q, D167E, V201I, T218S, Y227F, L234V, V260I, S283G  
18-9 18-9 None   L74M K14R, V31I, L101I, K111T, T112TI, T124A, T125A, G134N, K136T, V201I, T206S, L234I, S255N, D256E, S283G  
182-29 182-29 None    K14R, R20K, V31I, L101I, T112V, S119ST, T124A, T125A, G134N, I135V, V201I, T206S, L234I, I251IL, S283G K136PT 
187-2 187-2 None   L74M K14R, V32I, S39C, L101I, T112V, T124A, T125A, G134N, I135V, K136T, D167E, V201I, T206S, L234I, R269K  
190-3 190-3 None    K14R, V31VI, S57G, I72V, L101I, T112V, T124A, T125V, G134N, I135V, K136T, V201I, T206S, I208L, L234I, S283G  
191-4 191-4 None    K14R, V31I, K46KR, L101I, T112V, S119T, T124A, T125A, G134N, K136T, K188R, V201I, T206S, T218I, L234I, A265V, S283G  
191-48 191-48 None    K14R, V31I, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, F181L, V201I, T206S, T218I, L234I, S283G  
192-1 192-1 None   L74M K14R, V31I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I  
193-6 193-6 None    E11D, E13ED, K14KR, A21T, V31I, L63I, I72V, L74I, T112V, T124A, T125A, V126M, G134DN, I135V, D167E, V201I, Q216H, L234I, A265AV, S283G  
198-20 198-20 None    K14R, S39C, L101I, T124A, T125A, G134N, I135V, K136T, R187K, V201I, T206S, T218I, L234I  
218-16 218-16 None    E11D, S17C, V31I, I72V, L101I, T112V, T124A, T125A, G134DN, I135V, K136T, D167E, V201I, T206S, T218I, L234I, R269K, S283G, D288N  
22-22 22-22 None    E11ED, K14R, R20K, V31I, L101I, G106GA, T112V, S119ST, T124A, T125TA, G134DN, I135IV, V201I, T206S, L234I, I251IL, S283G K136KPQT 
226-40 226-40 None    E11D, S57G, I72V, P90T, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V165I, V201I, T206S, T218I, K219Q, L234I, S283G, D288S  
235-4 235-4 None    K14R, V31I, L101I, T112I, T124A, T125A, G134D, K136T, D167E, V201I, T206S, L234I, D270G, S283G  
238-28 238-28 None   L74M K14R, S24N, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V165I, V201I, T206S, T218I, L234I, R269K, D288N  
239-40 239-40 None    E11D, K14R, A21T, M22MI, A23V, V31I, V32I, D41N, M50I, I72V, L74I, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, L234I, S283G, D288N  
244-12 244-12 None    E11ED, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, F181L, V201I, T206S, I208IM, T218TI, L234I, A265AV, S283G  
247-05 247-05 None    K7KR, K14R, V31I, L101I, T112V, T124A, T125AV, G134N, I135V, K136T, V201I, T206S, L234I, A265V, S283G I203IT 
247-16 247-16 None    E11D, K14R, A21T, A23V, V31I, D41N, M50I, I72V, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, L234I, S283G, D288N  
252-14 252-14 None    E11ED, S17SN, V31I, L74I, L101I, T112V, T124A, T125A, G134N, K136Q, V201I, T206S, L234I, S283G  
253-21 253-21 None   L74M V31VI, T112V, T124A, G134N, K136T, V201I, T206S, T218TI, L234I, I251L, A265V  
255-09 255-09 None    K14R, R20K, V31I, M50L, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, S283G  
259-07 259-07 None    K14R, V31I, S39C, L101I, T112I, T124A, T125A, G134N, I135V, K136T, F181Y, V201I, T206S, Q216H, D232E, L234I, S283G  
260-50 260-50 None    K14R, V31I, L45LV, L101I, T112V, T124A, T125A, I135V, K136Q, D167E, V201I, I208L, L234I, D256E, S283G  
262-26 262-26 None    E11D, K14R, S24N, T112I, T124A, T125A, G134N, K136T, V201I, T206S, L234I, S283G  
263-21 263-21 None    K7R, K14R, V31I, L74I, I84M, L101I, T112V, T124A, T125A, G134N, I135V, K136T, G163E, V201I, T206S, I208M, L234I, R269K  
265-03 265-03 None    E11D, S24N, V31I, L74I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K, D278N, S283G, R284G  
27-18 27-18 None    K14R, V31I, S57G, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, A265V, R269K, D286N  
271-15 271-15 None    E11D, K14R, S17T, S39C, L45V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K, S283G  
274-32 274-32 None    E10G, K14R, V31I, I72V, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, I208M, T218I, L234I, S255SG, A265V, S283G  
280-4 280-4 None    E11D, K14R, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, T218I, L234I, R269K, S283G W235W* 
282-6 282-6 None   T97A V31I, L101I, T112I, S119T, T125V, K188KR, V201I, K211KR, Y227F, L234I, S255N, D256E, A265V, R269RK, S283G  
284-10 284-10 None    K14R, A21T, V31I, I72V, L101I, T112V, T122TI, T124A, T125A, K136Q, D167E, T218I, L234I, S255N, D279A, S283G S119SKNR 
29-29 29-29 None    K14R, V31I, L101I, T112IV, S119P, T124A, T125A, G134N, I135V, K136T, V201I, T206S, L234I, R269K, S283G V79VE 
293-19 293-19 None    K14R, V31I, S57G, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, V201I, T206S, R224W, L234I, D256E, I268L, D270N, S283G  
294-22 294-22 None    D6DE, K14R, V31I, M50MT, S57G, I72V, L101I, T112V, T124A, T125A, G134N, I135V, K136T, K188KR, G193GR, Y194YC, V201I, T206S, T218IM, L234I, A265V, S283G  
311-7 311-7 None    E11D, T112I, T125V, K136Q, V201I, I208M, Y227F, L234I, S255N, D256E, V260I, A265V, S283G  
314-40 314-40 None    K14R, V31I, I72V, I84V, T112V, T124A, T125A, G134N, K136T, V201I, T206S, I208M, Y227F, L234I, S255N, D256E, S283G  
3161-19 3161-19 None    E11D, K14R, V31I, Y99F, L101I, T112V, T124A, T125A, G134D, I135V, K136T, K173R, V201I, T206S, Q221QK, N222NH, L234I  
322-43 322-43 None    K14R, V31I, E96D, L101I, G106A, T112V, T124G, T125A, G134N, I135V, K136T, E157HQ, K160Q, V201I, A205S, T206S, L234I, S283G  
323-41 323-41 None    K14R, V31I, I72IV, Y99F, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157Q, K160Q, V201I, T206S, L234I, R269K, S283G  
3231-37A 3231-37A None    E11D, K14KR, A21T, V31I, L101I, T112V, T124A, T125A, G134N, I135V, K136T, E157EQ, V201I, T206S, L234I, R269K, S283G  
328-02 328-02 None    L101I, T112V, S119R, T124A, T125A, G134N, I135V, K136T, I161L, G163E, V201I, T206S, L234I, S283G  
328-46 328-46 None    L101I, T112V, T124A, T125A, G134N, K136T, E157K, V201I, T206S, L234I, I268L, S283G D25N, E48K, V151M 
33-33 33-33 None    D6S, E10D, E13D, V32I, I72V, T112V, I113V, T124A, V201I, T206S, Y227F, L234I, S255N, D256E, S283SG  
336-39 336-39 None   L74M E10D, K14R, I72V, A91E, T112V, I113V, S119R, T122I, T124A, T125A, V201I, K211R, T218I, L234I, R284G  
346-13 346-13 None   L74M K14R, V31I, L101I, T112I, T124A, T125A, G134N, I135V, K136T, G163A, T206S, T218I, L234I, D256E, I268L, D279A  
346-30 346-30 None   T97TA V31I, L74I, Q95QP, L101I, T112V, T125A, G134N, I135V, K136T, V201I, T206S, L234I, A265V, R269K, V281M, S283G, D288N