Protease Inhibitors

HOME Genotype-Rx Genotype-Pheno Genotype-Clinical hivdb program

Protease Inhibitors

Subtype	D
Gene	PR
Mutation	L63P
Rx	PI-naive
IncludeMixtures	No

References	114
Patients	470
Isolates	479

Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr)	Patient	Isolate	Acc#	PIs	PIMinorDRMs	OtherMut	Subtype
Alizon (1986)	ELI	ELI	K03454	None		T12A, R41K, L63P, H69Q	D
Cornelissen (1997)	92UG001	92UG001	AF009395	None		E35D, M36I, R41K, L63P, H69Y, V77I	D
Gao (1998)	94UG114	94UG114	U88824	None		L10V, I13V, M36I, R41K, L63P, I64L	D
Tanuri (1999)	BRAM-24	BRAM-24	AF076445	None		E35D, N37S, R41K, L63P, I64L	D
Nkengasong (2000)	JN_IC0068	JN_IC0068	AF216978	None		I13V, M36I, L38M, R41K, R57K, Q61N, L63P, I64V	D
Vergne (2000)	LVMP976	LVMP976	AJ286969	None	Q58E	I15V, G16E, E35D, M36I, N37E, P39S, R41K, D60E, L63P	D
Eshleman (2001)	SE830	SE830	AF388163	None		E35D, M36I, R41K, K45R, I62IV, L63P, I64L, H69Y, V77I	D
	SE618	SE618	AF388153	None		I13V, R41K, D60DE, L63P, H69HY, I72IV, V77VI	D
	SE549	SE549	AF388149	None		L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64V	D
	SE494	SE494	AF388143	None		I13V, R41K, D60E, L63P, C67S	D
	SE414	SE414	AF388141	None		I13V, E35D, M36I, P39Q, R41K, K45R, R57K, L63P, H69K, L89M	D
	SE887	SE887	AF388134	None	L89LV	I13V, I15V, M36I, R41K, L63P, I64L	D
	SE43	SE43	AF388066	None		I13V, R41K, L63P, H69CY, I72IT	D
	SE33	SE33	AF388065	None	I50IF, L76I	I13V, M36I, R41K, L63P, I64V, A71T, I72IV, V77I	D
Yahi (2001)	NY_M40	M40	AY010404	None		E35D, M36I, R41K, R57RK, L63P, I64V, I93L	D
Cuevas (2002)	CU94	CU94	AF425475	None		K20R, E35D, M36I, R41K, K43R, L63P, H69Q	D
	CU73	CU73	AF425454	None		K14R, L19I, E35D, M36I, N37D, R41K, K43R, Q61D, L63P, H69Q, I93L	D
	CU71	CU71	AF425452	None		L10I, K14R, R41K, K43R, L63P, I64L, H69Q	D
	CU67	CU67	AF425448	None		I13V, K20R, M36I, N37D, R41K, K43R, L63P, H69Q	D
	CU65	CU65	AF425446	None		E35D, M36I, N37D, R41K, K43R, L63P, I64L, H69Q, K70R, A71T, I72V	D
	CU64	CU64	AF425445	None		E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69Q	D
	CU62	CU62	AF425443	None		Q18L, R41K, K43R, L63P, H69Q	D
	CU61	CU61	AF425442	None	T74P	K20R, E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69Q	D
	CU60	CU60	AF425441	None		I13V, K14R, G16E, K20M, E35D, M36I, R41K, K43R, L63P, H69Q, L89M	D
	CU45	CU45	AF425426	None		L10I, I13V, K20I, E35D, M36I, R41K, K45R, L63P, H69Q, L89M	D
	CU40	CU40	AF425421	None		I13V, K20R, M36I, R41K, K43R, Q61E, L63P, H69Q	D
	CU38	CU38	AF425419	None		I13V, R41K, L63P, H69Q, V77I	D
	CU31	CU31	AF425412	None		E35D, M36I, R41K, K43R, L63P, H69Q	D
	CU30	CU30	AF425411	None		R41K, K43R, R57K, I62V, L63P, H69Q, A71T, V77I, I93L	D
	CU29	CU29	AF425410	None		E35D, M36I, R41K, K43R, D60E, L63P, H69Q	D
	CU23	CU23	AF425404	None		L5Q, I15V, E35D, M36I, N37D, R41K, K43R, D60E, L63P, H69Q	D
	CU17	CU17	AF425398	None		T12K, L19I, E35D, M36I, R41K, L63P	D
	CU8	CU8	AF425389	None		K20R, E35D, M36I, N37D, R41K, K43R, L63P, H69Q, V77I	D
	CU7	CU7	AF425388	None		E35D, M36I, R41K, K43R, L63P, H69Q	D
Dowling (2002)	KSM4001	KSM4001	AF457072	None		I13V, N37S, R41K, L63P, I64L, K70R	D
	KER2003	KER2003	AF457051	None		R41K, L63P, I64L	D
Dumans (2002)	AD-52	AD-52	AF413818	None		L63P, I64V	D
Eshleman (2002)	123108n	123108n	AF410208	None		I13V, R41K, L63P, H69Y, I72V	D
	124661e	124661e	AF410212	None		I13V, M36I, R41K, L63P	D
	131226r	131226r	AF410219	None		I13V, K14R, R41K, L63P, I64L	D
	139339y	139339y	AF410234	None		I13V, K14KR, N37ND, R41K, L63P, E65D, K70R, A71AT, I72IT, V77VI	D
	139367i	139367i	AF410235	None		I13V, R41K, L63P, I72M, V75I	D
	147143w	147143w	AF410247	None		I13V, M36I, R41RK, L63P, H69HY	D
	147607q	147607q	AF410249	None		T12A, I13V, R41K, D60E, L63P, V77VI	D
	148154f	148154f	AF410250	None		I13V, K20R, M36I, R41K, I62V, L63P, I64L	D
Fonjungo (2002)	CM11	CM11	AF406731	None	L33I	E35D, M36I, R41K, L63P, I64M, H69Y, I72T, I93L	D
	CM238	CM238	AF406728	None		I15V, L19Q, E35D, M36I, L63P, H69Q, I93L	D
	CM221	CM221	AF406722	None		I15V, E35D, M36I, R41K, L63P, I93L	D
	CM145	CM145	AF406712	None		L10V, I15V, E35D, M36I, R41K, L63P, H69Q, I93L	D
Gibb (2002)	DMG112	112_w-38		None		R41K, I62IV, L63P, C67CS, V77VI	D
	DMG19	19_w0		None		R41K, D60E, L63P, I64IV, H69Q, V77VI	D
Hierholzer (2002)	SU488	SU488	AY102484	None		I13V, I15V, G16E, N37T, P39S, R41K, D60E, L63P, A71T, I93L	D
	SU502	SU502	AY102485	None		I15V, P39A, R41K, L63P, I72V, I93L	D
	SU510	SU510	AY102487	None		T12S, I13V, L19I, L33V, N37T, P39S, R41K, L63P, I64V, E65D, H69Y	D
	SU049	SU049	AY102492	None		I13V, L33V, N37T, P39S, R41K, D60E, L63P, I64V, H69Y	D
	SU245	SU245	AY102501	None		I13V, R41K, I62V, L63P, I64V, H69Y	D
Pandrea (2002)	IP_97CIRMF05	97CIRMF05	AY140619	None		I3L, L10I, R41K, L63P, I64L, C67S, H69Q, I72V, V77I	D
Vergne (2002)	LV19	LV19	AJ313419	None	L33I	Q18L, L19I, E35D, M36I, P39S, R41K, Q61H, L63P, H69Y, I72V	D
Brindeiro (2003)	BRP2119	BRP2119	AY213401	None		L10V, G16E, P39S, I62V, L63P, I72V	D
Shafer (2003)	A384_0303	0303a	EF548190	None		I13V, R41K, L63P, I64IV, H69Y, I72IV	D
Vidal (2003)	99TCDMN011	99TCDMN011	AJ488926	None		I15V, L19Q, E35D, M36I, R41K, D60E, L63P, I64V, K70T, I72V	D
	HIM519488	HIM519488	AJ519488	None		I15V, L19Q, E35D, M36I, R41K, D60E, L63P, I64V, K70T, I72V	D
Eshleman (2004)	SE549	SE549_7d	AY428693	None		L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64V	D
	SE13	SE13_7d	AY428670	None		I13V, R41K, L63P, H69CY, I72IT	D
Eshleman (2004)	ESH_Pat32	ESH695	AY435330	None		T12TA, I13V, K14KR, R41K, L63P, H69Y	D
	ESH_Pat34	ESH698	AY425354	None		T12A, K14R, R41K, L63P, H69Q, V77VI, I93L	D
Eshleman (2004)		SE698_7d	AY428709	None		T12A, K14KR, R41K, Q61QE, L63P, H69Q, V77VI, I93IL	D
Eshleman (2004)	ESH_Pat47	ESH626	AY435323	None		I13V, L24LF, M36I, R41K, R57K, L63P, C67Y	D
	ESH_Pat72	ESH708	AY435341	None		I13V, E35D, N37D, R41K, R57RK, D60E, L63P, I64V, K70KR, I72L	D
	ESH_Pat78	ESH780	AY435360	None		I13V, M36MI, R41K, L63P, I64V	D
	ESH_Pat104	ESH218	AY435246	None		I13V, K20KR, M36L, R41K, K43KR, L63P, I64V, K70KR, I72V, V77I	D
	ESH_Pat138	ESH9	AY435221	None		I13V, M36I, N37ND, R41K, D60E, L63P, I64V, G68GE	D
Eshleman (2004)		SE9_7d	AY428669	None		I13V, M36I, N37ND, R41K, D60E, L63P, I64V	D
Eshleman (2004)	ESH_Pat139	ESH517	AY435295	None		T12P, I13V, R41K, L63P, I64V, I72M, V77I	D
	ESH_Pat165	ESH815	AY435362	None		I13V, M36I, P39AS, R41K, D60E, I62V, L63P, I64V	D
Eshleman (2004)	ABB208	ABB208	AY444271	None		E35D, M36I, R41K, I62V, L63P, H69Q	D
Fang (2004)	ML249_3_1997	249_3_1997	AY322187	None		L19I, M36I, R41K, L63P	D
Grossman (2004)	17745Pr115	17745Pr115	AY529625	None		G16E, K20R, M36I, P39S, R41K, D60E, I62V, L63P	D
Gulick (2004)	RG224	RG224w0		None		L10V, T12I, I13V, N37D, L63P, I93L	D
	RG36	RG36w172		None		I13L, G16GE, P39S, R41K, D60E, I62V, L63P, I64V	D
Kijak (2004)	0009BBY	01CM.0009	AY371155	None		I15V, E35D, M36I, R41K, I62V, L63P, H69Q	D
	0175BA	01CM.0175	AY371156	None		I15V, E35D, M36I, R41K, L63P, H69Q	D
	4412HAL	01CM.4412	AY371157	None		E35D, M36I, R41K, L63P, H69Q	D
Konings (2004)	KF_Pat3	00CM4869	AY359685	None		L10V, E35D, R41K, L63P	D
	KF_Pat6	00CM1457	AY359688	None		L10V, I15V, E35D, M36I, R41K, L63P, H69Q, I93L	D
	KF_Pat7	00CM1705	AY359689	None		T12S, E35D, M36I, R41K, D60E, I62V, L63P, H69Q	D
Servais (2004)	SJ_Pat25	SJKLM007	AJ412934	None		K14R, L19I, M36I, R41K, L63P	D
Shi (2004)	pWCML249	pWCML249	AY445524	None		L19I, R41K, L63P	D
Snoeck (2004)	BE28	BE28	AY900735	None		E35D, M36I, R41K, R57K, Q61H, L63P	D
Yang (2004)	97KE004	97KE004	AY492752	None		I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89M	D
	97KE047	97KE047	AY492768	None		Q7R, R8L, I13V, K14R, T31P, R41K, L63P	D
	00KE558	00KE558	AY492775	None		R8G, P9G, L10P, I13V, M36I, R41K, L63P, I64L, H69Q, I72V	D
	99KE577	99KE577	AY492779	None		R8L, I13V, R41K, L63P, K70R	D
	99KE593	99KE593	AY492788	None		I13V, R41K, L63P, I64V	D
Casado (2005)	CU7	CU7	AY894994	None		E35D, M36I, R41K, K43R, L63P, H69Q	D
	Cu64	Cu64	AY894995	None		E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69Q	D
Grossman (2005)	17145	17145PR424		None		G16E, K20R, M36I, P39S, R41K, D60E, I62V, L63P	D
K'Aluoch (2005)	OK_TC021304	TC021304	DQ079836	None	Q58E	I13V, M36I, R41K, L63P	D
	OK_TC010103	TC010103	DQ079845	None		I13V, L33LV, R41K, D60E, Q61E, L63P	D
	OK_TC008403	TC008403	DQ079850	None		R41K, L63P, V77VI	D
	OK_TC007703	TC007703	DQ079854	None		L10IV, I13V, M36I, P39S, R41K, I62V, L63P, I64V	D
	OK_TC007103	TC007103	DQ079855	None		I13V, K20R, M36I, R41K, R57K, L63P, I64V, H69Y, I72V	D
Non-B Workgroup (2005)	UK4834	UK4834		None		I13V, K20R, M36I, R41K, L63P, I64V, H69Y, I72V, V77I	D
	UK4902	UK4902	AY901225	None		I13V, K14KR, R41K, D60E, L63P, H69N, V77I	D
Weber (2005)	F86075	F86075	AY677412	None		I13V, R41K, L63P	D
	01F8686	01F8686	AY677486	None		I13V, K14R, I15V, M36I, R41K, I62V, L63P, I64V	D
Saad (2006)	MDS_01UAKV176	01UAKV176	DQ055205	None		T12P, I13V, E35D, R41K, L63P, I64V	D
	MDS_02UAKV185	02UAKV185	DQ055311	None		T12P, I13V, E35D, R41K, L63P, I64V	D
Tebit (2006)	A543	A543	DQ682729	None		L10V, I15V, L19T, L38V, R41K, R57K, Q61H, L63P, V77I	D
Vergne (2006)	LV_02CM-CK1_18	02CM-18	AM181793	None	Q58E	L10V, E35D, M36IL, N37E, R41K, R57K, D60T, Q61D, L63P, H69Q	D
	LV_02CM-CK1_2	02CM-2	AM181792	None		E35D, M36I, R41K, R57RK, D60E, L63P, H69C	D
Vidal (2006)	NV_KIST132	02.KIST132	AM041030	None		I13V, K20R, M36I, R41K, I62V, L63P, C67Y, K70R	D
	NV_KS075	02.KS075	AM041009	None		I15V, R41K, L63P, I72T	D
	NV_KSS006	02.KSS006	AM041047	None		T4S, I13V, L19I, K20R, E35D, N37D, D60E, L63P, I72V, V77I	D
	NV_LBFE012	02.LBFE012	AM041003	None		T12S, I15V, L19I, M36I, R41K, I62V, L63P, H69Y	D
	NV_MBFE252	02.MBFE252	AM041024	None		E35D, M36I, R41K, R57K, Q61H, I62V, L63P, H69N, I93L	D
Baker (2007)	9593OA	02-9593OA	AY803465	None		I15V, L19A, M36I, R41K, L63P	D
	6580SP	03-6580SP	AY803466	None		K14R, M36I, R41K, L63P, I64V	D
	TC0257	TC025704	AY803487	None		T12S, I13V, K14R, I15IV, M36I, R41K, L63P, I72V	D
	P0062	P0062-070305	EF186139	None		I13V, M36I, R41K, L63P, I64IV	D
	A1040	MBA1040-190905	EF186213	None		I13V, K20R, M36I, P39T, R41K, L63P, A71V, I93L	D
	A1055	MBA1055-261005	EF186219	None		I13V, R41K, L63P, I64V, H69Y, I72E, V77I	D
	AR006	MBAR006-120405	EF186222	None		I13V, R41K, D60E, L63P, I64V	D
Brumme (2007)	1075	PR_1075	EF368385	None		L33V, N37T, P39S, R41K, Q61HY, L63P, I64V, H69Y	D
	1101	PR_1101	EF368411	None	D30DE	I13IV, L33V, N37NH, P39PS, R41K, I62IV, L63P, H69Y, I72IV	D
Church (2007)	009-107995N	009	EF611992	None		I13V, M36I, R41K, D60E, L63P, I64V, V77VI	D
	043-110304r	043	EF612000	None		I13V, R41K, L63P, H69CY, I72IT	D
	218-118871V	218	EF612016	None		I13V, K20KR, M36L, R41K, K43KR, L63P, I64V, K70KR, I72V, V77I	D
	494-127521w	494	EF612044	None		I13V, G16A, R41K, D60E, L63P, C67S	D
	517-129070G	517	EF612054	None		T12P, I13V, R41K, L63P, I64V, I72M, V77I	D
	618-133703t	618	EF612083	None		I13V, R41K, D60DE, L63P, C67S, H69HY, I72IV, V77I	D
	626-134055S	626	EF612088	None		I13V, M36I, R41K, R57K, L63P, C67Y	D
	695-137452V	695	EF612110	None		T12TA, I13V, K14KR, R41K, L63P, H69Y	D
	698-134930N	698	EF612112	None		T12A, K14R, R41K, L63P, H69Q, V77VI, I93L	D
	708-136157U	708	EF612118	None		I13V, E35D, N37D, R41K, R57RK, D60E, L63P, I64V, K70KR, I72L	D
	780-141912B	780	EF612143	None		I13V, M36MI, R41K, L63P, I64V	D
	804-145242E	804	EF612152	None		I13V, R41K, L63P, I64V	D
	815-145489E	815	EF612157	None		I13V, M36I, P39A, R41K, D60E, I62V, L63P, I64V	D
	830-145979q	830	EF612162	None		P1PS, E35D, M36MI, R41K, K45KR, I62IV, L63P, I64L, H69HY, V77I	D
	887-148290B	887	EF612182	None	L89LV	I13V, I15V, M36I, R41K, L63P, I64L	D
Galluzzo (2007)	M22900	UG_M22900	JQ220085	None		I13V, E35D, M36I, R41K, L63P, I64L, F99FL	D
	M22840	UG_M22840	JQ220097	None		I13V, M36I, R41K, R57K, D60E, L63P, I64V, I72V	D
	M21430	UG_M21430	JQ220141	None	L33LI	I13V, G17D, R41K, L63P, H69Y	D
	M22620	UG_M22620	JQ220145	None		I13V, N37NS, R41K, L63P, I64V, H69Y	D
Holguin (2007)	614034	614034	EF583265	None	L10LF	T12P, I13IV, K14R, L19LP, K20KM, E35D, M36MI, R41K, K43KR, L63P, H69HQ, K70KE, A71AT, L89LM, I93IL	D
Varella (2007)	29ini	29ini		None		T12E, K14R, E35D, M36I, R41K, D60E, Q61E, L63P	D
Vidal (2007)	U0106	U0106	AM260218	None		I13V, N37T, R41K, L63P, K70R	D
	U1929	02BU.U1929	AM260231	None		I13V, R41K, L63P, H69K, A71T, V77I	D
von Wyl (2007)	52	10324616	EF449795	None		K14R, P39S, R41K, D60E, Q61E, I62V, L63P, A71V, I72M, V77I, P79Q, I93L	D
		5511940	EF449922	None		K14R, P39S, R41K, D60E, Q61E, I62V, L63P, A71V, I72V, V77I, P79Q, I93L	D
Caron (2008)	1345	Gab1345P	EU556459	None	L33I	E35N, M36I, R41K, Q61H, L63P, K70E, I72V	D
Church (2008)	414210P	414210P	EU380758	None		I13V, E35D, R41K, K43R, L63P, I64V, H69Y	D
	461597R	461597R	EU380765	None		I13V, R41K, R57K, L63P, I64V, H69Y, V77I	D
Holguin (2008)	SP17-340928	SP17-340928	EU255320	None		L10V, I13V, K14R, R41K, R57K, L63P, I64V	D
	SP27-289350	SP27-289350	EU255400	None		L10V, I13IV, E35D, N37H, R41K, I62V, L63P, A71T	D
	SP4-341752	SP4-341752	EU255489	None		I15V, E35D, M36I, R41K, R57K, L63P	D
Ibe (2008)	148	148	AB356197	None		L10I, I13V, M36IL, N37D, R41I, R57RK, D60E, L63P, I64V, K70R	D
Ndembi (2008)	IAEM010	IAEM010	EU306749	None		I13V, M36I, R41K, L63P	D
	IAEM011	IAEM011	EU306750	None		I13V, L19I, M36I, N37D, R41K, D60G, I62V, L63P, I64V, C67S, K70R	D
	IAEAM021	IAEAM021	EU306758	None		I13V, N37S, R41K, D60E, L63P, I64V, K70T, V77I	D
	IAEM030	IAEM030	EU306762	None		I13V, E35D, M36I, N37T, R41K, L63P	D
	IAEM057	IAEM057	EU306780	None		I13V, L33V, R41K, L63P, I64M	D
Nyombi (2008)	TBK029	TBK029	EU251732	None		I13IV, K20KR, E35D, N37S, R41K, L63P, V75I	D
	TBK074	TBK074	EU251761	None		T12A, I13V, K14R, E35D, M36I, R41K, R57K, D60E, I62V, L63P, I64V, H69Y, I72V	D
	TBK088	TBK088	EU251771	None		I13V, R41K, L63P, H69Y	D
	TMS203	TMS203	EU251840	None		I13V, I15V, G16E, P39T, R41K, I62V, L63P, I64V, V77I	D
	TMS220	TMS220	EU251853	None		L10V, I13V, E35D, P39Q, R41K, D60E, L63P, I64V, H69K, A71T, V77I	D
	TMS323	TMS323	EU251869	None		E35D, N37S, R41K, L63P	D
Riddler (2008)	RG56600	RG56600w67		None		M36I, R41K, L63P, K70R	D
Somi (2008)	BG-05-896	BG-05-896	JQ616953	None		M36I, P39T, R41K, I62V, L63P, I64L, A71T	D
Aghokeng (2009)	CYM041	CYM041	GU191591	None		L10LI, T12TP, K14KR, E35D, M36I, R41K, L63P, H69Q	D
Bartolo (2009)	HDC238	01AOHDC238	EU068230	None		I13V, E35N, R41K, D60E, L63P	D
	HJM113	01AOHJM113	EU068251	None		R41K, L63P, K70R	D
	HM176	01AOHM176	EU068319	None		G17E, M36I, R41K, L63P, H69HR	D
Brumme (2009)	A2508	A2508	GQ371768	None		I13V, Q18L, M36I, I62V, L63P, A71V, I93L	D
Cuevas (2009)	X2713_1	X2713_1	GU326183	None		Q18H, M36I, Q61E, L63P, I64V, I72V, I93L	D
Eshleman (2009)	B03497W2	07-156906	FJ389060	None		I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V	D
	B20757W3	07-156919	FJ389063	None		I13V, L33V, R41K, I62V, L63P, I64V, E65D, K70R	D
	K39436W2	07-156978	FJ389084	None		I13V, R41K, L63P, I64V, H69Y	D
	H30633W1	07-156985	FJ389091	None		I13V, I15V, N37D, R41K, D60E, L63P, H69Y	D
	C03919W2	07-156988	FJ389093	None		I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V	D
	A40697W2	08-101505	FJ389109	None		I13V, M36I, R41K, L63P, I64IV	D
	J49527R9	08-101550	FJ389119	None		I13IV, M36MI, R41K, R57RK, L63P, I64V, K70R, V77I	D
	K13286W3	08-101560	FJ389120	None		I13V, M36I, R41K, L63P	D
	A06734R9	08-102647	FJ389138	None		I13V, K20I, M36I, R41K, L63P, I64V, E65D	D
	B05421W3	08-102650	FJ389141	None		R41K, R57K, D60E, I62V, L63P, A71AT, I72L, V77I, Q92QR	D
Fujisaki (2009)	60	60	AB442247	None		I13V, G17GE, M36I, N37D, R41K, D60E, I62IV, L63P, I64V, K70R	D
Koyalta (2009)	30	TCHAD-30	FJ688183	None		M36I, N37D, R41K, D60E, I62V, L63P, I64V, C67S	D
Mintsa-Ndong (2009)	MKK227	MKK227	AM903429	None		L19I, R41K, K45KR, L63P, I64L, H69HQ, V77I	D
Nadai (2009)	CRC08656	CRC08656	EU439750	None		I13V, N37S, R41K, D60E, I62V, L63P, I72M, V77I	D
	CRC50069	CRC50069	EU839608	None		K14R, R41K, D60E, L63P, I72V, V77I	D
Steegen (2009)	BV232	BV232-1	EU872131	None	L33I	I13V, L19IV, K20KM, M36I, R41K, K43KR, R57K, Q61E, L63P, I64V, E65ED, I72IV, I93L	D
Vercauteren (2009)	pt2185	108155411	GQ398839	None		Q7R, L10LP, T12A, I13V, I15V, K20I, E35D, M36I, R41K, L63P, I64L, H69HD	D
	pt1833	2296264890	GQ399191	None		I13V, D60E, I62V, L63P	D
	pt1633	3577906697	GQ399391	None		I13V, L19I, N37S, R41K, L63P, I64V	D
	pt1513	4198741005	GQ399511	None		E35D, M36I, R41K, L63P, K70R, I72V	D
	pt1479	4406987634	GQ399545	None	L33IV	G16E, N37Q, P39S, R41K, D60E, I62IV, L63P, L89F	D
	pt1335	5226438876	GQ399689	None		I13V, K14R, K20I, E35D, M36I, R41K, L63P, I64L	D
	pt1290	5457436473	GQ399734	None		R41K, L63P, K70R, V77VI, I93IL	D
	pt761	8593258083	GQ400263	None		T12TAEK, I13V, K14KR, I15V, K20I, E35ED, M36I, R41K, L63P, I64L	D
	pt684	8994198547	GQ400340	None		G16E, L33V, N37Q, P39S, R41K, R57RK, D60E, L63P, L89F	D
	pt595	9420845038	GQ400429	None		I13V, K14R, K20I, E35D, M36I, N37D, L63P	D
	pt477	a5qdXc59sm	GQ400547	None		R41K, L63P, I64V, I72IT	D
	pt4	ZumibsvqAD	GQ401020	None		L10I, M36I, R41K, I62V, L63P, I64L, H69Q, I72V	D
Arruda (2010)	1017	16CE081017	JQ230590	None		I13V, K20R, L33V, M36I, P39PT, R41K, R57RK, I62V, L63P, I64V, E65D	D
Bonura (2010)	1068_133	1068_133	GU969486	None		I13V, M36I, R41K, L63P	D
	984_73	984_73	GU969495	None		I13V, M36I, R41K, L63P	D
	1136_102	1136_102	GU969514	None		I13V, M36I, R41K, L63P, I64IL	D
	1170_34	1170_34	GU969535	None		I13V, E35D, M36I, R41K, L63P	D
Castelbranco (2010)	090014A	090014A	HM357731	None		E35D, M36I, R41K, D60E, I62V, L63P, K70R, I93L	D
Castro (2010)	PHI-15	PHI-15	GQ131617	None		R41K, L63P, E65D, H69Q	D
Diop-Ndiaye (2010)	160HALD	160HALD	FN599689	None		T12S, I15V, E35D, M36I, R41K, Q61HN, I62V, L63P, H69Y	D
	1898HALD	1898HALD	FN599801	None		T12K, I13V, K14R, K20I, M36I, R41K, Q61D, L63P, I64V	D
Djoko (2010)	662	CD2996	FR666662	None		K14KR, R41K, L63P, H69Q, A71T, V77VI	D
	675	CD4647	FR666675	None		I13IV, M36I, R41K, Q61H, I62V, L63P, I64IV	D
	682	CD4059	FR666682	None		I13V, L33V, R41K, L63P, H69Q	D
Hamers (2010)	300425	CP076300425	HM119849	None		I13V, L19LI, L33V, R41KN, D60E, I62IV, L63P, V75I	D
Mosha (2010)	S50Pol	S50Pol	JQ071480	None		I13V, R41K, L63P, H69Y, I72V	D
	S73Pol	S73Pol	JQ071490	None		I13V, R41K, L63P, H69HY, V77I	D
	S75Pol	S75Pol	JQ071492	None		I13V, R41K, L63P, H69K	D
	S76Pol	S76Pol	JQ071493	None		I13V, M36I, P39PS, R41K, I62V, L63P, I64IL, H69Y, I72V	D
Ndembi (2010)	13734D_P1	13734	GQ409557	None		I13V, G16E, K20R, M36I, P39T, R41K, D60E, I62V, L63P, I64V, I72V	D
	13867D_P1	13867	GQ409559	None		I13V, I15V, L19I, R41K, L63P, I64V, H69Y, V77I	D
	15845D_P1	15845	GQ409579	None		R41K, L63P	D
	16666D_P1	16666	GQ409587	None		I13V, K14R, L33V, R41K, L63P, I64V	D
	DT2412_05_P1	2412	GQ409606	None	Q58E	I13V, R41K, L63P, I64V, I72V	D
	DT3527_05_P1	3527	GQ409621	None		M36I, R41K, L63P	D
	DT3771_05_P1	3771	GQ409624	None		I15V, M36I, R41K, I62V, L63P, I93L	D
	DT3951_05_P1	3951	GQ409626	None		I13V, M36I, R41K, L63P, I72V	D
	DT5712_04_P1	5712	GQ409630	None		I13V, R41K, L63P, I64V, H69Y, I72E, V77I	D
	DT1524_05_P1	1524	GQ409631	None		I13V, R41K, L63P, I64V, H69Y, I72E, V77I	D
Ragonnet-Cronin (2010)	PHAC_447	PHAC_447	HM468945	None		T12S, I15V, L19Q, M36I, R41K, L63P, E65D, K70R	D
Soares (2010)	CM02_010	CM02_010	GU366151	None		E35D, M36I, R41K, L63P, I64V, K70T	D
Towler (2010)	8	338994-E	HM037818	None		L10V, G17E, R41K, D60DE, L63P, A71AT, I72IV	D
		418316-G	HM037887	None		L10V, G17E, R41K, L63P, A71T, I72V	D
		505503-G	HM037899	None		L10V, G17DE, R41K, L63P, A71T, I72V	D
	439553-X	439553-X	HM037830	None		L10V, I13V, G16E, K20R, M36I, P39S, R41K, I62V, L63P, I72V	D
	454358-Z	454358-Z	HM037833	None		I13V, R41K, R57K, D60E, Q61E, L63P, I64V, H69Y, V77I	D
	317051-R	317051-R	HM037835	None		E35D, R41K, L63P, H69HY, I85IM	D
	338185-E	338185-E	HM037854	None		P39Q, R41K, D60E, L63P, I64V, I85IV	D
	348266-T	348266-T	HM037858	None		I13V, M36I, R41K, L63P, I64V	D
	378415-M	378415-M	HM037864	None		E35D, R41K, L63P, I64L, A71T, V77I	D
	450487-M	450487-M	HM037881	None		I13V, K20M, M36I, P39S, R41K, I62V, L63P, I64V	D
von Wyl (2010)	4796734	4796734	GQ848131	None		Q7E, I13V, K14R, I15V, L19I, M36I, R41K, I62V, L63P, I72V, V77I	D
Yang (2010)	2010693440	2010693440	JQ616880	None		M36I, R41K, I62V, L63P, I64L, H69Y	D
Aghokeng (2011)	HJ1815	HJ1815	JN639521	None		L10LI, T12TP, K14KR, E35D, M36I, R41K, L63P, H69Q	D
	SK3012-PI	SK3012-PI	HQ864353	None		I15V, L19Q, E35D, M36I, R41K, Q61QE, L63P, I93L	D
	SK3005-PI	SK3005-PI	HQ864378	None		E35D, M36I, R41K, L63P, H69Q	D
Carvalho (2011)	O17-83	O17-83	GU214097	None		L10V, T12Q, I15V, M36I, N37E, R57K, L63P, I72T, I93L	D
Charpentier (2011)	69	CP 001 805		None		W6*, I13V, M36I, R41K, L63P, H69Y, I72V	D
El Annaz (2011)	6264	6264	HQ393275	None		T12P, E35D, M36I, R41K, L63P, I64V, C67W	D
Hamers (2011)	CP076301544	CP076301544	HQ993587	None		I13V, L19LI, M36L, R41K, L63P, I72M, L89LF	D
	CP076301550	CP076301550	HQ993593	None		N37ND, R41K, L63P, C67S, H69Y, I72V, V77I	D
	CP076301557	CP076301557	HQ993599	None		I13V, L19V, L33V, M36I, N37T, R41K, L63P, I72V	D
	CP076301564	CP076301564	HQ993605	None		R41K, L63P, C67S, I72T, V77I	D
	CP076301657	CP076301657	HQ993662	None		I13V, M36IV, R41K, L63P, K70KR	D
	CP076301659	CP076301659	HQ993663	None		E35D, M36I, N37D, L63P, I72V	D
	CP076301661	CP076301661	HQ993799	None		I13V, I15IV, Q18H, M36I, R41K, L63P	D
	CP076302306	CP076302306	HQ993852	None		L10V, I13V, L19I, R41K, L63P, I64V, I72E	D
	CP076302329	CP076302329	HQ993869	None		K14R, R41K, I62IV, L63P, I64L, H69Y, V77VI	D
	CP076304218	CP076304218	HQ993914	None		I13V, M36I, N37D, R41K, R57K, D60E, L63P, I64V	D
	CP076304227	CP076304227	HQ993922	None		L10LI, I13V, N37NCSY, R41RK, Q61DE, L63P, I64M, H69Y, I72V, V77I	D
	CP076304260	CP076304260	HQ993948	None		I13V, G16E, L33LV, M36I, P39S, R41K, K45R, D60E, I62V, L63P, I64V, I72IV	D
	CP076304267	CP076304267	HQ993955	None		L33V, M36MI, P39A, D60E, L63P, I64V, H69Y	D
	CP076304507	CP076304507	HQ993975	None		L19T, R41K, R57RK, L63P, I64L, H69Y, I72V	D
	CP076300721	CP076300721	HQ994924	None		T12P, I13V, R41K, D60E, L63P, C67S, I72V	D
	CP076300761	CP076300761	HQ994937	None		I13V, R41K, L63P, I64V, H69Y, I72T, V77I	D
	CP076300807	CP076300807	HQ994944	None		L10I, I13V, M36I, R41K, D60E, I62V, L63P, C67D	D
	CP076301806	CP076301806	HQ994978	None		I13V, M36I, R41K, L63P	D
	CP076301817	CP076301817	HQ994979	None		I13V, I15V, M36I, R41K, L63P, I64V, I72E	D
	CP076301851	CP076301851	HQ994993	None		M36MI, R41K, L63P	D
	CP076301864	CP076301864	HQ995000	None		L10V, I13V, M36I, R41K, L63P, I64V, E65D	D
	CP076301872	CP076301872	HQ995004	None		I13V, M36I, R41K, L63P, I64V, H69Y, I72V	D
	CP076302063	CP076302063	HQ995026	None		L10V, I13V, L19T, P39T, R41K, L63P, I64L	D
	CP076302082	CP076302082	HQ995036	None		L10I, T12N, M36I, R41K, L63P	D
	CP076302938	CP076302938	HQ995040	None		M36I, R41K, L63P, I64V	D
	CP076302962	CP076302962	HQ995049	None		L19I, E35D, M36I, R41K, L63P	D
	CP076302964	CP076302964	HQ995050	None		I13V, R41K, D60E, L63P	D
	CP076302992	CP076302992	HQ995064	None		I15V, M36L, N37D, R41K, L63P, I64V, H69Y, K70T, I72T, T91TA	D
	CP076303006	CP076303006	HQ995071	None		I13V, M36I, R41K, K43R, R57K, L63P, I64V	D
	CP076303008	CP076303008	HQ995073	None		I13V, K14R, M36I, R41K, L63P, I64V, I72T	D
	CP076300742	CP076300742	HQ995100	None		I13V, M36I, R41K, D60E, I62V, L63P, I64V	D
	CP076300768	CP076300768	HQ995101	None		R41K, L63P, I64V, H69Y, I72T	D
	CP076300848	CP076300848	HQ995115	None		T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69Y	D
	CP076300851	CP076300851	HQ995118	None		T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69Y	D
	CP076301819	CP076301819	HQ995161	None		I13V, M36MI, R41K, K43R, R57K, L63P, I64V	D
	CP076301871	CP076301871	HQ995175	None		L10LI, I13V, I15V, M36I, R41K, L63P, I64V, K70R	D
	CP076302010	CP076302010	HQ995186	None		I13V, R41K, L63P, I64V, I72IV, V77I	D
	CP076302023	CP076302023	HQ995192	None		M36I, N37D, R41K, Q61H, I62V, L63P, C67Y, H69Y, I72T	D
	CP076302024	CP076302024	HQ995193	None		L10V, I13V, K20R, E35D, M36I, L63P, H69Q	D
	CP076302027	CP076302027	HQ995194	None		I13V, K20R, M36I, N37NT, R41K, R57K, L63P, I64V, H69Y, I72V	D
	CP076302814	CP076302814	HQ995214	None		L19Q, R41K, L63P, V77I, I85V	D
	CP076302977	CP076302977	HQ995220	None		T12P, I13V, K14R, R41K, L63P, I64V, I72V	D
	CP076302987	CP076302987	HQ995221	None		M36I, R41K, L63P, I64V	D
	CP076303041	CP076303041	HQ995225	None		L10V, I13V, M36L, R41K, D60E, Q61E, I62V, L63P, I64V	D
	CP076303048	CP076303048	HQ995231	None		L10V, I13V, R41K, D60E, Q61E, L63P, I72V	D
	CP076303049	CP076303049	HQ995232	None		L10V, I13V, M36I, L63P, I64V, I72V	D
	CP076303053	CP076303053	HQ995235	None		I13V, R41K, L63P, I64L, A71T	D
	CP076303056	CP076303056	HQ995237	None		L10V, I13V, M36L, N37D, R41K, L63P, I64V, H69Y, K70T, I72T	D
	CP076303083	CP076303083	HQ995260	None		T12P, I13V, L19I, M36I, R41K, D60E, L63P, I64V, K70R	D
	CP076303086	CP076303086	HQ995263	None		I13V, R41K, D60E, L63P	D
	CP076303098	CP076303098	HQ995274	None		I13V, L33LV, M36I, R41K, I62V, L63P, I64V, H69Y, I72E	D
	CP076303105	CP076303105	HQ995281	None		L10V, I13V, R41K, L63P, K70R	D
	CP076303115	CP076303115	HQ995291	None		I13IV, L33V, M36MI, R41K, L63P, K70R	D
	CP076303123	CP076303123	HQ995297	None		I13V, M36I, N37D, R41K, R57K, I62V, L63P, I64V, E65D, H69Y, K70R, I72V	D
	CP076303124	CP076303124	HQ995298	None		E35D, M36I, R41K, L63P	D
	CP076303132	CP076303132	HQ995304	None		I13V, L33V, N37S, R41K, I62V, L63P, I64L	D
	CP076300701	CP076300701	HQ995309	None		L10I, I13V, G16E, M36I, R41K, L63P, I64V, E65D	D
	CP076300729	CP076300729	HQ995320	None		I13V, R41K, L63P, I64V, H69Y	D
	CP076300733	CP076300733	HQ995322	None		I13V, K20R, R41K, D60E, L63P, I64V, H69Y, I72T, V77I	D
	CP076300735	CP076300735	HQ995324	None		T12P, I13V, I15V, R41K, K55R, L63P, I64V, V77I	D
	CP076300773	CP076300773	HQ995341	None		I13V, R41K, L63P	D
	CP076300800	CP076300800	HQ995361	None		I15IV, E35D, M36I, R41K, I62V, L63P, E65D, K70R	D
	CP076301919	CP076301919	HQ995391	None		M36I, R41K, I62V, L63P, I93L	D
	CP076301935	CP076301935	HQ995402	None		R41K, K45KR, D60E, L63P, I64IV, C67Y	D
	CP076301939	CP076301939	HQ995405	None		I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, V77I	D
	CP076301940	CP076301940	HQ995406	None		L10LQ, I13V, K20KR, M36I, R41K, I62IV, L63P, I64IV, I72V	D
	CP076301946	CP076301946	HQ995411	None	L33I	I13V, G16E, M36I, R41K, R57K, L63P, I64V, I72V	D
	CP076301948	CP076301948	HQ995413	None		L10V, I13V, M36IL, N37D, R41K, D60E, L63P, I64V, H69Y, I72V, V77I	D
	CP076301953	CP076301953	HQ995418	None		I13V, I15V, G17E, R41K, L63P, I64V	D
	CP076301954	CP076301954	HQ995419	None		I13V, M36I, R41K, L63P, I64V, H69Y, I72V, V77I	D
	CP076301958	CP076301958	HQ995423	None		I13V, R41K, L63P, I64V, V77I	D
	CP076301965	CP076301965	HQ995429	None		I13V, N37E, R41K, K43R, D60E, I62V, L63P, I64V, H69Y, I72L	D
	CP076301974	CP076301974	HQ995438	None		I13V, I15V, E35D, R41K, L63P, I64V, H69Y, I72V	D
	CP076301975	CP076301975	HQ995439	None		L10V, T12K, I13V, L19I, M36I, N37D, R41K, L63P, I64L, I72IV	D
	CP076301983	CP076301983	HQ995444	None		I13V, M36I, R41K, Q61D, I62V, L63P, I64V, E65D, K70R, I72T	D
	CP076301986	CP076301986	HQ995446	None		L10I, T12TS, I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V, E65D, I72V	D
	CP076301994	CP076301994	HQ995449	None		L10V, M36I, R41K, L63P, I93L	D
	CP076302018	CP076302018	HQ995454	None		T12S, I13V, I15V, E35ED, R41K, L63P, I64V	D
	CP076302078	CP076302078	HQ995462	None		L10V, M36V, N37NY, R41K, D60E, L63P, I64V, I72IV	D
	CP076302079	CP076302079	HQ995463	None		L10V, T12K, G17E, M36I, R41K, L63P, I64L, H69Q	D
	CP076302914	CP076302914	HQ995478	None		I13V, I15V, E35D, R41K, L63P, I64V, H69Y, K70R, I72V	D
	CP076302915	CP076302915	HQ995479	None		I13V, R41K, R57K, L63P, I64V, I72V	D
	CP076302933	CP076302933	HQ995489	None		I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69HY, V77I	D
	CP076302934	CP076302934	HQ995490	None		I13V, R41K, L63P, K70R	D
Kao (2011)	Pat112	36446	HQ657928	None		K14KR, R41K, R57K, Y59Y*, L63P, I64IV, H69Y, I72M, V77I	D
	Pat009	40398	HQ658031	None		T12TI, K14KEGR, I15V, Q18QH, L19LIKQ, M36I, N37D, P39PL, R57K, D60E, I62IV, L63P, E65EK	D
Kasang (2011)	32638	32638	HM572344	None		L10V, I13V, M36I, R41K, L63P, H69Y	D
	3318	3318	HM572347	None		I13V, M36I, R41K, D60E, I62V, L63P, I64V, I72M	D
	17184	17184	HM572350	None		I13V, M36I, R41K, L63P, I64V	D
	17200	17200	HM572412	None	G48GR	T12S, I15V, L19V, A28AP, M36I, N37K, R41N, G51GR, R57RS, L63P, I72IV	D
Ndembi (2011)	NTCPS723	NTCPS723	HQ702623	None		T12A, I13V, M36I, R41K, L63P, I64V, I72V	D
	NTCPS722	NTCPS722	HQ702624	None		I13V, K14R, M36I, N37D, R41K, L63P, I64V	D
	AICPS338	AICPS338	HQ702632	None		R41K, L63P, I64V, H69Y	D
	AICPS033	AICPS033	HQ702668	None		T12S, I13V, I15V, L19I, K20T, R41K, L63P, I64V, I72V, V77I	D
	AICPS108	AICPS108	HQ702674	None		I13V, R41K, R57K, D60E, L63P, I64V	D
	AICPS008	AICPS008	HQ702679	None		I13V, R41K, R57K, D60E, L63P, I64V, H69Y	D
Rolland (2011)	2495	consensus_2495	JF320054	None		I13V, R41K, L63P, V77I	D
Sanabani (2011)	BR1067	BR1067	JN692456	None		I13V, M36I, R57K, Q61N, L63P	D
Santos (2011)	J331	J331_PR	JN010705	None		M36I, N37T, R41K, I62V, L63P, H69K, I72V, L89M, I93L	D
van Zyl (2011)	A26	A26	JN638154	None		T12P, I13V, M36I, R41K, L63P, I64V	D
Avila-Rios (2012)	M0CFM68ISM	M0CFM68ISM	KC169240	None		L10V, N37E, R41K, D60N, L63P, I72E, V77I, I93L	D
	MF00MB0PUE	MF00MB0PUE	KC169304	None		L10V, T12I, I13V, R41K, L63P	D
	O000M82MUC	O000M82MUC	KC169410	None		I13V, M36MI, R41K, Q61QE, L63P, I72IV	D
	P2F0MBCLYR	P2F0MBCLYR	KC169567	None		L10V, K14R, N37D, L63P, I64M, E65K, A71V, V77I, I93L	D
	S000MM8MV6	S000MM8MV6	KC169618	None		T12P, I13V, M36MI, N37NY, R41K, R57RK, L63P, V77I, I93L	D
	DA00MJCQWA	DA00MJCQWA	KC168439	None		I13V, N37D, D60E, L63P	D
	G000M83RTS	G000M83RTS	KC168850	None		M36I, R41K, I62V, L63P, I64L, I93L	D
Chen (2012)	YN09DH0036	YN09DH0036	JQ658506	None		T12S, K14R, L19I, M36I, R41K, R57K, L63P, I93L	D
	YN09DH0038	YN09DH0038	JQ658508	None		T12P, K14R, I15V, L19T, M36I, R41K, L63P, I72V, I93L	D
	YN09DH0070	YN09DH0070	JQ658539	None		T12S, K14KR, I15V, L19I, M36IV, R41K, D60DE, I62V, L63P, A71AT, I93L	D
	YN09DH0104	YN09DH0104	JQ658567	None		I15V, L19I, K20R, M36V, R41K, I62V, L63P, I93L	D
	YN09DH0134	YN09DH0134	JQ658593	None		T12S, I13V, K14R, I15V, L19I, M36V, R41K, I62V, L63P, A71V, I93L	D
	YN10DH0008	YN10DH0008	JQ658634	None		K14R, L19I, M36V, R41K, K45R, R57K, L63P, I93L	D
	YN10DH0009	YN10DH0009	JQ658635	None		K14R, L19I, M36V, R41K, K45KR, R57K, I62IMV, L63P, A71AV, I72IV, I93L	D
	YN10DH0062	YN10DH0062	JQ658685	None		T12TA, K14R, L19I, M36L, R41K, R57K, I62IV, L63P, V82I, I93L	D
	YN10DH0096	YN10DH0096	JQ658717	None		T12S, I13V, K14R, I15V, L19I, M36MI, R41RK, K45KR, D60DE, I62IV, L63P, I64IL, H69HKNQ, K70KR, A71AV, L89LM, I93L	D
	YN10DH0131	YN10DH0131	JQ658751	None		L19M, E34G, M36I, R41K, R57K, L63P, I64L, I93L	D
da Silveira (2012)	BRMS05_10	BRMS05_10	JF342316	None		E35D, M36I, R41K, R57K, Q61N, L63P, I64L, I93L	D
De Gascun (2012)	IRL14593	IRL14593	JN622302	None		I13V, R41K, D60DE, L63P, H69HY, K70KR, V77VI	D
	IRL20203	IRL20203	JN622306	None		G17GDE, L19IT, M36IL, N37D, R41K, I62IV, L63P, I64L, A71AT, I72V, I93IL	D
	IRL32980	IRL32980	JN622307	None		I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T	D
	IRL32981	IRL32981	JN622308	None		I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T	D
	IRL19192	IRL19192	JN622358	None		I13V, L19V, R41K, I62V, L63P, I64L, H69K, L89M	D
	IRL22457	IRL22457	JN622366	None		T12S, M36V, R41K, D60DE, I62V, L63P, H69Y, I72EV	D
	IRL03800	IRL03800	JN622620	None		L10V, E35D, M36I, N37E, R41K, L63P, C67S	D
Delwart (2012)	479-5106-8	479-5106-8	JN214942	None		R41K, I62V, L63P, V77I, I93L	D
	479-2547-7	479-2547-7	JN215097	None		I15V, E35D, M36I, N37D, R41K, K43R, Q61E, L63P, H69Q, A71T, I72V, I93L	D
	479-7344-2	479-7344-2	JN215100	None		L10V, I13V, M36I, K45R, L63P, I64L, V77I, I93L	D
Escobar (2012)	ES142	ES142	JX467006	None		L10V, T12R, I15V, Q18L, L19V, R41K, L63P, I72V, V77I, I93L	D
Hassan (2012)	RS09000853	RS09000853	HQ441598	None		T12K, I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69C	D
	RS09000878	RS09000878	HQ441623	None		I13V, R41K, L63P, K70R	D
	RS09000908	RS09000908	HQ441653	None		I13IV, E35D, M36I, N37D, R41K, L63P, K70R	D
	RS09000909	RS09000909	HQ441654	None		I13V, K20R, R41K, L63P, H69Y, V77I	D
	RS09000920	RS09000920	HQ441664	None		I13V, L19I, R41K, L63P, H69Y, I72T, V77I	D
	RS09000922	RS09000922	HQ441666	None		I13V, R41K, L63P	D
	RS09000935	RS09000935	HQ441677	None		L10V, T12TK, I13V, M36I, R41K, D60E, L63P	D
	RS09000949	RS09000949	HQ441691	None		I13V, R41K, L63P, I64V, E65D, K70KR, V77I	D
	RS09000955	RS09000955	HQ441695	None	V11I	L33V, R41K, D60E, L63P, C67S, H69HY, K70KR	D
	RS09000981	RS09000981	HQ441716	None		I13V, M36I, R41K, K45KR, L63P, I64V, E65D, I72IV	D
	RS11000261	RS11000261	JQ698358	None		I13V, L33V, M36I, R41K, L63P, I64V, H69Y	D
	RS11000289	RS11000289	JQ698376	None		I13IV, R41K, R57K, I62V, L63P, I64IV, H69Y, I72IV, V77I	D
	RS11000306	RS11000306	JQ698391	None		I13V, R57K, L63P, A71T, I72V, V77I	D
	RS11000315	RS11000315	JQ698394	None		I15V, E35D, R41K, L63P, I72IV, V82I	D
	RS11000333	RS11000333	JQ698408	None		I13V, R41K, L63P, I64IL	D
	RS11000359	RS11000359	JQ698426	None		I13V, M36I, R41K, I62V, L63P, I64V, H69Y, I72IT	D
Karlsson (2012)	SE_48	SE_48	JQ698699	None		I13V, E35D, N37ND, L63P, I64V, K70R	D
	SE_259	SE_259	JQ698846	None		E35D, N37D, R41K, K43R, L63P, A71T, Q92R	D
Machado (2012)	CUPL0909	CUPL0909	HQ655342	None		M36I, R41K, K43R, L63P, H69Q	D
	CUPL0910	CUPL0910	HQ655343	None		E35D, M36I, R41K, K43R, I62V, L63P, H69Q, I72V	D
	CUPL0911	CUPL0911	HQ655344	None		M36I, R41K, L63P, H69Q, K70R	D
	CUPL0915	CUPL0915	HQ655348	None		M36I, R41K, K43R, L63P, H69Q	D
	CUPL0916	CUPL0916	HQ655349	None		M36I, R41K, K43R, L63P, H69Q, I72V	D
	CUPL0920	CUPL0920	HQ655353	None		I13V, R41K, D60E, L63P, H69Q, V77I	D
	CUPL0925	CUPL0925	HQ655358	None		K20R, M36I, R41K, K43R, D60E, I62V, L63P, H69Q	D
	CUPL0929	CUPL0929	HQ655362	None		I13V, R41K, L63P, H69Q	D
	CUPL0932	CUPL0932	HQ655365	None		L19I, E35D, M36I, R41K, L63P, H69Q	D
	CUPL0934	CUPL0934	HQ655367	None		E35D, M36I, R41K, L63P, H69Q, K70Q, I93L	D
	CUPL0940	CUPL0940	HQ655373	None		M36I, R41K, L63P, H69Q, K70R	D
	CUPL0941	CUPL0941	HQ655374	None		T12P, L19I, K20R, E35D, M36I, R41K, L63P, H69Q, K70E, A71T, I93L	D
	CUPL1005	CUPL1005	HQ655382	None		E35D, M36I, R41S, L63P, H69Q	D
	CUPL1007	CUPL1007	HQ655384	None		M36I, R41K, K43R, I62V, L63P, H69Q, K70R, I72M, V82I, I93L	D
	CUPL1008	CUPL1008	HQ655385	None		I13V, R41K, L63P, H69Q	D
	CUPL1015	CUPL1015	HQ655392	None		L10I, E35D, M36I, R41K, L63P, H69Q, K70Q, I93L	D
	CUPL1028	CUPL1028	HQ655405	None		L10I, I13V, K14R, I15V, G16E, E35D, M36I, N37S, R41K, I62R, L63P, H69Q	D
	CUPL1030	CUPL1030	HQ655407	None		K20R, E35D, M36I, N37S, R41K, L63P, H69HQ	D
	CUPL1041	CUPL1041	JN000013	None		T12S, I13V, N37S, R41K, D60E, L63P, H69Q, V77I	D
	CUPL1048	CUPL1048	JN000020	None		I15V, E35D, M36I, R41K, K43R, L63P, H69Q, V82I	D
	CUPL1062	CUPL1062	JN000034	None		L10V, E35D, M36I, R41K, D60E, L63P, H69Q, V77I	D
	CUPL1067	CUPL1067	JN000039	None		I13V, E35D, M36I, R41K, D60E, L63P, H69Q	D
	CUPL1073	CUPL1073	JN000045	None		M36I, R41K, K43R, Q61E, L63P, H69Q	D
	CUPL1077	CUPL1077	JN000049	None		E35D, N37S, R41K, D60E, Q61E, L63P, H69Q, I93L	D
	CUPL1080	CUPL1080	JN000052	None		E35D, M36I, R41K, K43R, I62V, L63P, H69Q, K70Q, A71T, I93L	D
	CUPL1081	CUPL1081	JN000053	None		M36I, R41K, I62V, L63P, I93L	D
	CUPL1084	CUPL1084	JN000056	None		I13V, L19I, R41K, L63P, H69Q, A71T	D
	CUPL1090	CUPL1090	JN000062	None		E35D, R41K, K45R, L63P, I64L, H69Q	D
	CUPL1096	CUPL1096	JN000068	None	Q58E	T12E, I15V, L19I, E35D, M36I, N37D, R41K, K43R, R57K, D60E, Q61E, L63P, H69Q, I93L	D
	CUPL1101	CUPL1101	JX194180	None		T12S, I13V, N37S, R41K, D60E, L63P	D
	CUPL1105	CUPL1105	JX194184	None		I13V, G16GE, M36I, R41K, L63P, H69Q	D
	CUPL1126	CUPL1126	JX194205	None		E35D, M36I, R41K, K43R, I62V, L63P, H69Q	D
	CUPL1127	CUPL1127	JX194206	None		M36I, R41K, K43R, L63P, H69Q	D
	CUPL1132	CUPL1132	JX194211	None		K20R, E35D, M36I, N37D, R41K, K43R, G49E, G51E, Q61E, L63P, H69Q	D
	CUPL1142	CUPL1142	JX194221	None		E35D, M36I, R41K, R57K, L63P, I64V, H69Q, K70Q	D
	CUPL1153	CUPL1153	JX194232	None		M36I, R41K, D60E, I62V, L63P, H69Q	D
Murillo (2012)	11030	11030	KC412728	None		K14KR, E35D, M36I, R41K, D60E, I62V, L63P, H69Y, I72M	D
	11057	11057	KC412733	None		E35D, M36I, R41K, D60E, I62V, L63P, H69Y, I72M	D
	11283	11283	KC412753	None		L10I, M36I, N37NK, R41K, I62V, L63P, I64MV, H69Y, I72M, V82VI, I93L	D
	11448	11448	KC412778	None		L10IV, G16E, E35D, M36I, P39S, R41K, D60E, I62V, L63P, I93L	D
Nazziwa (2012)	3065402	3065402	JX498977	None		I13V, P39A, R41K, D60E, L63P, I64V, V77I	D
	3111130	3111130	JX498980	None		I13V, K20R, M36I, N37T, R41K, I62V, L63P, I64V	D
	3152701	3152701	JX498997	None		K14R, M36I, R41K, L63P, I64L	D
	3154302	3154302	JX498998	None		T12S, I15V, L19V, E35D, M36I, N37K, R41N, D60E, L63P, V77I	D
	6307501	6307501	JX499011	None		I13V, R41K, L63P, H69Q	D
Ragonnet-Cronin (2012)	C05_049	C05_049	JX014987	None		E35ED, N37ND, L38LM, R41K, L63P, V77I, L89M, I93IL	D
Reynolds (2012)	D0710	D0710-0	JN652147	None		I13V, R41K, L63P, H69Q, V77VI	D
		D0710-1	JN652180	None		I13V, R41K, L63P, H69Q, V77I	D
	E0090	E0090-0	JN652149	None		I13V, M36I, R41K, L63P, I64V, H69Y, I72V	D
		E0090-1	JN652182	None		I13V, M36I, R41K, K45R, L63P, I64V, H69Y, I72V	D
	F0785	F0785-0	JN652157	None	L10LF	I13V, M36MI, R41K, D60E, I62V, L63P, I64V, K70R	D
Ssemwanga (2012)	RCC_TDR_481029	RCC_TDR_481029	JQ266024	None		I13V, L19I, M36I, R41K, D60E, I62V, L63P, H69Y, I72T	D
	RCC_TDR_355927	RCC_TDR_355927	JQ266028	None		E35D, M36I, R41K, L63P, I64L	D
	RCC_TDR_358027	RCC_TDR_358027	JQ266038	None		I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, I72V	D
	RCC-TDR-480431	RCC-TDR-480431	JQ266075	None		I13V, M36I, R41K, L63P, H69Y, I72V	D
	RCC-TDR-359822	RCC-TDR-359822	JQ266078	None		I13V, R41K, L63P, I64L	D
	RCC-TDR-483673	RCC-TDR-483673	JQ266082	None		R41K, L63P, I72T, V77I, I93L	D
	RCC_TDR-480124	RCC_TDR-480124	JQ266087	None		I13V, E35D, R57K, L63P, I64V, H69Y, V77I	D
Ssemwanga (2012)	1444HR	1444HR	JF800193	None		L10I, M36I, R41K, L63P, I64V, C67Y	D
	7177HR	7177HR	JF800219	None		I13V, K20R, M36I, N37D, R41K, L63P, I64V, E65D, K70R, I72V	D
	5443HR	5443HR	JF800226	None		I13V, M36I, R41K, R57K, D60E, L63P, I64V	D
Yang (2012)	KN-97	KN-97	JQ616926	None		T12S, I13V, R41K, L63P, C67S, A71AT, V77I	D
	KN-39	KN-39	JQ616934	None		T12S, I13V, L33V, P39T, R41K, D60E, I62V, L63P, H69Y	D
	KEN-11T	KEN-11T		None		I13V, R41K, L63P, I64L, V77I	D
Youngpairoj (2012)	cm182bb	cm182bb	DQ166435	None	Q58E	E35D, M36I, R41K, L63P, H69K, V77I	D
Alencar (2013)	RJ2-0022	RJ2-0022	JQ237949	None		E35D, M36I, R41K, R57K, Q61N, L63P, I64L, H69Y, V77I	D
	SP2-0036	SP2-0036	JQ238064	None		I13V, M36I, R41K, Q61D, I62IV, L63P, I64V, C67CHRY	D
	RJ2-0063	RJ2-0063	JQ238088	None		Q7E, T12P, K14R, E35D, M36I, N37D, R41K, L63P, I64L, A71V, I72V, V77I, I93L	D
	MG2-0023	MG2-0023	JQ238092	None		I15V, L19T, E35D, M36I, R41K, L63P, H69Q, V77I	D
	RJ2-0062	RJ2-0062	JQ238096	None		I15V, L19I, E35D, M36I, R41K, L63P, H69K	D
	MG2-0036	MG2-0036	JQ238127	None		L10V, I15V, L19I, K20Q, M36I, R41K, K45R, R57K, I62V, L63P, I72IV, I93L	D
	RJ2-0095	RJ2-0095	JQ238222	None		E35D, M36I, N37D, R41K, L63P, I64L, A71V, I72E, V77I, I93L	D
Frentz (2013)	EHR-18561	EHR-18561	JX299844	None		I13V, R41K, D60E, L63P, I64V, C67E, V77I	D
	EHR-25464	EHR-25464	JX299982	None		I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T	D
	EHR-40586	EHR-40586	JX300226	None		L10I, I13V, I15V, E35D, P39Q, R41K, I62V, L63P, I93L	D
	EHR-43863	EHR-43863	JX300279	None		L10I, L33V, M36MI, N37X, P39Q, R41RK, L63P, I93L	D
	EHR-44143	EHR-44143	JX300284	None		I13IV, K14KR, M36I, R41K, R57RK, I62IV, L63P, I64V	D
	EHR-60237	EHR-60237	JX300541	None		I13A, K14R, K20I, M36I, R41K, K43R, L63P	D
	EHR-75358	EHR-75358	JX300821	None		T12P, K14R, E35D, M36I, R41K, K43R, L63P, H69Q	D
	EHR-92753	EHR-92753	JX301085	None		I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T	D
Hawke (2013)	2134587 H	2134587 H	KC238060	None		I13IV, I15IV, E35ED, R41K, L63P, I64IV, K70KR, I72IV	D

Protease Inhibitors

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