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Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Santos (2006)
Title Characterization of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil.
Citation AIDS
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 181
NumPts 180
Subtype B, C, F, D, B + F, CRF12_BF

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 181 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
005 005PR_RT None    M36I, N37K, R41N, L63P, H69K, I72V, I93L  
006 006PR_RT SQV 205   P1L, Q2K, G17E, L19I, R57K, D60E, Q61E, L63P, A71T  
012 012PR_RT RTV, IDV 82   I15V, M36I, L63A  
013 013PR_RT NFV 139   G17E, E35D, I62V, L63P  
014 014PR_RT IDV, RTV, NFV, SQV 256 I54V, V82A L24I, L33F, K43T, F53L L10I, I13V, K20R, E35D, M36I, N37E, L63P, A71V, I72T, I93L  
014PR 014PR None  I54V, V82A L24I, L33F, K43T, F53L L10I, I13V, K20R, E35D, M36I, N37E, L63P, A71V, I72T, I93L  
015 015PR_RT None    M36I, N37K, R41N, K45R, H69K, L89M, I93L  
017 017PR_RT IDV, NFV, RTV 183   I15V, L19I, E35D, R57K, I62V, L63P, V82I  
018 018PR_RT NFV, IDV, Unknown, SQV 170   K14R, E35D, N37T, R41K, L63P, H69K  
019 019PR_RT NFV 65   E35D, L63P, I64M, H69K  
020 020PR_RT RTV 261   E35D, L63P, V77I, I93L  
021 021PR_RT None    K14R, I15V, E35D, M36I, L38W, R41K, R57K, Q61N, I62V, L63P, C67Y, L89M  
026 026PR_RT RTV, IDV 82   N37S, L63P, H69K, V77I, I93M  
028 028PR_RT Unknown, RTV, IDV   I15V, N37S, R41K  
036 036PR_RT Unknown, SQV, RTV, LPV 47   I15V, M36I, N37K, R41N, H69K, L89M, I93L  
042 042PR_RT NFV 56   T12S, I15V, M36I, N37K, R41N, H69K, L89M, I93L  
043 043PR IDV 100 V82F  E35D, L63P, I93L  
044 044PR_RT SQV, IDV, RTV, LPV 269 M46I, I54V, I84V, L90M L10F, F53L, G73S I3N, K14R, I15V, K20M, L63P, A71V, I72V, V77I, I85V, I93L  
049 049PR_RT None    I15V, M36I, N37K, R41N, H69K, L89M, I93L  
050 050PR_RT None    T12A, R57K, L63P, V77I, I93L  
051PR 051PR None  I54V, V82A  L10I, K20R, E35D, M36I, N37K, R41N, D60E, L63P, H69K, A71V, T74S, I93L  
052 052PR_RT Unknown, LPV 17   I15V, E35D, L63P  
053 053PR_RT RTV, IDV   T12S, L19I, K43R, L63S, A71V, I72M, I93L  
055 055PR_RT SQV, Unknown, IDV 266   I15V, G17E, K20M, E35D, M36I, L63P, L89I  
058PR 058PR None    I15V, L19V, M36T, N37K, R41N, L63T, H69K, L89M, I93L  
059PR 059PR None  M46I, L76V, V82T  L10R, E35D, R41K, I62V, L63P, I64V, H69K, A71V, I93L  
062 062PR_RT None    G17E, R57K, L63P  
079 079PR_RT NFV 178   K14R, I15V, L19I, L63A, V77I  
088 088PR_RT None    K14R, I15V, N37K, R41N, H69K, L89M, I93L  
091 091PR_RT SQV, IDV, Unknown 183   G17E, L63T, E65D  
092 092PR_RT None    M36I, R41N, H69K, L89M, I93L  
094 094PR_RT NFV, RTV, IDV 148 M46L, L90M  L10V, I13V, K14R, I15V, K20T, N37E, I62V, L63P, I64V, T74S, V75I, I93L  
097 097PR_RT None    L10I, T12P, I13V, K14R, I15V, K20R, M36I, N37K, R41N, H69K, L89M, I93L  
098 098PR_RT LPV 13 I54V, V82T, L90M  L10I, I15V, L19I, K20R, M36I, N37D, K45R, R57K, L63P, A71V, I85V, L89M, I93L  
100 100PR_RT None    M36I, R57K, D60E, L63P  
101 101PR_RT Unknown, NFV 109 M46I, L90M  R41K, W42Y, D60E, I62V, L63P, V77I  
102 102PR_RT None    I62V, L63P  
104 104PR_RT None    I15V, M36I, N37K, R41N, H69K, L89M, I93L  
107 107PR_RT None    I13V, K14R, E35D, N37S, R41K, L63P  
108 108PR_RT None    N37S, I62V, V77I  
110PA 110PA None    I13V, K20R, M36I, N37E, R41N, D60N, L63P, H69K, L89M, I93L  
112 112PR_RT IDV, Unknown, NFV 191   K14R, L19I, N37S, R41K, I64V  
118 118PR SQV, IDV, RTV, APV, LPV 287 G48V, I50V, I54S, V82A L33F, Q58E L10I, I13V, I15V, G16E, K20R, E35D, M36I, N37D, Q61N, L63T, I85V, L89M  
120 120PR_RT None    K14R, I15V, Q18H, L19I, E35D, N37D, R57K, I62V, L63P, G68E, A71T, I72V  
123 123PR IDV 291   I15V, G16E, E35D, M36I, R41K, R57K, Q61N, L89M  
127PR 127PR None    T12S, I15V, K20R, M36I, N37K, R41N, I62V, L63V, H69K, L89I, I93L  
128 128PR_RT Unknown, RTV, SQV, IDV 205   I15V, R57K, Q61N, L63P, C67S, I72T, V77I  
135 135PR IDV, Unknown, RTV 163 I54V, V82A Q58E L10V, K14R, I15V, E35D, M36I, R41K, R57K, Q61N, L63P, L89M  
137 137PR RTV, IDV 61   I13V, N37D, D60E, I62V, L63P  
144 144PR_RT None    E35D, N37D, R41K, I62V, L63P, V77I, L89M, I93L  
145PR 145PR None    K20R, M36I, N37K, R41N, H69K, L89M, I93L  
148 148PR NFV, Unknown 83   L19V, L63P  
172 172 NFV 23   I15V, M36I, N37K, R41N, H69K, L89M, I93L  
205 205 NFV 117   K14R, I15V, G16E, K20R, M36I, N37K, P39S, R41N, H69K, I93L  
B023 B023PR NFV 174 V82A    
B025 B025PR NFV 87   E35D, L63P, V77I  
B031 B031PR IDV, NFV 170 L90M    
B035 B035PR NFV 31   I13V, G17E, E35D, N37S, L63P, H69R, I72V  
B091 B091 None  D30N  Q2E, L10I, N37D, R57K, L63P, V77I, I93L  
B099 B099PR IDV 130   M36I, I62V, L63P, I64L, I72V  
B111 B111PR SQV, NFV 291   E35D, L63P, E65D, K70T, V77I  
B115 B115PR SQV, Unknown, IDV, NFV 161 M46I, I54V, V82A, L90M  T12P, I15V, M36I, N37D, R41K, L63P  
B137 B137PR NFV 108   I13V, M36I, I62V, L63P, I72L  
B138 B138 NFV, IDV 143   T12I, E35D, N37S, L63P, V77I  
B150 B150PR NFV 35   L10V, I15V, M36I, N37E, R57K, L63P, I93L  
BC106 BC106PR NFV   L10V, V11X, I15V, M36I, N37E, R57K, I93X, T96X  
BR1 BR1 SQV, IDV, LPV 139   K14R, I15V, E35D, M36I, P39T, R41K, R57K, Q61N, L89M  
BR2 BR2 IDV, RTV 57   I15V, N37K, R41N, H69K, L89M, I93L  
BR48 BR48 None    I15V, M36I, N37K, R41N, H69K, I93L  
BR49 BR49 SQV, NFV, LPV 255   I15V, M36T, N37K, R41N, H69K, L89M, I93L  
BR50 BR50 None    I15V, M36I, N37K, R41N, H69K, L89M, I93L  
BR52 BR52 NFV, SQV, RTV 199   I15V, N37K, R41N, D60E, H69K, L89M, I93L  
BR53 BR53 RTV, IDV 151 I54V, V82A  L10I, E35D, M36I, R41K, R57K, D60E, Q61N, L63P, I72R  
BR54 BR54 NFV 56   T12A, I13V, G16E, L19I, M36I, N37K, R41N, L63T, H69K, L89M, I93L  
BR58 BR58 NFV 163   I15V, M36I, N37K, R41N, L63P, H69K, I93L  
BR59 BR59 Unknown    T12P, I15V, L19Q, M36I, N37K, R41N, H69K, L89M, I93L  
BR60 BR60 IDV 154 M46I, I54V, V82T L24I, T74P L10I, T12E, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, I62V, L89M  
BR61 BR61 NFV 221   K14R, I15V, M36I, N37K, R41N, L63P, H69K, L89M, I93L  
C073 C073 Unknown    I15V, M36I, N37K, R41N, L63V, H69K, L89M, I93L  
C090 C090 Unknown    Q2S, I3F, I15V, M36I, N37K, R41N, H69K, L89M, I93L  
C125 C125 Unknown    W6L, V11X, T12X, I15V, T26X, T31X, M36I, N37X, L38I, R41N, L63V, H69K, I93L L5R 
c135 c135 Unknown    I15V, M36I, N37K, R41N, H69K, L89M, I93L  
FB103 FB103 IDV 131   T12N, E35D, M36I, R41K, R57K, Q61N, L63I  
FB109 FB109 SQV, RTV, IDV 214 I54V, V82A  L10V, K20R, E35D, M36I, R41K, R57K, D60E, Q61D, L89M  
PA066 PA066 IDV, RTV, Unknown 125   E35D, N37S, R41K, Q61N, I64V  
PA072 PA072 None    I15V, L19I, M36I, N37K, R41N, H69K, V75I, L89M, I93L  
PA110 PA110 None    I13V, K20R, M36I, N37E, R41N, D60N, L63P, H69K, L89M, I93L  
PA124 PA124 None    I15V, M36I, N37K, R41N, D60DE, I62IV, L89M, I93L  
PA130 PA130 None    I15V, L19I, N37K, R41I, D60E, H69K, L89M, I93L  
PA178 PA178 None    K14R, N37T, I62V, L63H, K70T  
PA212 PA212 None  M46I, L90M G73S T4A, I62V, L63P, H69R, I72V, V77I  
PA222 PA222 None    T4X, G16E, E35D, R41K  
PA225 PA225 None  I54V, V82A, L90M K43T, G73S L10I, I15V, K20M, E35D, M36I, N37S, I62V, L63P, A71V, I72K, I85V  
PA227 PA227 None    L10V, I15V, M36I, N37D, L63P, I93L  
PA237 PA237 None  L90M  K20R, R41K, D60E, L63P, V77I  
PA342 PA342 IDV, RTV, LPV 156   L33V, N37S, R41K, I64V, I93L  
PA343 PA343 SQV, RTV, NFV 279 I54V, V82A, L90M  L10I, K20R, E35D, M36I, I62V, L63P, A71V, I72V  
PA365 PA365 SQV, IDV 309   L19V, R57K, I62V, A71T, V77I, I93L  
res037 res037 Unknown    T12P, I15V, L19I, K20R, M36I, N37K, R41N, L63T, H69K, K70R, L89M, I93L  
res079 res079 Unknown  M46I, L90M Q58E I15V, K20M, E35ED, M36IV, N37K, R41N, L63P, H69K, V77X, L89IM, I93L