| Author (yr) |
Patient |
Isolate |
Acc# |
PIs |
Wks | PIMajorDRMs |
PIMinorDRMs |
OtherMut | Subtype |
| Cornelissen (1997) | 92UG001 | 92UG001 | AF009395 | None | | | | E35D, M36I, R41K, L63P, H69Y, V77I | D |
| | 92UG021 | 92UG021 | AF009396 | None | | | | I13V, M36I, R41K, L63T, I64V, E65D | D |
| | 92UG024 | 92UG024 | AF009397 | None | | | | I13V, M36I, N37D, R41K, I64V | D |
| | 92UG038 | 92UG038 | AF009400 | None | | | | G16E, K20R, M36I, R41K, H69Y, I72V | D |
| | 92UG046 | 92UG046 | AF009401 | None | | | | I13V, M36I, R41K, I64V | D |
| | 92UG065 | 92UG065 | AF009404 | None | | | | M36I, R41K | D |
| | 92UG067 | 92UG067 | AF009405 | None | | | | L10I, M36I, N37K, R41K, I64V, H69Y | D |
| Gao (1998) | 94UG114 | 94UG114 | U88824 | None | | | | L10V, I13V, M36I, R41K, L63P, I64L | D |
| | 84ZR085 | 84ZR085 | U88822 | None | | | | L10V, E35D, M36I, R41K, Q61H | D |
| Neilson (1999) | MB2059 | MB2059 | AF133821 | None | | | | L10V, I13V, I15V, G16X, M36I, R41K, I64V, H69R | D |
| Becker-Pergola (2000) | 134.463 | BPG134-463 | AF216993 | None | | | | I13IV, M36I, R41K | D |
| | 230.298 | BPG230-298 | AF216990 | None | | | | I13V, M36I, R41K, I64V | D |
| | 326.662 | BPG326-662 | AF177360 | None | | | | M36I, N37ND, R41K, I64V | D |
| | 503.083 | BPG503-083 | AF216998 | None | | | | T12P, I13V, K14KR, M36I, R41K, D60DE, L63PS, I64IV | D |
| | 602.174 | BPG602-174 | AF216991 | None | | | | M36I, N37D, R41K | D |
| Holguin (2000) | AHHC18 | HolgHC19 | AF188350 | None | | | | I13V, K14R, I15V, K20I, E35Q, M36I, R41K, R57K, I64M, C67E, H69K, V82I, I85M, L89M | D |
| Nkengasong (2000) | JN_IC0068 | JN_IC0068 | AF216978 | None | | | | I13V, M36I, L38M, R41K, R57K, Q61N, L63P, I64V | D |
| Vergne (2000) | LVMP571 | LVMP571 | AJ286967 | None | | | | T12S, K14R, I15V, L19I, E35D, M36I, R41K, I62V | D |
| | LVMP634 | LVMP634 | AJ286968 | None | | | | L10V, I15V, L19V, E35D, M36I, R41K, R57K, I62V, L63S, H69Q, K70Q, V77I | D |
| | LVMP976 | LVMP976 | AJ286969 | None | | | Q58E | I15V, G16E, E35D, M36I, N37E, P39S, R41K, D60E, L63P | D |
| | LVMP1060 | LVMP1060 | AJ286970 | None | | | | T12S, I15V, E35D, M36I, R41K, I62V, I64V | D |
| Eshleman (2001) | SE830 | SE830 | AF388163 | None | | | | E35D, M36I, R41K, K45R, I62IV, L63P, I64L, H69Y, V77I | D |
| | SE750 | SE750 | AF388157 | None | | | | G16E, M36I, R41K, K45KR, Q61X, V77VI, L89LF | D |
| | SE549 | SE549 | AF388149 | None | | | | L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64V | D |
| | SE414 | SE414 | AF388141 | None | | | | I13V, E35D, M36I, P39Q, R41K, K45R, R57K, L63P, H69K, L89M | D |
| | SE887 | SE887 | AF388134 | None | | | L89LV | I13V, I15V, M36I, R41K, L63P, I64L | D |
| | SE868 | SE868 | AF388132 | None | | | | I13V, M36I, R41K, I62V, L63AS, I64IV, E65ED, H69Y | D |
| | SE782 | SE782 | AF388126 | None | | | | I13V, G16E, M36I, R41K, I64V | D |
| | SE779 | SE779 | AF388125 | None | | | | I13V, L19Q, M36I, R41K, I64V | D |
| | SE765 | SE765 | AF388124 | None | | | | L10I, I13V, K20KR, M36I, R41K, L63Q, I64V, H69Q | D |
| | SE755 | SE755 | AF388122 | None | | | | I13V, K14R, M36I, R41K, I64V | D |
| | SE748 | SE748 | AF388121 | None | | | | T12A, I13V, K14KR, I15V, M36I, R41K, I64V, H69K | D |
| | SE735 | SE735 | AF388119 | None | | | | I13V, M36I, R41K, I64V, H69HY | D |
| | SE723 | SE723 | AF388117 | None | | | | I13V, I15IV, L19LP, M36I, R41K | D |
| | SE612 | SE612 | AF388101 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69Q | D |
| | SE607 | SE607 | AF388099 | None | | | | I13V, K20R, M36I, R41K, I64V, I93IL | D |
| | SE578 | SE578 | AF388095 | None | | | | I13V, E35D, M36I, R41K, I62V, I64V, E65D | D |
| | SE561 | SE561 | AF388093 | None | | | | I13IV, K14KN, L19LI, K20KR, E35D, M36I, N37DE, R41K, H69K, K70R, L89M | D |
| | SE554 | SE554 | AF388092 | None | | | | M36I, R41K, I64V, H69Y | D |
| | SE483 | SE483 | AF388087 | None | | | | I13V, M36I, R41K, H69Y | D |
| | SE474 | SE474 | AF388085 | None | | | | E35D, M36I, R41K, L63C, I64V, I72IV | D |
| | SE459 | SE459 | AF388082 | None | | | | I13V, L19LI, M36I, R41K, I62V, I64V, K70R | D |
| | SE249 | SE249 | AF388073 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, D60E, H69K, L89M | D |
| | SE33 | SE33 | AF388065 | None | | | I50IF, L76I | I13V, M36I, R41K, L63P, I64V, A71T, I72IV, V77I | D |
| Eshleman (2001) | A028 | AF357631 | AF357631 | None | | | | K20R, M36I, R41K, R57K, L63M, I64V, H69Y | D |
| Weidle (2001) | PW_UG456 | PW_UG456 | AF358751 | None | | | | I13IV, K14KR, I15IV, M36I, R41K, I64V | D |
| | | PW_UG456a | | None | | | | I13IV, I15IV, M36I, R41K, I64V | D |
| | PW_UG458 | PW_UG458 | AF358752 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89M | D |
| | PW_UG465 | PW_UG465 | AF358755 | None | | | | I13V, I15V, M36I, R41K, L63Q, I64V, I72V | D |
| | | PW_UG465a | | None | | | | I13V, I15V, M36I, R41K, L63Q, I64V, I72V | D |
| | | PW_UG465b | | None | | | | I13V, I15V, M36I, R41K, L63Q, I64V, I72V | D |
| | PW_UG474 | PW_UG474 | AF358759 | None | | | | L10V, I13V, M36I, R41K, L63X, I64V | D |
| | | PW_UG474a | | None | | | | L10V, I13V, M36I, R41K, L63X, I64V | D |
| Yahi (2001) | NY_M40 | M40 | AY010404 | None | | | | E35D, M36I, R41K, R57RK, L63P, I64V, I93L | D |
| Cuevas (2002) | CU94 | CU94 | AF425475 | None | | | | K20R, E35D, M36I, R41K, K43R, L63P, H69Q | D |
| | CU73 | CU73 | AF425454 | None | | | | K14R, L19I, E35D, M36I, N37D, R41K, K43R, Q61D, L63P, H69Q, I93L | D |
| | CU67 | CU67 | AF425448 | None | | | | I13V, K20R, M36I, N37D, R41K, K43R, L63P, H69Q | D |
| | CU65 | CU65 | AF425446 | None | | | | E35D, M36I, N37D, R41K, K43R, L63P, I64L, H69Q, K70R, A71T, I72V | D |
| | CU64 | CU64 | AF425445 | None | | | | E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69Q | D |
| | CU61 | CU61 | AF425442 | None | | | T74P | K20R, E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69Q | D |
| | CU60 | CU60 | AF425441 | None | | | | I13V, K14R, G16E, K20M, E35D, M36I, R41K, K43R, L63P, H69Q, L89M | D |
| | CU57 | CU57 | AF425438 | None | | | | I13V, L19I, K20I, E35D, M36I, R41K, H69K, V82I, L89M | D |
| | CU45 | CU45 | AF425426 | None | | | | L10I, I13V, K20I, E35D, M36I, R41K, K45R, L63P, H69Q, L89M | D |
| | CU40 | CU40 | AF425421 | None | | | | I13V, K20R, M36I, R41K, K43R, Q61E, L63P, H69Q | D |
| | CU31 | CU31 | AF425412 | None | | | | E35D, M36I, R41K, K43R, L63P, H69Q | D |
| | CU29 | CU29 | AF425410 | None | | | | E35D, M36I, R41K, K43R, D60E, L63P, H69Q | D |
| | CU23 | CU23 | AF425404 | None | | | | L5Q, I15V, E35D, M36I, N37D, R41K, K43R, D60E, L63P, H69Q | D |
| | CU17 | CU17 | AF425398 | None | | | | T12K, L19I, E35D, M36I, R41K, L63P | D |
| | CU8 | CU8 | AF425389 | None | | | | K20R, E35D, M36I, N37D, R41K, K43R, L63P, H69Q, V77I | D |
| | CU7 | CU7 | AF425388 | None | | | | E35D, M36I, R41K, K43R, L63P, H69Q | D |
| Dowling (2002) | NKU3006 | NKU3006 | AF457090 | None | | | | I13V, K20R, M36I, N37D, R41K, I64V, E65D, K70R | D |
| | KER2017 | KER2017 | AF457056 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | D |
| Eshleman (2002) | 117886a | 117886a | AF410206 | None | | | | L10LV, I13IV, K14KR, I15IV, G16E, E35ED, M36I, N37ND, P39PS, R41K, L63X, H69KQ, I72IV, L89LM | D |
| | 124661e | 124661e | AF410212 | None | | | | I13V, M36I, R41K, L63P | D |
| | 127205r | 127205r | AF410216 | None | | | | I13V, K20KR, M36I, R41K, D60DE, I64V | D |
| | 129425g | 129425g | AF410217 | None | | | T74TP | I13V, K20KR, M36I, N37ND, R41K, Q61QE, I64V | D |
| | 137554u | 137554u | AF410229 | None | | | | I13V, M36I, R41K, L63T, I64V, E65ED | D |
| | 139934b | 139934b | AF410236 | None | | | | I13V, M36I, N37S, R41K, Q61N, I64V | D |
| | 144240v | 144240v | AF410241 | None | | | | I13V, M36I, R41K, I62IV, L63CHRY, I64V | D |
| | 147143w | 147143w | AF410247 | None | | | | I13V, M36I, R41RK, L63P, H69HY | D |
| | 148154f | 148154f | AF410250 | None | | | | I13V, K20R, M36I, R41K, I62V, L63P, I64L | D |
| | 149262u | 149262u | AF410252 | None | | | | M36I, R41K, D60E, I64V, I72V | D |
| Fonjungo (2002) | CM11 | CM11 | AF406731 | None | | | L33I | E35D, M36I, R41K, L63P, I64M, H69Y, I72T, I93L | D |
| | CM238 | CM238 | AF406728 | None | | | | I15V, L19Q, E35D, M36I, L63P, H69Q, I93L | D |
| | CM231 | CM231 | AF406725 | None | | | | I15V, E35D, M36I, R41K, R57K, I93L | D |
| | CM230 | CM230 | AF406724 | None | | | | I15V, E35D, M36I, R41K, R57K, I64V, I93L | D |
| | CM221 | CM221 | AF406722 | None | | | | I15V, E35D, M36I, R41K, L63P, I93L | D |
| | CM184 | CM184 | AF406716 | None | | | | G16E, K20R, M36I, R41K, I62V, L63N, I72T, I93L | D |
| | CM175 | CM175 | AF406714 | None | | | | T12S, I15V, L19I, E35D, M36I, R41K, I62V, I93L | D |
| | CM145 | CM145 | AF406712 | None | | | | L10V, I15V, E35D, M36I, R41K, L63P, H69Q, I93L | D |
| Gibb (2002) | DMG88 | 88_w-21 | | None | | | | I13V, K14R, K20M, M36I, R41K, L63H, I64V, I72V | D |
| | DMG90 | 90_w-6 | | None | | | L10LF | I13V, I15IV, E35D, M36I, R41K, I64V, E65D | D |
| Hierholzer (2002) | SU053 | SU053 | AY102493 | None | | | | G16E, M36I, P39T, R41K, I62V, L63H, A71T | D |
| | SU224 | SU224 | AY102496 | None | | | | I15V, G16E, M36I, R41K, L63H, I72V | D |
| | SU249 | SU249 | AY102503 | None | | | | I15V, M36I, R41K, D60DE, I62V | D |
| Holguin (2002) | AH_M1296 | AH_M1296 | AF247021 | None | | | | L19I, M36I, R41K, R57K, L63S | D |
| Koulinska (2002) | TZBFL0086 | TZBFL0086 | AF442566 | None | | | | I13V, I15V, E35D, M36I, R41K | D |
| | TZBFL0011 | TZBFL0011 | AF442569 | None | | | | G16E, M36I, N37K, R41K, I64V, C67D, T91A | D |
| | TZBFL0088 | TZBFL0088 | AF442570 | None | | | | I13V, K14R, M36I, P39A, R41K, I64V, V77I | D |
| Pandrea (2002) | IP_97CIRMF08 | 97CIRMF08 | AY140611 | None | | | L33I | L10I, I13V, M36I, R41K, Q61N, L63S, I64V, C67Y | D |
| | IP_97CIRMF26 | 97CIRMF26 | AY140613 | None | | | K43T | I15V, E35D, M36I, N37K, R41K, R57K, I62V, H69Q | D |
| | IP_97CIRMF27 | 97CIRMF27 | AY140614 | None | | | L33I | E35D, M36I, R41K | D |
| Vergne (2002) | LV19 | LV19 | AJ313419 | None | | | L33I | Q18L, L19I, E35D, M36I, P39S, R41K, Q61H, L63P, H69Y, I72V | D |
| | LV02B | LV02B | AJ313404 | None | | | | I15V, E35D, M36I, R41K, R57K, K70R | D |
| Huang (2003) | UG274 | UG274 | AF447845 | None | | | | I13IV, M36I, R41K, I64V | D |
| Jorgensen (2003) | JLB_Pat15 | HIM419441 | AJ419441 | None | | | V11VI | I13V, K14KR, I15IV, K20KR, M36I, R41K, I64V | D |
| Maljkovic (2003) | MI_Pat64 | 99SE17094 | AY165212 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| Vergne (2003) | VL01SN55HPD | 01SN55 | AJ583749 | None | | | | G16E, E35D, M36I, R41K, Y59H, Q61N | D |
| Vidal (2003) | 99TCDMN011 | 99TCDMN011 | AJ488926 | None | | | | I15V, L19Q, E35D, M36I, R41K, D60E, L63P, I64V, K70T, I72V | D |
| | 99TCDMN012 | 99TCDMN012 | AJ488927 | None | | | | E35D, M36I, N37D, R41K, D60E, I62V, I64V | D |
| | HIM519488 | HIM519488 | AJ519488 | None | | | | I15V, L19Q, E35D, M36I, R41K, D60E, L63P, I64V, K70T, I72V | D |
| | HIM519489 | HIM519489 | AJ519489 | None | | | | E35D, M36I, N37D, R41K, D60E, I62V, I64V | D |
| Eshleman (2004) | SE750 | SE750_7d | AY428719 | None | | | | G16E, M36I, R41K, K45KR, Q61X, V77VI, N83NY, L89LF | D |
| | SE549 | SE549_7d | AY428693 | None | | | | L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64V | D |
| | SE243 | SE243_7d | AY428681 | None | | | | M36I, N37S, R41K, I64V, H69Y | D |
| | SE868 | SE868p | AY435400 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, H69Y | D |
| | | SE868_7d | AY428731 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, H69Y | D |
| | SE779 | SE779_7d | AY428722 | None | | | | I13V, L19Q, M36I, R41K, I64V | D |
| | SE748 | SE748_7d | AY428716 | None | | | | T12A, I13V, I15V, M36I, R41K, I64V, H69K | D |
| | SE735 | SE735_7d | AY428713 | None | | | | I13V, K20KR, M36I, R41K, I64V, H69Y | D |
| | SE612 | SE612_7d | AY428704 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69Q | D |
| | SE561 | SE561_7d | AY428694 | None | | | | I13IV, K14KN, G16GE, L19LI, K20KR, E35D, M36I, N37D, R41K, H69K, K70R, L89M | D |
| | SE554 | SE554_7d | AY428698 | None | | | | M36I, R41K, I64V, H69Y | D |
| | SE474 | SE474_7d | AY428692 | None | | | | E35ED, M36I, R41K, L63C, I64V, I72IV | D |
| Eshleman (2004) | ESH_Pat4 | ESH464 | AY435275 | None | | | | I13V, M36I, R41K, L63X, I64V | D |
| | ESH_Pat8 | ESH682 | AY435344 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | ESH_Pat10 | ESH829 | AY435370 | None | | | | I13IV, M36I, R41K, L63IT, I64LV, E65ED, L89LM | D |
| | ESH_Pat17 | ESH182 | AY435242 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, L63S, H69K, I72IT, L89M | D |
| | ESH_Pat31 | ESH766 | AY435352 | None | | | | K14KR, I15V, M36I, R41K, K70R | D |
| | ESH_Pat36 | ESH404 | AY425349 | None | | | | G16E, K20R, M36I, P39S, R41K, H69HY | D |
| Eshleman (2004) | | SE404_7d | AY428684 | None | | | | G16E, K20R, M36I, P39S, R41K, H69HY | D |
| Eshleman (2004) | ESH_Pat40 | ESH620 | AY435316 | None | | | | I13V, L19IV, M36I, R41K, D60DE, I62IV, I64IV | D |
| | ESH_Pat43 | ESH624 | AY435321 | None | | | | M36I, R41K, I64V, E65D | D |
| | ESH_Pat46 | ESH52 | AY435233 | None | | | | T12TA, M36I, R41K, D60E, I64V | D |
| | ESH_Pat47 | ESH626 | AY435323 | None | | | | I13V, L24LF, M36I, R41K, R57K, L63P, C67Y | D |
| | ESH_Pat48 | ESH553 | AY435307 | None | | | | L10V, M36I, R41K | D |
| | ESH_Pat49 | ESH55 | AY435230 | None | | | | E35D, M36I, N37ND, R41RK, Q61QH, L63T, I64V, E65D, I72IV | D |
| Eshleman (2004) | | SE55_7d | AY428673 | None | | | | E35D, M36I, N37ND, R41RK, L63T, I64V, E65D, I72IV | D |
| Eshleman (2004) | ESH_Pat53 | ESH484 | AY435284 | None | | | | I13V, M36I, R41K, I64V | D |
| | ESH_Pat64 | ESH410 | AY435266 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, L63C, I64V | D |
| | ESH_Pat67 | ESH418 | AY425352 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | ESH_Pat70 | ESH634 | AY435326 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M | D |
| | ESH_Pat75 | ESH66 | AY435235 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | D |
| Eshleman (2004) | | SE66_7d | AY428674 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | D |
| Eshleman (2004) | ESH_Pat79 | ESH853 | AY435372 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | ESH_Pat81 | ESH499 | AY435297 | None | | | | I13V, M36I, R41K, Q61QH, I64V | D |
| | ESH_Pat83 | ESH857 | AY435383 | None | | | | L10GV, I13V, M36I, R41K, L63S, I64V | D |
| | ESH_Pat84 | ESH784 | AY435359 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| Eshleman (2004) | | SE784_7d | AY428720 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| Eshleman (2004) | ESH_Pat86 | ESH207 | AY435254 | None | | | | I13V, E35D, M36I, R41K, K45KR, H69K, L89M | D |
| | ESH_Pat90 | ESH428 | AY435277 | None | | | | I13V, K20KR, E35D, M36I, R41K, K45R, R57K, I64L, H69K, L89M | D |
| | ESH_Pat95 | ESH719 | AY435348 | None | | | | G16GE, E35DH, M36I, N37NH, R41K, L63A | D |
| | ESH_Pat96 | ESH647 | AY435325 | None | | | | L10V, I13V, K20R, M36I, R41K, I64V, E65D, I72V | D |
| | ESH_Pat97 | ESH860 | AY435388 | None | | | | I13V, M36I, R41K, I64V | D |
| | ESH_Pat100 | ESH212 | AY435244 | None | | | | M36I, R41K, K45KR, R57K, Q61N, I64IV, E65ED, C67CY, H69Y, I72T | D |
| | ESH_Pat115 | ESH729 | AY435342 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M | D |
| | ESH_Pat119 | ESH586 | AY435313 | None | | | | I13V, M36I, R41K, K45KR, L63PQ, I64V | D |
| | ESH_Pat124 | ESH875 | AY435382 | None | | | | I15V, E35D, M36I, R41K, I64V, K70KR | D |
| | ESH_Pat131 | ESH512 | AY425351 | None | | | | I13V, Q18H, M36I, N37NS, R41K, L63C, I64V | D |
| Eshleman (2004) | | SE512_7d | AY428689 | None | | | | I13V, Q18H, M36I, N37NS, R41K, L63C, I64V | D |
| Eshleman (2004) | ESH_Pat134 | ESH158 | AY435243 | None | | | | I13V, M36I, R41K, I64V, E65D | D |
| | ESH_Pat138 | ESH9 | AY435221 | None | | | | I13V, M36I, N37ND, R41K, D60E, L63P, I64V, G68GE | D |
| Eshleman (2004) | | SE9_7d | AY428669 | None | | | | I13V, M36I, N37ND, R41K, D60E, L63P, I64V | D |
| Eshleman (2004) | ESH_Pat158 | ESH238 | AY435257 | None | | | | I13IV, M36I, R41K, I64V | D |
| | ESH_Pat162 | ESH525 | AY435294 | None | | | | I13V, L33V, M36I, R57K, L63LP, I64V, H69Y, I72V | D |
| | ESH_Pat164 | ESH740 | AY435350 | None | | | | I13V, G16GE, M36I, R41K, I64V, I72T | D |
| Eshleman (2004) | | SE740_7d | AY428714 | None | | | | I13V, G16GE, M36I, R41K, I64V, I72T, T96TP | D |
| Eshleman (2004) | ESH_Pat165 | ESH815 | AY435362 | None | | | | I13V, M36I, P39AS, R41K, D60E, I62V, L63P, I64V | D |
| | ESH_Pat172 | ESH675 | AY435338 | None | | | | M36I, R41K, K43KR, K45KR, I62V, L63H, I64M | D |
| | ESH_Pat174 | ESH170 | AY435258 | None | | | | I13IV, I15IV, K20KR, M36I, N37ND, R41K, L63LP, I64V | D |
| | ESH_Pat177 | ESH531 | AY435308 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, L63S, H69K, K70KR, L89M | D |
| Eshleman (2004) | ABB21 | ABB21 | AY444272 | None | | | | E35D, M36I, N37ND, R41RK, L63LP | D |
| | ABB208 | ABB208 | AY444271 | None | | | | E35D, M36I, R41K, I62V, L63P, H69Q | D |
| | 99_237 | 99_237 | AY444270 | None | | | | I13V, K20R, M36I, R41K, I62IV, I64V | D |
| | 128_318 | 128_318 | AY444262 | None | | | | I13V, M36I, R41K, I64V | D |
| | 326_662 | 326_662 | AY444267 | None | | | | M36I, N37ND, R41K, I64V | D |
| | 503_083 | 503_083 | AY444268 | None | | | | T12TP, I13V, K14KR, M36I, R41K, R57RK, D60DE, L63PS, I64IV, E65ED | D |
| | 60274 | 60274 | AY444269 | None | | | | M36I, N37D, R41K | D |
| | 2387801 | 2387801 | AY444265 | None | | | | I13V, L19I, M36I, R41K, Q61N | D |
| Fang (2004) | ML249_3_1997 | 249_3_1997 | AY322187 | None | | | | L19I, M36I, R41K, L63P | D |
| Grossman (2004) | 17745Pr115 | 17745Pr115 | AY529625 | None | | | | G16E, K20R, M36I, P39S, R41K, D60E, I62V, L63P | D |
| Kijak (2004) | 0009BBY | 01CM.0009 | AY371155 | None | | | | I15V, E35D, M36I, R41K, I62V, L63P, H69Q | D |
| | 0175BA | 01CM.0175 | AY371156 | None | | | | I15V, E35D, M36I, R41K, L63P, H69Q | D |
| | 4412HAL | 01CM.4412 | AY371157 | None | | | | E35D, M36I, R41K, L63P, H69Q | D |
| Konings (2004) | KF_Pat1 | 00CM3147 | AY359683 | None | | | | I15V, E35D, M36I, R41K, L63S, I64V, I72V, V77I, N98I | D |
| | KF_Pat4 | 00CM4877 | AY359686 | None | | | | L10V, T12S, L19I, E35D, M36I, R41K, L63Q, I64V | D |
| | KF_Pat5 | 00CM1911 | AY359687 | None | | | | I15V, E35D, M36I, R41K, L63Q | D |
| | KF_Pat6 | 00CM1457 | AY359688 | None | | | | L10V, I15V, E35D, M36I, R41K, L63P, H69Q, I93L | D |
| | KF_Pat7 | 00CM1705 | AY359689 | None | | | | T12S, E35D, M36I, R41K, D60E, I62V, L63P, H69Q | D |
| | KF_Pat8 | 00CM1545 | AY359690 | None | | | | I15V, G16E, E35D, M36I, R41K, I62V | D |
| Servais (2004) | SJ_Pat4 | SJKLM013 | AJ412940 | None | | | | I13V, M36I, R41K, L63LP, I64IV, H69Y | D |
| | SJ_Pat25 | SJKLM007 | AJ412934 | None | | | | K14R, L19I, M36I, R41K, L63P | D |
| Snoeck (2004) | BE28 | BE28 | AY900735 | None | | | | E35D, M36I, R41K, R57K, Q61H, L63P | D |
| Yang (2004) | 97KE004 | 97KE004 | AY492752 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89M | D |
| | 97KE140 | 97KE140 | AY492758 | None | | | | I13V, Q18H, M36I, R41K, I64V, H69Y | D |
| | 99KE504 | 99KE504 | AY492771 | None | | | | I13V, M36I, R41K, I64V | D |
| | 00KE558 | 00KE558 | AY492775 | None | | | | R8G, P9G, L10P, I13V, M36I, R41K, L63P, I64L, H69Q, I72V | D |
| | 96KE011 | 96KE011 | AY492776 | None | | | | K14R, M36I, R41K, I64V, H69C | D |
| | 96KE006 | 96KE006 | AY492783 | None | | | | K14R, M36I, R41K, I64V | D |
| Bellocchi (2005) | 779 | MT000779 | GU199581 | None | | | | I13V, M36I, R41K, L63E, I64IM, H69Y | D |
| Brown (2005) | BB_93UG_065 | 93UG_065 | AY713418 | None | | | | M36I, R41K, K70N | D |
| Casado (2005) | CU7 | CU7 | AY894994 | None | | | | E35D, M36I, R41K, K43R, L63P, H69Q | D |
| | Cu64 | Cu64 | AY894995 | None | | | | E35D, M36I, N37D, R41K, K43R, D60E, Q61E, L63P, H69Q | D |
| Ciccozzi (2005) | MC_AY611648 | D59 | AY611648 | None | | | | M36I, R41K, L63Q, I64V, E65D, V77I | D |
| Grossman (2005) | 17145 | 17145PR424 | | None | | | | G16E, K20R, M36I, P39S, R41K, D60E, I62V, L63P | D |
| K'Aluoch (2005) | OK_TC021304 | TC021304 | DQ079836 | None | | | Q58E | I13V, M36I, R41K, L63P | D |
| | OK_TC021104 | TC021104 | DQ079838 | None | | | | T12P, I13V, L19I, K20R, M36I, R41RK, K45KN, Q61E, I64IV, C67W, H69Y, I72V, V77VI | D |
| | OK_TC011103 | TC011103 | DQ079842 | None | | | | I13V, M36I, R41K, K45R, I64V | D |
| | OK_TC011003 | TC011003 | DQ079843 | None | | | | I13V, E35D, M36I, N37D, I64V | D |
| | OK_TC008803 | TC008803 | DQ079849 | None | | | | L10LI, I13V, Q18E, M36I, R41K, L63Q, I64V | D |
| | OK_TC008303 | TC008303 | DQ079851 | None | | | | I13IV, K20R, M36I, R41K, I62V, I64V | D |
| | OK_TC007703 | TC007703 | DQ079854 | None | | | | L10IV, I13V, M36I, P39S, R41K, I62V, L63P, I64V | D |
| | OK_TC007103 | TC007103 | DQ079855 | None | | | | I13V, K20R, M36I, R41K, R57K, L63P, I64V, H69Y, I72V | D |
| | OK_TC006803 | TC006803 | DQ079856 | None | | | | K20R, M36I, R41K, I62V, I64V, E65D, I72V | D |
| | OK_TC006403 | TC006403 | DQ079857 | None | | | | I13V, K14R, I15V, M36I, R41K, I64V | D |
| Non-B Workgroup (2005) | UK1446 | UK1446 | AY900802 | None | | | | K20R, M36I, R41K, I62V, I64V, I72V | D |
| | UK1972 | UK1972 | AY900826 | None | | | | E35D, M36I, R41K, L63Q, I64V, E65D | D |
| | UK4834 | UK4834 | | None | | | | I13V, K20R, M36I, R41K, L63P, I64V, H69Y, I72V, V77I | D |
| | UK4684 | UK4684 | AY901208 | None | | | | L10V, I13V, K20R, M36I, N37D, R41K, D60E, I64V | D |
| | TK1008 | TK1008 | | None | | | | M36I, R41K, I64V | D |
| | TK2009 | TK2009 | | None | | | | T12A, I15V, M36I, R41K, D60E, I62V, L63T, I64V, I72T | D |
| | TK5003 | TK5003 | | None | | | | I13V, E35D, M36I, R41K, I64V, K70R | D |
| Saad (2005) | SM_02YE516 | 02YE516 | AY795907 | None | | | | K14N, L19Q, E35D, M36I, N37D, R41K, D60E, I62V, I64V | D |
| Tovanabutra (2005) | 99US_MSC4068 | 99US_4068 | AY444799 | None | | | | I13V, L33V, M36I, R41K, I64V, I72V | D |
| Weber (2005) | 01F8686 | 01F8686 | AY677486 | None | | | | I13V, K14R, I15V, M36I, R41K, I62V, L63P, I64V | D |
| Jayaraman (2006) | 1-00-0023 | 1-00-0023 | | None | | | | D25E, M36I, R41K, R57T, Q92K | D |
| Koizumi (2006) | YK_04CM063 | YK_04CM063 | DQ461854 | None | | | | I13V, K14R, K20I, M36I, R41K, H69K, L89M | D |
| Ojesina (2006) | AIO_DDJ134 | AIO_DDJ134 | DQ273935 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, L63I, H69K, L89M | D |
| Rodrigues (2006) | BR04RS109 | BR04RS109 | DQ070615 | None | | | | L10V, I15V, M36I, N37K, R41N, H69K, L89M | D |
| | BR04RS114 | BR04RS114 | DQ070614 | None | | | | I15V, M36I, N37K, R41N, D60E, H69K, L89M | D |
| | BR04RS195 | BR04RS195 | DQ070596 | None | | | | K14T, I15V, L19Q, K20R, M36I, N37K, R41E, R57K, D60Y, Q61N, I62V, L63S | D |
| Vergne (2006) | LV_02CM-CK1_2 | 02CM-2 | AM181792 | None | | | | E35D, M36I, R41K, R57RK, D60E, L63P, H69C | D |
| Vessiere (2006) | AV_M10046N | AV_M10046N | DQ297232 | None | | | | E35D, M36I, N37D, R41K | D |
| | AV_M3683N | AV_M3683N | DQ297260 | None | | | | I15V, E35D, M36I, R41K | D |
| | AV_M9416N | AV_M9416N | DQ297220 | None | | | | T12S, I15V, L19I, E35D, M36I, N37D, R41K | D |
| Vidal (2006) | NV_KIST103 | 02.KIST103 | AM041026 | None | | | | E35D, M36I, R41K, R57K, Q61N, H69Q, I93L | D |
| | NV_KIST132 | 02.KIST132 | AM041030 | None | | | | I13V, K20R, M36I, R41K, I62V, L63P, C67Y, K70R | D |
| | NV_KSFE141 | 02.KSFE141 | AM040994 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | NV_KTB242 | 02.KTB242 | AM040997 | None | | | | I15V, G16E, K20R, E35D, M36I, R41K, K45R, L63A, H69K, L89M, I93L | D |
| | NV_LBFE012 | 02.LBFE012 | AM041003 | None | | | | T12S, I15V, L19I, M36I, R41K, I62V, L63P, H69Y | D |
| | NV_LBS038 | 02.LBS038 | AM041035 | None | | | | K20R, M36I, R41K, Q61E, L89M | D |
| | NV_MBFE252 | 02.MBFE252 | AM041024 | None | | | | E35D, M36I, R41K, R57K, Q61H, I62V, L63P, H69N, I93L | D |
| Baker (2007) | 9593OA | 02-9593OA | AY803465 | None | | | | I15V, L19A, M36I, R41K, L63P | D |
| | 6580SP | 03-6580SP | AY803466 | None | | | | K14R, M36I, R41K, L63P, I64V | D |
| | 9454KI | 03-9454KI | AY803475 | None | | | | L10V, I13V, M36I, R41K, I64V, E65D | D |
| | 0351NG | 04-0351NG | AY803476 | None | | | | M36I, R41K, I62V, L63S, I64M | D |
| | 0079BS | 04-0079BS | AY803478 | None | | | | I13V, M36I, R41K, I64V | D |
| | TC0257 | TC025704 | AY803487 | None | | | | T12S, I13V, K14R, I15IV, M36I, R41K, L63P, I72V | D |
| | P0006 | P0006-120105 | EF186132 | None | | | | I15V, M36I, R41K, I64V | D |
| | P0043 | P0043-160205 | EF186135 | None | | | | E35D, M36I, R41K, I64V, I72V | D |
| | P0062 | P0062-070305 | EF186139 | None | | | | I13V, M36I, R41K, L63P, I64IV | D |
| | P0086 | P0086-230305 | EF186141 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, H69Y, N98K | D |
| | P0169 | P0169-300505 | EF186144 | None | | | | T12K, I15V, L19Q, K20R, M36I, R41K, L63S, V77I | D |
| | P0285 | P0285-070905 | EF186149 | None | | | | I13V, K20R, M36I, R41K, L63Q, I64V | D |
| | A1014 | MBA1014-090805 | EF186202 | None | | | | T12Q, I13V, M36I, R41K, I62V, L63S, I64V | D |
| | A1040 | MBA1040-190905 | EF186213 | None | | | | I13V, K20R, M36I, P39T, R41K, L63P, A71V, I93L | D |
| | A1043 | MBA1043-200905 | EF186214 | None | | | I47IM | I13V, K20R, M36I, R41K, I64V, E65ED, I72IV | D |
| | A1044 | MBA1044-200905 | EF186215 | None | | | | I13V, K20R, M36I, R41K, I64V, E65D | D |
| | A1050 | MBA1050-171005 | EF186216 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | A1059 | MBA1059-081105 | EF186220 | None | | | | I13V, L33V, M36I, N37T, P39S, R41K, L63Q, I64V, I72V, V82VI | D |
| Brumme (2007) | 1432 | PRRT_1432 | EF368742 | None | | | | I13V, G16A, E21G, E35D, M36I, R41K, R57K, H69K, L89M | D |
| Church (2007) | 009-107995N | 009 | EF611992 | None | | | | I13V, M36I, R41K, D60E, L63P, I64V, V77VI | D |
| | 033-109176I | 033 | EF611998 | None | | | | I13IV, M36I, R41K, L63LP, I64V, A71T, V77I | D |
| | 052-110957Q | 052 | EF612005 | None | | | | T12TA, M36I, R41K, D60E, I64V | D |
| | 055-111458T | 055 | EF612006 | None | | | | E35D, M36I, N37ND, R41RK, L63T, I64V, E65D, I72V | D |
| | 158-117946J | 158 | EF612012 | None | | | | I13V, M36I, R41K, I64V, E65D | D |
| | 170-118342Q | 170 | EF612013 | None | | | | I13V, K20KR, M36I, R41K, L63LFPS, I64V | D |
| | 418-124277n | 418 | EF612023 | None | | | | I13V, K20R, M36I, R41K, I64V, K70KR | D |
| | 459-126676y | 459 | EF612034 | None | | | | I13V, L19LI, M36I, R41K, I62V, I64V, K70R | D |
| | 464-126829V | 464 | EF612035 | None | | | | I13V, M36I, R41K, L63LH, I64V | D |
| | 474-125849j | 474 | EF612038 | None | | | | E35D, M36I, R41K, L63C, I64V, I72IV | D |
| | 483-125847p | 483 | EF612040 | None | | | | I13V, M36I, R41K, H69Y | D |
| | 484-126531U | 484 | EF612041 | None | | | | I13V, M36I, R41K, I64V | D |
| | 497-126960M | 497 | EF612046 | None | | | | I13V, K14KR, E35D, M36I, R41K, E65ED, H69K, L89M | D |
| | 499-126989D | 499 | EF612047 | None | | | | I13V, M36I, R41K, I64V | D |
| | 512-128108h | 512 | EF612051 | None | | | | I13V, Q18H, M36I, R41K, L63C, I64V | D |
| | 525-128845B | 525 | EF612057 | None | | | | I13V, L33V, M36I, R57K, I64V, H69Y, I72V | D |
| | 537-129767s | 537 | EF612059 | None | | | | I13V, M36I, R41K, I64V, H69Y, I72IV | D |
| | 553-130284W | 553 | EF612063 | None | | | | L10V, I15IV, M36I, R41K | D |
| | 554-129561n | 554 | EF612064 | None | | | | I13IV, K14KR, M36I, R41K, I64V, H69Y | D |
| | 578-131089x | 578 | EF612071 | None | | | | I13V, E35D, M36I, R41K, I62V, I64V, E65D | D |
| | 583-130907L | 583 | EF612074 | None | | | | L10IV, T12TA, K14KR, I15IV, M36I, R41K, D60E, H69HY | D |
| | 586-131433R | 586 | EF612076 | None | | | | I13IV, K20R, M36I, R41K, I64V, I93IL | D |
| | 607-132924v | 607 | EF612079 | None | | | | I13V, M36I, R41K, K45KR, L63PQ, I64V | D |
| | 612-132691o | 612 | EF612081 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69HQ | D |
| | 620-132424Y | 620 | EF612084 | None | | | | I13V, L19IV, K20KR, M36I, R41K, D60DE, I62IV, I64IV | D |
| | 624-132006Y | 624 | EF612087 | None | | | | M36I, R41K, I64V, E65D | D |
| | 626-134055S | 626 | EF612088 | None | | | | I13V, M36I, R41K, R57K, L63P, C67Y | D |
| | 647-135041K | 647 | EF612093 | None | | | | L10V, I13V, K20R, M36I, R41K, L63LIRS, I64V, E65D, I72V | D |
| | 682-135474Y | 682 | EF612105 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | 735-138266a | 735 | EF612124 | None | | | | I13V, K20KR, M36I, R41K, I64V, H69HY | D |
| | 740-140258N | 740 | EF612126 | None | | | | I13V, G16GE, M36I, R41K, I64V, I72T | D |
| | 748-140764t | 748 | EF612130 | None | | | | T12A, I13V, I15V, M36I, R41K, I64V, H69K | D |
| | 750-138912e | 750 | EF612131 | None | | | | G16E, M36I, R41K, R57RK, Q61QDEH, V77VI, L89LF | D |
| | 755-140259a | 755 | EF612133 | None | | | | I13V, K14R, M36I, R41K, I64V | D |
| | 765-140409O | 765 | EF612137 | None | | | | L10I, I13V, K20KR, M36I, R41K, L63Q, I64V, H69Q | D |
| | 766-141840J | 766 | EF612138 | None | | | | K14KR, I15V, M36I, R41K, L63LP, E65ED, K70R | D |
| | 770-141405W | 770 | EF612139 | None | | | | T12TA, I13V, K14KR, G16GE, L33V, M36I, R41K, D60DE, I62V, L63C, I64V | D |
| | 779-142647t | 779 | EF612142 | None | | | | I13V, L19Q, M36I, R41K, I64V | D |
| | 784-140964H | 784 | EF612145 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | 815-145489E | 815 | EF612157 | None | | | | I13V, M36I, P39A, R41K, D60E, I62V, L63P, I64V | D |
| | 853-146278M | 853 | EF612170 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | 857-146456T | 857 | EF612171 | None | | | | L10V, I13V, M36I, R41K, L63S, I64V | D |
| | 860-147276P | 860 | EF612172 | None | | | | I13V, M36I, R41K, I62IV, I64V | D |
| | 875-147807H | 875 | EF612177 | None | | | | I15V, E35D, M36I, R41K, I64V, K70KR | D |
| | 887-148290B | 887 | EF612182 | None | | | L89LV | I13V, I15V, M36I, R41K, L63P, I64L | D |
| | 141315i | 141315i | EF612187 | None | | | | I13V, G16E, M36I, R41K, I64V | D |
| Galluzzo (2007) | M22490 | UG_M22490 | JQ220069 | None | | | | I13V, E35D, M36I, R41K, L63Q, I64V, K70R | D |
| | M22900 | UG_M22900 | JQ220085 | None | | | | I13V, E35D, M36I, R41K, L63P, I64L, F99FL | D |
| | M21740 | UG_M21740 | JQ220089 | None | | | | K20R, M36I, R41K, I62V, L63T, I64V, E65D, H69Y, I72EV | D |
| | M22700 | UG_M22700 | JQ220091 | None | | | | I13V, M36I, R41K, D60DE, L63LH, I64V | D |
| | M22720 | UG_M22720 | JQ220093 | None | | | | I13V, M36I, R41K, L63Q, I64V | D |
| | M22840 | UG_M22840 | JQ220097 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, I72V | D |
| | M20810 | UG_M20810 | JQ220125 | None | | | | L10V, I13V, I15V, M36I, R41K, I64V | D |
| | M20830 | UG_M20830 | JQ220127 | None | | | | I13V, L33LV, M36I, R41K, R57RK, I64V, E65D | D |
| | M21170 | UG_M21170 | JQ220131 | None | | | | M36I, R41K, L63S, I64V | D |
| Gatanaga (2007) | C04-5555-6386-1 | C04-5555-6386-1 | AB640462 | None | | | | I13V, I15IV, G16GE, M36I, N37ND, R41K, L63T, I64V, E65D, I72V | D |
| Kassu (2007) | ETH-G-230 | G-230 | AB285830 | None | | | | T12P, G16E, L19M, M36I, R41K, L63T, E65D, K70R, I72T, I93L | D |
| Varella (2007) | 29ini | 29ini | | None | | | | T12E, K14R, E35D, M36I, R41K, D60E, Q61E, L63P | D |
| von Wyl (2007) | 126 | 10517835 | EF449780 | None | | | | L10V, I15IV, E35D, M36I, R41K, L63PS, I72AV | D |
| | 80 | 1797997 | EF449958 | None | | | | T12A, I13V, L19I, E35D, M36I, R41K, Q61N, L63S, I72T | D |
| Caron (2008) | 1345 | Gab1345P | EU556459 | None | | | L33I | E35N, M36I, R41K, Q61H, L63P, K70E, I72V | D |
| Church (2008) | 361159H | 361159H | EU380728 | None | | | | I13V, I15V, M36I, R41K, I64V, H69Y, T96TP | D |
| | 370581-G | 370581-G | EU380739 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | 391100H | 391100H | EU380747 | None | | | | I13V, K20M, E35D, M36I, R41K, I64V, H69Q | D |
| | 402787T | 402787T | EU380752 | None | | | | I13V, G16E, M36I, R41K, L63C, I64V, I72T | D |
| | 467634E | 467634E | EU380766 | None | | | | M36I, R41K, I64V, I85V | D |
| Delgado (2008) | GH_046 | GH_046 | EU177919 | None | | | | T12TA, I13V, K20I, M36I, R41K, Q61N, L63N, I64IM | D |
| Holguin (2008) | SP4-341752 | SP4-341752 | EU255489 | None | | | | I15V, E35D, M36I, R41K, R57K, L63P | D |
| | SP26-351157 | SP26-351157 | EU255511 | None | | | | E21EK, M36I, N37D, R41K, I64V, H69Y | D |
| | SP15-320310 | SP15-320310 | EU342798 | None | | | | M36I, R41K, D60E, H69K | D |
| Land (2008) | ML1076 | ML1076 | EU110086 | None | | | | I13V, G16E, M36I, R41K, I72V | D |
| | ML1956 | ML1956 | EU110089 | None | | | | L10I, I13V, I15V, M36I, R41K, L63T, H69Q | D |
| Ndembi (2008) | CMYD-3 | 04CMYD-3 | DQ990378 | None | | | | E35D, M36I, R41K, L63R, K70E, R87K | D |
| | CMYD-24 | 04CMYD-24 | DQ990397 | None | | | | T12S, I15X, L19I, E35D, M36I, R41K, I64V | D |
| | CMYD-56 | 04CMYD-56 | DQ990421 | None | | | | L10V, I13V, G17D, K20R, E35D, M36I, R41K, L63T, H69Q | D |
| | CMYD-57 | 04CMYD-57 | DQ990422 | None | | | | I15V, L19I, E35D, M36I, N37E, R41K | D |
| Ndembi (2008) | IAEAM009 | IAEAM009 | EU306748 | None | | | | L10V, I13V, G16E, M36I, P39L, R41K, I62V, L63S, I64V, H69Y, I72V | D |
| | IAEM010 | IAEM010 | EU306749 | None | | | | I13V, M36I, R41K, L63P | D |
| | IAEM011 | IAEM011 | EU306750 | None | | | | I13V, L19I, M36I, N37D, R41K, D60G, I62V, L63P, I64V, C67S, K70R | D |
| | IAEM030 | IAEM030 | EU306762 | None | | | | I13V, E35D, M36I, N37T, R41K, L63P | D |
| | IAEM035 | IAEM035 | EU306766 | None | | | | I13V, K20R, M36I, R41K, D60E, Q61E, I62V, I64V, V75I | D |
| | IAEM036 | IAEM036 | EU306767 | None | | | | I13V, M36I, R41K, L63S, I64V | D |
| | IAEM047 | IAEM047 | EU306774 | None | | | | I13V, M36I, R41K, I64V, H69Y, K70KR | D |
| | IAEM048 | IAEM048 | EU306775 | None | | | | I13V, K14R, M36I, R41K, I64V, K70R | D |
| | IAEM066 | IAEM066 | EU306785 | None | | | | I13V, K20R, M36I, N37S, R41K, R57K, L63Q, I64V, E65D | D |
| | IAEM068 | IAEM068 | EU306787 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | IAEM070 | IAEM070 | EU306789 | None | | | | I13V, G16E, M36I, N37D, L63A, I64V, E65D, K70R, I72V | D |
| | IAEM071 | IAEM071 | EU306790 | None | | | | I13V, G16GE, M36I, N37D, L63A, I64V, E65D, K70R, I72V | D |
| | IAEM075 | IAEM075 | EU306792 | None | | | | I15V, M36I, N37D, R41K, L63C | D |
| | IAEM077 | IAEM077 | EU306793 | None | | | | M36I, N37D, R41K, D60E, I64V, I72V | D |
| Nyombi (2008) | TBK008 | TBK008 | EU251720 | None | | | | I13V, M36I, R41K, I64V | D |
| | TBK020 | TBK020 | EU251727 | None | | | | M36I, R41K, L63T, I64V | D |
| | TBK022 | TBK022 | EU251728 | None | | | | L10I, I13V, M36I, R41K, L63R, I64V, C67G, K70E, I72V | D |
| | TBK061 | TBK061 | EU251752 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | TBK072 | TBK072 | EU251759 | None | | | | I13V, M36I, R41K, I64V, I72V | D |
| | TBK074 | TBK074 | EU251761 | None | | | | T12A, I13V, K14R, E35D, M36I, R41K, R57K, D60E, I62V, L63P, I64V, H69Y, I72V | D |
| | TBK078 | TBK078 | EU251765 | None | | | | I13V, M36I, R41K, I64V, H69K | D |
| | TBK085 | TBK085 | EU251768 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | TBK087 | TBK087 | EU251770 | None | | | | I13V, M36I, R41K, Q61D, I62V, I64V, E65D, V75I | D |
| | TBK091 | TBK091 | EU251774 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | TMS004 | TMS004 | EU251785 | None | | | | M36I, N37D, R41K, R57K, D60DE, I64V, I93L | D |
| | TMS005 | TMS005 | EU251786 | None | | | | M36I, R41K, I64V, I93L | D |
| | TMS008 | TMS008 | EU251789 | None | | | | E35D, M36I, R41K, I64V, H69Y, I72T | D |
| | TMS015 | TMS015 | EU251794 | None | | | | I13V, I15V, E35D, M36I, R41K, I64V | D |
| | TMS112 | TMS112 | EU251812 | None | | | | I13V, I15V, E35D, M36I, R41K, I64V | D |
| | TMS132 | TMS132 | EU251830 | None | | | | I13V, K20R, M36I, R41K, R57RK, D60DE, I62V, L63LHQ, I64V | D |
| | TMS207 | TMS207 | EU251844 | None | | | | M36I, R41K, I64V, I72IV | D |
| | TMS209 | TMS209 | EU251846 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69C | D |
| | TMS213 | TMS213 | EU251848 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, D60E, I62V, I64V | D |
| | TMS215 | TMS215 | EU251850 | None | | | L33IV | I13V, M36I, P39S, R41K, D60E, I64V | D |
| | TMS308 | TMS308 | EU251859 | None | | | | I13V, G16E, M36I, R41K, D60E, I62V, L63Q, I64V | D |
| | TMS309 | TMS309 | EU251860 | None | | | | I13V, M36I, R41K, I64V | D |
| | TMS311 | TMS311 | EU251861 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, I72V | D |
| | TMS318 | TMS318 | EU251864 | None | | | | I13V, M36I, R41K, I64V, H69K | D |
| | TMS322 | TMS322 | EU251868 | None | | | | I13V, M36I, R41K, D60E, I64V, H69K | D |
| | TMS332 | TMS332 | EU251872 | None | | | | I13V, M36I, R41K, D60E, I64V, H69K, V77I | D |
| | TMS338 | TMS338 | EU251875 | None | | | | M36I, L63E, I64V | D |
| Riddler (2008) | RG56600 | RG56600w67 | | None | | | | M36I, R41K, L63P, K70R | D |
| Somi (2008) | BG-05-166 | BG-05-166 | JQ616945 | None | | | | I13V, M36I, R41K, D60E, L63Q, I64V, I72V | D |
| | BG-05-580 | BG-05-580 | JQ616948 | None | | | | K20R, M36I, R41K, L63K, I64V, E65D, K70E, I72V, N98NHIL | D |
| | BG-05-896 | BG-05-896 | JQ616953 | None | | | | M36I, P39T, R41K, I62V, L63P, I64L, A71T | D |
| | BG-05-957 | BG-05-957 | JQ616954 | None | | | | I13V, K14R, K20KQ, E35D, M36I, R41K, K45KR, H69K, L89M | D |
| Aghokeng (2009) | CYV020 | CYV020 | GU191590 | None | | | | T12S, I15V, L19V, E35D, M36I, R41K | D |
| | CYM041 | CYM041 | GU191591 | None | | | | L10LI, T12TP, K14KR, E35D, M36I, R41K, L63P, H69Q | D |
| | CYN1003 | CYN1003 | GU191593 | None | | | | T12S, I15V, G16E, L19I, E35D, M36I, P39S, R41K, Q61D, L63H | D |
| | HG_0285 | HG_0285 | GU191663 | None | | | | V11VA, T12TAP, I15V, L19V, E35D, M36I, N37E, R41K, I62V, I72V | D |
| | HU_0137 | HU_0137 | GU191676 | None | | | | I15V, K20R, M36I, N37ND, R41K, L63A, I64L, I72IT, V75I | D |
| | HU_0172 | HU_0172 | GU191678 | None | | | | I15V, E35D, M36I, N37E, R41K, R57RK, D60E, I64V, C67S | D |
| Bartolo (2009) | CSE116 | 01AOCSE116 | EU068199 | None | | | | L10V, I13V, K14T, I15V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | HAB83 | 01AOHAB83 | EU068217 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, N37S, R41K, R57K, L63T, L89M | D |
| | HAB85 | 01AOHAB85 | EU068218 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, H69S, L89M | D |
| | HDC239 | 01AOHDC239 | EU068231 | None | | | | L10V, I13V, K14R, G16E, E35D, M36I, R41K, L63H, I64V, H69Q, I72V | D |
| | HJM114 | 01AOHJM114 | EU068252 | None | | | | I13V, K20R, M36I, N37D, R41K, I64V | D |
| | HM176 | 01AOHM176 | EU068319 | None | | | | G17E, M36I, R41K, L63P, H69HR | D |
| Brumme (2009) | A2508 | A2508 | GQ371768 | None | | | | I13V, Q18L, M36I, I62V, L63P, A71V, I93L | D |
| | F8527 | F8527 | GQ371881 | None | | | | L10I, I13V, G16E, M36I, R41K, L63T, I93L | D |
| | K9530 | K9530 | GQ371973 | None | | | | I13V, M36I, R41K, I64V | D |
| Cuevas (2009) | X2713_1 | X2713_1 | GU326183 | None | | | | Q18H, M36I, Q61E, L63P, I64V, I72V, I93L | D |
| Cuevas (2009) | P1293 | P1293.1 | EU822625 | None | | | | L10I, I13V, M36I, R41K, K43R, L63PS, I64V | D |
| de Sa-Filho (2009) | 55690 | 55690Cub | GQ294614 | None | | | | K14R, I15V, Q18QH, E35D, M36I, N37E, R41K, R57K, I64IV, H69Y, I72V | D |
| Eshleman (2009) | D08444W3 | 07-156544 | FJ389051 | None | | | | L10V, I13V, K20R, M36I, R41K, L63T, I64V, E65D, I72V | D |
| | G49070R9 | 07-156545 | FJ389052 | None | | | | I13V, K20R, M36I, R41K, L63Q, I64V, E65D | D |
| | E40578W1 | 07-156559 | FJ389054 | None | | | | I13V, K20R, M36I, R41K, I62V, L63Q, I64V, E65D | D |
| | B03497W2 | 07-156906 | FJ389060 | None | | | | I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V | D |
| | B06329W1 | 07-156909 | FJ389061 | None | | | | I13V, M36I, R41K, I64V | D |
| | G36577W3 | 07-156952 | FJ389075 | None | | | | K14KNRS, I15V, M36I, R41K, I64V, K70KR | D |
| | H02375W2 | 07-156958 | FJ389077 | None | | | | I13V, I15V, M36I, N37D, R41K, V75I | D |
| | K10192W1 | 07-156972 | FJ389082 | None | | | | M36I, R41K, I62V, L63S, I64V, E65D | D |
| | C10111W3 | 07-156980 | FJ389086 | None | | | | I13V, K20M, M36I, R41K, I64V, H69Y | D |
| | F20947R9 | 07-156983 | FJ389089 | None | | | | I13V, M36I, R41K, I64V | D |
| | F35636W3 | 07-156984 | FJ389090 | None | | | | I13V, M36I, R41K, I64V | D |
| | C03919W2 | 07-156988 | FJ389093 | None | | | | I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V | D |
| | F28785B6 | 07-156992 | FJ389095 | None | | | | T12TK, I13IV, K14KR, M36I, R41K, K45KR, D60E, I64V | D |
| | J31493W1 | 07-156994 | FJ389096 | None | | | | I13V, M36I, R41K, I62IV, I64V, C67CHRY, H69K | D |
| | A02378W2 | 07-156995 | FJ389097 | None | | | | I13V, I15V, M36I, N37D, R41K, V75I | D |
| | K13668W3 | 07-156999 | FJ389101 | None | | | | I13V, G16E, K20R, M36I, R41K, D60E, Q61E, I62V, I64V, I72K | D |
| | K13985B6 | 07-157000 | FJ389102 | None | | | | I13V, I15V, M36I, N37S, P39S, R41K, L63Q, I64V | D |
| | H13658W2 | 08-101499 | FJ389105 | None | | | | I13IV, K20R, E35K, M36I, N37D, R41K, I64V | D |
| | H20818W2 | 08-101503 | FJ389107 | None | | | | I13V, K14R, K20R, M36I, N37D, R41K, A71T | D |
| | A40697W2 | 08-101505 | FJ389109 | None | | | | I13V, M36I, R41K, L63P, I64IV | D |
| | J45014W3 | 08-101543 | FJ389117 | None | | | L33I | I13V, G16E, M36I, R41K, I64V, I72IV | D |
| | K13286W3 | 08-101560 | FJ389120 | None | | | | I13V, M36I, R41K, L63P | D |
| | K27580M1 | 08-101567 | FJ389122 | None | | | L33F | I13V, K14R, M36I, N37S, R41K, I62V, I64V, C67Q, H69Y, I72V, V77I | D |
| | F03996W1 | 08-101570 | FJ389123 | None | | | | I13V, I15V, M36I, R41K, L63V, I64V, E65D | D |
| | G10555B6 | 08-101571 | FJ389124 | None | | | | I13V, M36I, R41K, I64V | D |
| | G32218W2 | 08-101573 | FJ389126 | None | | | | I13V, Q18I, L33V, M36I, I64V, C67CY, I72V | D |
| | H13771W2 | 08-101575 | FJ389127 | None | | | | I13V, M36I, R41K, I64V | D |
| | J00596W2 | 08-101579 | FJ389130 | None | | | | M36I, R41K, L63S, I64V, K70R | D |
| | K31818R9 | 08-101584 | FJ389131 | None | | | | T12A, I13V, K20R, M36I, R41K, I62V, L63S, I64V | D |
| | K23352W2 | 08-101592 | FJ389134 | None | | | | I13V, M36I, R41K, Q61N, I64V, H69Y, I72V | D |
| | K09738W2 | 08-102645 | FJ389136 | None | | | | I13V, M36I, R41K, I64V | D |
| | K12281R9 | 08-102646 | FJ389137 | None | | | | I13V, M36I, R41K, D60E, L63E, I64V | D |
| | A06734R9 | 08-102647 | FJ389138 | None | | | | I13V, K20I, M36I, R41K, L63P, I64V, E65D | D |
| | C03294W3 | 08-102651 | FJ389142 | None | | | | I13V, I15V, M36I, R41K, I64V, K70KR | D |
| | C08508W1 | 08-102848 | FJ389143 | None | | | | T12P, I13V, L19I, M36I, R41K, I64V, H69Y | D |
| | C25290W3 | 08-102854 | FJ389144 | None | | | | L10V, I13V, G16E, M36I, R41K, L63Q, I64V, V75VI | D |
| | C38298W3 | 08-102859 | FJ389145 | None | | | | M36I, R41K, I64V, H69Y | D |
| | E35635W3 | 08-102880 | FJ389149 | None | | | | I13V, M36I, R41K, I64V | D |
| | F39204W2 | 08-102893 | FJ389150 | None | | | | I13V, K20KR, M36I, R41K, I64V, K70R | D |
| Fujisaki (2009) | 60 | 60 | AB442247 | None | | | | I13V, G17GE, M36I, N37D, R41K, D60E, I62IV, L63P, I64V, K70R | D |
| Hawkins (2009) | P650 | ZZP650 | FJ931154 | None | | | L33F | L10V, I13V, K20V, M36I, N37S, P39S, R41K, L63T, I64V, E65D, I72V | D |
| | Q234 | ZZQ234 | FJ931225 | None | | | | I15V, K20R, E35D, M36I, R41K, R57RK | D |
| | R61 | ZZR61 | FJ931300 | None | | | | I13V, K20R, M36I, R41K, I62V, L63A, I64V, E65D | D |
| | Q967 | ZZQ967 | FJ931372 | None | | | | I13V, K14KR, K20I, M36I, R41K, L63A, I64L | D |
| Kousiappa (2009) | CY007 | CY007 | EU673377 | None | | | | T12S, I15V, E35D, M36I, R41K, K43KQ, L89M | D |
| Koyalta (2009) | 30 | TCHAD-30 | FJ688183 | None | | | | M36I, N37D, R41K, D60E, I62V, L63P, I64V, C67S | D |
| | 71 | TCHAD-71 | FJ688202 | None | | | | K20R, E35D, M36I, R41K, L63A | D |
| | 74 | TCHAD-74 | FJ688204 | None | | | Q58E | T4S, K14R, I15V, K20R, E35D, M36I, R41K, L89M | D |
| | 85 | TCHAD-85 | FJ688209 | None | | | Q58E | T4S, K14R, I15V, K20R, E35D, M36I, R41K, L89M | D |
| Mintsa-Ndong (2009) | MKK90 | MKK90 | AM903437 | None | | | | T12K, K14R, I15V, E35D, M36I, R41K | D |
| Smith (2009) | CR223 | US2007CR223 | | None | | | | I15V, L19I, M36I, R41K, I62V, L63A, I72T, I85IV, L89F | D |
| Steegen (2009) | BV232 | BV232-1 | EU872131 | None | | | L33I | I13V, L19IV, K20KM, M36I, R41K, K43KR, R57K, Q61E, L63P, I64V, E65ED, I72IV, I93L | D |
| Vercauteren (2009) | pt2185 | 108155411 | GQ398839 | None | | | | Q7R, L10LP, T12A, I13V, I15V, K20I, E35D, M36I, R41K, L63P, I64L, H69HD | D |
| | pt2129 | 04fKkOcQne | GQ398895 | None | | | | I13V, M36I, R41K, I64V, H69HY | D |
| | pt1732 | 2M624iEVRo | GQ399292 | None | | | L33F | I13V, M36I, R41K, I62V, I64V, C67CS | D |
| | pt1708 | 3124576130 | GQ399316 | None | | | | T12L, I13V, G16E, E35D, M36I, R41K, K45R, D60E, I62V, L63AS, I64V, I72IV | D |
| | pt1692 | 31B1W2XiW5 | GQ399332 | None | | | | I13V, K20R, L33V, M36I, R41K, I62V, L63S, I64V | D |
| | pt1624 | 3615684334 | GQ399400 | None | | | | I13V, I15IV, K20I, E35G, M36I, R41K, L63LP, V77I | D |
| | pt1513 | 4198741005 | GQ399511 | None | | | | E35D, M36I, R41K, L63P, K70R, I72V | D |
| | pt1335 | 5226438876 | GQ399689 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, I64L | D |
| | pt1268 | 5588432246 | GQ399756 | None | | | | I13V, L19LI, M36I, R41K, L63LP | D |
| | pt761 | 8593258083 | GQ400263 | None | | | | T12TAEK, I13V, K14KR, I15V, K20I, E35ED, M36I, R41K, L63P, I64L | D |
| | pt595 | 9420845038 | GQ400429 | None | | | | I13V, K14R, K20I, E35D, M36I, N37D, L63P | D |
| | pt513 | 9825473025 | GQ400511 | None | | | | I13V, I15IV, G17GE, E35D, M36I, N37D, R41K, D60E, I62IV, L63LP, I64IV, K70KR, I72IM | D |
| | pt22 | ysny8k8zMZ | GQ401002 | None | | | | I13V, M36I, N37S, R41K, I64V | D |
| | pt4 | ZumibsvqAD | GQ401020 | None | | | | L10I, M36I, R41K, I62V, L63P, I64L, H69Q, I72V | D |
| Yebra (2009) | SP16-320310 | SP16-320310 | EU255389 | None | | | | M36I, R41K, D60E, H69K | D |
| | SP26-346921 | SP26-346921 | EU342817 | None | | | | I15V, E35D, M36I, R41K, R57K | D |
| | SP75-392005 | SP75-392005 | EU362927 | None | | | | I13V, I15V, E35D, M36I, R41K | D |
| Arruda (2010) | 1017 | 16CE081017 | JQ230590 | None | | | | I13V, K20R, L33V, M36I, P39PT, R41K, R57RK, I62V, L63P, I64V, E65D | D |
| | 1104 | 16CE091104R | JQ230684 | None | | | | T12I, I15V, G16E, E35D, M36I, R41K, R57K, D60E, Q61N, I62V, I72T | D |
| Bonura (2010) | 1054_124 | 1054_124 | GU969484 | None | | | | I13V, M36I, R41K, L63PS | D |
| | 1068_133 | 1068_133 | GU969486 | None | | | | I13V, M36I, R41K, L63P | D |
| | 984_73 | 984_73 | GU969495 | None | | | | I13V, M36I, R41K, L63P | D |
| | 1136_102 | 1136_102 | GU969514 | None | | | | I13V, M36I, R41K, L63P, I64IL | D |
| | 1170_34 | 1170_34 | GU969535 | None | | | | I13V, E35D, M36I, R41K, L63P | D |
| Brennan (2010) | Pat033 | ARC-A207 | JN697346 | None | | | | I13V, M36I, R41K, I62V, I64V, K70R | D |
| Castelbranco (2010) | 090014A | 090014A | HM357731 | None | | | | E35D, M36I, R41K, D60E, I62V, L63P, K70R, I93L | D |
| | 090031A | 090031A | HM357747 | None | | | | I13V, G17D, M36I, R41K, I62V, I64IV | D |
| | 090037A | 090037A | HM357748 | None | | | | L10V, I13V, M36I, R41K, I64V, K70R | D |
| Diop-Ndiaye (2010) | 160HALD | 160HALD | FN599689 | None | | | | T12S, I15V, E35D, M36I, R41K, Q61HN, I62V, L63P, H69Y | D |
| | 1898HALD | 1898HALD | FN599801 | None | | | | T12K, I13V, K14R, K20I, M36I, R41K, Q61D, L63P, I64V | D |
| Djoko (2010) | 655 | CD2193 | FR666655 | None | | | | E35D, M36I, N37ND, R41K, Q61QH, I62IV, I64V, I72T | D |
| | 667 | CD3864 | FR666667 | None | | | | I15V, E35D, M36I, R41K, K43R, R57K, Q61N, I62V, L63HQ, E65ED, H69Q | D |
| | 675 | CD4647 | FR666675 | None | | | | I13IV, M36I, R41K, Q61H, I62V, L63P, I64IV | D |
| | 681 | CD4715 | FR666681 | None | | | | L19I, M36I, N37D, R41K, R57K, L63S, I64V, E65N, G78E | D |
| Ferreira (2010) | P20 | DIP20 | GQ862305 | None | | | | I15V, M36I, R41K, L63S | D |
| Mosha (2010) | S2pol | S2pol | JQ071451 | None | | | | I13V, I15V, M36I, R41K, L63R, I64V, K70E | D |
| | S62Pol | S62Pol | JQ071482 | None | | | | I13V, G16GE, K20KM, E35ED, M36I, P39PS, R41K, R57RK, I64V, K70R | D |
| | S76Pol | S76Pol | JQ071493 | None | | | | I13V, M36I, P39PS, R41K, I62V, L63P, I64IL, H69Y, I72V | D |
| Ndembi (2010) | 13075D_P1 | 13075 | GQ409548 | None | | | | I13V, M36I, R41K, I64V, K70R, I72V | D |
| | 13327D_P1 | 13327 | GQ409555 | None | | | | I13V, G16E, M36I, R41K, I64V | D |
| | 13734D_P1 | 13734 | GQ409557 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, D60E, I62V, L63P, I64V, I72V | D |
| | 13765D_P1 | 13765 | GQ409558 | None | | | | L10V, M36I, L63V, I64V, H69K | D |
| | 14039D_P1 | 14039 | GQ409563 | None | | | | I13V, L33V, M36I, R41K, I64V, K70R | D |
| | 14901D_P1 | 14901 | GQ409571 | None | | | | I13V, K14KR, K20R, M36I, R41K, I62V, I64V, H69Y, I72T | D |
| | 15730D_P1 | 15730 | GQ409578 | None | | | | L19Q, K20R, M36I, N37D, R41K, L63T, I64V, E65D | D |
| | 17235D_P1 | 17235 | GQ409592 | None | | | | I13V, K20R, M36I, R41K, D60E, I62V, I64V | D |
| | DT0405_05_P1 | 405 | GQ409595 | None | | | | I13V, I15V, M36I, P39S, R41K, I62V, I64V, H69Y, I72V | D |
| | DT0917_05_P1 | 917 | GQ409596 | None | | | | I13V, M36I, R41K, L63Q, I64V, E65D | D |
| | DT3479_05_P1 | 3479 | GQ409616 | None | | | | I13V, K20R, M36I, N37D, R41K, R57K, Q61E, I64V, E65D | D |
| | DT3527_05_P1 | 3527 | GQ409621 | None | | | | M36I, R41K, L63P | D |
| | DT3771_05_P1 | 3771 | GQ409624 | None | | | | I15V, M36I, R41K, I62V, L63P, I93L | D |
| | DT3951_05_P1 | 3951 | GQ409626 | None | | | | I13V, M36I, R41K, L63P, I72V | D |
| | 16535D_P1 | 16535 | GQ409634 | None | | | Q58E | I13V, L19I, M36I, R41K, L63T, I64V, E65D | D |
| Ragonnet-Cronin (2010) | PHAC_447 | PHAC_447 | HM468945 | None | | | | T12S, I15V, L19Q, M36I, R41K, L63P, E65D, K70R | D |
| Soares (2010) | CM04_050 | CM04_050 | GU366145 | None | | | | L19I, E35D, M36I, R41K, R57K, I62V, L63S, A71T, I72V, V77I | D |
| | CM02_010 | CM02_010 | GU366151 | None | | | | E35D, M36I, R41K, L63P, I64V, K70T | D |
| Towler (2010) | 384840-B | 384840-B | HM037825 | None | | | | I13V, I15IV, L19I, M36I, R41K, I64V | D |
| | 439553-X | 439553-X | HM037830 | None | | | | L10V, I13V, G16E, K20R, M36I, P39S, R41K, I62V, L63P, I72V | D |
| | 5or3 | 452976-H | HM037832 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | | 533249-H | HM037894 | None | | | | I13V, K14KN, E21ED, E35ED, M36I, R41K, I64V, K70R | D |
| | 320707-D | 320707-D | HM037841 | None | | | | I13V, K20KR, M36I, R41K, I62V, L63S, I64V | D |
| | 330712-H | 330712-H | HM037848 | None | | | | E35D, M36I, R41K, I64V, E65ED | D |
| | 335694-K | 335694-K | HM037851 | None | | | | T12TKN, I13V, L19I, M36I, R41K, L63C, I64V | D |
| | 348266-T | 348266-T | HM037858 | None | | | | I13V, M36I, R41K, L63P, I64V | D |
| | 408513-V | 408513-V | HM037871 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, I64V | D |
| | 436029-H | 436029-H | HM037878 | None | | | | I13V, K20R, M36I, R41K, I64V, H69Y, I72V | D |
| | 449280-S | 449280-S | HM037880 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | 450487-M | 450487-M | HM037881 | None | | | | I13V, K20M, M36I, P39S, R41K, I62V, L63P, I64V | D |
| von Wyl (2010) | 4796734 | 4796734 | GQ848131 | None | | | | Q7E, I13V, K14R, I15V, L19I, M36I, R41K, I62V, L63P, I72V, V77I | D |
| Yang (2010) | 2010693436 | 2010693436 | JQ616878 | None | | | | L10I, I13V, I15V, K20I, E35D, M36I, R41K, Q61H, K70R, A71T, I72E | D |
| | 2010693440 | 2010693440 | JQ616880 | None | | | | M36I, R41K, I62V, L63P, I64L, H69Y | D |
| | 2010693444 | 2010693444 | JQ616884 | None | | | | I13V, G17D, K20R, M36I, R41K, I62IV, L63X, I64IM | D |
| | 2010693448 | 2010693448 | JQ616887 | None | | | | Q18E, E35D, M36I, R41K, Q61N, L63T, E65D, I72T | D |
| | 2010693453 | 2010693453 | JQ616908 | None | | | | L10I, I13V, I15V, K20I, E35D, M36I, R41K, H69L, K70R, A71T, I72E | D |
| Yebra (2010) | 173830 | 04SP0173830 | FJ481672 | None | | | | I15V, L19Q, M36I, R57K, Q61N, I72E | D |
| Aghokeng (2011) | HJ1815 | HJ1815 | JN639521 | None | | | | L10LI, T12TP, K14KR, E35D, M36I, R41K, L63P, H69Q | D |
| | SK3032-PI | SK3032-PI | JN639528 | None | | | | I15V, E35D, M36I, R41K, I62V, L63I, I64V | D |
| | SK1002-PI | SK1002-PI | HQ864352 | None | | | | K14KR, I15V, E35D, M36I, N37ND, R41K, R57RK, I62V, L63A, E65ED | D |
| | SK3012-PI | SK3012-PI | HQ864353 | None | | | | I15V, L19Q, E35D, M36I, R41K, Q61QE, L63P, I93L | D |
| | SK4064-PI | SK4064-PI | HQ864354 | None | | | | L10V, I15V, E35D, M36I, R41K, I62V, C67D, V82VI | D |
| | SK1025-PI | SK1025-PI | HQ864357 | None | | | | L19I, E35D, M36I, R41K, I62V, L63S, I72IV, V77VI | D |
| | SK3005-PI | SK3005-PI | HQ864378 | None | | | | E35D, M36I, R41K, L63P, H69Q | D |
| Aghokeng (2011) | SK9016-M18 | SK9016-M18 | HQ864355 | None | | | | I13V, Q18QH, L19LM, K20R, M36I, R41K, K45KR, L63A | D |
| Carvalho (2011) | O17-83 | O17-83 | GU214097 | None | | | | L10V, T12Q, I15V, M36I, N37E, R57K, L63P, I72T, I93L | D |
| Charpentier (2011) | 69 | CP 001 805 | | None | | | | W6*, I13V, M36I, R41K, L63P, H69Y, I72V | D |
| de Medeiros (2011) | Pat021 | RS143 | JF487850 | None | | | | I13V, M36I, R41K, I72R | D |
| El Annaz (2011) | 5044 | 5044 | HQ393263 | None | | | | I13IV, E35D, M36I, R41K, I62V, L63A, I64IV | D |
| | 6264 | 6264 | HQ393275 | None | | | | T12P, E35D, M36I, R41K, L63P, I64V, C67W | D |
| | 7603 | 7603 | HQ393285 | None | | | | I13V, K14KR, I15V, K20I, E35N, M36I, R41K, K45R, L63A | D |
| | 9205 | 9205 | HQ393293 | None | | | | I13V, Q18H, E35D, M36I, R41K, K45R, R57RK, L63T, I64V, E65D | D |
| | 9668 | 9668 | HQ393295 | None | | | | I13V, Q18H, E35D, M36I, R41K, K45R, L63T, I64V, E65D | D |
| | 11509 | 11509 | HQ393307 | None | | | | I13V, M36I, N37D, L63T, I64V, E65D, I72IV | D |
| | 14107 | 14107 | HQ393314 | None | | | L33I | I13V, I15IL, E35D, M36I, N37I, R41K, R57K, L63A, I64V, E65D, I72IV | D |
| Ferreira (2011) | BRMT1221 | BRMT1221 | HQ638778 | None | | | | T12N, I15V, L19I, E35D, M36I, R41K, I62IV, L63PS, K70V, I72V | D |
| Florea (2011) | 105_2008 | 105_2008 | JQ083016 | None | | | | L10V, I15V, G16E, K20R, E35D, M36I, P39S, R41K, R57K, L63T, E65D, I72T, T74S, L89M | D |
| | 1091_2007 | 1091_2007 | JQ083019 | None | | | | T12P, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63A, L89M | D |
| | 1121_2007 | 1121_2007 | JQ083024 | None | | | | L10V, T12S, I13V, I15V, G16E, L19I, K20R, E35D, M36I, R57K, L63T, E65D, I72T, L89M | D |
| | 1572_2007 | 1572_2007 | JQ083028 | None | | | | I13V, I15V, L19LI, E35D, M36I, R41K, R57K, L63T, E65D, I72T, V82VI, L89M | D |
| | 1636_2007 | 1636_2007 | JQ083030 | None | | | | L10V, T12I, I13V, I15V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, I62V, L63T, E65D, I72T, T74TA, L89M | D |
| | 1649_2007 | 1649_2007 | JQ083031 | None | | | | L10V, G16E, K20R, E35D, M36I, R41K, R57K, I62V, L63T, L89M | D |
| | 1679_2007 | 1679_2007 | JQ083034 | None | | | | K20KR, E35D, M36I, R41K, I62IV, L63T, I64ILM, E65D, I72IT, V82VI, L89M | D |
| | 1933_2007 | 1933_2007 | JQ083039 | None | | | | L10V, I15V, L19I, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M, I93L | D |
| | 2142_2007 | 2142_2007 | JQ083042 | None | | | | L10I, T12AE, G16E, E35D, M36I, R41K, R57K, L63T, E65D, I72T, V77I, L89M, I93L | D |
| | 2360_2008 | 2360_2008 | JQ083043 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | 3004_2007 | 3004_2007 | JQ083048 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| | 3016_2007 | 3016_2007 | JQ083050 | None | | | | L10I, G16E, L19LI, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89LM | D |
| | 3160_2007 | 3160_2007 | JQ083051 | None | | | | T12TKPQ, I15IV, G16GE, L19LI, E35D, M36I, R41K, K45KR, R57K, I62V, L63T, E65D, I72IT, V82I, L89M | D |
| | 4171_2007 | 4171_2007 | JQ083056 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, I62V, L63T, E65D, I72T | D |
| | 4175_2007 | 4175_2007 | JQ083057 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63T, E65D, I72T | D |
| | 4638_2008 | 4638_2008 | JQ083062 | None | | | | L10V, I15V, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, T74S, L89M | D |
| | 4646_2007 | 4646_2007 | JQ083068 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, P39T, R41K, L63T, E65D, I72T, L89M | D |
| | 4887_2007 | 4887_2007 | JQ083075 | None | | | | L10V, I13V, I15IV, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| Fokam (2011) | CIRCB-8995 | CIRCB-8995 | JQ796156 | None | | | | I15IV, K20R, M36I, R41K, L63AV, K70KR, I72IM | D |
| Hamers (2011) | CP076301551 | CP076301551 | HQ993594 | None | | | | I15V, M36I, R41K, K70KR | D |
| | CP076301552 | CP076301552 | HQ993595 | None | | | | I13V, M36I, R41K, L63LP, I64V, I72V | D |
| | CP076301557 | CP076301557 | HQ993599 | None | | | | I13V, L19V, L33V, M36I, N37T, R41K, L63P, I72V | D |
| | CP076301559 | CP076301559 | HQ993601 | None | | | | I13V, M36I, R41K, D60E, I64V | D |
| | CP076301620 | CP076301620 | HQ993656 | None | | | | I13V, G16E, E35D, M36I, R41K, Q61E, I62V, I64V, H69HY, I72R, V77VI | D |
| | CP076301659 | CP076301659 | HQ993663 | None | | | | E35D, M36I, N37D, L63P, I72V | D |
| | CP076301686 | CP076301686 | HQ993682 | None | | | | L10V, I13V, G16E, M36I, R41K, D60DE, L63H, I64V, H69C, I72V | D |
| | CP076301689 | CP076301689 | HQ993685 | None | | | | L19X, E35D, M36I, N37S, R41K, I62V, L63S, I64IV | D |
| | CP076301721 | CP076301721 | HQ993714 | None | | | | L5X, I13V, M36I, N37Q, R41K, I62V, L63N, I64V, H69Y, I72IV | D |
| | CP076301750 | CP076301750 | HQ993739 | None | | | | Q18I, L19V, E35D, M36I, R41K, L63T, I64L, H69Y, I72T, L89M | D |
| | CP076301764 | CP076301764 | HQ993751 | None | | | | I13V, M36I, R41K, D60E, I64V | D |
| | CP076301767 | CP076301767 | HQ993753 | None | | | | I13V, K20R, E35G, M36I, N37D, R41K, I64V, E65D | D |
| | CP076301769 | CP076301769 | HQ993755 | None | | | | I13V, K20M, E35N, M36I, R41K, R57RKQ, Q61DE, I62IV, L63E, I64V, E65ED, C67CW, K70KR | D |
| | CP076301771 | CP076301771 | HQ993757 | None | | | | I13V, K20R, M36I, R41K, I62IV, L63LP, I64V, H69HY, I72V | D |
| | CP076301630 | CP076301630 | HQ993779 | None | | | | I13V, L19I, M36I, R41K, I64V, H69K | D |
| | CP076301652 | CP076301652 | HQ993795 | None | | | | K14R, M36I, N37D, R41K, I64V | D |
| | CP076301661 | CP076301661 | HQ993799 | None | | | | I13V, I15IV, Q18H, M36I, R41K, L63P | D |
| | CP076302198 | CP076302198 | HQ993807 | None | | | | T4S, L10I, I15V, M36I, R41K, I62V, L63S, I64V, E65D, C67NS | D |
| | CP076302206 | CP076302206 | HQ993810 | None | | | | I13V, G16E, K20R, M36I, R41K, I72V | D |
| | CP076304156 | CP076304156 | HQ993881 | None | | | | I13V, E35D, M36I, R41K, I62IV, I64V | D |
| | CP076304183 | CP076304183 | HQ993895 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | CP076304196 | CP076304196 | HQ993900 | None | | | | I13V, M36I, R41K, I64IV | D |
| | CP076304217 | CP076304217 | HQ993913 | None | | | | I13V, K20R, M36I, R41K, L63A, I64V, I72IV | D |
| | CP076304218 | CP076304218 | HQ993914 | None | | | | I13V, M36I, N37D, R41K, R57K, D60E, L63P, I64V | D |
| | CP076304229 | CP076304229 | HQ993924 | None | | | | M36I, R41K, I64V | D |
| | CP076304259 | CP076304259 | HQ993947 | None | | | | Q18H, K20R, M36I, R41K, I62V, L63S, I64V, E65D, I72V, I85V | D |
| | CP076304260 | CP076304260 | HQ993948 | None | | | | I13V, G16E, L33LV, M36I, P39S, R41K, K45R, D60E, I62V, L63P, I64V, I72IV | D |
| | CP076304396 | CP076304396 | HQ993971 | None | | | | E35D, M36I, N37ND, R41K, L63A | D |
| | CP076303519 | CP076303519 | HQ994001 | None | | | | I15V, E35D, M36I, N37D, R41K, R57K, Q61H, K70R | D |
| | CP076303615 | CP076303615 | HQ994076 | None | | | | T12S, I15V, L19T, E35D, M36I, R41K, L63LP, I64IV | D |
| | CP076303149 | CP076303149 | HQ994171 | None | | | | I13V, L19LV, M36I, N37ND, R41K, L63Q, I64V | D |
| | CP076303180 | CP076303180 | HQ994196 | None | | | | K14G, I15V, K20R, M36I, R41K, I62V, L63V, E65D, H69K, I72V, T74S, L89M | D |
| | CP076301449 | CP076301449 | HQ994419 | None | | | | I13IV, G16GE, K20KR, E35D, M36I, R41K, K70R, L89LM | D |
| | CP076300738 | CP076300738 | HQ994929 | None | | | | L10V, I13V, G16E, E35ED, M36I, N37D, R41K | D |
| | CP076300807 | CP076300807 | HQ994944 | None | | | | L10I, I13V, M36I, R41K, D60E, I62V, L63P, C67D | D |
| | CP076300815 | CP076300815 | HQ994947 | None | | | | I13V, M36I, R41K, L63V, I64V | D |
| | CP076300841 | CP076300841 | HQ994957 | None | | | L33I | I13V, K20M, E35D, M36I, R41K, L63Q, I64V, I72V | D |
| | CP076300854 | CP076300854 | HQ994959 | None | | | | I13V, I15V, M36I, R41K, I64V, I72V | D |
| | CP076300866 | CP076300866 | HQ994961 | None | | | | M36I, R41K, L63Q, I64V, E65D | D |
| | CP076300879 | CP076300879 | HQ994963 | None | | | | I13V, M36I, N37H, R41K, L63Q, I64V, E65D, I72V | D |
| | CP076300894 | CP076300894 | HQ994969 | None | | | Q58E | I13V, L33V, M36I, P39Q, R41K, I62IV, L63Q, I64V, E65D, I72V | D |
| | CP076301791 | CP076301791 | HQ994973 | None | | | | I13V, I15L, L33V, M36I, R41K, I64V | D |
| | CP076301798 | CP076301798 | HQ994975 | None | | | L33F | I13V, K20I, M36I, R41K, I64V, E65D | D |
| | CP076301803 | CP076301803 | HQ994977 | None | | | | I13V, I15L, L33V, M36I, R41K, I64V | D |
| | CP076301806 | CP076301806 | HQ994978 | None | | | | I13V, M36I, R41K, L63P | D |
| | CP076301817 | CP076301817 | HQ994979 | None | | | | I13V, I15V, M36I, R41K, L63P, I64V, I72E | D |
| | CP076301830 | CP076301830 | HQ994984 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | CP076301846 | CP076301846 | HQ994991 | None | | | | I13V, M36I, R41K, K45R, L63S, I64V, E65D, I72V | D |
| | CP076301863 | CP076301863 | HQ994999 | None | | | | I13V, M36I, R41K, I64V | D |
| | CP076301864 | CP076301864 | HQ995000 | None | | | | L10V, I13V, M36I, R41K, L63P, I64V, E65D | D |
| | CP076301867 | CP076301867 | HQ995002 | None | | | Q58E | I13V, K20R, M36I, N37D, R41K, R57K, L63V, I64V | D |
| | CP076301872 | CP076301872 | HQ995004 | None | | | | I13V, M36I, R41K, L63P, I64V, H69Y, I72V | D |
| | CP076301883 | CP076301883 | HQ995011 | None | | | L33I | T12P, I13V, K20M, M36I, R41K, L63S, I64V | D |
| | CP076302052 | CP076302052 | HQ995021 | None | | | | L10I, I13V, G16E, M36I, R41K, L63T, I64V, C67S, I72IV | D |
| | CP076302059 | CP076302059 | HQ995023 | None | | | | I15V, M36I, R41K | D |
| | CP076302065 | CP076302065 | HQ995028 | None | | | | I13V, K20R, M36I, R41K, L63PQ, I64V, E65D | D |
| | CP076302071 | CP076302071 | HQ995031 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | CP076302082 | CP076302082 | HQ995036 | None | | | | L10I, T12N, M36I, R41K, L63P | D |
| | CP076302938 | CP076302938 | HQ995040 | None | | | | M36I, R41K, L63P, I64V | D |
| | CP076302939 | CP076302939 | HQ995041 | None | | | | K14R, L19Q, K20R, M36I, R41K, I64V | D |
| | CP076302962 | CP076302962 | HQ995049 | None | | | | L19I, E35D, M36I, R41K, L63P | D |
| | CP076302982 | CP076302982 | HQ995059 | None | | | | Q7H, L10I, I13V, I15V, Q18H, K20M, M36I, N37D, R41K, L63T, I64V, E65D, K70R | D |
| | CP076302984 | CP076302984 | HQ995060 | None | | | | I13V, M36I, R41K, I64V, H69Y, I72V | D |
| | CP076302990 | CP076302990 | HQ995062 | None | | | | I15V, E35D, M36I, R41K, D60E, I62V, I64V | D |
| | CP076302993 | CP076302993 | HQ995065 | None | | | | I13V, M36I, R41K, D60E, I62V, L63S, I64V | D |
| | CP076303006 | CP076303006 | HQ995071 | None | | | | I13V, M36I, R41K, K43R, R57K, L63P, I64V | D |
| | CP076303007 | CP076303007 | HQ995072 | None | | | | L10V, I13V, G16E, K20R, M36I, P39S, R41K, I64V, K70KR | D |
| | CP076303008 | CP076303008 | HQ995073 | None | | | | I13V, K14R, M36I, R41K, L63P, I64V, I72T | D |
| | CP076303012 | CP076303012 | HQ995077 | None | | | | L10I, I13V, L19M, M36I, R41K, L63V, I64V, E65D | D |
| | CP076303021 | CP076303021 | HQ995085 | None | | | | I13V, M36I, R41K, I64V, K70KR | D |
| | CP076303027 | CP076303027 | HQ995090 | None | | | | L10V, I13V, M36I, R41K, I64V | D |
| | CP076303028 | CP076303028 | HQ995091 | None | | | | L10I, I13V, I15V, M36I, R41K, I64V, K70R | D |
| | CP076303030 | CP076303030 | HQ995092 | None | | | | I13V, L19V, M36I, R41K, I62V, L63S, I64V, H69Y, I72V | D |
| | CP076303031 | CP076303031 | HQ995093 | None | | | | L10I, M36I, R41K, L63H, I64V | D |
| | CP076303037 | CP076303037 | HQ995098 | None | | | | L10LI, T12A, I13V, M36I, R41RK, L63T, I64V, I72IV | D |
| | CP076300742 | CP076300742 | HQ995100 | None | | | | I13V, M36I, R41K, D60E, I62V, L63P, I64V | D |
| | CP076300848 | CP076300848 | HQ995115 | None | | | | T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69Y | D |
| | CP076300850 | CP076300850 | HQ995117 | None | | | | M36I, R41K, I64V | D |
| | CP076300851 | CP076300851 | HQ995118 | None | | | | T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69Y | D |
| | CP076300870 | CP076300870 | HQ995128 | None | | | | I13V, E35D, M36I, R41K, L89M | D |
| | CP076300873 | CP076300873 | HQ995130 | None | | | | I15V, L19I, M36I, R41K, I64V, E65D | D |
| | CP076300876 | CP076300876 | HQ995132 | None | | | | I13V, I15V, M36I, R41K, I64V, I72V | D |
| | CP076300880 | CP076300880 | HQ995134 | None | | | | I13V, K14KR, G16A, M36I, R41K, V77VI | D |
| | CP076300884 | CP076300884 | HQ995136 | None | | | | I13V, K14KR, K20R, M36I, R41K, H69Y, I72V | D |
| | CP076301797 | CP076301797 | HQ995149 | None | | | | I13V, M36I, R41K, I64V | D |
| | CP076301840 | CP076301840 | HQ995167 | None | | | | L10I, I13V, L19M, M36I, R41K, L63V, I64V, E65D | D |
| | CP076301845 | CP076301845 | HQ995169 | None | | | | I13V, K14R, M36I, R41K, I64V | D |
| | CP076301848 | CP076301848 | HQ995170 | None | | | | I13V, G16E, K20R, M36I, P39S, R41K, I64V, K70KR | D |
| | CP076301850 | CP076301850 | HQ995171 | None | | | | I13V, M36I, R41K, I64V, K70KR | D |
| | CP076301871 | CP076301871 | HQ995175 | None | | | | L10LI, I13V, I15V, M36I, R41K, L63P, I64V, K70R | D |
| | CP076301995 | CP076301995 | HQ995180 | None | | | | L10V, L19I, M36I, R41K, D60E, I62V, L63V, I64V | D |
| | CP076302023 | CP076302023 | HQ995192 | None | | | | M36I, N37D, R41K, Q61H, I62V, L63P, C67Y, H69Y, I72T | D |
| | CP076302024 | CP076302024 | HQ995193 | None | | | | L10V, I13V, K20R, E35D, M36I, L63P, H69Q | D |
| | CP076302027 | CP076302027 | HQ995194 | None | | | | I13V, K20R, M36I, N37NT, R41K, R57K, L63P, I64V, H69Y, I72V | D |
| | CP076302031 | CP076302031 | HQ995196 | None | | | | I13V, G16E, K20R, M36I, R41K, R57K, I64V, H69Y | D |
| | CP076302057 | CP076302057 | HQ995205 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | CP076302067 | CP076302067 | HQ995207 | None | | | | I13V, I15V, M36I, R41K, I64V, I72V | D |
| | CP076302972 | CP076302972 | HQ995218 | None | | | | I13V, M36I, N37D, L63T, I64V, E65D, K70R, I72V | D |
| | CP076302987 | CP076302987 | HQ995221 | None | | | | M36I, R41K, L63P, I64V | D |
| | CP076303042 | CP076303042 | HQ995226 | None | | | | I13V, M36I, R41K, I64V | D |
| | CP076303049 | CP076303049 | HQ995232 | None | | | | L10V, I13V, M36I, L63P, I64V, I72V | D |
| | CP076303055 | CP076303055 | HQ995236 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V, H69Y | D |
| | CP076303068 | CP076303068 | HQ995248 | None | | | | I13V, K14KR, M36I, R41K, L63LP, L89M | D |
| | CP076303083 | CP076303083 | HQ995260 | None | | | | T12P, I13V, L19I, M36I, R41K, D60E, L63P, I64V, K70R | D |
| | CP076303084 | CP076303084 | HQ995261 | None | | | | I13V, M36I, N37D, R41K, L63T, I64V, E65D, K70R | D |
| | CP076303089 | CP076303089 | HQ995266 | None | | | | L10V, I13V, M36I, R41K | D |
| | CP076303096 | CP076303096 | HQ995272 | None | | | | I15V, M36I, R41K | D |
| | CP076303098 | CP076303098 | HQ995274 | None | | | | I13V, L33LV, M36I, R41K, I62V, L63P, I64V, H69Y, I72E | D |
| | CP076303099 | CP076303099 | HQ995275 | None | | | | I13V, M36I, R41K, Q61H, I62V, I64V, C67Y | D |
| | CP076303101 | CP076303101 | HQ995277 | None | | | L10F | I15V, Q18QH, L19I, E35D, M36I, R41K, L63LI, I64V, H69Q | D |
| | CP076303117 | CP076303117 | HQ995293 | None | | | | I13V, M36I, R41K, Q61H, I64V | D |
| | CP076303123 | CP076303123 | HQ995297 | None | | | | I13V, M36I, N37D, R41K, R57K, I62V, L63P, I64V, E65D, H69Y, K70R, I72V | D |
| | CP076303124 | CP076303124 | HQ995298 | None | | | | E35D, M36I, R41K, L63P | D |
| | CP076300701 | CP076300701 | HQ995309 | None | | | | L10I, I13V, G16E, M36I, R41K, L63P, I64V, E65D | D |
| | CP076300709 | CP076300709 | HQ995312 | None | | | | I13V, I15V, M36I, R41K, L63H, I64V, E65D, N98K | D |
| | CP076300725 | CP076300725 | HQ995319 | None | | | | I13V, K14K*, M36I, R41K, I64IV | D |
| | CP076300734 | CP076300734 | HQ995323 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, L63Q, I64V | D |
| | CP076300752 | CP076300752 | HQ995330 | None | | | | L10V, I13V, M36I, R41K, L63LFPS, I64V | D |
| | CP076300772 | CP076300772 | HQ995340 | None | | | | L10V, I13V, G16E, M36I, R41K, L63C | D |
| | CP076300778 | CP076300778 | HQ995345 | None | | | | G16E, M36I, R41K, R57RK | D |
| | CP076300786 | CP076300786 | HQ995350 | None | | | | L10I, I13V, M36I, R41K, I62V, L63Q, I64V, H69Y | D |
| | CP076300791 | CP076300791 | HQ995355 | None | | | | I13V, K14R, M36I, N37D, R41K, Q61H, I64V | D |
| | CP076300798 | CP076300798 | HQ995359 | None | | | | I13V, K14KR, K20KR, M36I, N37D, R41K, L63Q, I64V, E65D, I72V | D |
| | CP076300800 | CP076300800 | HQ995361 | None | | | | I15IV, E35D, M36I, R41K, I62V, L63P, E65D, K70R | D |
| | CP076300825 | CP076300825 | HQ995363 | None | | | | I13V, M36I, R41K, I64V, I72V | D |
| | CP076300863 | CP076300863 | HQ995364 | None | | | | I13V, L19H, M36I, R41K, I64V, H69HY | D |
| | CP076301886 | CP076301886 | HQ995365 | None | | | | I13V, G16E, K20R, M36I, R41K, I62V, L63H, I64V, E65D | D |
| | CP076301888 | CP076301888 | HQ995367 | None | | | | L10LV, M36I, R41K | D |
| | CP076301898 | CP076301898 | HQ995377 | None | | | | I13V, K20R, M36I, R41K, I62V, L63T, I64V, E65D, I72V | D |
| | CP076301899 | CP076301899 | HQ995378 | None | | | | I13V, E35D, M36I, R41K, R57RK, D60E, I62V, I64V | D |
| | CP076301909 | CP076301909 | HQ995384 | None | | | | I13V, K20R, M36I, R41K, I64V, I72IV | D |
| | CP076301919 | CP076301919 | HQ995391 | None | | | | M36I, R41K, I62V, L63P, I93L | D |
| | CP076301931 | CP076301931 | HQ995399 | None | | | | L19I, M36I, R41K, L63S, I64V, E65D | D |
| | CP076301939 | CP076301939 | HQ995405 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, V77I | D |
| | CP076301940 | CP076301940 | HQ995406 | None | | | | L10LQ, I13V, K20KR, M36I, R41K, I62IV, L63P, I64IV, I72V | D |
| | CP076301945 | CP076301945 | HQ995410 | None | | | | M36I, N37D, R41K, I64V, H69Y | D |
| | CP076301946 | CP076301946 | HQ995411 | None | | | L33I | I13V, G16E, M36I, R41K, R57K, L63P, I64V, I72V | D |
| | CP076301954 | CP076301954 | HQ995419 | None | | | | I13V, M36I, R41K, L63P, I64V, H69Y, I72V, V77I | D |
| | CP076301957 | CP076301957 | HQ995422 | None | | | | I15V, M36I, R41K | D |
| | CP076301961 | CP076301961 | HQ995425 | None | | | | L10IV, I13IV, G16E, M36I, R41K, I72V | D |
| | CP076301963 | CP076301963 | HQ995427 | None | | | | L10V, I13E, I15K, M36I, R41K, I64V | D |
| | CP076301964 | CP076301964 | HQ995428 | None | | | | L10V, M36I, R41K, I64V, C67CY | D |
| | CP076301972 | CP076301972 | HQ995436 | None | | | V11I | L10V, K20V, M36I, P39T, R41K, L63Q, I93M | D |
| | CP076301975 | CP076301975 | HQ995439 | None | | | | L10V, T12K, I13V, L19I, M36I, N37D, R41K, L63P, I64L, I72IV | D |
| | CP076301982 | CP076301982 | HQ995443 | None | | | | L10V, I13V, G17E, M36I, R41K | D |
| | CP076301983 | CP076301983 | HQ995444 | None | | | | I13V, M36I, R41K, Q61D, I62V, L63P, I64V, E65D, K70R, I72T | D |
| | CP076301984 | CP076301984 | HQ995445 | None | | | | L10V, L33LV, M36I, N37S, R41K, I64V | D |
| | CP076301986 | CP076301986 | HQ995446 | None | | | | L10I, T12TS, I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V, E65D, I72V | D |
| | CP076301994 | CP076301994 | HQ995449 | None | | | | L10V, M36I, R41K, L63P, I93L | D |
| | CP076302079 | CP076302079 | HQ995463 | None | | | | L10V, T12K, G17E, M36I, R41K, L63P, I64L, H69Q | D |
| | CP076302895 | CP076302895 | HQ995468 | None | | | | I15V, G16E, K20R, M36I, R41K, L63T, E65D, I72T | D |
| | CP076302897 | CP076302897 | HQ995469 | None | | | | L10V, I13V, M36I, R41K, L63C, I64V | D |
| | CP076302927 | CP076302927 | HQ995484 | None | | | | I13V, M36I, R41K, L63LP, I64V | D |
| | CP076302933 | CP076302933 | HQ995489 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69HY, V77I | D |
| Kao (2011) | Pat009 | 40398 | HQ658031 | None | | | | T12TI, K14KEGR, I15V, Q18QH, L19LIKQ, M36I, N37D, P39PL, R57K, D60E, I62IV, L63P, E65EK | D |
| Kasang (2011) | 32653 | 32653 | HM572338 | None | | | | E21K, E35D, M36I, N37D, R41K, Y59F, I64V, E65K, H69Y, R87RK | D |
| | 17182 | 17182 | HM572343 | None | | | | K14KR, K20R, E35D, M36I, N37D, L63LPS, I64IV, H69Q, I72V | D |
| | 32638 | 32638 | HM572344 | None | | | | L10V, I13V, M36I, R41K, L63P, H69Y | D |
| | 17199 | 17199 | HM572345 | None | | | | I13V, I15V, L19I, M36I, R41K, L63T, I64V, E65D | D |
| | 3318 | 3318 | HM572347 | None | | | | I13V, M36I, R41K, D60E, I62V, L63P, I64V, I72M | D |
| | 2035 | 2035 | HM572348 | None | | | | I13V, M36I, R41K, K43KR, L63Q, I64V | D |
| | 17184 | 17184 | HM572350 | None | | | | I13V, M36I, R41K, L63P, I64V | D |
| | 32648 | 32648 | HM572351 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, L63H, I64V, E65D | D |
| | 17193 | 17193 | HM572354 | None | | | | L10V, T12I, I13V, G16E, M36I, N37T, P39S, R41K, L63C, I64V | D |
| | 32661 | 32661 | HM572355 | None | | | V11VI | I13IV, I15IV, L19X, M36I, N37D, R41K, L63CS, I64IV, E65ED | D |
| | 2024 | 2024 | HM572357 | None | | | | I13V, K20R, M36I, R41K, I62V, L63T, I64IV, E65D | D |
| | 32650 | 32650 | HM572361 | None | | | | T12TA, I13V, K14KR, K20R, M36I, N37D, R41K, L63C, I64V, H69Y | D |
| | 17196 | 17196 | HM572364 | None | | | | I13V, G16E, E35D, M36I, R41K, K45KR, L63AV, I64V, E65D, H69HY, K70KR, I72IT | D |
| | 1332 | 1332 | HM572384 | None | | | | T12E, I13V, M36I, G40GE, R41K, I64V, E65EK, H69K, R87RK | D |
| | 17200 | 17200 | HM572412 | None | | | G48GR | T12S, I15V, L19V, A28AP, M36I, N37K, R41N, G51GR, R57RS, L63P, I72IV | D |
| Ndembi (2011) | NTCPS727 | NTCPS727 | HQ702619 | None | | | | I13V, M36I, N37T, R41K, I64V | D |
| | NTCPS723 | NTCPS723 | HQ702623 | None | | | | T12A, I13V, M36I, R41K, L63P, I64V, I72V | D |
| | NTCPS722 | NTCPS722 | HQ702624 | None | | | | I13V, K14R, M36I, N37D, R41K, L63P, I64V | D |
| | NTCPS721 | NTCPS721 | HQ702625 | None | | | | I13V, M36I, R41K, I64V | D |
| | AICPS430 | AICPS430 | HQ702636 | None | | | | I13V, M36I, R41K | D |
| | AICPS439 | AICPS439 | HQ702639 | None | | | | M36I, N37D, L63Q, I64V | D |
| | NTCPS728 | NTCPS728 | HQ702642 | None | | | | M36I, R41K, L63A, I64V, K70R, I93L | D |
| | AICPS269 | AICPS269 | HQ702646 | None | | | L33I | I13V, M36I, R41K, I64V, K70R | D |
| | NTCPS735 | NTCPS735 | HQ702647 | None | | | | I13V, G16E, M36I, R41K | D |
| | AICPS233 | AICPS233 | HQ702655 | None | | | | E35D, M36I, R41K, Q61H, I64V | D |
| | AICPS181 | AICPS181 | HQ702658 | None | | | | I13V, M36I, R41K, I62V, I64V | D |
| | NTCPS704 | NTCPS704 | HQ702666 | None | | | | I13V, K14R, M36I, R41K, Q61E, I64V | D |
| | AICPS337 | AICPS337 | HQ702667 | None | | | | L10V, I13V, I15V, M36I, R41K, I64V, C67Y | D |
| | UGNTC713 | UGNTC713 | HQ702683 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | UGAIC431 | UGAIC431 | HQ702684 | None | | | | M36I, R41K | D |
| Ng (2011) | HM091 | HM091 | JN029803 | None | | | | I13V, G16E, M36I, N37D, I62V, L63S, I64V, E65D | D |
| Rolland (2011) | 1211 | consensus_1211 | JF320144 | None | | | | M36I, Q61E, I64V, H69Y | D |
| Sanabani (2011) | BR2019 | BR2019 | JN692448 | None | | | | E35D, M36I, R41K, R57K, Q61N, I64V, I72V | D |
| | BR1067 | BR1067 | JN692456 | None | | | | I13V, M36I, R57K, Q61N, L63P | D |
| Santos (2011) | J331 | J331_PR | JN010705 | None | | | | M36I, N37T, R41K, I62V, L63P, H69K, I72V, L89M, I93L | D |
| van Zyl (2011) | A26 | A26 | JN638154 | None | | | | T12P, I13V, M36I, R41K, L63P, I64V | D |
| Avila-Rios (2012) | B000M90TS9 | B000M90TS9 | KC168115 | None | | | | T12S, I13V, G16E, L19V, K20R, M36I, R57K, L63S, I64V, E65D, I72V | D |
| | OF00M98GSH | OF00M98GSH | KC169487 | None | | | | L10V, I15V, M36I, R41K, L63A | D |
| | V000MO2NT7 | V000MO2NT7 | KC169690 | None | | | | K20R, E35D, M36I, R41K, Q61H, I62V, L63LP | D |
| | E000M_4KSG | E000M_4KSG | KC168516 | None | | | | I13V, K20R, M36I, R57K, L63APS, I64IV, E65ED, H69R, K70T | D |
| | E000M61ISR | E000M61ISR | KC168527 | None | | | | T12TS, I13V, G16E, M36I, P39S, R41K, K45R, I62V, L63S, I64V, E65D, T91V | D |
| | G000M83RTS | G000M83RTS | KC168850 | None | | | | M36I, R41K, I62V, L63P, I64L, I93L | D |
| Chen (2012) | YN09DH0036 | YN09DH0036 | JQ658506 | None | | | | T12S, K14R, L19I, M36I, R41K, R57K, L63P, I93L | D |
| | YN09DH0038 | YN09DH0038 | JQ658508 | None | | | | T12P, K14R, I15V, L19T, M36I, R41K, L63P, I72V, I93L | D |
| | YN09DH0084 | YN09DH0084 | JQ658553 | None | | | | T12S, I15IV, L19I, E35D, M36I, R41K, K45R, I62V, L63PS, I64V, H69HY | D |
| | YN10DH0131 | YN10DH0131 | JQ658751 | None | | | | L19M, E34G, M36I, R41K, R57K, L63P, I64L, I93L | D |
| da Silveira (2012) | BRMS40 | BRMS40 | JF342293 | None | | | | E35D, M36I, R41K, Q61N, I64V | D |
| | BRMS05_10 | BRMS05_10 | JF342316 | None | | | | E35D, M36I, R41K, R57K, Q61N, L63P, I64L, I93L | D |
| De Gascun (2012) | IRL32980 | IRL32980 | JN622307 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | IRL32981 | IRL32981 | JN622308 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | IRL03800 | IRL03800 | JN622620 | None | | | | L10V, E35D, M36I, N37E, R41K, L63P, C67S | D |
| Delwart (2012) | 480-0722-4 | 480-0722-4 | JN214951 | None | | | | I15V, G16E, K20R, M36I, N37K, R41K, Q61E, I62V, L63T, E65D, I72T, V82I | D |
| | 479-2547-7 | 479-2547-7 | JN215097 | None | | | | I15V, E35D, M36I, N37D, R41K, K43R, Q61E, L63P, H69Q, A71T, I72V, I93L | D |
| | 479-7344-2 | 479-7344-2 | JN215100 | None | | | | L10V, I13V, M36I, K45R, L63P, I64L, V77I, I93L | D |
| El Annaz (2012) | 1488 | 1488.PR | JN185238 | None | | | | L19Q, K20M, E35D, M36I, R41K, L63S, I64V | D |
| | 9738 | 9738.PR | JN185262 | None | | | | I13IV, E35D, M36I, R41K, I62V, L63A, I64V | D |
| Gaspareto (2012) | PAR4 | PAR4PT | HM752149 | None | | | | K14T, I15V, K20R, M36I, R41K, R57K, Q61D, E65D | D |
| Hassan (2012) | RS09000853 | RS09000853 | HQ441598 | None | | | | T12K, I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69C | D |
| | RS09000858 | RS09000858 | HQ441603 | None | | | | L10V, I13V, M36I, N37D, R41K, I64V, H69Y | D |
| | RS09000908 | RS09000908 | HQ441653 | None | | | | I13IV, E35D, M36I, N37D, R41K, L63P, K70R | D |
| | RS09000921 | RS09000921 | HQ441665 | None | | | | I13V, K20R, M36I, N37D, R41K, I64V | D |
| | RS09000935 | RS09000935 | HQ441677 | None | | | | L10V, T12TK, I13V, M36I, R41K, D60E, L63P | D |
| | RS09000981 | RS09000981 | HQ441716 | None | | | | I13V, M36I, R41K, K45KR, L63P, I64V, E65D, I72IV | D |
| | RS11000235 | RS11000235 | JQ698340 | None | | | | I13V, M36I, R41K, K45KR, D60E, I62V, L63Q, I64V, H69Y | D |
| | RS11000246 | RS11000246 | JQ698346 | None | | | | I13V, K14R, L19I, L33V, M36I, R41K, I64V | D |
| | RS11000261 | RS11000261 | JQ698358 | None | | | | I13V, L33V, M36I, R41K, L63P, I64V, H69Y | D |
| | RS11000294 | RS11000294 | JQ698381 | None | | | L33F | I13V, G16E, L19LP, M36I, N37D, R41K, L63Q, I64V, K70KR, V75I | D |
| | RS11000296 | RS11000296 | JQ698382 | None | | | | E35D, M36I, R41K, I62V, L63LQ, I64V, T96TP | D |
| | RS11000303 | RS11000303 | JQ698388 | None | | | | I13V, M36I, N37S, R41K, I62IV, L63H, I64V | D |
| | RS11000305 | RS11000305 | JQ698390 | None | | | | I13V, K14R, I15V, M36I, N37D, R41K, I62V, L63H | D |
| | RS11000359 | RS11000359 | JQ698426 | None | | | | I13V, M36I, R41K, I62V, L63P, I64V, H69Y, I72IT | D |
| Karlsson (2012) | SE_203 | SE_203 | JQ698808 | None | | | L33F | I13V, M36I, R41K, I62V, I64V, C67CS | D |
| | SE_204 | SE_204 | JQ698809 | None | | | | I13V, M36I, N37S, R41K, I64V | D |
| | SE_209 | SE_209 | JQ698814 | None | | | | L10I, I13V, I15V, G16E, E35N, M36I, N37D, R41K, K43R, I62V, L63Q, I64V, H69Q | D |
| | SE_265 | SE_265 | JQ698851 | None | | | | L10V, I13V, K14KR, G16GE, M36I, R41RK, I62V, L63N, I64V | D |
| Machado (2012) | CUPL0904 | CUPL0904 | HQ655337 | None | | | | K20R, E35D, M36I, N37S, R41K, K43R, Q61N, L63S, H69Q | D |
| | CUPL0909 | CUPL0909 | HQ655342 | None | | | | M36I, R41K, K43R, L63P, H69Q | D |
| | CUPL0910 | CUPL0910 | HQ655343 | None | | | | E35D, M36I, R41K, K43R, I62V, L63P, H69Q, I72V | D |
| | CUPL0911 | CUPL0911 | HQ655344 | None | | | | M36I, R41K, L63P, H69Q, K70R | D |
| | CUPL0915 | CUPL0915 | HQ655348 | None | | | | M36I, R41K, K43R, L63P, H69Q | D |
| | CUPL0916 | CUPL0916 | HQ655349 | None | | | | M36I, R41K, K43R, L63P, H69Q, I72V | D |
| | CUPL0925 | CUPL0925 | HQ655358 | None | | | | K20R, M36I, R41K, K43R, D60E, I62V, L63P, H69Q | D |
| | CUPL0931 | CUPL0931 | HQ655364 | None | | | | L10V, I13V, G16A, M36I, R41K, H69Q | D |
| | CUPL0932 | CUPL0932 | HQ655365 | None | | | | L19I, E35D, M36I, R41K, L63P, H69Q | D |
| | CUPL0934 | CUPL0934 | HQ655367 | None | | | | E35D, M36I, R41K, L63P, H69Q, K70Q, I93L | D |
| | CUPL0940 | CUPL0940 | HQ655373 | None | | | | M36I, R41K, L63P, H69Q, K70R | D |
| | CUPL0941 | CUPL0941 | HQ655374 | None | | | | T12P, L19I, K20R, E35D, M36I, R41K, L63P, H69Q, K70E, A71T, I93L | D |
| | CUPL1005 | CUPL1005 | HQ655382 | None | | | | E35D, M36I, R41S, L63P, H69Q | D |
| | CUPL1007 | CUPL1007 | HQ655384 | None | | | | M36I, R41K, K43R, I62V, L63P, H69Q, K70R, I72M, V82I, I93L | D |
| | CUPL1015 | CUPL1015 | HQ655392 | None | | | | L10I, E35D, M36I, R41K, L63P, H69Q, K70Q, I93L | D |
| | CUPL1018 | CUPL1018 | HQ655395 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63S, I64V, H69Q, V75I | D |
| | CUPL1028 | CUPL1028 | HQ655405 | None | | | | L10I, I13V, K14R, I15V, G16E, E35D, M36I, N37S, R41K, I62R, L63P, H69Q | D |
| | CUPL1030 | CUPL1030 | HQ655407 | None | | | | K20R, E35D, M36I, N37S, R41K, L63P, H69HQ | D |
| | CUPL1048 | CUPL1048 | JN000020 | None | | | | I15V, E35D, M36I, R41K, K43R, L63P, H69Q, V82I | D |
| | CUPL1054 | CUPL1054 | JN000026 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, G49E, I62V, L63S, H69Q | D |
| | CUPL1062 | CUPL1062 | JN000034 | None | | | | L10V, E35D, M36I, R41K, D60E, L63P, H69Q, V77I | D |
| | CUPL1067 | CUPL1067 | JN000039 | None | | | | I13V, E35D, M36I, R41K, D60E, L63P, H69Q | D |
| | CUPL1073 | CUPL1073 | JN000045 | None | | | | M36I, R41K, K43R, Q61E, L63P, H69Q | D |
| | CUPL1080 | CUPL1080 | JN000052 | None | | | | E35D, M36I, R41K, K43R, I62V, L63P, H69Q, K70Q, A71T, I93L | D |
| | CUPL1081 | CUPL1081 | JN000053 | None | | | | M36I, R41K, I62V, L63P, I93L | D |
| | CUPL1096 | CUPL1096 | JN000068 | None | | | Q58E | T12E, I15V, L19I, E35D, M36I, N37D, R41K, K43R, R57K, D60E, Q61E, L63P, H69Q, I93L | D |
| | CUPL1105 | CUPL1105 | JX194184 | None | | | | I13V, G16GE, M36I, R41K, L63P, H69Q | D |
| | CUPL1126 | CUPL1126 | JX194205 | None | | | | E35D, M36I, R41K, K43R, I62V, L63P, H69Q | D |
| | CUPL1127 | CUPL1127 | JX194206 | None | | | | M36I, R41K, K43R, L63P, H69Q | D |
| | CUPL1132 | CUPL1132 | JX194211 | None | | | | K20R, E35D, M36I, N37D, R41K, K43R, G49E, G51E, Q61E, L63P, H69Q | D |
| | CUPL1138 | CUPL1138 | JX194217 | None | | | | K20R, E35D, M36I, N37D, R41K, R57K, L63T, E65D, H69R, I72M | D |
| | CUPL1142 | CUPL1142 | JX194221 | None | | | | E35D, M36I, R41K, R57K, L63P, I64V, H69Q, K70Q | D |
| | CUPL1153 | CUPL1153 | JX194232 | None | | | | M36I, R41K, D60E, I62V, L63P, H69Q | D |
| Murillo (2012) | 11030 | 11030 | KC412728 | None | | | | K14KR, E35D, M36I, R41K, D60E, I62V, L63P, H69Y, I72M | D |
| | 11057 | 11057 | KC412733 | None | | | | E35D, M36I, R41K, D60E, I62V, L63P, H69Y, I72M | D |
| | 11283 | 11283 | KC412753 | None | | | | L10I, M36I, N37NK, R41K, I62V, L63P, I64MV, H69Y, I72M, V82VI, I93L | D |
| | 11448 | 11448 | KC412778 | None | | | | L10IV, G16E, E35D, M36I, P39S, R41K, D60E, I62V, L63P, I93L | D |
| Musyoki (2012) | DGM.2 | DGM.2 | JN176287 | None | | | | T12S, I15V, L19I, E35D, M36I, P39T, R41K, L63V, H69K, L89M, I93L | D |
| Nazziwa (2012) | 1023620 | 1023620 | JX498972 | None | | | | L10V, I13V, I15V, E35D, M36I, N37S, R41K, K45R, R57K, L63Q, I64V | D |
| | 1005501 | 1005501 | JX498974 | None | | | | I13V, I15V, M36I, N37D, P39L, R41K, L63Q, I64V, E65D | D |
| | 3036401 | 3036401 | JX498975 | None | | | | I13V, L33V, M36I, R41K, L63Q, I64V, E65D | D |
| | 3100501 | 3100501 | JX498978 | None | | | | M36I, R41K, I64V | D |
| | 3053501 | 3053501 | JX498979 | None | | | | I13V, M36I, R41K, L63Q, I64V | D |
| | 3111130 | 3111130 | JX498980 | None | | | | I13V, K20R, M36I, N37T, R41K, I62V, L63P, I64V | D |
| | 3153701 | 3153701 | JX498981 | None | | | | I13V, K20R, M36I, N37D, R41K, L63Q, I64V, E65D, I72V | D |
| | 3111801 | 3111801 | JX498984 | None | | | | I13V, K20R, M36I, N37K, R41K, I64V, K70R | D |
| | 3039201 | 3039201 | JX498992 | None | | | | M36I, D60E, L63S, I64V, V77I | D |
| | 3039202 | 3039202 | JX498993 | None | | | | M36I, D60E, L63S, I64V, V77I | D |
| | 3152701 | 3152701 | JX498997 | None | | | | K14R, M36I, R41K, L63P, I64L | D |
| | 3154302 | 3154302 | JX498998 | None | | | | T12S, I15V, L19V, E35D, M36I, N37K, R41N, D60E, L63P, V77I | D |
| | 5120902 | 5120902 | JX499007 | None | | | | I13V, M36I, R41K, D60E, I64V | D |
| | 6321430 | 6321430 | JX499013 | None | | | | I13V, M36I, R41K, I64V, K70R, V82I | D |
| | 7054101 | 7054101 | JX499015 | None | | | | I13V, I15V, M36I, R41K, I64V, H69Y | D |
| Reynolds (2012) | B0565 | B0565-0 | JN652140 | None | | | | I13V, L19I, M36I, R41K, D60E, I62V, I64V, H69HY | D |
| | | B0565-1 | JN652171 | None | | | | I13V, L19I, M36I, R41K, D60E, I62V, L63LP, I64V, H69HY | D |
| | C0152 | C0152-0 | JN652143 | None | | | | I13V, M36I, N37NS, R41K, I64V, I72IV | D |
| | | C0152-1 | JN652176 | None | | | | I13V, M36I, R41K, I64V, I72IV | D |
| | C0717 | C0717-0 | JN652144 | None | | | | I13IV, M36I, R41K, K45KR, L63Q, I72V | D |
| | | C0717-1 | JN652177 | None | | | | I13V, M36I, R41K, L63Q, I72V | D |
| | D0761 | D0761-0 | JN652148 | None | | | | L10V, T12TA, I13V, M36I, R41K, I64V | D |
| | | D0761-1 | JN652181 | None | | | | L10V, I13V, M36I, R41K, I64V | D |
| | E0090 | E0090-0 | JN652149 | None | | | | I13V, M36I, R41K, L63P, I64V, H69Y, I72V | D |
| | | E0090-1 | JN652182 | None | | | | I13V, M36I, R41K, K45R, L63P, I64V, H69Y, I72V | D |
| | E0706 | E0706-0 | JN652151 | None | | | | T12TS, I13IV, M36I, R41K, I64V, H69HY | D |
| | | E0706-1 | JN652184 | None | | | | T12TS, Q18QH, L19LI, M36I, R41K, L63LQ, I64V | D |
| | F0703 | F0703-0 | JN652155 | None | | | | L10IV, I13V, K14KR, E35D, M36I, R41K, I64V, H69Y | D |
| | | F0703-1 | JN652191 | None | | | | L10V, I13V, K14KR, E35D, M36I, R41K, I64V, H69HY | D |
| | F0719 | F0719-0 | JN652156 | None | | | V11VI | L10I, I13V, E35D, M36I, R41K, K45KR, R57RK, L63X, I64IMV, L89LM, L97LI | D |
| | | F0719-1 | JN652192 | None | | | V11I | L10I, I13V, E35D, M36I, R41K, L63Q, I64V | D |
| | G0772 | G0772-0 | JN652159 | None | | | | L10I, V11L, T12P, I13V, L19I, E35D, M36I, R41K, L63*PQS, I64V, I72V | D |
| | | G0772-1 | JN652195 | None | | | | L10I, V11L, T12P, I13V, L19I, E35D, M36I, R41K, L63Q, I64V, I72V | D |
| | H0710 | H0710-0 | JN652160 | None | | | | L10IV, I13V, K14KR, G16GE, M36I, R41K, I64IV, I72V, L89LM | D |
| | | H0710-1 | JN652197 | None | | | | L10IV, I13V, K14KR, M36I, R41K, I64IV, I72V | D |
| | H0756 | H0756-0 | JN652161 | None | | | | I13V, M36I, R41K, L63PS, I64V | D |
| | J0594 | J0594-0 | JN652163 | None | | | | I13V, M36I, R41K, K45KR, I64V, I72V | D |
| | | J0594-1 | JN652199 | None | | | | I13V, M36I, R41K, K45R, I64V, I72V | D |
| | J7221 | J7221-0 | JN652165 | None | | | | I13V, I15V, M36I, R41K, I62V, L63H, I64V, K70R | D |
| | | J7221-1 | JN652201 | None | | | | I13V, I15V, M36I, R41K, I62V, L63H, I64V, K70R | D |
| | A0260 | A0260-1 | JN652169 | None | | | | M36I, R41K, I62V, I64V, E65D, T74TS | D |
| | B0708 | B0708-1 | JN652172 | None | | | | L10I, I13V, G16E, M36I, R41K, L63V | D |
| | F0406 | F0406-1 | JN652189 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | F0701 | F0701-1 | JN652190 | None | | | | I13V, K20R, M36I, R41K | D |
| Sigaloff (2012) | KEKSN411 | KEKSN411 | JN628476 | None | | | | I13V, G17E, K20R, M36I, R41K | D |
| Ssemwanga (2012) | RCC_TDR_356892 | RCC_TDR_356892 | JQ266020 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | RCC_TDR_358745 | RCC_TDR_358745 | JQ266021 | None | | | | L10I, I13V, M36I, R41K, L63Q, I64V, I72V | D |
| | RCC_TDR_359881 | RCC_TDR_359881 | JQ266022 | None | | | | I13V, I15V, E35D, M36I, R41K, L63T, I64V, E65D | D |
| | RCC_TDR_481029 | RCC_TDR_481029 | JQ266024 | None | | | | I13V, L19I, M36I, R41K, D60E, I62V, L63P, H69Y, I72T | D |
| | RCC_TDR_483689 | RCC_TDR_483689 | JQ266025 | None | | | | L19I, M36I, R41K, I62V, L63A, I64V, E65D, H69Y, I72V | D |
| | RCC_TDR_480650 | RCC_TDR_480650 | JQ266026 | None | | | | M36I, R41K, L63S, I64V | D |
| | RCC_TDR_355927 | RCC_TDR_355927 | JQ266028 | None | | | | E35D, M36I, R41K, L63P, I64L | D |
| | RCC_TDR_359885 | RCC_TDR_359885 | JQ266030 | None | | | | I13V, I15V, E35D, M36I, R41K, L63T, I64V, E65D | D |
| | RCC_TDR_480631 | RCC_TDR_480631 | JQ266033 | None | | | | I13V, L19I, M36I, R41K, Q61N, L63Q, I64V, E65D, H69Y, I72T | D |
| | RCC_TDR_805324 | RCC_TDR_805324 | JQ266035 | None | | | | I13V, M36I, R41K, I64V | D |
| | RCC_TDR_358027 | RCC_TDR_358027 | JQ266038 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, I72V | D |
| | RCC_TDR_481346 | RCC_TDR_481346 | JQ266040 | None | | | | K14R, L19I, M36I, R41K, L63S, I64V, E65D | D |
| | RCC_TDR_482987 | RCC_TDR_482987 | JQ266042 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | RCC_TDR_483644 | RCC_TDR_483644 | JQ266043 | None | | | | G16E, K20R, M36I, P39S, R41K, L63Q, I64V, H69Y, K70KR | D |
| | RCC_TDR_359957 | RCC_TDR_359957 | JQ266045 | None | | | | T12A, L19I, E35D, M36I, R41K, Q61N, L63S, I64V, E65D, V77I | D |
| | RCC_TDR_480245 | RCC_TDR_480245 | JQ266047 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC_TDR_483451 | RCC_TDR_483451 | JQ266048 | None | | | | I13V, K20R, M36I, R41K, L63Q, I64V, E65D, V75I | D |
| | RCC_TDR_483515 | RCC_TDR_483515 | JQ266050 | None | | | | I13V, L19I, M36I, R41K, Q61H, I64V, H69Y, I72T, V75I | D |
| | RCC_TDR_483771 | RCC_TDR_483771 | JQ266051 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | RCC_TDR_483963 | RCC_TDR_483963 | JQ266052 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V, H69Y | D |
| | RCC_TDR_802510 | RCC_TDR_802510 | JQ266053 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC_TDR_359989 | RCC_TDR_359989 | JQ266063 | None | | | | T12I, I13V, E35D, M36I, R41K, L63M, H69K, L89M | D |
| | RCC_TDR_480013 | RCC_TDR_480013 | JQ266064 | None | | | | G16E, K20R, M36I, P39L, R41K, L63Q, I64V | D |
| | RCC_TDR_482650 | RCC_TDR_482650 | JQ266066 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC_TDR_483555 | RCC_TDR_483555 | JQ266068 | None | | | | G16E, K20R, M36I, P39S, R41K, L63Q, I64V | D |
| | RCC_TDR_807857 | RCC_TDR_807857 | JQ266069 | None | | | | M36I, R41K, L63S, I64V | D |
| | RCC_TDR_480146 | RCC_TDR_480146 | JQ266072 | None | | | | I13V, K20R, M36I, R41K, H69K | D |
| | RCC-TDR-359889 | RCC-TDR-359889 | JQ266073 | None | | | | I13V, K20R, M36I, R41K, W42W*, G51GE, L63A, I64V | D |
| | RCC-TDR-480431 | RCC-TDR-480431 | JQ266075 | None | | | | I13V, M36I, R41K, L63P, H69Y, I72V | D |
| | RCC_TDR-483620 | RCC_TDR-483620 | JQ266077 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC_TDR_356261 | RCC_TDR_356261 | JQ266080 | None | | | | I13V, K20R, M36I, R41K, H69K | D |
| | RCC-TDR-483664 | RCC-TDR-483664 | JQ266081 | None | | | | I13V, M36I, R41K, I64V | D |
| | RCC_TDR-353759 | RCC_TDR-353759 | JQ266089 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, E65D, H69Y | D |
| | RCC-TDR-483707 | RCC-TDR-483707 | JQ266091 | None | | | | M36I, R41K, I64V | D |
| Ssemwanga (2012) | 1204HR | 1204HR | JF800191 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | 1420HR | 1420HR | JF800192 | None | | | | I13V, I15V, E35D, M36I, R41K, L63Q, I64V, I72V, V77I | D |
| | 1444HR | 1444HR | JF800193 | None | | | | L10I, M36I, R41K, L63P, I64V, C67Y | D |
| | 3204HR | 3204HR | JF800197 | None | | | | I13V, M36I, R41K, Q61N, L63S, I64V, E65D | D |
| | 3981HR | 3981HR | JF800200 | None | | | | I13V, K20R, E35D, M36I, R41N, I62V, I64V, H69Y | D |
| | 6601HR | 6601HR | JF800208 | None | | | | I13V, K20I, M36I, P39T, R41K, I64V, T91A | D |
| | 7498HR | 7498HR | JF800212 | None | | | | I13V, M36I, R41K, L63A, I64V | D |
| | 0322HR | 0322HR | JF800213 | None | | | | I13V, M36I, R41K, L63Q, I64V, K70R | D |
| | 7177HR | 7177HR | JF800219 | None | | | | I13V, K20R, M36I, N37D, R41K, L63P, I64V, E65D, K70R, I72V | D |
| | 2910HR | 2910HR | JF800222 | None | | | | K20R, M36I, R41K, L63V, E65D, I72V | D |
| | 2946HR | 2946HR | JF800223 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, D60E, L63S, I64L, H69K, L89M | D |
| | 5443HR | 5443HR | JF800226 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V | D |
| Yang (2012) | KN-14 | KN-14 | JQ616915 | None | | | | T12S, I13V, M36I, R41K, I62V, L63S, I64V | D |
| | KN-16 | KN-16 | JQ616916 | None | | | | T12S, L19T, M36I, R41K, L63H, I64M | D |
| | KN-20 | KN-20 | JQ616941 | None | | | | T12S, I13V, I15V, M36I, R41K, L63T, I64V | D |
| | KEN-34T | KEN-34T | | None | | | | T12S, L19I, M36I, R41K, I64V, H69Q | D |
| | KEN-32T | KEN-32T | | None | | | | R8P, V11F, I13V, G16E, M36I, R41K, L63H, K70KR, I72V | D |
| Youngpairoj (2012) | cm182bb | cm182bb | DQ166435 | None | | | Q58E | E35D, M36I, R41K, L63P, H69K, V77I | D |
| Alencar (2013) | RJ2-0022 | RJ2-0022 | JQ237949 | None | | | | E35D, M36I, R41K, R57K, Q61N, L63P, I64L, H69Y, V77I | D |
| | MG2-0008 | MG2-0008 | JQ237979 | None | | | | T12TA, E35D, M36I, R41K, R57K | D |
| | MG2-0004 | MG2-0004 | JQ237980 | None | | | | L10V, I15V, E35D, M36I, R41K | D |
| | MG2-0017 | MG2-0017 | JQ238023 | None | | | | L10V, I13V, I15V, Q18M, M36I, N37D, R41K, L63C | D |
| | PE2-0038 | PE2-0038 | JQ238029 | None | | | | I15V, Q18QH, M36I, R41K, L63A, I93L | D |
| | SP2-0018 | SP2-0018 | JQ238044 | None | | | | T4H, I13V, K14KR, K20R, M36I, R41K | D |
| | RJ2-0044 | RJ2-0044 | JQ238060 | None | | | | T12N, K14R, L19I, M36I, R57K, Q61S, L63S, I64V | D |
| | SP2-0036 | SP2-0036 | JQ238064 | None | | | | I13V, M36I, R41K, Q61D, I62IV, L63P, I64V, C67CHRY | D |
| | RJ2-0026 | RJ2-0026 | JQ238085 | None | | | | I15V, L19I, E35D, M36I, R41K, L63V, I64L, H69K | D |
| | RJ2-0063 | RJ2-0063 | JQ238088 | None | | | | Q7E, T12P, K14R, E35D, M36I, N37D, R41K, L63P, I64L, A71V, I72V, V77I, I93L | D |
| | MG2-0023 | MG2-0023 | JQ238092 | None | | | | I15V, L19T, E35D, M36I, R41K, L63P, H69Q, V77I | D |
| | RJ2-0062 | RJ2-0062 | JQ238096 | None | | | | I15V, L19I, E35D, M36I, R41K, L63P, H69K | D |
| | MG2-0036 | MG2-0036 | JQ238127 | None | | | | L10V, I15V, L19I, K20Q, M36I, R41K, K45R, R57K, I62V, L63P, I72IV, I93L | D |
| | RJ2-0095 | RJ2-0095 | JQ238222 | None | | | | E35D, M36I, N37D, R41K, L63P, I64L, A71V, I72E, V77I, I93L | D |
| Ferreira (2013) | BR09SP224 | BR09SP224 | HM534026 | None | | | | E35D, M36I, R41K, R57K, L63S, E65D, L89M | D |
| | BR09SP74 | BR09SP74 | HM534057 | None | | | | I15V, M36I, R41K, R57K, Q61N, E65D, I72IV | D |
| | BR09SP348 | BR09SP348 | HM534175 | None | | | | I15V, E35D, M36I, N37D, R41K, Q61H | D |
| Frentz (2013) | EHR-00826 | EHR-00826 | JX299551 | None | | | | T12A, I15V, G16E, M36I, R41K, D60E, I62V, L63T, I64V, I72T | D |
| | EHR-00912 | EHR-00912 | JX299555 | None | | | | L10V, I13V, I15IV, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| | EHR-11466 | EHR-11466 | JX299723 | None | | | | E35D, M36I, R41K, I64V, C67D, I72V | D |
| | EHR-20296 | EHR-20296 | JX299872 | None | | | | L10V, I15V, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, T74S, L89M | D |
| | EHR-25339 | EHR-25339 | JX299981 | None | | | | L10V, G16E, K20R, E35D, M36I, R41K, R57K, I62V, L63T, L89M | D |
| | EHR-25464 | EHR-25464 | JX299982 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | EHR-27129 | EHR-27129 | JX300011 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| | EHR-27715 | EHR-27715 | JX300019 | None | | | | L10I, T12AE, G16E, E35D, M36I, R41K, R57K, L63T, E65D, I72T, V77I, L89M, I93L | D |
| | EHR-41487 | EHR-41487 | JX300244 | None | | | | K20KR, E35D, M36I, R41K, I62IV, L63T, I64ILM, E65D, I72IT, V82VI, L89M | D |
| | EHR-42835 | EHR-42835 | JX300262 | None | | | | G16E, K20R, M36I, R41K, Q61E, I64V, H69Y, I72R, V77I | D |
| | EHR-44143 | EHR-44143 | JX300284 | None | | | | I13IV, K14KR, M36I, R41K, R57RK, I62IV, L63P, I64V | D |
| | EHR-49656 | EHR-49656 | JX300366 | None | | | | T12N, I15V, L19I, K20R, E35D, M36I, R41K, R57K, L63T, I72T, T74S, L89M | D |
| | EHR-57646 | EHR-57646 | JX300501 | None | | | | E35D, M36I, R41K, R57K, Q61N, L63C, H69Q | D |
| | EHR-60237 | EHR-60237 | JX300541 | None | | | | I13A, K14R, K20I, M36I, R41K, K43R, L63P | D |
| | EHR-64659 | EHR-64659 | JX300626 | None | | | | L10V, I15V, G16E, K20R, E35D, M36I, P39S, R41K, R57K, L63T, E65D, I72T, T74S, L89M | D |
| | EHR-65454 | EHR-65454 | JX300642 | None | | | | L10I, I13V, L33LV, M36I, I62V, L63S, I64V, C67E, I72L | D |
| | EHR-71598 | EHR-71598 | JX300747 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, P39T, R41K, L63T, E65D, I72T, L89M | D |
| | EHR-75358 | EHR-75358 | JX300821 | None | | | | T12P, K14R, E35D, M36I, R41K, K43R, L63P, H69Q | D |
| | EHR-75565 | EHR-75565 | JX300825 | None | | | | T12A, I15V, G16E, M36I, R41K, D60E, I62V, L63T, I64V, I72T | D |
| | EHR-76782 | EHR-76782 | JX300855 | None | | | | L10V, T12I, I13V, I15V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, I62V, L63T, E65D, I72T, T74TA, L89M | D |
| | EHR-81275 | EHR-81275 | JX300925 | None | | | | L10I, G16E, L19LI, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89LM | D |
| | EHR-87997 | EHR-87997 | JX301040 | None | | | | I13V, M36I, R41K, I62V, I64V, K70R | D |
| | EHR-92753 | EHR-92753 | JX301085 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | EHR-94228 | EHR-94228 | JX301102 | None | | | | I13V, I15V, L19LI, E35D, M36I, R41K, R57K, L63T, E65D, I72T, V82VI, L89M | D |
| Hawke (2013) | 22990325 | 22990325 | KC238076 | None | | | | M36I, R41K, I62V, L63S, E65D, I72T, Q92QK, I93IL | D |
| Temereanca (2013) | SR16 | SR16 | JX966491 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, P39S, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | SR20 | SR20 | JX966497 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M, I93M | D |
| | SR25 | SR25 | JX966502 | None | | | | I15V, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M, T96N | D |
| | SR30 | SR30 | JX966507 | None | | | | L10V, I15V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, I93V | D |
| | SR39 | SR39 | JX966514 | None | | | | L10I, I13V, I15V, G16E, E35D, M36I, P39T, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | SR42 | SR42 | JX966518 | None | | | | L10V, I13V, I15V, K20R, E35D, M36I, R41K, I62V, L63N, L89M, Q92K | D |
| | SR5 | SR5 | JX966523 | None | | | | K14Q, I15V, K20R, T26S, E35D, M36I, R41K, R57K, L63T, E65D, I66V, I72V, L89M | D |
| | SR6 | SR6 | JX966526 | None | | | | L10I, T12K, I13V, I15V, K20I, E35D, M36I, R41K, R57K, L63T, E65D, I72V, T74S, L89M | D |
| | SR60 | SR60 | JX966527 | None | | | | L10V, I13V, I15V, G16E, K20R, M36I, R41K, R57K, L63T, E65D, T74S, V82I, L89M | D |
| | SR65 | SR65 | JX966531 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, R41K, K43R, R57K, L63T, E65D, I72T | D |
| | SR66 | SR66 | JX966532 | None | | | | L10V, I15V, E35D, M36I, R41K, V56G, R57K, L63T, E65D, A71N, I72T, T74S, L89M | D |