<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Rousseau (2006)
Title Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes.
Citation J Virol Methods
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 266
NumPts 266
Subtype C, A, B

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 266 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
Pt100 03SK058B2 None    D25E, L101I, T112V, T124N, T125A, K136N, K188R, V201I, L234I, A265V, D278A S283G 
Pt101 03SK061B1 None    E11Q, V31I, M50I, I72V, I84M, L101I, T112V, T124A, T125A, I135V, K136Q, V201I, I208M, K211Q, T218I, L234I, A265V, R269K, D278A S283G 
Pt103 03SK065B1 None    K14R, D25E, V31I, I72V, F100Y, L101I, T112V, S119P, S123C, T124A, T125A, K136Q, V201I, A205S, T206S, T218L, D232G, L234I, D253E, K273Q, D278A I220D, S283G 
Pt104 03SK066B1 None    D25E, V31I, M50T, F100Y, L101I, T112V, T124N, T125A, K136N, K188R, V201I, T218I, L234I, D278A A265I, S283G, R284G, D286N 
Pt106 03SK071B1 None    S17N, D25E, L45Q, M50I, I72V, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, E157K, V201I, K215N, T218L, Q221R, L234I, A265V, D278A G47R, R166G, R224Q, V250A, S283G 
Pt107 03SK072B1 None    V31I, M50I, L101I, T112V, T124A, T125V, K136Q, V201I, T218I, L234I, A265V, R269K, M275V, D278A S283G 
Pt108 03SK073B1 None    S24G, D25E, S39C, M50I, I72V, V79I, P90A, F100C, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, D229G, L234I, R269K, D278A C40R, S283G 
Pt109 03SK076B1 None   F121S S17N, V31I, I84M, Y99H, F100Y, L101I, T112V, T124A, T125A, Y194C, V201I, T206S, K215N, T218I, Q221S, N222K, L234I, S255G, K264R, A265T, K273Q, D278A S283G 
Pt110 03SK078B1 None    V31I, M50T, I72V, L74I, I84M, E96D, L101I, T112V, T124A, T125A, K136Q, V201I, K215N, T218I, Q221R, L234I, R269K, D278A S283G 
Pt111 03SK084B1 None    E11D, E13D, A21T, D25E, M50T, A91T, Q95H, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, I208L, L234I, D278A S195G, S283G 
Pt114 03SK091B1 None    D25E, V31I, M50I, I72V, P90A, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, A265V, D278A S283G 
Pt115 03SK092B1 None    S17N, D25E, I84M, F100Y, L101I, T112V, T124S, T125A, G193D, V201I, T218I, L234I, A265V, R269K, K273R, D278A G94R 
Pt116 03SK094B1 None    S17N, D25E, V31I, M50I, I84V, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt117 03SK097B1 None    D25E, V31I, M50T, I72V, F100C, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, D207G, T218I, L234I, A265V, R269K, D278A S283G 
Pt118 03SK098B1 None  T66A  E10G, K14R, D25E, V31I, M50I, I60V, I72V, E96D, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, I220V, L234I, R269K, D278A S283G 
Pt119 03SK103B1 None    V31I, M50I, L74I, I84M, Y99F, L101I, T112V, T124A, T125A, K136Q, V201I, A205T, K215N, T218I, R228G, L234I, A265V, R269K, D278A R166G, S283G, D288N 
Pt121 03SK107B1 None    D6E, K14R, D25E, K34R, I72V, L74I, L101I, T112V, I113L, T124A, T125A, H171Q, V201I, T206S, T218I, L234I, D278A S283G, R284G 
Pt122 03SK110B1 None    S17N, D25E, V31I, L74I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, G163E, V201I, T206S, I208M, T218I, L234I, R269K, D278A S283G 
Pt123 03SK111B1 None   L68V D25E, V31I, M50I, I72V, I84M, F100Y, L101I, T112V, T124S, T125A, K136Q, D167E, V201I, K211R, K215N, L234I, R269K, D278A S283G, D286N 
Pt124 03SK112B1 None    V31I, M50I, I72V, L101I, T112V, T124A, T125A, G134S, K136Q, V201I, K215N, L234I, R269K, D278A S283G 
Pt126 03SK116B1 None    D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, G193D, V201I, T218I, L234I, S255T, A265V, R269K, D278A S283G 
Pt127 03SK117B1 None    S17N, A21S, D25E, V31I, K34R, M50I, F100Y, L101I, R107G, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, D256E, D278A S283G, D286G 
Pt128 03SK211B1 None    S17N, L45Q, M50I, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, K160R, V201I, T206S, T218I, I220V, L234I, D278A S283G 
Pt129 03SK212B1 None   T97A E11D, K14R, S24N, D25E, V31I, M50I, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, D278A V281A, S283G 
Pt130 03SK213B1 None   V54I I5V, S17N, D25E, V31I, M50I, I60V, I72V, I84M, F100Y, L101I, T112I, T124A, T125A, K136Q, V201I, T206S, T218I, K219Q, L234I, S255G, R269K, D278A S283G 
Pt132 03SK223B1 None    D25E, V31I, I72V, Q95*, F100Y, L101I, T112V, T124A, T125A, K136Q, I141V, V201I, T218I, L234I, V260I, R269K, D278A S283G 
Pt135 03SK232B1 None    S24T, D25E, S39C, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, I200V, V201I, K215Q, L234V, I268T, D278A S283G 
Pt151 04PS190B1 None    M50T, I72V, I84L, F100Y, L101I, T112V, T124A, T125A, K136Q, F181L, V201I, I208M, T218I, L234I, A265V, R269K, D278A P30L, S283G 
Pt159 04PS202B1 None    K14R, N27H, L28I, V31I, L45Q, F100Y, L101I, T112V, S119G, T124A, T125A, K136Q, V201I, K215N, L234I, R269K, D278A S283G, D286V 
Pt160 04PS204B1 None    S17N, V31I, K34R, M50I, T112V, T124N, T125A, K136Q, M178V, V201I, T218I, L234I, A265V, D278A, D279G S283G 
Pt161 04PS205B1 None   L74M S17N, V31I, K46R, M50I, I72V, L101I, T112V, T124A, K136Q, K211R, T218I, L234I, A265V, D278A S283G 
Pt163 04PS208B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A D116G 
Pt165 04PS214B1 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt166 04PS216B1 None    K14R, D25E, V31I, M50I, C56R, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, D232G, L234I, A265V, R269K, D278A S283G 
Pt169 04SK031B2 None    E11D, D25E, V31I, L45Q, M50I, I72V, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, T218I, L234I, D278A S283G, D288N 
Pt172 04SK082B1 None    I72V, I84V, F100Y, L101I, T112V, T124A, T125A, K136Q, K156N, R187K, V201I, T218I, L234I, D253E, D278A S283G 
Pt173 04SK083B2 None    K14R, S24N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, D278A S283G 
Pt174 04SK128B1 None    D25E, V31I, L45Q, I72V, L74I, F100Y, L101I, T112V, T124A, T125A, K136Q, G163Q, V201I, T218I, L234I, D278A S283G 
Pt176 04SK131B1 None    K14R, D25E, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, A265V, R269K, D278A S283G 
Pt177 04SK132B1 None    D25E, M50L, I72V, I84L, F100Y, L101I, T112V, S119T, T124A, T125A, K136H, K188R, Y194C, V201I, A205S, K211R, L234I, A265V, D278A D286N 
Pt178 04SK133B1 None   T97A K14R, V31I, L101I, T112V, T124A, T125A, K136Q, V180A, V201I, T218I, L234I, R269K, D278A S283G 
Pt180 04SK137B1 None  Y143H  K14R, A21S, D25E, V31I, K34R, E96G, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, D279G S283G 
Pt181 04SK139B1 None    K14R, D25E, V31I, K34R, M50T, I72V, I84M, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, K258E, D278A S283G 
Pt182 04SK140B1 None    S17N, V31I, F100Y, L101I, T112V, T124A, T125A, G193D, S195C, V201I, T218I, L234I, A265V, R269K, K273R, D278A S283G 
Pt185 04SK145B1 None    K14R, D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, I208L, L234I, A265V, D278A S283G 
Pt186 04SK146B1 None    S17N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, I208L, T218I, L234I, D278A S283G 
Pt188 04SK148B1 None    S17N, D25E, M50I, I72V, I84M, F100Y, L101I, T112I, T124A, T125A, K136Q, G163M, V201I, T218I, L234I, A265V, D278A S283G 
Pt189 04SK151B1 None    D25E, V31I, S39G, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A V281M, S283G, D288N 
Pt191 04SK154B1 None    V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, Q216R, T218I, L234I, A265V, R269K, D278A S283G 
Pt192 04SK155B1 None    S17N, D25E, V31I, I72V, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, D167E, V201I, T206S, T218I, L234I, A265V, R269K, D278A S283G 
Pt194 04SK163B1 None    D25E, L45Q, I84M, L101I, T112V, T125A, V201I, T218I, L234I, D278A S283G 
Pt195 04SK164B1 None    V31I, M50T, I72V, F100Y, L101I, T112V, T125A, K136Q, D167E, V201I, L234I, R269K, D278A S283G 
Pt198 04SK168B1 None    V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, Q216R, K219Q, L234I, A265V, R269K, D278A D25G, S283G 
Pt200 04SK170B1 None    S17N, M50I, I72V, A91E, F100Y, L101I, T112V, S119R, T124A, T125A, K136Q, K188R, E198G, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt203 04SK173B1 None    D25E, V31I, L45V, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, G163E, V201I, T206A, K215Q, L234I, D278A L74P, S283G, D288N 
Pt204 04SK174B1 None    D25E, V31I, I72V, L74I, F100Y, L101I, T112V, S119T, T125A, K136Q, V201I, T218I, L234I, A265V, D278A S283G 
Pt206 04SK176B1 None    E11D, S17N, D25E, V31I, M50I, I72V, I84M, F100Y, L101I, T112I, T124A, T125A, V165I, V201I, K211R, T218I, L234I, V260I, A265V, R269K, D278A S283G 
Pt207 04SK178B1 None    E11D, S24N, D25E, V31I, L45Q, M50I, I72V, I84V, F100Y, L101I, T112V, T124A, T125A, K136Q, G193E, V201I, T218I, L234I, D278A S283G 
Pt208 04SK180B1 None    D6E, E10D, D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt209 04SK181B1 None    E10G, S17N, V31M, M50I, G59E, I72V, F100Y, L101I, K111T, T112V, T124A, T125A, F181L, V201I, K215N, I220L, Y227F, L234I, A265V, D278A C40R, S283G 
Pt210 04SK182B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124N, T125A, K136Q, V201I, K211Q, T218I, L234I, I251L, A265V, R269K, M275V, D278A S283G, D286N 
Pt211 04SK183B1 None    D3G, D25E, V31I, M50I, H51Q, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V165I, V201I, T218I, L234I, A265V, D278T S283G 
Pt212 04SK184B1 None   T66S V31I, M50T, I72V, P90S, F100Y, L101I, T112V, S119P, T124N, T125A, K136Q, V201I, I203M, T218I, I220V, L234I, R269K, D278A S283G 
Pt213 04SK190B1 None    S24N, D25E, D41G, K46R, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt217 04SK196B1 None    D25E, V31I, S57R, I72V, F100Y, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, A205S, T218I, L234I, A265V, R269K, D278A S283G 
Pt220 04SK204B1 None    E11D, E13D, D25E, F100Y, L101I, T112V, T124A, T125A, K136Q, T174A, V201I, L234I, A265V, R269K, D278A S283G 
Pt221 04SK206B1 None    K14R, D25E, V31I, M50I, I72V, V79A, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V S283G, D288N 
Pt222 04SK208B1 None    D25E, M50I, I72V, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt223 04SK217B1 None    E11D, S24N, D25E, V31I, L74I, T112V, I113V, T124A, T125A, V201I, L234I, V260I A8V, V281M 
Pt224 04SK234B1 None    E11D, K14R, D25E, V31I, L101I, T112V, T124A, T125A, K136Q, D167E, E198D, V201I, L234I, V249A, D253E S283G 
Pt41 03PS077B1 None    S24C, D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt42 03PS079B1 None    D25E, V31I, I72V, I84M, L101I, T112V, T124N, K136Q, D167E, V201I, L234I, A265V, D278A S283G 
Pt79 03SK006B2 None    D25E, K34R, Q53*, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, D278A S283G, D286N 
Pt81 03SK010B2 None    K14R, W19*, D25E, V31I, M50R, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A L45E, S283G, R284G, D288N 
Pt82 03SK011B2 None    D25E, L45V, M50I, F100Y, L101I, T112V, T124N, T125A, K136Q, G163E, V176I, V201I, L234I, D278A E48V, I73L, S283G, E287G 
Pt86 03SK019B2 None    S17N, L101I, T112V, T124A, T125A, K136Q, V201I, T218L, K219Q, L234I, D278A S283G 
Pt87 03SK020B2 None    S17N, S24A, V31I, I72V, I84M, F100Y, L101I, T112V, S119P, T124A, T125A, K136Q, R187G, V201I, T218I, L234I, A265V, R269K, D278A  
Pt88 03SK023B2 None    R20K, D25E, V31I, M50I, I72V, I84V, Y99H, F100Y, L101I, T112V, T124A, T125A, K136Q, I200V, V201I, T206S, T218I, L234I, A265V, R269K, D278A S283G 
Pt89 03SK029B2 None    S17N, V31I, M50I, I72V, L101I, K111Q, T112I, T124A, T125A, K136Q, D167E, Q177L, V201I, L234I, A265V, R269K, D278A S283G 
Pt90 03SK033B2 None    D25E, V31I, I72V, L101I, T112V, T124A, T125A, K136L, K188R, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt91 03SK034B1 None    S17N, D25E, V31I, L45V, M50I, I72V, I84M, P90T, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
Pt92 03SK036B1 None    D6E, R20K, D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T206S, I208L, K211R, T218L, K219Q, L234I, D253E, D278A S283G 
Pt94 03SK039B2 None    S17N, D25E, V31I, M50I, I72V, L74I, L101I, G106A, T112V, I113V, S119T, T124A, T125A, K136Q, I141V, V201I, T218I, L234I, A265V, D270E, D278A S283G 
Pt96 03SK041B1 None    S17N, D25E, M50I, I60M, F100Y, L101I, T112V, T124A, T125A, K136Q, K188R, V201I, T218I, L234I, A265V, D278A S283G 
Pt98 03SK043B1 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, D207N, K211T, L234I, A265V, R269K, D278S S283G 
SK-005 03SK005B2 None    D6E, E10D, D25E, V31I, M50I, I72V, F100Y, L101I, T124A, T125A, D167E, V201I, L234I, A265V, R269K, D278A S283D 
SK-026 03SK026B2 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112V, S119T, T124A, T125A, K136Q, V201I, A205S, I220L, Y227F, L234I, D278A S283G 
SK-118 03SK118B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, L234I, D278A I36M, S283G 
SK-120 03SK120B1 None    K14R, D25E, V31I, L45Q, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, R269K, D278A S283G 
SK-127 04SK127B1 None    E11D, D25E, V31I, I72V, L101I, T112V, T124N, T125A, G134S, K136Q, T218I, L234I, A265V, R269K, D278A A179V, S283G 
SK-135 04SK135B1 None    E11D, S24N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, D278A S283G 
SK-136 04SK136B1 None    D6E, S17N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, V201I, T218I, L234I, A265V S283G 
SK-142 04SK142B1 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, K160R, V201I, T218I, L234I, A265V, R269K, D278A R166G, S283G 
SK-150 04SK150B1 None    D25E, V31I, L45V, M50I, I72V, I84V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, K219E, L234I, D278A S283G 
SK-156 04SK156B1 None    K14R, D25E, V31I, M50I, I72V, F100Y, L101I, T112I, T124A, T125A, K136Q, D167E, V201I, T206S, L234I, A265V, R269K, D278A S283G, R284G 
SK-159 04SK159B1 None    D25E, V31I, L45P, M50I, I72V, T112V, T124A, T125A, K136Q, G163S, V201I, T218I, L234I, D278A S283G 
SK-160 04SK160B1 None    D25E, N27S, V31I, I72V, F100Y, L101I, T112V, T124A, T125A, K136Q, D167E, K188R, V201I, T218I, L234I, A265V, D278A S283G 
SK-161 04SK161B1 None    K14R, D25E, V31I, M50I, F100Y, L101I, T112V, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A S283G 
SK-185 04SK185B1 None    D25E, M50I, I84M, A91T, F100Y, L101I, T112V, T124A, T125A, K188R, G193R, V201I, K211R, T218I, L234I, A265V, R269K, D278A S283G, R284G 
SK-202 04SK202B1 None    D25E, V31I, M50I, I72V, F100Y, L101I, T112I, T124A, T125A, K136Q, V201I, L234I, R269K, D278A S283G