Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Rousseau (2006)
Title Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes.
Citation J Virol Methods
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 266
NumPts 266
Subtype C, A, B

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 266 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
Pt100 03SK058B2 None    D25E, L101I, T112V, T124N, T125A, K136N, K188R, V201I, L234I, A265V, D278A, S283G  
Pt101 03SK061B1 None    E11Q, V31I, M50I, I72V, I84M, L101I, T112V, T124A, T125A, I135V, K136Q, V201I, I208M, K211Q, T218I, L234I, A265V, R269K, D278A, S283G  
Pt103 03SK065B1 None    K14R, D25E, V31I, I72V, F100Y, L101I, T112V, S119P, S123C, T124A, T125A, K136Q, V201I, A205S, T206S, T218L, D232G, L234I, D253E, K273Q, D278A, S283G I220D 
Pt104 03SK066B1 None    D25E, V31I, M50T, F100Y, L101I, T112V, T124N, T125A, K136N, K188R, V201I, T218I, L234I, D278A, S283G, R284G, D286N A265I 
Pt106 03SK071B1 None    S17N, D25E, L45Q, M50I, I72V, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, E157K, V201I, K215N, T218L, Q221R, L234I, A265V, D278A, S283G G47R, R166G, R224Q, V250A 
Pt107 03SK072B1 None    V31I, M50I, L101I, T112V, T124A, T125V, K136Q, V201I, T218I, L234I, A265V, R269K, M275V, D278A, S283G  
Pt108 03SK073B1 None    S24G, D25E, S39C, M50I, I72V, V79I, P90A, F100C, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, D229G, L234I, R269K, D278A, S283G C40R 
Pt109 03SK076B1 None   F121S S17N, V31I, I84M, Y99H, F100Y, L101I, T112V, T124A, T125A, Y194C, V201I, T206S, K215N, T218I, Q221S, N222K, L234I, S255G, K264R, A265T, K273Q, D278A, S283G  
Pt110 03SK078B1 None    V31I, M50T, I72V, L74I, I84M, E96D, L101I, T112V, T124A, T125A, K136Q, V201I, K215N, T218I, Q221R, L234I, R269K, D278A, S283G  
Pt111 03SK084B1 None    E11D, E13D, A21T, D25E, M50T, A91T, Q95H, F100Y, L101I, T112V, T124N, T125A, K136Q, S195G, V201I, I208L, L234I, D278A, S283G  
Pt114 03SK091B1 None    D25E, V31I, M50I, I72V, P90A, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, A265V, D278A, S283G  
Pt115 03SK092B1 None    S17N, D25E, I84M, F100Y, L101I, T112V, T124S, T125A, G193D, V201I, T218I, L234I, A265V, R269K, K273R, D278A G94R 
Pt116 03SK094B1 None    S17N, D25E, V31I, M50I, I84V, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt117 03SK097B1 None    D25E, V31I, M50T, I72V, F100C, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, D207G, T218I, L234I, A265V, R269K, D278A, S283G  
Pt118 03SK098B1 None  T66A  E10G, K14R, D25E, V31I, M50I, I60V, I72V, E96D, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, I220V, L234I, R269K, D278A, S283G  
Pt119 03SK103B1 None    V31I, M50I, L74I, I84M, Y99F, L101I, T112V, T124A, T125A, K136Q, V201I, A205T, K215N, T218I, R228G, L234I, A265V, R269K, D278A, S283G, D288N R166G 
Pt121 03SK107B1 None    D6E, K14R, D25E, K34R, I72V, L74I, L101I, T112V, I113L, T124A, T125A, H171Q, V201I, T206S, T218I, L234I, D278A, S283G, R284G  
Pt122 03SK110B1 None    S17N, D25E, V31I, L74I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, G163E, V201I, T206S, I208M, T218I, L234I, R269K, D278A, S283G  
Pt123 03SK111B1 None   L68V D25E, V31I, M50I, I72V, I84M, F100Y, L101I, T112V, T124S, T125A, K136Q, D167E, V201I, K211R, K215N, L234I, R269K, D278A, S283G, D286N  
Pt124 03SK112B1 None    V31I, M50I, I72V, L101I, T112V, T124A, T125A, G134S, K136Q, V201I, K215N, L234I, R269K, D278A, S283G  
Pt126 03SK116B1 None    D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, G193D, V201I, T218I, L234I, S255T, A265V, R269K, D278A, S283G  
Pt127 03SK117B1 None    S17N, A21S, D25E, V31I, K34R, M50I, F100Y, L101I, R107G, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, D256E, D278A, S283G, D286G  
Pt128 03SK211B1 None    S17N, L45Q, M50I, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, K160R, V201I, T206S, T218I, I220V, L234I, D278A, S283G  
Pt129 03SK212B1 None   T97A E11D, K14R, S24N, D25E, V31I, M50I, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, D278A, V281A, S283G  
Pt130 03SK213B1 None   V54I I5V, S17N, D25E, V31I, M50I, I60V, I72V, I84M, F100Y, L101I, T112I, T124A, T125A, K136Q, V201I, T206S, T218I, K219Q, L234I, S255G, R269K, D278A, S283G  
Pt132 03SK223B1 None    D25E, V31I, I72V, Q95*, F100Y, L101I, T112V, T124A, T125A, K136Q, I141V, V201I, T218I, L234I, V260I, R269K, D278A, S283G  
Pt135 03SK232B1 None    S24T, D25E, S39C, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, I200V, V201I, K215Q, L234V, I268T, D278A, S283G  
Pt151 04PS190B1 None    M50T, I72V, I84L, F100Y, L101I, T112V, T124A, T125A, K136Q, F181L, V201I, I208M, T218I, L234I, A265V, R269K, D278A, S283G P30L 
Pt159 04PS202B1 None    K14R, N27H, L28I, V31I, L45Q, F100Y, L101I, T112V, S119G, T124A, T125A, K136Q, V201I, K215N, L234I, R269K, D278A, S283G, D286V  
Pt160 04PS204B1 None    S17N, V31I, K34R, M50I, T112V, T124N, T125A, K136Q, M178V, V201I, T218I, L234I, A265V, D278A, D279G, S283G  
Pt161 04PS205B1 None   L74M S17N, V31I, K46R, M50I, I72V, L101I, T112V, T124A, K136Q, K211R, T218I, L234I, A265V, D278A, S283G  
Pt163 04PS208B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A D116G 
Pt165 04PS214B1 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt166 04PS216B1 None    K14R, D25E, V31I, M50I, C56R, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, D232G, L234I, A265V, R269K, D278A, S283G  
Pt169 04SK031B2 None    E11D, D25E, V31I, L45Q, M50I, I72V, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, T218I, L234I, D278A, S283G, D288N  
Pt172 04SK082B1 None    I72V, I84V, F100Y, L101I, T112V, T124A, T125A, K136Q, K156N, R187K, V201I, T218I, L234I, D253E, D278A, S283G  
Pt173 04SK083B2 None    K14R, S24N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, D278A, S283G  
Pt174 04SK128B1 None    D25E, V31I, L45Q, I72V, L74I, F100Y, L101I, T112V, T124A, T125A, K136Q, G163Q, V201I, T218I, L234I, D278A, S283G  
Pt176 04SK131B1 None    K14R, D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G  
Pt177 04SK132B1 None    D25E, M50L, I72V, I84L, F100Y, L101I, T112V, S119T, T124A, T125A, K136H, K188R, Y194C, V201I, A205S, K211R, L234I, A265V, D278A, D286N  
Pt178 04SK133B1 None   T97A K14R, V31I, L101I, T112V, T124A, T125A, K136Q, V180A, V201I, T218I, L234I, R269K, D278A, S283G  
Pt180 04SK137B1 None  Y143H  K14R, A21S, D25E, V31I, K34R, E96G, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, D279G, S283G  
Pt181 04SK139B1 None    K14R, D25E, V31I, K34R, M50T, I72V, I84M, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, K258E, D278A, S283G  
Pt182 04SK140B1 None    S17N, V31I, F100Y, L101I, T112V, T124A, T125A, G193D, S195C, V201I, T218I, L234I, A265V, R269K, K273R, D278A, S283G  
Pt185 04SK145B1 None    K14R, D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, I208L, L234I, A265V, D278A, S283G  
Pt186 04SK146B1 None    S17N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, I208L, T218I, L234I, D278A, S283G  
Pt188 04SK148B1 None    S17N, D25E, M50I, I72V, I84M, F100Y, L101I, T112I, T124A, T125A, K136Q, G163M, V201I, T218I, L234I, A265V, D278A, S283G  
Pt189 04SK151B1 None    D25E, V31I, S39G, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, V281M, S283G, D288N  
Pt191 04SK154B1 None    V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, Q216R, T218I, L234I, A265V, R269K, D278A, S283G  
Pt192 04SK155B1 None    S17N, D25E, V31I, I72V, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, D167E, V201I, T206S, T218I, L234I, A265V, R269K, D278A, S283G  
Pt194 04SK163B1 None    D25E, L45Q, I84M, L101I, T112V, T125A, V201I, T218I, L234I, D278A, S283G  
Pt195 04SK164B1 None    V31I, M50T, I72V, F100Y, L101I, T112V, T125A, K136Q, D167E, V201I, L234I, R269K, D278A, S283G  
Pt198 04SK168B1 None    D25G, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, Q216R, K219Q, L234I, A265V, R269K, D278A, S283G  
Pt200 04SK170B1 None    S17N, M50I, I72V, A91E, F100Y, L101I, T112V, S119R, T124A, T125A, K136Q, K188R, E198G, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt203 04SK173B1 None    D25E, V31I, L45V, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, G163E, V201I, T206A, K215Q, L234I, D278A, S283G, D288N L74P 
Pt204 04SK174B1 None    D25E, V31I, I72V, L74I, F100Y, L101I, T112V, S119T, T125A, K136Q, V201I, T218I, L234I, A265V, D278A, S283G  
Pt206 04SK176B1 None    E11D, S17N, D25E, V31I, M50I, I72V, I84M, F100Y, L101I, T112I, T124A, T125A, V165I, V201I, K211R, T218I, L234I, V260I, A265V, R269K, D278A, S283G  
Pt207 04SK178B1 None    E11D, S24N, D25E, V31I, L45Q, M50I, I72V, I84V, F100Y, L101I, T112V, T124A, T125A, K136Q, G193E, V201I, T218I, L234I, D278A, S283G  
Pt208 04SK180B1 None    D6E, E10D, D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt209 04SK181B1 None    E10G, S17N, V31M, M50I, G59E, I72V, F100Y, L101I, K111T, T112V, T124A, T125A, F181L, V201I, K215N, I220L, Y227F, L234I, A265V, D278A, S283G C40R 
Pt210 04SK182B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, K211Q, T218I, L234I, I251L, A265V, R269K, M275V, D278A, S283G, D286N  
Pt211 04SK183B1 None    D3G, D25E, V31I, M50I, H51Q, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V165I, V201I, T218I, L234I, A265V, D278T, S283G  
Pt212 04SK184B1 None   T66S V31I, M50T, I72V, P90S, F100Y, L101I, T112V, S119P, T124N, T125A, K136Q, V201I, I203M, T218I, I220V, L234I, R269K, D278A, S283G  
Pt213 04SK190B1 None    S24N, D25E, D41G, K46R, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt217 04SK196B1 None    D25E, V31I, S57R, I72V, F100Y, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, A205S, T218I, L234I, A265V, R269K, D278A, S283G  
Pt220 04SK204B1 None    E11D, E13D, D25E, F100Y, L101I, T112V, T124A, T125A, K136Q, T174A, V201I, L234I, A265V, R269K, D278A, S283G  
Pt221 04SK206B1 None    K14R, D25E, V31I, M50I, I72V, V79A, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, S283G, D288N  
Pt222 04SK208B1 None    D25E, M50I, I72V, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt223 04SK217B1 None    E11D, S24N, D25E, V31I, L74I, T112V, I113V, T124A, T125A, V201I, L234I, V260I, V281M A8V 
Pt224 04SK234B1 None    E11D, K14R, D25E, V31I, L101I, T112V, T124A, T125A, K136Q, D167E, E198D, V201I, L234I, V249A, D253E, S283G  
Pt41 03PS077B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A, S283G S24C 
Pt42 03PS079B1 None    D25E, V31I, I72V, I84M, L101I, T112V, T124N, K136Q, D167E, V201I, L234I, A265V, D278A, S283G  
Pt79 03SK006B2 None    D25E, K34R, Q53*, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, D278A, S283G, D286N  
Pt81 03SK010B2 None    K14R, W19*, D25E, V31I, M50R, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A, S283G, R284G, D288N L45E 
Pt82 03SK011B2 None    D25E, L45V, M50I, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, V176I, V201I, L234I, D278A, S283G, E287G E48V, I73L 
Pt86 03SK019B2 None    S17N, L101I, T112V, T124A, T125A, K136Q, V201I, T218L, K219Q, L234I, D278A, S283G  
Pt87 03SK020B2 None    S17N, S24A, V31I, I72V, I84M, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, R187G, V201I, T218I, L234I, A265V, R269K, D278A  
Pt88 03SK023B2 None    R20K, D25E, V31I, M50I, I72V, I84V, Y99H, F100Y, L101I, T112V, T124A, T125A, K136Q, I200V, V201I, T206S, T218I, L234I, A265V, R269K, D278A, S283G  
Pt89 03SK029B2 None    S17N, V31I, M50I, I72V, L101I, K111Q, T112I, T124A, T125A, K136Q, D167E, Q177L, V201I, L234I, A265V, R269K, D278A, S283G  
Pt90 03SK033B2 None    D25E, V31I, I72V, L101I, T112V, T124A, T125A, K136L, K188R, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt91 03SK034B1 None    S17N, D25E, V31I, L45V, M50I, I72V, I84M, P90T, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
Pt92 03SK036B1 None    D6E, R20K, D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, I208L, K211R, T218L, K219Q, L234I, D253E, D278A, S283G  
Pt94 03SK039B2 None    S17N, D25E, V31I, M50I, I72V, L74I, L101I, G106A, T112V, I113V, S119T, T124A, T125A, K136Q, I141V, V201I, T218I, L234I, A265V, D270E, D278A, S283G  
Pt96 03SK041B1 None    S17N, D25E, M50I, I60M, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, D278A, S283G  
Pt98 03SK043B1 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, D207N, K211T, L234I, A265V, R269K, D278S, S283G  
SK-005 03SK005B2 None    D6E, E10D, D25E, V31I, M50I, I72V, F100Y, L101I, T124A, T125A, D167E, V201I, L234I, A265V, R269K, D278A, S283D  
SK-026 03SK026B2 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, A205S, I220L, Y227F, L234I, D278A, S283G  
SK-118 03SK118B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, L234I, D278A, S283G I36M 
SK-120 03SK120B1 None    K14R, D25E, V31I, L45Q, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A, S283G  
SK-127 04SK127B1 None    E11D, D25E, V31I, I72V, L101I, T112V, T124N, T125A, G134S, K136Q, T218I, L234I, A265V, R269K, D278A, S283G A179V 
SK-135 04SK135B1 None    E11D, S24N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D278A, S283G  
SK-136 04SK136B1 None    D6E, S17N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, V201I, T218I, L234I, A265V, S283G  
SK-142 04SK142B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, K160R, V201I, T218I, L234I, A265V, R269K, D278A, S283G R166G 
SK-150 04SK150B1 None    D25E, V31I, L45V, M50I, I72V, I84V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, K219E, L234I, D278A, S283G  
SK-156 04SK156B1 None    K14R, D25E, V31I, M50I, I72V, F100Y, L101I, T112I, T124A, T125A, K136Q, D167E, V201I, T206S, L234I, A265V, R269K, D278A, S283G, R284G  
SK-159 04SK159B1 None    D25E, V31I, L45P, M50I, I72V, T112V, T124A, T125A, K136Q, G163S, V201I, T218I, L234I, D278A, S283G  
SK-160 04SK160B1 None    D25E, N27S, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, T218I, L234I, A265V, D278A, S283G  
SK-161 04SK161B1 None    K14R, D25E, V31I, M50I, F100Y, L101I, T112V, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
SK-185 04SK185B1 None    D25E, M50I, I84M, A91T, F100Y, L101I, T112V, T124A, T125A, K188R, G193R, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G, R284G  
SK-202 04SK202B1 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112I, T124A, T125A, K136Q, V201I, L234I, R269K, D278A, S283G