| Subject | Isolate | NRTIs | NNRTIs | NRTI Mut | NNRTI Mut | Common | Unusual |
|---|
| CH1 | MR_CH1 | None | None | | | A98S, Q174H, T200A, R211K, A272P | |
| CH10 | MR_CH10 | Unknown, ABC, 3TC | Unknown | M41L, T215F | | I135T, T139A, Q145R, R211K, V245M | N81T |
| CH11 | MR_CH11 | None | None | | | V35VM, V60I, K104R, V118I, K122KNRS, D123E, I135T, D177E, G196GR, T200A, E204ED, R211K, F214L | |
| CH12 | MR_CH12 | None | None | | | D123E, R211K, F214L, A272P | |
| CH13 | MR_CH13 | None | None | | V108I | V35I, V106I, D123E, Q174L, D177E, I180V, T200I, R211K, V245T, A272P, K277R | |
| CH14 | MR_CH14 | None | None | | | V35T, E40D, V60I, I135V, I142V, K201R, R211K, A272P | |
| CH15 | MR_CH15 | None | None | | | V35T, I135V, I142V, R211K, A272P, V276I | |
| CH16 | MR_CH16 | None | None | | | D123E, S162C, T200A, K277R | |
| CH17 | MR_CH17 | Unknown, AZT, 3TC | Unknown | M41L, V75M, F77L, M184V, T215Y | | E6K, E40D, K122E, I142V, S162D, E169D, E203D, R211K, A272P, K277R | |
| | MR_CH17.1 | Unknown, AZT, 3TC, D4T, DDI | Unknown, EFV | M41L, V75M, F77L, F116Y, Q151M, M184MIV, T215Y | L100I, K103N | E6K, V118I, K122E, I142V, S162D, E169D, T200A, E203D, Q207H, R211K, A272P, K277R | |
| CH18 | MR_CH18 | Unknown, D4T, DDI | Unknown | | K103N | D177G, T200A, I202V, L210F, R211K, V245T | |
| | MR_CH18.1 | Unknown, D4T, DDI | Unknown | | K103N, P225H | D177G, T200A, I202V, L210F, R211K, V245T | |
| | MR_CH18.2 | Unknown, D4T, DDI, ABC, AZT, 3TC | Unknown | | K103N | K122E, D177G, R211K, V245T | |
| CH19 | MR_CH19 | Unknown, D4T, 3TC | Unknown, NVP | M41L, M184I, L210W, T215Y | Y188L | V35VL, T39TA, K43Q, K122E, D123E, I135T, D177E, R211K, S251I, A272S | |
| CH2 | MR_CH2 | Unknown, AZT, 3TC | Unknown | M184V, T215Y | | V35T, D123E, I135T, S162C, E169A, K173A, Q174K, T200I, Q207A, R211K, V245Q, D250E, A272P | E40N |
| CH20 | MR_CH20 | Unknown, AZT, 3TC | Unknown | | | I135T, D177E, Q207E, V245T | |
| CH21 | MR_CH21 | None | None | | | S162C, R172RK, T200A, R211S, V245L, V276VI | |
| CH22 | MR_CH22 | Unknown, AZT, 3TC | Unknown | | | I31L, V35I, T39A, V60I, I135T, G141A, S162Y, R172RK, V245M, A272P, K277R | V90L |
| CH23 | MR_CH23 | None | None | | | D121DN, D123E, I135T, K166R, F214L, A272P | |
| CH24 | MR_CH24 | Unknown, AZT, 3TC | Unknown | | | D123E, I135T, D177E, T200A, E204D | |
| CH25 | MR_CH25 | None | None | | | D123E, I135T, S162C, D177E, R211K, F214L, H221L, A272P | |
| CH26 | MR_CH26 | None | None | M184V | | K122E, K166R, R172RK, D177E, R211K, D250E, K277R | S134SI |
| CH27 | MR_CH27 | None | None | | | V106I, K122E, I142V, I159V, T200I, F214L, A272P | |
| CH28 | MR_CH28 | None | None | M41L, T215D | | K20R, V35T, V60I, K122P, I135T, S162C, D177E, G196E, R211G, A272P, K277R | |
| CH29 | MR_CH29 | Unknown, AZT, 3TC | Unknown | M41L, M184V, L210W, T215Y | A98G | K43E, E44D, K49R, K102R, K122P, D123E, G141A, I142L, I178M, Q197E, R211K, V245M, A272P | |
| CH3 | MR_CH3 | Unknown, D4T, 3TC | Unknown, NVP | M41L, M184V, T215Y | K103N | K32R, V35I, V60I, K122E, I135L, T139R, Q197K, E248D, A272P | |
| CH30 | MR_CH30 | None | None | | | V21I, R83K, K104R, D123E, I135T, D177E, Q207E, R211K, G213E, A272P, K277R | T253A |
| | MR_CH30.1 | None | None | | | V21I, V35I, R83K, K104R, D123E, I135T, K166R, D177E, Q207E, R211K, A272P, K277R | |
| CH31 | MR_CH31 | Unknown, AZT, 3TC | Unknown, EFV | | K103N, P225PH | I31L, V35I, T39A, K122E, I135T, G141A, G196E, R211K, F214L, V245T | |
| CH32 | MR_CH32 | None | None | | | R83K, K101R, D123E, I135L, A272P, K277R | |
| | MR_CH32.1 | AZT, DDI | None | M41L, D67N, L210W, T215Y | | K32Q, V35I, K43N, E44D, K46N, K101R, D123E, I135L, G196E, R211K, A272P, K277R | |
| CH33 | MR_CH33 | None | None | | | E138A, S162C, R172RK, T200A, R211K, A272P | |
| CH34 | MR_CH34 | None | None | | | V35I, R83K, I135T, K166R, R211K, K277R | |
| CH35 | MR_CH35 | Unknown, D4T, 3TC | Unknown, NVP | M41L, M184V, L210W, T215Y | A98G, K103S, G190A | K49R, V60I, R83K, K122E, E169D, R172RK, T200A, Q207E, L228R, A272P | |
| CH36 | MR_CH36 | AZT, 3TC | NVP | M184V, T215Y | Y188H | V35T, T39A, D123E, I142V, G196E, V245I, K277R | |
| CH37 | MR_CH37 | None | None | K70R | | V35K, E36D, D86E, I135C, S162Y, A272P | |
| | MR_CH37.1 | 3TC, DDI | None | K70G, M184V | Y181F | V35K, E36D, T39A, V60I, S68N, V90I, K122KE, I135C, S162Y, H221Y, D250E, A272P | |
| CH38 | MR_CH38 | None | None | | | D121DN, K122E, R172RK, D177E, E194EK, T200A, R211K, V245K, K249Q, D250E | |
| CH39 | MR_CH39 | Unknown, AZT, 3TC | Unknown | M41L, M184V, L210W, T215Y | | V35I, T39A, E44D, R83K, K101Q, K122E, I135K, Q174K, V179I, Q207E, R211K, V245EK | |
| | MR_CH39.1 | Unknown, AZT, 3TC, D4T, DDI | Unknown, EFV | M41L | | D17X, K32Q, V35I, R83K, K101Q, K122E, I135K, Q174R, V179I, Q207E, T215X, V245E, T253X | D218DV |
| CH4 | MR_CH4 | Unknown, AZT, 3TC | Unknown, NVP | V75L | G190A | P14A, V106I, I142V, S162C, P170H, G196E, T200K, K201T, A272P | |
| CH40 | MR_CH40 | None | None | | | K122E, I135T, E138A, T139TI, T165I, Q197P, T200TI, I202V, E204ED, F214L, A272P | |
| CH41 | MR_CH41 | Unknown, D4T, DDI | Unknown, NVP | | | K122E, S134A, I142V, E169D, D177E, I178L, T200K, R211K, F214L, V245Q, A272P, K277R | |
| CH42 | MR_CH42 | None | None | | | K122E, D123N, I135T, I178IM, I202V, D250E, A272P, K277KR | |
| CH43 | MR_CH43 | Unknown, 3TC, DDI | Unknown, EFV | M184MV | K103N | V106I, F214L | |
| CH44 | MR_CH44 | None | None | | | S48T, K122E, R211S, A272P, K277KQ | |
| CH45 | MR_CH45 | None | None | | | K49R, D121Y, K122E, G141A, I142L, S162C, D177E, V245T, E248D, A272S, K277R | |
| CH46 | MR_CH46 | None | None | | V179D | K20R, P55PS, I135LV, S162CY, T200R, E204D, Q207K, R211Q, E248EV | |
| CH47 | MR_CH47 | None | None | | | I135T, D177E, R211K, V245K, A272P | |
| CH48 | MR_CH48 | Unknown, AZT, DDI | Unknown | M41L, D67N, T69D, L210W, T215Y | G190GA | V35I, E44D, K122KE, S134A, I142V, A158S, D177E, R211K, V245Q, D250E | |
| CH49 | MR_CH49 | Unknown, AZT, 3TC | Unknown | M41L, D67N, K70R, M184V, L210W, T215Y, K219E | | K20R, E40K, E44D, V60I, I135T, T200I, I202V, Q207K, R211K, L228H, V245Q, A272P | |
| | MR_CH49.1 | Unknown, AZT, 3TC, D4T, DDI | Unknown, NVP | D67N, K70R, L210W, T215Y, K219E | Y181C, G190A | K20R, E42G, E44G, V60I, K101R, V118I, I135T, Q207K, H208Y, R211K, L228H, V245Q, A272P | M41I, G45R |
| CH5 | MR_CH5 | Unknown, D4T, 3TC | Unknown | M41L, D67N, M184V, T215Y, K219Q | K103N | K122E, D177E, R211A, V245K | |
| CH50 | MR_CH50 | Unknown, AZT, 3TC | Unknown | D67N, K70R, M184V, K219Q | | K122E, I135T, I202V, R211K, F214L, V245Q, A272P | |
| | MR_CH50.1 | Unknown, AZT, 3TC, D4T, DDI | Unknown, EFV | D67N, K70R, T215V, K219Q | L100I, K103N, Y188H | E28K, K65E, K122E, I135T, T200A, I202V, R211K, F214L, H221Y, V245Q, A272P | |
| CH51 | MR_CH51 | Unknown, AZT, DDI | Unknown | D67N, K70R, K219Q | | V35I, S134A, I142V, A158S, D177E, D218E, V245Q, D250E | |
| CH52 | MR_CH52 | Unknown, 3TC, DDI | Unknown | M184V | G190R | V35I, V118I, D123E, I135T, E138A, V179I, T200A, R211K, F214L, A272P, K277R | |
| CH53 | MR_CH53 | None | None | | | I135T, S162C, S163SR, K173KN, K249Q | Q197M |
| | MR_CH53.1 | AZT, 3TC | None | M41L | | I31L, V35R, T39A, I50V, V90X, G141A, I142V, S163T, G196E, L209X, L210M, R211Q, A272S | N54H |
| CH54 | MR_CH54 | None | None | | | V60VI, K104KR, V106VI, V118I, K122KT, D123E, I135T, S163C, D177E, I195IL, T200TAIV, E204N, R211K, F214L | |
| CH55 | MR_CH55 | None | None | | | S48T, D121H, K122E, I135T, D177E, E194EK, R211G, V245E, E248EK | |
| CH56 | MR_CH56 | None | None | | | K20R, V60I, S68G, K101R, D123E, I135T, G196E, V245E, A272P | |
| CH57 | MR_CH57 | None | None | | | I135T, T200A, D250DN | |
| CH58 | MR_CH58 | None | None | L74I | V179D | K122E, I135L, I142T, K173KE, T200A, V245M, A272P | |
| CH59 | MR_CH59 | None | None | | | D121Y, K122E, D177E, R211K, K277R | |
| CH6 | MR_CH6 | Unknown, AZT, 3TC | Unknown | | K103N | V35I, V60I, K122E, I135L, A272P | |
| CH60 | MR_CH60 | Unknown, 3TC, DDI | Unknown, EFV | M184V | V106M, G190A | W88C, K101Q, K122P, D123E, I135T, S162G, D177E, I178V, R211K, F214L, A272P | |
| CH61 | MR_CH61 | Unknown, 3TC, DDI | Unknown, EFV | D67N, K70R, L74V, T215I | K101E, Y181C, G190S | I50T, T69N, V106I, V118I, D123E, I135T, G196E, Q207T, R211K, F214L, K223Q, L228H, K259E, L260V | R206E, H208T, Q258P, V261S |
| CH62 | MR_CH62 | None | None | | | D123E, Q197R, R211K, K277R | |
| CH63 | MR_CH63 | Unknown, AZT, 3TC | Unknown, EFV | M184V | K103N, P225H | E6D, K20R, E28K, K32E, V35I, A98S, I135T, D177E, T200A, Q207E, V245Q, K277R | |
| CH64 | MR_CH64 | None | None | | | K20R, V60I, D121H, K122KE, K166R, N175H, P176T, I178M, T200A, I202V, A272P, K277R | |
| CH65 | MR_CH65 | Unknown, D4T, DDI | Unknown | M41L, M184V, T215Y | | K20R, V35R, K64R, I135T, S162C, I178V, G196EK, T200A, R211G | |
| CH66 | MR_CH66 | None | None | | V179D | I142V, P176S, D177E, Q197K, T200A, I202V, R211A, V245K | |
| CH67 | MR_CH67 | None | None | | | K20R, I135L, S162H, Q174K, D177E, Q207E, V245E | |
| CH68 | MR_CH68 | None | None | | | E6D, V8I, V35T, T39S, K49R, E53D, K122KE, D123E, R172RK, K277R | |
| CH69 | MR_CH69 | None | None | | | V35T, E40D, E42K, V60I, D123E, I135V, D177E, I178L, T200N, R211G, A272P | K13T, S191F |
| CH7 | MR_CH7 | None | None | | | K102Q, K104R, I135AT, I142T, T200I, R211K, V245K, A272P, K277R | |
| CH70 | MR_CH70 | Unknown, AZT, DDI | Unknown | M41L, D67E, L210W, T215Y | | S68G, D86E, V118I, I135T, S162W, R172RK, Q174QK, I178L, T200I, E203EK, Q207DE, R211K, A272P | |
| CH71 | MR_CH71 | None | None | | | K49R, T139A, S162C, D177G, Q207E, R211S, W212G, G213X, L228P | |
| | MR_CH71.1 | AZT, 3TC | None | | V179D | L12X, V35I, T39A, E138A, G141A, R211A, F214L, V245T | |
| CH72 | MR_CH72 | Unknown, ABC, DDI | Unknown | M41L, D67N, K70R, L74LV, M184V, T215F, K219Q | K103S | K20KR, I94L, D177E, G196E, Q197K, H208HY, R211RK, D218E, V245M, A272P, K277R | |
| CH73 | MR_CH73 | Unknown, AZT, 3TC | Unknown, EFV | | K103N, P225H | V35L, I37F, K82R, I94X, I135R, S162C, G196V, T200S, R211K | |
| | MR_CH73.1 | Unknown, AZT, 3TC | Unknown, EFV | | K103N, P225H | V35L, K82R, K101Q, I135KR, S162C, G196V, T200S, R211K | |
| CH74 | MR_CH74 | Unknown, AZT, 3TC | Unknown | | | T27P, K122E, K166R, D177E, R211K, D250E, D256X, G262X, K277X | |
| | MR_CH74.1 | Unknown, AZT, 3TC, D4T, DDI | Unknown, NVP | K70N, L74F | | R78X, K122E, K166R, D177E, R211K, D218G, D250E, K277R | E79G, H96T |
| CH75 | MR_CH75 | Unknown, AZT, DDI | Unknown | L210W, T215Y | | R83K, D121DN, S162H, R172RK, D177E, I178L, E194EK, R199RK, R211A, V245Q, A272P | |
| | MR_CH75.1 | Unknown, AZT, DDI | Unknown | D67H, L210W | K101E | K43E, W88C, V118I, S162H, E169K, D177E, I178L, G196E, R211A, V245Q, A272P | N57I |
| CH76 | MR_CH76 | Unknown, AZT, DDI | Unknown | M41L, D67N, K70R, T215F, K219Q | | E6EA, K20R, V35L, T39A, K43KE, K101Q, K102Q, K104R, D177E, H208Y, R211K, L228H, V245K, A272P | |
| CH77 | MR_CH77 | None | None | | | K32R, V35IM, R83K, I178L, V179I, Q197QE, A272P, K277R | |
| | MR_CH77.1 | D4T, DDI | NVP | M184I | Y181I | K32R, V35I, V60L, T69P, I178L, V179I, V189I, Q197E, A272P, K277R | K13R, K64S |
| CH78 | MR_CH78 | None | None | | | D177E, R211KQ, V245K | |
| CH79 | MR_CH79 | Unknown, D4T, DDI | Unknown, NVP | D67N, T69D, K70R, L74I, T215F, K219Q | K103N, Y181C | V35M, K122E, I135T, I202V, Q207E, R211RK, H221HY | |
| CH8 | MR_CH8 | None | None | | | D123E, T165I, F214L, A272P | |
| | MR_CH8.1 | ABC, AZT, 3TC | None | | | D123E, T165I, F214L, A272P | |
| CH80 | MR_CH80 | None | None | | | E28G, V35I, D123E, I135T, I142V, R211K, F214L, A272P | |
| CH81 | MR_CH81 | None | None | | | K103R, D121Y, K122E, I135T, S162C, G196E, F214L, V245M | |
| CH82 | MR_CH82 | None | None | | | V60I, K103R, K122E, D123N, I135T, I142T, R211K | |
| CH83 | MR_CH83 | None | None | | | E40ED, D121Y, K122E, S162C, E169EG, T200A, V245K, A272P | |
| CH84 | MR_CH84 | Unknown, D4T, DDI | Unknown, NVP | M41L, D67N, K70R, L74LV, T215F, K219Q | K103KN, Y181YC, G190GA | K20R, V35L, V60I, T69N, K104R, I135T, T139K, S162SDGN, I178M, D218E, A272P, K277R | |
| CH9 | MR_CH9 | None | None | | | K122E, I142V, R172RK, R211K, V245K, K249Q, D250E, K277R | |