<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Protease Inhibitors

Subtype D
Gene PR
Mutation L63P
Rx PI-naive
IncludeMixtures No
References 125
Patients 507
Isolates 518
 
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Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# PIs WksPIMajorDRMs PIMinorDRMs OtherMutSubtype
Alizon (1986)ELIELIK03454None   T12A, R41K, L63P, H69QD
Cornelissen (1997)92UG00192UG001AF009395None   E35D, M36I, R41K, L63P, H69Y, V77ID
Gao (1998)94UG11494UG114U88824None   L10V, I13V, M36I, R41K, L63P, I64LD
Tanuri (1999)BRAM-24BRAM-24AF076445None   E35D, N37S, R41K, L63P, I64LD
Nkengasong (2000)JN_IC0068JN_IC0068AF216978None   I13V, M36I, L38M, R41K, R57K, Q61N, L63P, I64VD
Vergne (2000)LVMP976LVMP976AJ286969None  Q58EI15V, G16E, E35D, M36I, N37E, P39S, R41K, D60E, L63PD
Eshleman (2001)SE830SE830AF388163None   E35D, M36I, R41K, K45R, I62IV, L63P, I64L, H69Y, V77ID
 SE618SE618AF388153None   I13V, R41K, D60DE, L63P, H69HY, I72IV, V77VID
 SE549SE549AF388149None   L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64VD
 SE494SE494AF388143None   I13V, R41K, D60E, L63P, C67SD
 SE414SE414AF388141None   I13V, E35D, M36I, P39Q, R41K, K45R, R57K, L63P, H69K, L89MD
 SE887SE887AF388134None  L89LVI13V, I15V, M36I, R41K, L63P, I64LD
 SE43SE43AF388066None   I13V, R41K, L63P, H69CY, I72ITD
 SE33SE33AF388065None  I50IF, L76II13V, M36I, R41K, L63P, I64V, A71T, I72IV, V77ID
Yahi (2001)NY_M40M40AY010404None   E35D, M36I, R41K, R57RK, L63P, I64V, I93LD
Cuevas (2002)CU94CU94AF425475None   K20R, E35D, M36I, R41K, K43R, L63P, H69QD
 CU73CU73AF425454None   K14R, L19I, E35D, M36I, N37D, R41K, K43R, Q61D, L63P, H69Q, I93LD
 CU71CU71AF425452None   L10I, K14R, R41K, K43R, L63P, I64L, H69QD
 CU67CU67AF425448None   I13V, K20R, M36I, N37D, R41K, K43R, L63P, H69QD
 CU65CU65AF425446None   E35D, M36I, N37D, R41K, K43R, L63P, I64L, H69Q, K70R, A71T, I72VD
 CU64CU64AF425445None   E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69QD
 CU62CU62AF425443None   Q18L, R41K, K43R, L63P, H69QD
 CU61CU61AF425442None  T74PK20R, E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69QD
 CU60CU60AF425441None   I13V, K14R, G16E, K20M, E35D, M36I, R41K, K43R, L63P, H69Q, L89MD
 CU45CU45AF425426None   L10I, I13V, K20I, E35D, M36I, R41K, K45R, L63P, H69Q, L89MD
 CU40CU40AF425421None   I13V, K20R, M36I, R41K, K43R, Q61E, L63P, H69QD
 CU38CU38AF425419None   I13V, R41K, L63P, H69Q, V77ID
 CU31CU31AF425412None   E35D, M36I, R41K, K43R, L63P, H69QD
 CU30CU30AF425411None   R41K, K43R, R57K, I62V, L63P, H69Q, A71T, V77I, I93LD
 CU29CU29AF425410None   E35D, M36I, R41K, K43R, D60E, L63P, H69QD
 CU23CU23AF425404None   L5Q, I15V, E35D, M36I, N37D, R41K, K43R, D60E, L63P, H69QD
 CU17CU17AF425398None   T12K, L19I, E35D, M36I, R41K, L63PD
 CU8CU8AF425389None   K20R, E35D, M36I, N37D, R41K, K43R, L63P, H69Q, V77ID
 CU7CU7AF425388None   E35D, M36I, R41K, K43R, L63P, H69QD
Dowling (2002)KSM4001KSM4001AF457072None   I13V, N37S, R41K, L63P, I64L, K70RD
 KER2003KER2003AF457051None   R41K, L63P, I64LD
Dumans (2002)AD-52AD-52AF413818None   L63P, I64VD
Eshleman (2002)123108n123108nAF410208None   I13V, R41K, L63P, H69Y, I72VD
 124661e124661eAF410212None   I13V, M36I, R41K, L63PD
 131226r131226rAF410219None   I13V, K14R, R41K, L63P, I64LD
 139339y139339yAF410234None   I13V, K14KR, N37ND, R41K, L63P, E65D, K70R, A71AT, I72IT, V77VID
 139367i139367iAF410235None   I13V, R41K, L63P, I72M, V75ID
 147143w147143wAF410247None   I13V, M36I, R41RK, L63P, H69HYD
 147607q147607qAF410249None   T12A, I13V, R41K, D60E, L63P, V77VID
 148154f148154fAF410250None   I13V, K20R, M36I, R41K, I62V, L63P, I64LD
Fonjungo (2002)CM11CM11AF406731None  L33IE35D, M36I, R41K, L63P, I64M, H69Y, I72T, I93LD
 CM238CM238AF406728None   I15V, L19Q, E35D, M36I, L63P, H69Q, I93LD
 CM221CM221AF406722None   I15V, E35D, M36I, R41K, L63P, I93LD
 CM145CM145AF406712None   L10V, I15V, E35D, M36I, R41K, L63P, H69Q, I93LD
Gibb (2002)DMG112112_w-38 None   R41K, I62IV, L63P, C67CS, V77VID
 DMG1919_w0 None   R41K, D60E, L63P, I64IV, H69Q, V77VID
Hierholzer (2002)SU488SU488AY102484None   I13V, I15V, G16E, N37T, P39S, R41K, D60E, L63P, A71T, I93LD
 SU502SU502AY102485None   I15V, P39A, R41K, L63P, I72V, I93LD
 SU510SU510AY102487None   T12S, I13V, L19I, L33V, N37T, P39S, R41K, L63P, I64V, E65D, H69YD
 SU049SU049AY102492None   I13V, L33V, N37T, P39S, R41K, D60E, L63P, I64V, H69YD
 SU245SU245AY102501None   I13V, R41K, I62V, L63P, I64V, H69YD
Pandrea (2002)IP_97CIRMF0597CIRMF05AY140619None   I3L, L10I, R41K, L63P, I64L, C67S, H69Q, I72V, V77ID
Vergne (2002)LV19LV19AJ313419None  L33IQ18L, L19I, E35D, M36I, P39S, R41K, Q61H, L63P, H69Y, I72VD
Brindeiro (2003)BRP2119BRP2119AY213401None   L10V, G16E, P39S, I62V, L63P, I72VD
Shafer (2003)A384_03030303aEF548190None   I13V, R41K, L63P, I64IV, H69Y, I72IVD
Vidal (2003)99TCDMN01199TCDMN011AJ488926None   I15V, L19Q, E35D, M36I, R41K, D60E, L63P, I64V, K70T, I72VD
 HIM519488HIM519488AJ519488None   I15V, L19Q, E35D, M36I, R41K, D60E, L63P, I64V, K70T, I72VD
Eshleman (2004)SE549SE549_7dAY428693None   L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64VD
 SE13SE13_7dAY428670None   I13V, R41K, L63P, H69CY, I72ITD
Eshleman (2004)ESH_Pat32ESH695AY435330None   T12TA, I13V, K14KR, R41K, L63P, H69YD
 ESH_Pat34ESH698AY425354None   T12A, K14R, R41K, L63P, H69Q, V77VI, I93LD
Eshleman (2004) SE698_7dAY428709None   T12A, K14KR, R41K, Q61QE, L63P, H69Q, V77VI, I93ILD
Eshleman (2004)ESH_Pat47ESH626AY435323None   I13V, L24LF, M36I, R41K, R57K, L63P, C67YD
 ESH_Pat72ESH708AY435341None   I13V, E35D, N37D, R41K, R57RK, D60E, L63P, I64V, K70KR, I72LD
 ESH_Pat78ESH780AY435360None   I13V, M36MI, R41K, L63P, I64VD
 ESH_Pat104ESH218AY435246None   I13V, K20KR, M36L, R41K, K43KR, L63P, I64V, K70KR, I72V, V77ID
 ESH_Pat138ESH9AY435221None   I13V, M36I, N37ND, R41K, D60E, L63P, I64V, G68GED
Eshleman (2004) SE9_7dAY428669None   I13V, M36I, N37ND, R41K, D60E, L63P, I64VD
Eshleman (2004)ESH_Pat139ESH517AY435295None   T12P, I13V, R41K, L63P, I64V, I72M, V77ID
 ESH_Pat165ESH815AY435362None   I13V, M36I, P39AS, R41K, D60E, I62V, L63P, I64VD
Eshleman (2004)ABB208ABB208AY444271None   E35D, M36I, R41K, I62V, L63P, H69QD
Fang (2004)ML249_3_1997249_3_1997AY322187None   L19I, M36I, R41K, L63PD
Grossman (2004)17745Pr11517745Pr115AY529625None   G16E, K20R, M36I, P39S, R41K, D60E, I62V, L63PD
Gulick (2004)RG224RG224w0 None   L10V, T12I, I13V, N37D, L63P, I93LD
 RG36RG36w172 None   I13L, G16GE, P39S, R41K, D60E, I62V, L63P, I64VD
Kijak (2004)0009BBY01CM.0009AY371155None   I15V, E35D, M36I, R41K, I62V, L63P, H69QD
 0175BA01CM.0175AY371156None   I15V, E35D, M36I, R41K, L63P, H69QD
 4412HAL01CM.4412AY371157None   E35D, M36I, R41K, L63P, H69QD
Konings (2004)KF_Pat300CM4869AY359685None   L10V, E35D, R41K, L63PD
 KF_Pat600CM1457AY359688None   L10V, I15V, E35D, M36I, R41K, L63P, H69Q, I93LD
 KF_Pat700CM1705AY359689None   T12S, E35D, M36I, R41K, D60E, I62V, L63P, H69QD
Servais (2004)SJ_Pat25SJKLM007AJ412934None   K14R, L19I, M36I, R41K, L63PD
Shi (2004)pWCML249pWCML249AY445524None   L19I, R41K, L63PD
Snoeck (2004)BE28BE28AY900735None   E35D, M36I, R41K, R57K, Q61H, L63PD
Yang (2004)97KE00497KE004AY492752None   I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89MD
 97KE04797KE047AY492768None   Q7R, R8L, I13V, K14R, T31P, R41K, L63PD
 00KE55800KE558AY492775None   R8G, P9G, L10P, I13V, M36I, R41K, L63P, I64L, H69Q, I72VD
 99KE57799KE577AY492779None   R8L, I13V, R41K, L63P, K70RD
 99KE59399KE593AY492788None   I13V, R41K, L63P, I64VD
Casado (2005)CU7CU7AY894994None   E35D, M36I, R41K, K43R, L63P, H69QD
 Cu64Cu64AY894995None   E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69QD
Grossman (2005)1714517145PR424 None   G16E, K20R, M36I, P39S, R41K, D60E, I62V, L63PD
K'Aluoch (2005)OK_TC021304TC021304DQ079836None  Q58EI13V, M36I, R41K, L63PD
 OK_TC010103TC010103DQ079845None   I13V, L33LV, R41K, D60E, Q61E, L63PD
 OK_TC008403TC008403DQ079850None   R41K, L63P, V77VID
 OK_TC007703TC007703DQ079854None   L10IV, I13V, M36I, P39S, R41K, I62V, L63P, I64VD
 OK_TC007103TC007103DQ079855None   I13V, K20R, M36I, R41K, R57K, L63P, I64V, H69Y, I72VD
Non-B Workgroup (2005)UK4834UK4834 None   I13V, K20R, M36I, R41K, L63P, I64V, H69Y, I72V, V77ID
 UK4902UK4902AY901225None   I13V, K14KR, R41K, D60E, L63P, H69N, V77ID
Weber (2005)F86075F86075AY677412None   I13V, R41K, L63PD
 01F868601F8686AY677486None   I13V, K14R, I15V, M36I, R41K, I62V, L63P, I64VD
Saad (2006)MDS_01UAKV17601UAKV176DQ055205None   T12P, I13V, E35D, R41K, L63P, I64VD
 MDS_02UAKV18502UAKV185DQ055311None   T12P, I13V, E35D, R41K, L63P, I64VD
Tebit (2006)A543A543DQ682729None   L10V, I15V, L19T, L38V, R41K, R57K, Q61H, L63P, V77ID
Vergne (2006)LV_02CM-CK1_1802CM-18AM181793None  Q58EL10V, E35D, M36IL, N37E, R41K, R57K, D60T, Q61D, L63P, H69QD
 LV_02CM-CK1_202CM-2AM181792None   E35D, M36I, R41K, R57RK, D60E, L63P, H69CD
Vidal (2006)NV_KIST13202.KIST132AM041030None   I13V, K20R, M36I, R41K, I62V, L63P, C67Y, K70RD
 NV_KS07502.KS075AM041009None   I15V, R41K, L63P, I72TD
 NV_KSS00602.KSS006AM041047None   T4S, I13V, L19I, K20R, E35D, N37D, D60E, L63P, I72V, V77ID
 NV_LBFE01202.LBFE012AM041003None   T12S, I15V, L19I, M36I, R41K, I62V, L63P, H69YD
 NV_MBFE25202.MBFE252AM041024None   E35D, M36I, R41K, R57K, Q61H, I62V, L63P, H69N, I93LD
Baker (2007)9593OA02-9593OAAY803465None   I15V, L19A, M36I, R41K, L63PD
 6580SP03-6580SPAY803466None   K14R, M36I, R41K, L63P, I64VD
 TC0257TC025704AY803487None   T12S, I13V, K14R, I15IV, M36I, R41K, L63P, I72VD
 P0062P0062-070305EF186139None   I13V, M36I, R41K, L63P, I64IVD
 A1040MBA1040-190905EF186213None   I13V, K20R, M36I, P39T, R41K, L63P, A71V, I93LD
 A1055MBA1055-261005EF186219None   I13V, R41K, L63P, I64V, H69Y, I72E, V77ID
 AR006MBAR006-120405EF186222None   I13V, R41K, D60E, L63P, I64VD
Brumme (2007)1075PR_1075EF368385None   L33V, N37T, P39S, R41K, Q61HY, L63P, I64V, H69YD
 1101PR_1101EF368411None  D30DEI13IV, L33V, N37NH, P39PS, R41K, I62IV, L63P, H69Y, I72IVD
Church (2007)009-107995N009EF611992None   I13V, M36I, R41K, D60E, L63P, I64V, V77VID
 043-110304r043EF612000None   I13V, R41K, L63P, H69CY, I72ITD
 218-118871V218EF612016None   I13V, K20KR, M36L, R41K, K43KR, L63P, I64V, K70KR, I72V, V77ID
 494-127521w494EF612044None   I13V, G16A, R41K, D60E, L63P, C67SD
 517-129070G517EF612054None   T12P, I13V, R41K, L63P, I64V, I72M, V77ID
 618-133703t618EF612083None   I13V, R41K, D60DE, L63P, C67S, H69HY, I72IV, V77ID
 626-134055S626EF612088None   I13V, M36I, R41K, R57K, L63P, C67YD
 695-137452V695EF612110None   T12TA, I13V, K14KR, R41K, L63P, H69YD
 698-134930N698EF612112None   T12A, K14R, R41K, L63P, H69Q, V77VI, I93LD
 708-136157U708EF612118None   I13V, E35D, N37D, R41K, R57RK, D60E, L63P, I64V, K70KR, I72LD
 780-141912B780EF612143None   I13V, M36MI, R41K, L63P, I64VD
 804-145242E804EF612152None   I13V, R41K, L63P, I64VD
 815-145489E815EF612157None   I13V, M36I, P39A, R41K, D60E, I62V, L63P, I64VD
 830-145979q830EF612162None   P1PS, E35D, M36MI, R41K, K45KR, I62IV, L63P, I64L, H69HY, V77ID
 887-148290B887EF612182None  L89LVI13V, I15V, M36I, R41K, L63P, I64LD
Galluzzo (2007)M22900UG_M22900JQ220085None   I13V, E35D, M36I, R41K, L63P, I64L, F99FLD
 M22840UG_M22840JQ220097None   I13V, M36I, R41K, R57K, D60E, L63P, I64V, I72VD
 M21430UG_M21430JQ220141None  L33LII13V, G17D, R41K, L63P, H69YD
 M22620UG_M22620JQ220145None   I13V, N37NS, R41K, L63P, I64V, H69YD
Holguin (2007)614034614034EF583265None  L10LFT12P, I13IV, K14R, L19LP, K20KM, E35D, M36MI, R41K, K43KR, L63P, H69HQ, K70KE, A71AT, L89LM, I93ILD
Varella (2007)29ini29ini None   T12E, K14R, E35D, M36I, R41K, D60E, Q61E, L63PD
Vidal (2007)U0106U0106AM260218None   I13V, N37T, R41K, L63P, K70RD
 U192902BU.U1929AM260231None   I13V, R41K, L63P, H69K, A71T, V77ID
von Wyl (2007)5210324616EF449795None   K14R, P39S, R41K, D60E, Q61E, I62V, L63P, A71V, I72M, V77I, P79Q, I93LD
  5511940EF449922None   K14R, P39S, R41K, D60E, Q61E, I62V, L63P, A71V, I72V, V77I, P79Q, I93LD
Caron (2008)1345Gab1345PEU556459None  L33IE35N, M36I, R41K, Q61H, L63P, K70E, I72VD
Church (2008)414210P414210PEU380758None   I13V, E35D, R41K, K43R, L63P, I64V, H69YD
 461597R461597REU380765None   I13V, R41K, R57K, L63P, I64V, H69Y, V77ID
Holguin (2008)SP17-340928SP17-340928EU255320None   L10V, I13V, K14R, R41K, R57K, L63P, I64VD
 SP27-289350SP27-289350EU255400None   L10V, I13IV, E35D, N37H, R41K, I62V, L63P, A71TD
 SP4-341752SP4-341752EU255489None   I15V, E35D, M36I, R41K, R57K, L63PD
Ibe (2008)148148AB356197None   L10I, I13V, M36IL, N37D, R41I, R57RK, D60E, L63P, I64V, K70RD
Ndembi (2008)IAEM010IAEM010EU306749None   I13V, M36I, R41K, L63PD
 IAEM011IAEM011EU306750None   I13V, L19I, M36I, N37D, R41K, D60G, I62V, L63P, I64V, C67S, K70RD
 IAEAM021IAEAM021EU306758None   I13V, N37S, R41K, D60E, L63P, I64V, K70T, V77ID
 IAEM030IAEM030EU306762None   I13V, E35D, M36I, N37T, R41K, L63PD
 IAEM057IAEM057EU306780None   I13V, L33V, R41K, L63P, I64MD
Nyombi (2008)TBK029TBK029EU251732None   I13IV, K20KR, E35D, N37S, R41K, L63P, V75ID
 TBK074TBK074EU251761None   T12A, I13V, K14R, E35D, M36I, R41K, R57K, D60E, I62V, L63P, I64V, H69Y, I72VD
 TBK088TBK088EU251771None   I13V, R41K, L63P, H69YD
 TMS203TMS203EU251840None   I13V, I15V, G16E, P39T, R41K, I62V, L63P, I64V, V77ID
 TMS220TMS220EU251853None   L10V, I13V, E35D, P39Q, R41K, D60E, L63P, I64V, H69K, A71T, V77ID
 TMS323TMS323EU251869None   E35D, N37S, R41K, L63PD
Riddler (2008)RG56600RG56600w67 None   M36I, R41K, L63P, K70RD
Somi (2008)BG-05-896BG-05-896JQ616953None   M36I, P39T, R41K, I62V, L63P, I64L, A71TD
Aghokeng (2009)CYM041CYM041GU191591None   L10LI, T12TP, K14KR, E35D, M36I, R41K, L63P, H69QD
Bartolo (2009)HDC23801AOHDC238EU068230None   I13V, E35N, R41K, D60E, L63PD
 HJM11301AOHJM113EU068251None   R41K, L63P, K70RD
 HM17601AOHM176EU068319None   G17E, M36I, R41K, L63P, H69HRD
Brumme (2009)A2508A2508GQ371768None   I13V, Q18L, M36I, I62V, L63P, A71V, I93LD
Cuevas (2009)X2713_1X2713_1GU326183None   Q18H, M36I, Q61E, L63P, I64V, I72V, I93LD
Eshleman (2009)B03497W207-156906FJ389060None   I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64VD
 B20757W307-156919FJ389063None   I13V, L33V, R41K, I62V, L63P, I64V, E65D, K70RD
 K39436W207-156978FJ389084None   I13V, R41K, L63P, I64V, H69YD
 H30633W107-156985FJ389091None   I13V, I15V, N37D, R41K, D60E, L63P, H69YD
 C03919W207-156988FJ389093None   I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64VD
 A40697W208-101505FJ389109None   I13V, M36I, R41K, L63P, I64IVD
 J49527R908-101550FJ389119None   I13IV, M36MI, R41K, R57RK, L63P, I64V, K70R, V77ID
 K13286W308-101560FJ389120None   I13V, M36I, R41K, L63PD
 A06734R908-102647FJ389138None   I13V, K20I, M36I, R41K, L63P, I64V, E65DD
 B05421W308-102650FJ389141None   R41K, R57K, D60E, I62V, L63P, A71AT, I72L, V77I, Q92QRD
Fujisaki (2009)6060AB442247None   I13V, G17GE, M36I, N37D, R41K, D60E, I62IV, L63P, I64V, K70RD
Koyalta (2009)30TCHAD-30FJ688183None   M36I, N37D, R41K, D60E, I62V, L63P, I64V, C67SD
Mintsa-Ndong (2009)MKK227MKK227AM903429None   L19I, R41K, K45KR, L63P, I64L, H69HQ, V77ID
Nadai (2009)CRC08656CRC08656EU439750None   I13V, N37S, R41K, D60E, I62V, L63P, I72M, V77ID
 CRC50069CRC50069EU839608None   K14R, R41K, D60E, L63P, I72V, V77ID
Steegen (2009)BV232BV232-1EU872131None  L33II13V, L19IV, K20KM, M36I, R41K, K43KR, R57K, Q61E, L63P, I64V, E65ED, I72IV, I93LD
Vercauteren (2009)pt2185108155411GQ398839None   Q7R, L10LP, T12A, I13V, I15V, K20I, E35D, M36I, R41K, L63P, I64L, H69HDD
 pt18332296264890GQ399191None   I13V, D60E, I62V, L63PD
 pt16333577906697GQ399391None   I13V, L19I, N37S, R41K, L63P, I64VD
 pt15134198741005GQ399511None   E35D, M36I, R41K, L63P, K70R, I72VD
 pt14794406987634GQ399545None  L33IVG16E, N37Q, P39S, R41K, D60E, I62IV, L63P, L89FD
 pt13355226438876GQ399689None   I13V, K14R, K20I, E35D, M36I, R41K, L63P, I64LD
 pt12905457436473GQ399734None   R41K, L63P, K70R, V77VI, I93ILD
 pt7618593258083GQ400263None   T12TAEK, I13V, K14KR, I15V, K20I, E35ED, M36I, R41K, L63P, I64LD
 pt6848994198547GQ400340None   G16E, L33V, N37Q, P39S, R41K, R57RK, D60E, L63P, L89FD
 pt5959420845038GQ400429None   I13V, K14R, K20I, E35D, M36I, N37D, L63PD
 pt477a5qdXc59smGQ400547None   R41K, L63P, I64V, I72ITD
 pt4ZumibsvqADGQ401020None   L10I, M36I, R41K, I62V, L63P, I64L, H69Q, I72VD
Arruda (2010)101716CE081017JQ230590None   I13V, K20R, L33V, M36I, P39PT, R41K, R57RK, I62V, L63P, I64V, E65DD
Bonura (2010)1068_1331068_133GU969486None   I13V, M36I, R41K, L63PD
 984_73984_73GU969495None   I13V, M36I, R41K, L63PD
 1136_1021136_102GU969514None   I13V, M36I, R41K, L63P, I64ILD
 1170_341170_34GU969535None   I13V, E35D, M36I, R41K, L63PD
Castelbranco (2010)090014A090014AHM357731None   E35D, M36I, R41K, D60E, I62V, L63P, K70R, I93LD
Castro (2010)PHI-15PHI-15GQ131617None   R41K, L63P, E65D, H69QD
Diop-Ndiaye (2010)160HALD160HALDFN599689None   T12S, I15V, E35D, M36I, R41K, Q61HN, I62V, L63P, H69YD
 1898HALD1898HALDFN599801None   T12K, I13V, K14R, K20I, M36I, R41K, Q61D, L63P, I64VD
Djoko (2010)662CD2996FR666662None   K14KR, R41K, L63P, H69Q, A71T, V77VID
 675CD4647FR666675None   I13IV, M36I, R41K, Q61H, I62V, L63P, I64IVD
 682CD4059FR666682None   I13V, L33V, R41K, L63P, H69QD
Mosha (2010)S50PolS50PolJQ071480None   I13V, R41K, L63P, H69Y, I72VD
 S73PolS73PolJQ071490None   I13V, R41K, L63P, H69HY, V77ID
 S75PolS75PolJQ071492None   I13V, R41K, L63P, H69KD
 S76PolS76PolJQ071493None   I13V, M36I, P39PS, R41K, I62V, L63P, I64IL, H69Y, I72VD
Ndembi (2010)13734D_P113734GQ409557None   I13V, G16E, K20R, M36I, P39T, R41K, D60E, I62V, L63P, I64V, I72VD
 13867D_P113867GQ409559None   I13V, I15V, L19I, R41K, L63P, I64V, H69Y, V77ID
 15845D_P115845GQ409579None   R41K, L63PD
 16666D_P116666GQ409587None   I13V, K14R, L33V, R41K, L63P, I64VD
 DT2412_05_P12412GQ409606None  Q58EI13V, R41K, L63P, I64V, I72VD
 DT3527_05_P13527GQ409621None   M36I, R41K, L63PD
 DT3771_05_P13771GQ409624None   I15V, M36I, R41K, I62V, L63P, I93LD
 DT3951_05_P13951GQ409626None   I13V, M36I, R41K, L63P, I72VD
 DT5712_04_P15712GQ409630None   I13V, R41K, L63P, I64V, H69Y, I72E, V77ID
 DT1524_05_P11524GQ409631None   I13V, R41K, L63P, I64V, H69Y, I72E, V77ID
Ragonnet-Cronin (2010)PHAC_447PHAC_447HM468945None   T12S, I15V, L19Q, M36I, R41K, L63P, E65D, K70RD
Soares (2010)CM02_010CM02_010GU366151None   E35D, M36I, R41K, L63P, I64V, K70TD
Towler (2010)8338994-EHM037818None   L10V, G17E, R41K, D60DE, L63P, A71AT, I72IVD
  418316-GHM037887None   L10V, G17E, R41K, L63P, A71T, I72VD
  505503-GHM037899None   L10V, G17DE, R41K, L63P, A71T, I72VD
 439553-X439553-XHM037830None   L10V, I13V, G16E, K20R, M36I, P39S, R41K, I62V, L63P, I72VD
 454358-Z454358-ZHM037833None   I13V, R41K, R57K, D60E, Q61E, L63P, I64V, H69Y, V77ID
 317051-R317051-RHM037835None   E35D, R41K, L63P, H69HY, I85IMD
 338185-E338185-EHM037854None   P39Q, R41K, D60E, L63P, I64V, I85IVD
 348266-T348266-THM037858None   I13V, M36I, R41K, L63P, I64VD
 378415-M378415-MHM037864None   E35D, R41K, L63P, I64L, A71T, V77ID
 450487-M450487-MHM037881None   I13V, K20M, M36I, P39S, R41K, I62V, L63P, I64VD
von Wyl (2010)47967344796734GQ848131None   Q7E, I13V, K14R, I15V, L19I, M36I, R41K, I62V, L63P, I72V, V77ID
Yang (2010)20106934402010693440JQ616880None   M36I, R41K, I62V, L63P, I64L, H69YD
Aghokeng (2011)HJ1815HJ1815JN639521None   L10LI, T12TP, K14KR, E35D, M36I, R41K, L63P, H69QD
 SK3012-PISK3012-PIHQ864353None   I15V, L19Q, E35D, M36I, R41K, Q61QE, L63P, I93LD
 SK3005-PISK3005-PIHQ864378None   E35D, M36I, R41K, L63P, H69QD
Bunupuradah (2011)pt002pt002Pr None   L10I, I13V, I15V, M36I, R41K, I62V, L63P, I64V, I93LD
Carvalho (2011)O17-83O17-83GU214097None   L10V, T12Q, I15V, M36I, N37E, R57K, L63P, I72T, I93LD
Charpentier (2011)69CP 001 805 None   W6*, I13V, M36I, R41K, L63P, H69Y, I72VD
El Annaz (2011)62646264HQ393275None   T12P, E35D, M36I, R41K, L63P, I64V, C67WD
Hamers (2011)300425CP076300425HM119849None   I13V, L19LI, L33V, R41KN, D60E, I62IV, L63P, V75ID
 CP076301544CP076301544HQ993587None   I13V, L19LI, M36L, R41K, L63P, I72M, L89LFD
 CP076301550CP076301550HQ993593None   N37ND, R41K, L63P, C67S, H69Y, I72V, V77ID
 CP076301557CP076301557HQ993599None   I13V, L19V, L33V, M36I, N37T, R41K, L63P, I72VD
 CP076301564CP076301564HQ993605None   R41K, L63P, C67S, I72T, V77ID
 CP076301657CP076301657HQ993662None   I13V, M36IV, R41K, L63P, K70KRD
 CP076301659CP076301659HQ993663None   E35D, M36I, N37D, L63P, I72VD
 CP076301661CP076301661HQ993799None   I13V, I15IV, Q18H, M36I, R41K, L63PD
 CP076302306CP076302306HQ993852None   L10V, I13V, L19I, R41K, L63P, I64V, I72ED
 CP076302329CP076302329HQ993869None   K14R, R41K, I62IV, L63P, I64L, H69Y, V77VID
 CP076304218CP076304218HQ993914None   I13V, M36I, N37D, R41K, R57K, D60E, L63P, I64VD
 CP076304227CP076304227HQ993922None   L10LI, I13V, N37NCSY, R41RK, Q61DE, L63P, I64M, H69Y, I72V, V77ID
 CP076304260CP076304260HQ993948None   I13V, G16E, L33LV, M36I, P39S, R41K, K45R, D60E, I62V, L63P, I64V, I72IVD
 CP076304267CP076304267HQ993955None   L33V, M36MI, P39A, D60E, L63P, I64V, H69YD
 CP076304507CP076304507HQ993975None   L19T, R41K, R57RK, L63P, I64L, H69Y, I72VD
 CP076300721CP076300721HQ994924None   T12P, I13V, R41K, D60E, L63P, C67S, I72VD
 CP076300761CP076300761HQ994937None   I13V, R41K, L63P, I64V, H69Y, I72T, V77ID
 CP076300807CP076300807HQ994944None   L10I, I13V, M36I, R41K, D60E, I62V, L63P, C67DD
 CP076301806CP076301806HQ994978None   I13V, M36I, R41K, L63PD
 CP076301817CP076301817HQ994979None   I13V, I15V, M36I, R41K, L63P, I64V, I72ED
 CP076301851CP076301851HQ994993None   M36MI, R41K, L63PD
 CP076301864CP076301864HQ995000None   L10V, I13V, M36I, R41K, L63P, I64V, E65DD
 CP076301872CP076301872HQ995004None   I13V, M36I, R41K, L63P, I64V, H69Y, I72VD
 CP076302063CP076302063HQ995026None   L10V, I13V, L19T, P39T, R41K, L63P, I64LD
 CP076302082CP076302082HQ995036None   L10I, T12N, M36I, R41K, L63PD
 CP076302938CP076302938HQ995040None   M36I, R41K, L63P, I64VD
 CP076302962CP076302962HQ995049None   L19I, E35D, M36I, R41K, L63PD
 CP076302964CP076302964HQ995050None   I13V, R41K, D60E, L63PD
 CP076302992CP076302992HQ995064None   I15V, M36L, N37D, R41K, L63P, I64V, H69Y, K70T, I72T, T91TAD
 CP076303006CP076303006HQ995071None   I13V, M36I, R41K, K43R, R57K, L63P, I64VD
 CP076303008CP076303008HQ995073None   I13V, K14R, M36I, R41K, L63P, I64V, I72TD
 CP076300742CP076300742HQ995100None   I13V, M36I, R41K, D60E, I62V, L63P, I64VD
 CP076300768CP076300768HQ995101None   R41K, L63P, I64V, H69Y, I72TD
 CP076300848CP076300848HQ995115None   T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69YD
 CP076300851CP076300851HQ995118None   T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69YD
 CP076301819CP076301819HQ995161None   I13V, M36MI, R41K, K43R, R57K, L63P, I64VD
 CP076301871CP076301871HQ995175None   L10LI, I13V, I15V, M36I, R41K, L63P, I64V, K70RD
 CP076302010CP076302010HQ995186None   I13V, R41K, L63P, I64V, I72IV, V77ID
 CP076302023CP076302023HQ995192None   M36I, N37D, R41K, Q61H, I62V, L63P, C67Y, H69Y, I72TD
 CP076302024CP076302024HQ995193None   L10V, I13V, K20R, E35D, M36I, L63P, H69QD
 CP076302027CP076302027HQ995194None   I13V, K20R, M36I, N37NT, R41K, R57K, L63P, I64V, H69Y, I72VD
 CP076302814CP076302814HQ995214None   L19Q, R41K, L63P, V77I, I85VD
 CP076302977CP076302977HQ995220None   T12P, I13V, K14R, R41K, L63P, I64V, I72VD
 CP076302987CP076302987HQ995221None   M36I, R41K, L63P, I64VD
 CP076303041CP076303041HQ995225None   L10V, I13V, M36L, R41K, D60E, Q61E, I62V, L63P, I64VD
 CP076303048CP076303048HQ995231None   L10V, I13V, R41K, D60E, Q61E, L63P, I72VD
 CP076303049CP076303049HQ995232None   L10V, I13V, M36I, L63P, I64V, I72VD
 CP076303053CP076303053HQ995235None   I13V, R41K, L63P, I64L, A71TD
 CP076303056CP076303056HQ995237None   L10V, I13V, M36L, N37D, R41K, L63P, I64V, H69Y, K70T, I72TD
 CP076303083CP076303083HQ995260None   T12P, I13V, L19I, M36I, R41K, D60E, L63P, I64V, K70RD
 CP076303086CP076303086HQ995263None   I13V, R41K, D60E, L63PD
 CP076303098CP076303098HQ995274None   I13V, L33LV, M36I, R41K, I62V, L63P, I64V, H69Y, I72ED
 CP076303105CP076303105HQ995281None   L10V, I13V, R41K, L63P, K70RD
 CP076303115CP076303115HQ995291None   I13IV, L33V, M36MI, R41K, L63P, K70RD
 CP076303123CP076303123HQ995297None   I13V, M36I, N37D, R41K, R57K, I62V, L63P, I64V, E65D, H69Y, K70R, I72VD
 CP076303124CP076303124HQ995298None   E35D, M36I, R41K, L63PD
 CP076303132CP076303132HQ995304None   I13V, L33V, N37S, R41K, I62V, L63P, I64LD
 CP076300701CP076300701HQ995309None   L10I, I13V, G16E, M36I, R41K, L63P, I64V, E65DD
 CP076300729CP076300729HQ995320None   I13V, R41K, L63P, I64V, H69YD
 CP076300733CP076300733HQ995322None   I13V, K20R, R41K, D60E, L63P, I64V, H69Y, I72T, V77ID
 CP076300735CP076300735HQ995324None   T12P, I13V, I15V, R41K, K55R, L63P, I64V, V77ID
 CP076300773CP076300773HQ995341None   I13V, R41K, L63PD
 CP076300800CP076300800HQ995361None   I15IV, E35D, M36I, R41K, I62V, L63P, E65D, K70RD
 CP076301919CP076301919HQ995391None   M36I, R41K, I62V, L63P, I93LD
 CP076301935CP076301935HQ995402None   R41K, K45KR, D60E, L63P, I64IV, C67YD
 CP076301939CP076301939HQ995405None   I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, V77ID
 CP076301940CP076301940HQ995406None   L10LQ, I13V, K20KR, M36I, R41K, I62IV, L63P, I64IV, I72VD
 CP076301946CP076301946HQ995411None  L33II13V, G16E, M36I, R41K, R57K, L63P, I64V, I72VD
 CP076301948CP076301948HQ995413None   L10V, I13V, M36IL, N37D, R41K, D60E, L63P, I64V, H69Y, I72V, V77ID
 CP076301953CP076301953HQ995418None   I13V, I15V, G17E, R41K, L63P, I64VD
 CP076301954CP076301954HQ995419None   I13V, M36I, R41K, L63P, I64V, H69Y, I72V, V77ID
 CP076301958CP076301958HQ995423None   I13V, R41K, L63P, I64V, V77ID
 CP076301965CP076301965HQ995429None   I13V, N37E, R41K, K43R, D60E, I62V, L63P, I64V, H69Y, I72LD
 CP076301974CP076301974HQ995438None   I13V, I15V, E35D, R41K, L63P, I64V, H69Y, I72VD
 CP076301975CP076301975HQ995439None   L10V, T12K, I13V, L19I, M36I, N37D, R41K, L63P, I64L, I72IVD
 CP076301983CP076301983HQ995444None   I13V, M36I, R41K, Q61D, I62V, L63P, I64V, E65D, K70R, I72TD
 CP076301986CP076301986HQ995446None   L10I, T12TS, I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V, E65D, I72VD
 CP076301994CP076301994HQ995449None   L10V, M36I, R41K, L63P, I93LD
 CP076302018CP076302018HQ995454None   T12S, I13V, I15V, E35ED, R41K, L63P, I64VD
 CP076302078CP076302078HQ995462None   L10V, M36V, N37NY, R41K, D60E, L63P, I64V, I72IVD
 CP076302079CP076302079HQ995463None   L10V, T12K, G17E, M36I, R41K, L63P, I64L, H69QD
 CP076302914CP076302914HQ995478None   I13V, I15V, E35D, R41K, L63P, I64V, H69Y, K70R, I72VD
 CP076302915CP076302915HQ995479None   I13V, R41K, R57K, L63P, I64V, I72VD
 CP076302933CP076302933HQ995489None   I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69HY, V77ID
 CP076302934CP076302934HQ995490None   I13V, R41K, L63P, K70RD
Kao (2011)Pat11236446HQ657928None   K14KR, R41K, R57K, Y59Y*, L63P, I64IV, H69Y, I72M, V77ID
 Pat00940398HQ658031None   T12TI, K14KEGR, I15V, Q18QH, L19LIKQ, M36I, N37D, P39PL, R57K, D60E, I62IV, L63P, E65EKD
Kasang (2011)3263832638HM572344None   L10V, I13V, M36I, R41K, L63P, H69YD
 33183318HM572347None   I13V, M36I, R41K, D60E, I62V, L63P, I64V, I72MD
 1718417184HM572350None   I13V, M36I, R41K, L63P, I64VD
 1720017200HM572412None  G48GRT12S, I15V, L19V, A28AP, M36I, N37K, R41N, G51GR, R57RS, L63P, I72IVD
Ndembi (2011)NTCPS723NTCPS723HQ702623None   T12A, I13V, M36I, R41K, L63P, I64V, I72VD
 NTCPS722NTCPS722HQ702624None   I13V, K14R, M36I, N37D, R41K, L63P, I64VD
 AICPS338AICPS338HQ702632None   R41K, L63P, I64V, H69YD
 AICPS033AICPS033HQ702668None   T12S, I13V, I15V, L19I, K20T, R41K, L63P, I64V, I72V, V77ID
 AICPS108AICPS108HQ702674None   I13V, R41K, R57K, D60E, L63P, I64VD
 AICPS008AICPS008HQ702679None   I13V, R41K, R57K, D60E, L63P, I64V, H69YD
Rolland (2011)2495consensus_2495JF320054None   I13V, R41K, L63P, V77ID
Sanabani (2011)BR1067BR1067JN692456None   I13V, M36I, R57K, Q61N, L63PD
Santos (2011)J331J331_PRJN010705None   M36I, N37T, R41K, I62V, L63P, H69K, I72V, L89M, I93LD
van Zyl (2011)A26A26JN638154None   T12P, I13V, M36I, R41K, L63P, I64VD
Avila-Rios (2012)M0CFM68ISMM0CFM68ISMKC169240None   L10V, N37E, R41K, D60N, L63P, I72E, V77I, I93LD
 MF00MB0PUEMF00MB0PUEKC169304None   L10V, T12I, I13V, R41K, L63PD
 O000M82MUCO000M82MUCKC169410None   I13V, M36MI, R41K, Q61QE, L63P, I72IVD
 P2F0MBCLYRP2F0MBCLYRKC169567None   L10V, K14R, N37D, L63P, I64M, E65K, A71V, V77I, I93LD
 S000MM8MV6S000MM8MV6KC169618None   T12P, I13V, M36MI, N37NY, R41K, R57RK, L63P, V77I, I93LD
 DA00MJCQWADA00MJCQWAKC168439None   I13V, N37D, D60E, L63PD
 G000M83RTSG000M83RTSKC168850None   M36I, R41K, I62V, L63P, I64L, I93LD
Chen (2012)YN09DH0036YN09DH0036JQ658506None   T12S, K14R, L19I, M36I, R41K, R57K, L63P, I93LD
 YN09DH0038YN09DH0038JQ658508None   T12P, K14R, I15V, L19T, M36I, R41K, L63P, I72V, I93LD
 YN09DH0070YN09DH0070JQ658539None   T12S, K14KR, I15V, L19I, M36IV, R41K, D60DE, I62V, L63P, A71AT, I93LD
 YN09DH0104YN09DH0104JQ658567None   I15V, L19I, K20R, M36V, R41K, I62V, L63P, I93LD
 YN09DH0134YN09DH0134JQ658593None   T12S, I13V, K14R, I15V, L19I, M36V, R41K, I62V, L63P, A71V, I93LD
 YN10DH0008YN10DH0008JQ658634None   K14R, L19I, M36V, R41K, K45R, R57K, L63P, I93LD
 YN10DH0009YN10DH0009JQ658635None   K14R, L19I, M36V, R41K, K45KR, R57K, I62IMV, L63P, A71AV, I72IV, I93LD
 YN10DH0062YN10DH0062JQ658685None   T12TA, K14R, L19I, M36L, R41K, R57K, I62IV, L63P, V82I, I93LD
 YN10DH0096YN10DH0096JQ658717None   T12S, I13V, K14R, I15V, L19I, M36MI, R41RK, K45KR, D60DE, I62IV, L63P, I64IL, H69HKNQ, K70KR, A71AV, L89LM, I93LD
 YN10DH0131YN10DH0131JQ658751None   L19M, E34G, M36I, R41K, R57K, L63P, I64L, I93LD
da Silveira (2012)BRMS05_10BRMS05_10JF342316None   E35D, M36I, R41K, R57K, Q61N, L63P, I64L, I93LD
De Gascun (2012)IRL14593IRL14593JN622302None   I13V, R41K, D60DE, L63P, H69HY, K70KR, V77VID
 IRL20203IRL20203JN622306None   G17GDE, L19IT, M36IL, N37D, R41K, I62IV, L63P, I64L, A71AT, I72V, I93ILD
 IRL32980IRL32980JN622307None   I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71TD
 IRL32981IRL32981JN622308None   I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71TD
 IRL19192IRL19192JN622358None   I13V, L19V, R41K, I62V, L63P, I64L, H69K, L89MD
 IRL22457IRL22457JN622366None   T12S, M36V, R41K, D60DE, I62V, L63P, H69Y, I72EVD
 IRL03800IRL03800JN622620None   L10V, E35D, M36I, N37E, R41K, L63P, C67SD
Delwart (2012)479-5106-8479-5106-8JN214942None   R41K, I62V, L63P, V77I, I93LD
 479-2547-7479-2547-7JN215097None   I15V, E35D, M36I, N37D, R41K, K43R, Q61E, L63P, H69Q, A71T, I72V, I93LD
 479-7344-2479-7344-2JN215100None   L10V, I13V, M36I, K45R, L63P, I64L, V77I, I93LD
Karlsson (2012)SE_48SE_48JQ698699None   I13V, E35D, N37ND, L63P, I64V, K70RD
 SE_259SE_259JQ698846None   E35D, N37D, R41K, K43R, L63P, A71T, Q92RD
Machado (2012)CUPL0909CUPL0909HQ655342None   M36I, R41K, K43R, L63P, H69QD
 CUPL0910CUPL0910HQ655343None   E35D, M36I, R41K, K43R, I62V, L63P, H69Q, I72VD
 CUPL0911CUPL0911HQ655344None   M36I, R41K, L63P, H69Q, K70RD
 CUPL0915CUPL0915HQ655348None   M36I, R41K, K43R, L63P, H69QD
 CUPL0916CUPL0916HQ655349None   M36I, R41K, K43R, L63P, H69Q, I72VD
 CUPL0920CUPL0920HQ655353None   I13V, R41K, D60E, L63P, H69Q, V77ID
 CUPL0925CUPL0925HQ655358None   K20R, M36I, R41K, K43R, D60E, I62V, L63P, H69QD
 CUPL0929CUPL0929HQ655362None   I13V, R41K, L63P, H69QD
 CUPL0932CUPL0932HQ655365None   L19I, E35D, M36I, R41K, L63P, H69QD
 CUPL0934CUPL0934HQ655367None   E35D, M36I, R41K, L63P, H69Q, K70Q, I93LD
 CUPL0940CUPL0940HQ655373None   M36I, R41K, L63P, H69Q, K70RD
 CUPL0941CUPL0941HQ655374None   T12P, L19I, K20R, E35D, M36I, R41K, L63P, H69Q, K70E, A71T, I93LD
 CUPL1005CUPL1005HQ655382None   E35D, M36I, R41S, L63P, H69QD
 CUPL1007CUPL1007HQ655384None   M36I, R41K, K43R, I62V, L63P, H69Q, K70R, I72M, V82I, I93LD
 CUPL1008CUPL1008HQ655385None   I13V, R41K, L63P, H69QD
 CUPL1015CUPL1015HQ655392None   L10I, E35D, M36I, R41K, L63P, H69Q, K70Q, I93LD
 CUPL1028CUPL1028HQ655405None   L10I, I13V, K14R, I15V, G16E, E35D, M36I, N37S, R41K, I62R, L63P, H69QD
 CUPL1030CUPL1030HQ655407None   K20R, E35D, M36I, N37S, R41K, L63P, H69HQD
 CUPL1041CUPL1041JN000013None   T12S, I13V, N37S, R41K, D60E, L63P, H69Q, V77ID
 CUPL1048CUPL1048JN000020None   I15V, E35D, M36I, R41K, K43R, L63P, H69Q, V82ID
 CUPL1062CUPL1062JN000034None   L10V, E35D, M36I, R41K, D60E, L63P, H69Q, V77ID
 CUPL1067CUPL1067JN000039None   I13V, E35D, M36I, R41K, D60E, L63P, H69QD
 CUPL1073CUPL1073JN000045None   M36I, R41K, K43R, Q61E, L63P, H69QD
 CUPL1077CUPL1077JN000049None   E35D, N37S, R41K, D60E, Q61E, L63P, H69Q, I93LD
 CUPL1080CUPL1080JN000052None   E35D, M36I, R41K, K43R, I62V, L63P, H69Q, K70Q, A71T, I93LD
 CUPL1081CUPL1081JN000053None   M36I, R41K, I62V, L63P, I93LD
 CUPL1084CUPL1084JN000056None   I13V, L19I, R41K, L63P, H69Q, A71TD
 CUPL1090CUPL1090JN000062None   E35D, R41K, K45R, L63P, I64L, H69QD
 CUPL1096CUPL1096JN000068None  Q58ET12E, I15V, L19I, E35D, M36I, N37D, R41K, K43R, R57K, D60E, Q61E, L63P, H69Q, I93LD
 CUPL1101CUPL1101JX194180None   T12S, I13V, N37S, R41K, D60E, L63PD
 CUPL1105CUPL1105JX194184None   I13V, G16GE, M36I, R41K, L63P, H69QD
 CUPL1126CUPL1126JX194205None   E35D, M36I, R41K, K43R, I62V, L63P, H69QD
 CUPL1127CUPL1127JX194206None   M36I, R41K, K43R, L63P, H69QD
 CUPL1132CUPL1132JX194211None   K20R, E35D, M36I, N37D, R41K, K43R, G49E, G51E, Q61E, L63P, H69QD
 CUPL1142CUPL1142JX194221None   E35D, M36I, R41K, R57K, L63P, I64V, H69Q, K70QD
 CUPL1153CUPL1153JX194232None   M36I, R41K, D60E, I62V, L63P, H69QD
Mollan (2012)MK133MK133w0 None   M36I, R41K, L63P, E65D, I72VD
 MK157MK157w0 None   K14R, M36L, N37D, D60E, I62V, L63P, I64VD
  MK157w85 None   T12A, K14R, M36L, N37D, D60E, I62V, L63P, I64VD
 MK54MK54w0 None   I13V, G16GE, M36I, N37S, R41K, L63P, I72VD
  MK54w50 None   I13V, M36I, N37S, R41K, L63P, I72VD
Murillo (2012)1103011030KC412728None   K14KR, E35D, M36I, R41K, D60E, I62V, L63P, H69Y, I72MD
 1105711057KC412733None   E35D, M36I, R41K, D60E, I62V, L63P, H69Y, I72MD
 1128311283KC412753None   L10I, M36I, N37NK, R41K, I62V, L63P, I64MV, H69Y, I72M, V82VI, I93LD
 1144811448KC412778None   L10IV, G16E, E35D, M36I, P39S, R41K, D60E, I62V, L63P, I93LD
Nazziwa (2012)30654023065402JX498977None   I13V, P39A, R41K, D60E, L63P, I64V, V77ID
 31111303111130JX498980None   I13V, K20R, M36I, N37T, R41K, I62V, L63P, I64VD
 31527013152701JX498997None   K14R, M36I, R41K, L63P, I64LD
 31543023154302JX498998None   T12S, I15V, L19V, E35D, M36I, N37K, R41N, D60E, L63P, V77ID
 63075016307501JX499011None   I13V, R41K, L63P, H69QD
Ragonnet-Cronin (2012)C05_049C05_049JX014987None   E35ED, N37ND, L38LM, R41K, L63P, V77I, L89M, I93ILD
Reynolds (2012)D0710D0710-0JN652147None   I13V, R41K, L63P, H69Q, V77VID
  D0710-1JN652180None   I13V, R41K, L63P, H69Q, V77ID
 E0090E0090-0JN652149None   I13V, M36I, R41K, L63P, I64V, H69Y, I72VD
  E0090-1JN652182None   I13V, M36I, R41K, K45R, L63P, I64V, H69Y, I72VD
 E0580E0580-1JN652183None   E35D, R41K, R57K, L63P, I64V, H69Y, I72VD
 F0785F0785-0JN652157None  L10LFI13V, M36MI, R41K, D60E, I62V, L63P, I64V, K70RD
Ssemwanga (2012)RCC_TDR_481029RCC_TDR_481029JQ266024None   I13V, L19I, M36I, R41K, D60E, I62V, L63P, H69Y, I72TD
 RCC_TDR_355927RCC_TDR_355927JQ266028None   E35D, M36I, R41K, L63P, I64LD
 RCC_TDR_358027RCC_TDR_358027JQ266038None   I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, I72VD
 RCC-TDR-480431RCC-TDR-480431JQ266075None   I13V, M36I, R41K, L63P, H69Y, I72VD
 RCC-TDR-359822RCC-TDR-359822JQ266078None   I13V, R41K, L63P, I64LD
 RCC-TDR-483673RCC-TDR-483673JQ266082None   R41K, L63P, I72T, V77I, I93LD
 RCC_TDR-480124RCC_TDR-480124JQ266087None   I13V, E35D, R57K, L63P, I64V, H69Y, V77ID
Ssemwanga (2012)1444HR1444HRJF800193None   L10I, M36I, R41K, L63P, I64V, C67YD
 7177HR7177HRJF800219None   I13V, K20R, M36I, N37D, R41K, L63P, I64V, E65D, K70R, I72VD
 5443HR5443HRJF800226None   I13V, M36I, R41K, R57K, D60E, L63P, I64VD
Yang (2012)KN-97KN-97JQ616926None   T12S, I13V, R41K, L63P, C67S, A71AT, V77ID
 KN-39KN-39JQ616934None   T12S, I13V, L33V, P39T, R41K, D60E, I62V, L63P, H69YD
 KEN-11TKEN-11T None   I13V, R41K, L63P, I64L, V77ID
Youngpairoj (2012)cm182bbcm182bbDQ166435None  Q58EE35D, M36I, R41K, L63P, H69K, V77ID
Alencar (2013)RJ2-0022RJ2-0022JQ237949None   E35D, M36I, R41K, R57K, Q61N, L63P, I64L, H69Y, V77ID
 SP2-0036SP2-0036JQ238064None   I13V, M36I, R41K, Q61D, I62IV, L63P, I64V, C67CHRYD
 RJ2-0063RJ2-0063JQ238088None   Q7E, T12P, K14R, E35D, M36I, N37D, R41K, L63P, I64L, A71V, I72V, V77I, I93LD
 MG2-0023MG2-0023JQ238092None   I15V, L19T, E35D, M36I, R41K, L63P, H69Q, V77ID
 RJ2-0062RJ2-0062JQ238096None   I15V, L19I, E35D, M36I, R41K, L63P, H69KD
 MG2-0036MG2-0036JQ238127None   L10V, I15V, L19I, K20Q, M36I, R41K, K45R, R57K, I62V, L63P, I72IV, I93LD
 RJ2-0095RJ2-0095JQ238222None   E35D, M36I, N37D, R41K, L63P, I64L, A71V, I72E, V77I, I93LD
Bila (2013)MZ10-212HIV-1KF927311None   T12S, K14KR, I15V, L19T, M36L, N37Q, R41K, D60E, I62V, L63P, H69K, I72M, L89MD
 MzNam297HIV-1KF927386None   T12S, R41K, R57K, L63P, H69ND
 MZAng38HIV-1KF927401None   T12A, L19I, R41K, I62V, L63P, I64L, A71T, I72E, V75I, V77ID
 MZAng16HIV-1KF927400None   T12S, I15V, L19I, N37T, R41K, I62V, L63P, I72V, V77ID
Billong (2013)MR001MR001KF192112None   I15V, E35D, M36I, R41K, R57K, L63P, H69QD
 MR058MR058KF192254None   E35D, M36I, N37E, R41K, L63PD
 MR051MR051KF192256None   E35D, M36I, R41K, L63P, H69Q, A71ATD
Frentz (2013)EHR-18561EHR-18561JX299844None   I13V, R41K, D60E, L63P, I64V, C67E, V77ID
 EHR-25464EHR-25464JX299982None   I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71TD
 EHR-40586EHR-40586JX300226None   L10I, I13V, I15V, E35D, P39Q, R41K, I62V, L63P, I93LD
 EHR-43863EHR-43863JX300279None   L10I, L33V, M36MI, N37X, P39Q, R41RK, L63P, I93LD
 EHR-44143EHR-44143JX300284None   I13IV, K14KR, M36I, R41K, R57RK, I62IV, L63P, I64VD
 EHR-60237EHR-60237JX300541None   I13A, K14R, K20I, M36I, R41K, K43R, L63PD
 EHR-75358EHR-75358JX300821None   T12P, K14R, E35D, M36I, R41K, K43R, L63P, H69QD
 EHR-92753EHR-92753JX301085None   I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71TD
Han (2013)LCGA497ILCGA497IJX070509None   L19I, M36V, R41K, R57K, L63P, I93LD
Hassan (2013)RS09000853RS09000853HQ441598None   T12K, I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69CD
 RS09000878RS09000878HQ441623None   I13V, R41K, L63P, K70RD
 RS09000908RS09000908HQ441653None   I13IV, E35D, M36I, N37D, R41K, L63P, K70RD
 RS09000909RS09000909HQ441654None   I13V, K20R, R41K, L63P, H69Y, V77ID
 RS09000920RS09000920HQ441664None   I13V, L19I, R41K, L63P, H69Y, I72T, V77ID
 RS09000922RS09000922HQ441666None   I13V, R41K, L63PD
 RS09000935RS09000935HQ441677None   L10V, T12TK, I13V, M36I, R41K, D60E, L63PD
 RS09000949RS09000949HQ441691None   I13V, R41K, L63P, I64V, E65D, K70KR, V77ID
 RS09000955RS09000955HQ441695None  V11IL33V, R41K, D60E, L63P, C67S, H69HY, K70KRD
 RS09000981RS09000981HQ441716None   I13V, M36I, R41K, K45KR, L63P, I64V, E65D, I72IVD
 RS11000261RS11000261JQ698358None   I13V, L33V, M36I, R41K, L63P, I64V, H69YD
 RS11000289RS11000289JQ698376None   I13IV, R41K, R57K, I62V, L63P, I64IV, H69Y, I72IV, V77ID
 RS11000306RS11000306JQ698391None   I13V, R57K, L63P, A71T, I72V, V77ID
 RS11000315RS11000315JQ698394None   I15V, E35D, R41K, L63P, I72IV, V82ID
 RS11000333RS11000333JQ698408None   I13V, R41K, L63P, I64ILD
 RS11000359RS11000359JQ698426None   I13V, M36I, R41K, I62V, L63P, I64V, H69Y, I72ITD
Hawke (2013)2134587 H2134587 HKC238060None   I13IV, I15IV, E35ED, R41K, L63P, I64IV, K70KR, I72IVD
Holguin (2013)ES142ES142JX467006None   L10V, T12R, I15V, Q18L, L19V, R41K, L63P, I72V, V77I, I93LD
Kiertiburanakul (2013)R71193R71193KC921873None   L10I, I13V, E35D, M36I, R41K, L63P, V77ID
 X12049X12049KC994381None   E35D, N37A, R41RK, R57K, D60E, L63P, I64V, H69HQ, I72IVD
 X12TS020X12TS020KC994416None   L10V, I13V, L19IM, E35D, M36MI, N37D, L63PD
 R51TS021R51TS021KF059666None  L33FT12V, I13IV, E35D, N37D, R41RK, R57K, I62V, L63P, I64IL, A71TD
 R75038R75038KC962535None   E35D, M36I, R41K, L63P, K70T, A71AV, V77VI, I93LD
 R41106R41106KC970965None   L19M, E35D, M36I, N37D, R41K, I62V, L63PD
Kiptoo (2013)KAP018KAP018KC516882None   G16E, P39S, L63P, I64L, H69Y, V77ID
 SNH100SNH100KC516979None   I13V, R41K, L63P, I72M, V75I, V77VID
 KAP042KAP042KC516894None   I13V, I62V, L63P, I64L, I72V, V77ID
 KTL219KTL219KC517056None   E35D, N37S, R41K, L63P, I64V, I72VD
 KAP051KAP051KC516900None   I13V, K14R, R41K, L63P, I64V, H69Y, I72V, V77ID
 KTL054KTL054KC517006None   K14R, R41K, D60E, L63P, H69QD
 SNH057SNH057KC516973None   L10LI, I13IV, I15IV, N37T, P39S, R41K, D60E, L63P, I64V, H69C, V77ID
 SNH016SNH016KC516981None   I13IV, M36I, R41K, K45R, R57K, L63PD
 KAP015KAP015KC516881None   R41K, L63P, I64L, H69QD
Leye (2013)SN.MS605SN.MS605FM210727None   L10V, I15V, M36I, R57K, L63P, I64L, I93LD
Lunar (2013)13869-0813869-08JX046414None   I13V, K14KR, I15IV, K20I, M36I, R41K, K43R, L63PD
Masimba (2013)TZ1TZ1KC537065None  L33IT12PS, G16GE, M36T, N37NT, P39S, R41RK, Q61E, L63P, I64VD
Smolen-Dzirba (2013)WJK11WJK11JN811577None   L10I, I13V, I15V, L19I, E35N, P39Q, R41K, I62V, L63P, I93LD
 AJK10AJK10JN811576None   L10I, I13V, E35D, P39Q, R41K, I62V, L63P, I93LD
 LJE610LJE610JN811569None   L10I, I13V, I15V, N37S, P39Q, R41K, I62V, L63P, I93LD
Van Zyl (2013)11611134KC422903None   E35D, M36I, R41K, L63P, A71ATD
 15792948KC423907None   I13V, M36I, N37D, R41K, I62V, L63P, I64V, E65D, V77VID
 478174KC423369None  Q58EL10V, T12P, I13V, K20R, M36I, R41K, D60E, L63P, I64V, C67SD