| Author (yr) |
Patient |
Isolate |
Acc# |
PIs |
Wks | PIMajorDRMs |
PIMinorDRMs |
OtherMut | Subtype |
| Cornelissen (1997) | 92UG021 | 92UG021 | AF009396 | None | | | | I13V, M36I, R41K, L63T, I64V, E65D | D |
| | 92UG024 | 92UG024 | AF009397 | None | | | | I13V, M36I, N37D, R41K, I64V | D |
| | 92UG046 | 92UG046 | AF009401 | None | | | | I13V, M36I, R41K, I64V | D |
| | 92UG070 | 92UG070 | AF009406 | None | | | L10F | I13V, N37C, R41K, D60E, I64V | D |
| Gao (1998) | 94UG114 | 94UG114 | U88824 | None | | | | L10V, I13V, M36I, R41K, L63P, I64L | D |
| Neilson (1999) | MB2059 | MB2059 | AF133821 | None | | | | L10V, I13V, I15V, G16X, M36I, R41K, I64V, H69R | D |
| Becker-Pergola (2000) | 151.940 | BPG151-940 | AF216994 | None | | | | T12K, I13V, I15V, L19I, R41K, V77I | D |
| | 230.298 | BPG230-298 | AF216990 | None | | | | I13V, M36I, R41K, I64V | D |
| | 501.045 | BPG501-045 | AF216997 | None | | | | I13V, I15IV, R41K, I64V, H69HY, I72IM | D |
| | 503.083 | BPG503-083 | AF216998 | None | | | | T12P, I13V, K14KR, M36I, R41K, D60DE, L63PS, I64IV | D |
| Holguin (2000) | AHHC18 | HolgHC19 | AF188350 | None | | | | I13V, K14R, I15V, K20I, E35Q, M36I, R41K, R57K, I64M, C67E, H69K, V82I, I85M, L89M | D |
| Nkengasong (2000) | JN_IC0068 | JN_IC0068 | AF216978 | None | | | | I13V, M36I, L38M, R41K, R57K, Q61N, L63P, I64V | D |
| Si-Mohamed (2000) | AS_BIA | AS_BIA | AF199237 | None | | | | I13V, R41K, I64V | D |
| Eshleman (2001) | SE851 | SE851 | AF388165 | None | | | | I13V, K14KR, I15IV, R41K, I64V, V82I | D |
| | SE827 | SE827 | AF388162 | None | | | | I13V, K14KR, R41K, I64V, H69Y | D |
| | SE788 | SE788 | AF388158 | None | | | | I13V, M36V, R41K, I62V, I64V, H69Y | D |
| | SE618 | SE618 | AF388153 | None | | | | I13V, R41K, D60DE, L63P, H69HY, I72IV, V77VI | D |
| | SE602 | SE602 | AF388152 | None | | | | I13V, G16E, R41K, L63H, I72V | D |
| | SE549 | SE549 | AF388149 | None | | | | L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64V | D |
| | SE494 | SE494 | AF388143 | None | | | | I13V, R41K, D60E, L63P, C67S | D |
| | SE414 | SE414 | AF388141 | None | | | | I13V, E35D, M36I, P39Q, R41K, K45R, R57K, L63P, H69K, L89M | D |
| | SE227 | SE227 | AF388139 | None | | | | I13V, M36IL, N37NS, R41K, D60E, I62V, I64V, H69Y | D |
| | SE887 | SE887 | AF388134 | None | | | L89LV | I13V, I15V, M36I, R41K, L63P, I64L | D |
| | SE868 | SE868 | AF388132 | None | | | | I13V, M36I, R41K, I62V, L63AS, I64IV, E65ED, H69Y | D |
| | SE800 | SE800 | AF388128 | None | | | | I13V, R41K, I64V, E65D, H69HY | D |
| | SE782 | SE782 | AF388126 | None | | | | I13V, G16E, M36I, R41K, I64V | D |
| | SE779 | SE779 | AF388125 | None | | | | I13V, L19Q, M36I, R41K, I64V | D |
| | SE765 | SE765 | AF388124 | None | | | | L10I, I13V, K20KR, M36I, R41K, L63Q, I64V, H69Q | D |
| | SE760 | SE760 | AF388123 | None | | | | I13V, I15V, N37NS, R41K, D60E, I64V | D |
| | SE755 | SE755 | AF388122 | None | | | | I13V, K14R, M36I, R41K, I64V | D |
| | SE748 | SE748 | AF388121 | None | | | | T12A, I13V, K14KR, I15V, M36I, R41K, I64V, H69K | D |
| | SE735 | SE735 | AF388119 | None | | | | I13V, M36I, R41K, I64V, H69HY | D |
| | SE723 | SE723 | AF388117 | None | | | | I13V, I15IV, L19LP, M36I, R41K | D |
| | SE638 | SE638 | AF388105 | None | | | | I13V, L33V, R41K, L63Q, I64V | D |
| | SE612 | SE612 | AF388101 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69Q | D |
| | SE607 | SE607 | AF388099 | None | | | | I13V, K20R, M36I, R41K, I64V, I93IL | D |
| | SE578 | SE578 | AF388095 | None | | | | I13V, E35D, M36I, R41K, I62V, I64V, E65D | D |
| | SE483 | SE483 | AF388087 | None | | | | I13V, M36I, R41K, H69Y | D |
| | SE470 | SE470 | AF388084 | None | | | | I13V, L33V, N37S, P39S, R41K, D60E, I64V | D |
| | SE463 | SE463 | AF388083 | None | | | | I13V, K14KR, R41K, I64V, I72V | D |
| | SE459 | SE459 | AF388082 | None | | | | I13V, L19LI, M36I, R41K, I62V, I64V, K70R | D |
| | SE423 | SE423 | AF388077 | None | | | | I13V, R41K, I64IV, H69Y, V82VI | D |
| | SE250 | SE250 | AF388074 | None | | | | I13V, K14R, R41K, I64V, H69Y | D |
| | SE249 | SE249 | AF388073 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, D60E, H69K, L89M | D |
| | SE188 | SE188 | AF388072 | None | | | | I13V, R41K, I64V, H69Y | D |
| | SE43 | SE43 | AF388066 | None | | | | I13V, R41K, L63P, H69CY, I72IT | D |
| | SE33 | SE33 | AF388065 | None | | | I50IF, L76I | I13V, M36I, R41K, L63P, I64V, A71T, I72IV, V77I | D |
| Koulinska (2001) | IK_96TZBF110 | 96TZBF110 | AF289550 | None | | | | T4S, I13V, R41K, H69Y | D |
| Weidle (2001) | PW_UG458 | PW_UG458 | AF358752 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89M | D |
| | PW_UG465 | PW_UG465 | AF358755 | None | | | | I13V, I15V, M36I, R41K, L63Q, I64V, I72V | D |
| | | PW_UG465a | | None | | | | I13V, I15V, M36I, R41K, L63Q, I64V, I72V | D |
| | | PW_UG465b | | None | | | | I13V, I15V, M36I, R41K, L63Q, I64V, I72V | D |
| | PW_UG474 | PW_UG474 | AF358759 | None | | | | L10V, I13V, M36I, R41K, L63X, I64V | D |
| | | PW_UG474a | | None | | | | L10V, I13V, M36I, R41K, L63X, I64V | D |
| Cuevas (2002) | CU67 | CU67 | AF425448 | None | | | | I13V, K20R, M36I, N37D, R41K, K43R, L63P, H69Q | D |
| | CU60 | CU60 | AF425441 | None | | | | I13V, K14R, G16E, K20M, E35D, M36I, R41K, K43R, L63P, H69Q, L89M | D |
| | CU57 | CU57 | AF425438 | None | | | | I13V, L19I, K20I, E35D, M36I, R41K, H69K, V82I, L89M | D |
| | CU45 | CU45 | AF425426 | None | | | | L10I, I13V, K20I, E35D, M36I, R41K, K45R, L63P, H69Q, L89M | D |
| | CU40 | CU40 | AF425421 | None | | | | I13V, K20R, M36I, R41K, K43R, Q61E, L63P, H69Q | D |
| | CU38 | CU38 | AF425419 | None | | | | I13V, R41K, L63P, H69Q, V77I | D |
| Dowling (2002) | NKU3006 | NKU3006 | AF457090 | None | | | | I13V, K20R, M36I, N37D, R41K, I64V, E65D, K70R | D |
| | KSM4001 | KSM4001 | AF457072 | None | | | | I13V, N37S, R41K, L63P, I64L, K70R | D |
| | KER2017 | KER2017 | AF457056 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | D |
| Eshleman (2002) | 123108n | 123108n | AF410208 | None | | | | I13V, R41K, L63P, H69Y, I72V | D |
| | 124661e | 124661e | AF410212 | None | | | | I13V, M36I, R41K, L63P | D |
| | 126083n | 126083n | AF410214 | None | | | | I13V, R41K, R57G, I64V, E65D, I72V | D |
| | 127205r | 127205r | AF410216 | None | | | | I13V, K20KR, M36I, R41K, D60DE, I64V | D |
| | 129425g | 129425g | AF410217 | None | | | T74TP | I13V, K20KR, M36I, N37ND, R41K, Q61QE, I64V | D |
| | 131226r | 131226r | AF410219 | None | | | | I13V, K14R, R41K, L63P, I64L | D |
| | 136288y | 136288y | AF410225 | None | | | | T12TA, I13V, R41K, I64V, H69Y | D |
| | 137554u | 137554u | AF410229 | None | | | | I13V, M36I, R41K, L63T, I64V, E65ED | D |
| | 139339y | 139339y | AF410234 | None | | | | I13V, K14KR, N37ND, R41K, L63P, E65D, K70R, A71AT, I72IT, V77VI | D |
| | 139367i | 139367i | AF410235 | None | | | | I13V, R41K, L63P, I72M, V75I | D |
| | 139934b | 139934b | AF410236 | None | | | | I13V, M36I, N37S, R41K, Q61N, I64V | D |
| | 144240v | 144240v | AF410241 | None | | | | I13V, M36I, R41K, I62IV, L63CHRY, I64V | D |
| | 145350k | 145350k | AF410244 | None | | | | L10I, I13V, R41K, I64V, C67G, H69Y, V77I | D |
| | 147143w | 147143w | AF410247 | None | | | | I13V, M36I, R41RK, L63P, H69HY | D |
| | 147607q | 147607q | AF410249 | None | | | | T12A, I13V, R41K, D60E, L63P, V77VI | D |
| | 148154f | 148154f | AF410250 | None | | | | I13V, K20R, M36I, R41K, I62V, L63P, I64L | D |
| | 150140g | 150140g | AF410254 | None | | | | I13V, R41RK, L63Q, I64V | D |
| Gibb (2002) | DMG88 | 88_w-21 | | None | | | | I13V, K14R, K20M, M36I, R41K, L63H, I64V, I72V | D |
| | DMG90 | 90_w-6 | | None | | | L10LF | I13V, I15IV, E35D, M36I, R41K, I64V, E65D | D |
| | | 90_w-4 | | None | | | | I13V, I15IV, N37D, R41K, D60E, L63LS, I64V, V77I | D |
| Hierholzer (2002) | SU488 | SU488 | AY102484 | None | | | | I13V, I15V, G16E, N37T, P39S, R41K, D60E, L63P, A71T, I93L | D |
| | SU250 | SU250 | AY102504 | None | | | | I13V, G16E, R41K, R57K, D60E, Q61N, L63S, E65D, V77I | D |
| | SU510 | SU510 | AY102487 | None | | | | T12S, I13V, L19I, L33V, N37T, P39S, R41K, L63P, I64V, E65D, H69Y | D |
| | SU049 | SU049 | AY102492 | None | | | | I13V, L33V, N37T, P39S, R41K, D60E, L63P, I64V, H69Y | D |
| | SU245 | SU245 | AY102501 | None | | | | I13V, R41K, I62V, L63P, I64V, H69Y | D |
| | SU480 | SU480 | AY102483 | None | | | | I13V, I15V, E35D, N37D, R41K, D60E | D |
| Koulinska (2002) | TZBFL0086 | TZBFL0086 | AF442566 | None | | | | I13V, I15V, E35D, M36I, R41K | D |
| | TZBFL0088 | TZBFL0088 | AF442570 | None | | | | I13V, K14R, M36I, P39A, R41K, I64V, V77I | D |
| Pandrea (2002) | IP_97CIRMF08 | 97CIRMF08 | AY140611 | None | | | L33I | L10I, I13V, M36I, R41K, Q61N, L63S, I64V, C67Y | D |
| Jorgensen (2003) | JLB_Pat15 | HIM419441 | AJ419441 | None | | | V11VI | I13V, K14KR, I15IV, K20KR, M36I, R41K, I64V | D |
| Maljkovic (2003) | MI_Pat60 | 99SE18070 | AY165221 | None | | | | I13V, R41K, I64V | D |
| | MI_Pat64 | 99SE17094 | AY165212 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| Shafer (2003) | A384_0303 | 0303a | EF548190 | None | | | | I13V, R41K, L63P, I64IV, H69Y, I72IV | D |
| Soares (2003) | BRP2072 | BRP2072 | AF527282 | None | | | | L10I, I13V, G17E, R57K, Q61N, L63T, N98K | D |
| Eshleman (2004) | SE827 | SE827_7d | AY428725 | None | | | | I13V, K14KR, R41K, I64V, H69Y | D |
| | SE602 | SE602_7d | AY428700 | None | | | | I13V, G16E, R41K, L63H | D |
| | SE549 | SE549_7d | AY428693 | None | | | | L10V, T12A, I13V, M36I, R41K, D60E, L63P, I64V | D |
| | SE227 | SE227_7d | AY428680 | None | | | | I13V, M36X, N37NS, R41K, D60E, I62V, I64V, H69Y | D |
| | SE13 | SE13_7d | AY428670 | None | | | | I13V, R41K, L63P, H69CY, I72IT | D |
| | SE868 | SE868p | AY435400 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, H69Y | D |
| | | SE868_7d | AY428731 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, H69Y | D |
| | SE779 | SE779_7d | AY428722 | None | | | | I13V, L19Q, M36I, R41K, I64V | D |
| | SE748 | SE748_7d | AY428716 | None | | | | T12A, I13V, I15V, M36I, R41K, I64V, H69K | D |
| | SE735 | SE735_7d | AY428713 | None | | | | I13V, K20KR, M36I, R41K, I64V, H69Y | D |
| | SE638 | SE638p | AY435395 | None | | | | I13V, L33V, R41K, L63Q, I64V | D |
| | | SE638_7d | AY428708 | None | | | | I13V, L33V, R41K, L63Q, I64V, T96P | D |
| | SE612 | SE612_7d | AY428704 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69Q | D |
| | SE490 | SE490p | AY435392 | None | | | | I13V, I15V, E35D, N37ND, R41K, R57K, I64V, E65ED, I72V | D |
| | SE463 | SE463_7d | AY428688 | None | | | | I13V, K14KR, I15IV, R41K, I64V, I72V | D |
| | SE188 | SE188_7d | AY428679 | None | | | | I13V, R41K, I64V, H69Y | D |
| Eshleman (2004) | ESH_Pat4 | ESH464 | AY435275 | None | | | | I13V, M36I, R41K, L63X, I64V | D |
| | ESH_Pat8 | ESH682 | AY435344 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | ESH_Pat11 | ESH683 | AY435328 | None | | | | I13V, E35D, R41K, D60E, I64V, H69HY | D |
| | ESH_Pat17 | ESH182 | AY435242 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, L63S, H69K, I72IT, L89M | D |
| | ESH_Pat20 | ESH544 | AY435305 | None | | | | I13V, N37S, R41K | D |
| | ESH_Pat23 | ESH546 | AY435306 | None | | | | I13V, R41K, I64V | D |
| | ESH_Pat28 | ESH763 | AY435357 | None | | | | I13V, L19LI, N37S, R41N, D60E, I64V | D |
| | ESH_Pat32 | ESH695 | AY435330 | None | | | | T12TA, I13V, K14KR, R41K, L63P, H69Y | D |
| | ESH_Pat40 | ESH620 | AY435316 | None | | | | I13V, L19IV, M36I, R41K, D60DE, I62IV, I64IV | D |
| | ESH_Pat47 | ESH626 | AY435323 | None | | | | I13V, L24LF, M36I, R41K, R57K, L63P, C67Y | D |
| | ESH_Pat53 | ESH484 | AY435284 | None | | | | I13V, M36I, R41K, I64V | D |
| | ESH_Pat62 | ESH849 | AY435375 | None | | | | I13V, L19I, R41K, H69Y | D |
| | ESH_Pat64 | ESH410 | AY435266 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, L63C, I64V | D |
| | ESH_Pat67 | ESH418 | AY425352 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | ESH_Pat70 | ESH634 | AY435326 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M | D |
| | ESH_Pat71 | ESH61 | AY435237 | None | | | | I13V, R41K, H69HY, K70KR, V82I | D |
| | ESH_Pat72 | ESH708 | AY435341 | None | | | | I13V, E35D, N37D, R41K, R57RK, D60E, L63P, I64V, K70KR, I72L | D |
| | ESH_Pat75 | ESH66 | AY435235 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | D |
| Eshleman (2004) | | SE66_7d | AY428674 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | D |
| Eshleman (2004) | ESH_Pat78 | ESH780 | AY435360 | None | | | | I13V, M36MI, R41K, L63P, I64V | D |
| | ESH_Pat79 | ESH853 | AY435372 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | ESH_Pat81 | ESH499 | AY435297 | None | | | | I13V, M36I, R41K, Q61QH, I64V | D |
| | ESH_Pat82 | ESH783 | AY435367 | None | | | | L10I, I13V, R41K, L63V, H69Q, A71T, V77VI | D |
| | ESH_Pat83 | ESH857 | AY435383 | None | | | | L10GV, I13V, M36I, R41K, L63S, I64V | D |
| | ESH_Pat84 | ESH784 | AY435359 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| Eshleman (2004) | | SE784_7d | AY428720 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| Eshleman (2004) | ESH_Pat86 | ESH207 | AY435254 | None | | | | I13V, E35D, M36I, R41K, K45KR, H69K, L89M | D |
| | ESH_Pat90 | ESH428 | AY435277 | None | | | | I13V, K20KR, E35D, M36I, R41K, K45R, R57K, I64L, H69K, L89M | D |
| | ESH_Pat91 | ESH642 | AY435322 | None | | | | I13V, R41K, I64V, V77I | D |
| | ESH_Pat92 | ESH717 | AY435349 | None | | | | I13V, I15IV, N37S, R41K, V77VI | D |
| | ESH_Pat96 | ESH647 | AY435325 | None | | | | L10V, I13V, K20R, M36I, R41K, I64V, E65D, I72V | D |
| | ESH_Pat97 | ESH860 | AY435388 | None | | | | I13V, M36I, R41K, I64V | D |
| | ESH_Pat104 | ESH218 | AY435246 | None | | | | I13V, K20KR, M36L, R41K, K43KR, L63P, I64V, K70KR, I72V, V77I | D |
| | ESH_Pat115 | ESH729 | AY435342 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M | D |
| | ESH_Pat118 | ESH86 | AY435239 | None | | | | I13V, G16E, E35ED, M36IL, N37NK, R41K, Q61N, I64V, E65D, I72T | D |
| | ESH_Pat119 | ESH586 | AY435313 | None | | | | I13V, M36I, R41K, K45KR, L63PQ, I64V | D |
| | ESH_Pat122 | ESH874 | AY435387 | None | | | | I13V, R41K, L63F, I64IV, K70R | D |
| | ESH_Pat126 | ESH1 | AY435220 | None | | | | I13V, G16E, E35D, R41K, L63Q, I64V, K70R, V77I | D |
| Eshleman (2004) | | SE1_7d | AY428667 | None | | | | I13V, G16E, E35D, R41K, L63Q, I64V, K70R, V77I | D |
| Eshleman (2004) | ESH_Pat128 | ESH10 | AY435222 | None | | | | I13V, K14R, M36MI, R41K, D60E, I64V | D |
| Eshleman (2004) | | SE10_7d | AY428668 | None | | | | I13V, K14R, M36MI, R41K, D60E, I64V | D |
| Eshleman (2004) | ESH_Pat131 | ESH512 | AY425351 | None | | | | I13V, Q18H, M36I, N37NS, R41K, L63C, I64V | D |
| Eshleman (2004) | | SE512_7d | AY428689 | None | | | | I13V, Q18H, M36I, N37NS, R41K, L63C, I64V | D |
| Eshleman (2004) | ESH_Pat134 | ESH158 | AY435243 | None | | | | I13V, M36I, R41K, I64V, E65D | D |
| | ESH_Pat137 | ESH515 | AY425350 | None | | | | I13V, M36MI, R41K, L63Q, I64V, E65D | D |
| | ESH_Pat138 | ESH9 | AY435221 | None | | | | I13V, M36I, N37ND, R41K, D60E, L63P, I64V, G68GE | D |
| Eshleman (2004) | | SE9_7d | AY428669 | None | | | | I13V, M36I, N37ND, R41K, D60E, L63P, I64V | D |
| Eshleman (2004) | ESH_Pat139 | ESH517 | AY435295 | None | | | | T12P, I13V, R41K, L63P, I64V, I72M, V77I | D |
| | ESH_Pat143 | ESH519 | AY435299 | None | | | | I13V, K20R, M36L, N37A, R41K, Q61H, I64V | D |
| | ESH_Pat145 | ESH806 | AY435377 | None | | | | I13V, R41K, I62V, I64V, H69Y, I72T | D |
| | ESH_Pat152 | ESH98 | AY435259 | None | | | | I13V, L33V, N37S, P39S, R41K, I64V | D |
| | ESH_Pat162 | ESH525 | AY435294 | None | | | | I13V, L33V, M36I, R57K, L63LP, I64V, H69Y, I72V | D |
| | ESH_Pat164 | ESH740 | AY435350 | None | | | | I13V, G16GE, M36I, R41K, I64V, I72T | D |
| Eshleman (2004) | | SE740_7d | AY428714 | None | | | | I13V, G16GE, M36I, R41K, I64V, I72T, T96TP | D |
| Eshleman (2004) | ESH_Pat165 | ESH815 | AY435362 | None | | | | I13V, M36I, P39AS, R41K, D60E, I62V, L63P, I64V | D |
| | ESH_Pat177 | ESH531 | AY435308 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, L63S, H69K, K70KR, L89M | D |
| Eshleman (2004) | 99_237 | 99_237 | AY444270 | None | | | | I13V, K20R, M36I, R41K, I62IV, I64V | D |
| | 128_318 | 128_318 | AY444262 | None | | | | I13V, M36I, R41K, I64V | D |
| | 151_940 | 151_940 | AY444263 | None | | | | T12K, I13V, I15V, L19I, R41K, V77I | D |
| | 503_083 | 503_083 | AY444268 | None | | | | T12TP, I13V, K14KR, M36I, R41K, R57RK, D60DE, L63PS, I64IV, E65ED | D |
| | 2387801 | 2387801 | AY444265 | None | | | | I13V, L19I, M36I, R41K, Q61N | D |
| Fang (2004) | ML415_2_1997 | 415_2_1997 | AY322189 | None | | | | I13V, R41K, I64V, V77I | D |
| Gulick (2004) | RG224 | RG224w0 | | None | | | | L10V, T12I, I13V, N37D, L63P, I93L | D |
| Kijak (2004) | UGA08483 | 99UGA08483 | AY304496 | None | | | | I13V, Q18H, N37S, R41K, I64V | D |
| Servais (2004) | SJ_Pat4 | SJKLM013 | AJ412940 | None | | | | I13V, M36I, R41K, L63LP, I64IV, H69Y | D |
| Yang (2004) | 97KE004 | 97KE004 | AY492752 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89M | D |
| | 97KE140 | 97KE140 | AY492758 | None | | | | I13V, Q18H, M36I, R41K, I64V, H69Y | D |
| | 98KE176 | 98KE176 | AY492760 | None | | | | I13V, K14R, L33V, R41K, I64V, H69Q | D |
| | 98KE324 | 98KE324 | AY492762 | None | | | | I13V, I15V, P39S, R41K, I64V | D |
| | 97KE047 | 97KE047 | AY492768 | None | | | | Q7R, R8L, I13V, K14R, T31P, R41K, L63P | D |
| | 97KE491 | 97KE491 | AY492770 | None | | | | I13V, R41K, L63H, I64V, K70R | D |
| | 99KE504 | 99KE504 | AY492771 | None | | | | I13V, M36I, R41K, I64V | D |
| | 00KE558 | 00KE558 | AY492775 | None | | | | R8G, P9G, L10P, I13V, M36I, R41K, L63P, I64L, H69Q, I72V | D |
| | 99KE577 | 99KE577 | AY492779 | None | | | | R8L, I13V, R41K, L63P, K70R | D |
| | 97KE100 | 97KE100 | AY492784 | None | | | | I13V, R41K, D60E, I64V | D |
| | 98KE234 | 98KE234 | AY492786 | None | | | | I13V, N37S, R41K, I64V | D |
| | 99KE593 | 99KE593 | AY492788 | None | | | | I13V, R41K, L63P, I64V | D |
| | 99KE588 | 99KE588 | AY492789 | None | | | L33I | I13V, L19I, E35D, N37S, R41K, L63Q, I64V, E65D, H69Y | D |
| Bellocchi (2005) | 779 | MT000779 | GU199581 | None | | | | I13V, M36I, R41K, L63E, I64IM, H69Y | D |
| K'Aluoch (2005) | OK_TC023304 | TC023304 | DQ079828 | None | | | | I13V, L33V, P39S, R41K, R57K, D60E, I64V | D |
| | OK_TC021304 | TC021304 | DQ079836 | None | | | Q58E | I13V, M36I, R41K, L63P | D |
| | OK_TC021104 | TC021104 | DQ079838 | None | | | | T12P, I13V, L19I, K20R, M36I, R41RK, K45KN, Q61E, I64IV, C67W, H69Y, I72V, V77VI | D |
| | OK_TC020804 | TC020804 | DQ079839 | None | | | | I13V, R41K, D60E, I64V, V77I | D |
| | OK_TC011103 | TC011103 | DQ079842 | None | | | | I13V, M36I, R41K, K45R, I64V | D |
| | OK_TC011003 | TC011003 | DQ079843 | None | | | | I13V, E35D, M36I, N37D, I64V | D |
| | OK_TC010103 | TC010103 | DQ079845 | None | | | | I13V, L33LV, R41K, D60E, Q61E, L63P | D |
| | OK_TC008803 | TC008803 | DQ079849 | None | | | | L10LI, I13V, Q18E, M36I, R41K, L63Q, I64V | D |
| | OK_TC007703 | TC007703 | DQ079854 | None | | | | L10IV, I13V, M36I, P39S, R41K, I62V, L63P, I64V | D |
| | OK_TC007103 | TC007103 | DQ079855 | None | | | | I13V, K20R, M36I, R41K, R57K, L63P, I64V, H69Y, I72V | D |
| | OK_TC006403 | TC006403 | DQ079857 | None | | | | I13V, K14R, I15V, M36I, R41K, I64V | D |
| | OK_TC005903 | TC005903 | DQ079858 | None | | | L33I | I13V, K20R, N37Q, R41K, I64V | D |
| Non-B Workgroup (2005) | UK4834 | UK4834 | | None | | | | I13V, K20R, M36I, R41K, L63P, I64V, H69Y, I72V, V77I | D |
| | UK4684 | UK4684 | AY901208 | None | | | | L10V, I13V, K20R, M36I, N37D, R41K, D60E, I64V | D |
| | UK4902 | UK4902 | AY901225 | None | | | | I13V, K14KR, R41K, D60E, L63P, H69N, V77I | D |
| | TK5003 | TK5003 | | None | | | | I13V, E35D, M36I, R41K, I64V, K70R | D |
| Saad (2005) | SM_01YE386 | 01YE386 | AY795903 | None | | | | L10V, I13V, K14M, R41K, I64V | D |
| Tovanabutra (2005) | 99US_MSC4068 | 99US_4068 | AY444799 | None | | | | I13V, L33V, M36I, R41K, I64V, I72V | D |
| Weber (2005) | F86075 | F86075 | AY677412 | None | | | | I13V, R41K, L63P | D |
| | 01F8686 | 01F8686 | AY677486 | None | | | | I13V, K14R, I15V, M36I, R41K, I62V, L63P, I64V | D |
| Eshleman (2006) | SE790 | 790-pre | DQ230332 | None | | | | I13V, M36IV, N37ND, R41K, I62V, I64V, H69Y | D |
| Koizumi (2006) | YK_04CM063 | YK_04CM063 | DQ461854 | None | | | | I13V, K14R, K20I, M36I, R41K, H69K, L89M | D |
| Ojesina (2006) | AIO_DDJ134 | AIO_DDJ134 | DQ273935 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, L63I, H69K, L89M | D |
| Saad (2006) | MDS_01UAKV176 | 01UAKV176 | DQ055205 | None | | | | T12P, I13V, E35D, R41K, L63P, I64V | D |
| | MDS_02UAKV185 | 02UAKV185 | DQ055311 | None | | | | T12P, I13V, E35D, R41K, L63P, I64V | D |
| Vidal (2006) | NV_KIST132 | 02.KIST132 | AM041030 | None | | | | I13V, K20R, M36I, R41K, I62V, L63P, C67Y, K70R | D |
| | NV_KP063 | 02.KP063 | AM041001 | None | | | | T12P, I13V, G16E, R41K, Q61N, I64L, I72T, V77I | D |
| | NV_KSFE141 | 02.KSFE141 | AM040994 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | NV_KSS006 | 02.KSS006 | AM041047 | None | | | | T4S, I13V, L19I, K20R, E35D, N37D, D60E, L63P, I72V, V77I | D |
| Visawapoka (2006) | KNH1254 | KNH1254 | AY945737 | None | | | | I13V, I15V, R41K | D |
| Baker (2007) | 1056KP | 01-1056KP | AY803469 | None | | | L33I | I13V, I64V | D |
| | 9454KI | 03-9454KI | AY803475 | None | | | | L10V, I13V, M36I, R41K, I64V, E65D | D |
| | 0079BS | 04-0079BS | AY803478 | None | | | | I13V, M36I, R41K, I64V | D |
| | 0631KS | 04-0631KS | AY803482 | None | | | | I13V, R41K, I64V | D |
| | 7289KB | 03-7289KB | AY803484 | None | | | | I13V, R41K, L63LP, I64V, H69Y, I72V | D |
| | TC0257 | TC025704 | AY803487 | None | | | | T12S, I13V, K14R, I15IV, M36I, R41K, L63P, I72V | D |
| | P0048 | P0048-230205 | EF186136 | None | | | | I13V, R41K, I64V, I72V, V77I | D |
| | P0062 | P0062-070305 | EF186139 | None | | | | I13V, M36I, R41K, L63P, I64IV | D |
| | P0086 | P0086-230305 | EF186141 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, H69Y, N98K | D |
| | P0247 | P0247-080805 | EF186148 | None | | | | I13V, N37S, R41K, I64V, V77I | D |
| | P0285 | P0285-070905 | EF186149 | None | | | | I13V, K20R, M36I, R41K, L63Q, I64V | D |
| | A1014 | MBA1014-090805 | EF186202 | None | | | | T12Q, I13V, M36I, R41K, I62V, L63S, I64V | D |
| | A1030 | MBA1030-240805 | EF186208 | None | | | | T12A, I13V, I15V, R41K, D60E, L63LR, I64V, V77I | D |
| | A1031 | MBA1031-240805 | EF186209 | None | | | | I13V, N37AT, R41K, Q61N, L63S, I64V, E65D, H69Y, V77I | D |
| | A1040 | MBA1040-190905 | EF186213 | None | | | | I13V, K20R, M36I, P39T, R41K, L63P, A71V, I93L | D |
| | A1043 | MBA1043-200905 | EF186214 | None | | | I47IM | I13V, K20R, M36I, R41K, I64V, E65ED, I72IV | D |
| | A1044 | MBA1044-200905 | EF186215 | None | | | | I13V, K20R, M36I, R41K, I64V, E65D | D |
| | A1050 | MBA1050-171005 | EF186216 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | A1051 | MBA1051-201005 | EF186217 | None | | | | I13V, R41K, I62V, L63A, H69Y | D |
| | A1055 | MBA1055-261005 | EF186219 | None | | | | I13V, R41K, L63P, I64V, H69Y, I72E, V77I | D |
| | A1059 | MBA1059-081105 | EF186220 | None | | | | I13V, L33V, M36I, N37T, P39S, R41K, L63Q, I64V, I72V, V82VI | D |
| | AR006 | MBAR006-120405 | EF186222 | None | | | | I13V, R41K, D60E, L63P, I64V | D |
| | AR012 | MBAR012-140405 | EF186224 | None | | | | I13V, L33V, R41K, L63A | D |
| Brumme (2007) | 1432 | PRRT_1432 | EF368742 | None | | | | I13V, G16A, E21G, E35D, M36I, R41K, R57K, H69K, L89M | D |
| Church (2007) | 001-106667R | 001 | EF611990 | None | | | | I13V, G16E, E35D, R41K, L63Q, I64V, K70R, V77I | D |
| | 009-107995N | 009 | EF611992 | None | | | | I13V, M36I, R41K, D60E, L63P, I64V, V77VI | D |
| | 043-110304r | 043 | EF612000 | None | | | | I13V, R41K, L63P, H69CY, I72IT | D |
| | 061-111500X | 061 | EF612008 | None | | | | I13V, R41K, H69HY, K70KR, V82I | D |
| | 086-114416P | 086 | EF612009 | None | | | | I13V, G16E, E35ED, M36IL, N37NK, R41K, Q61N, I64V, E65D, I72T | D |
| | 098-116868B | 098 | EF612011 | None | | | | I13V, L33V, N37S, P39S, R41K, I64V | D |
| | 158-117946J | 158 | EF612012 | None | | | | I13V, M36I, R41K, I64V, E65D | D |
| | 170-118342Q | 170 | EF612013 | None | | | | I13V, K20KR, M36I, R41K, L63LFPS, I64V | D |
| | 218-118871V | 218 | EF612016 | None | | | | I13V, K20KR, M36L, R41K, K43KR, L63P, I64V, K70KR, I72V, V77I | D |
| | 250-119815m | 250 | EF612018 | None | | | | I13V, K14R, R41K, I64V, H69Y | D |
| | 418-124277n | 418 | EF612023 | None | | | | I13V, K20R, M36I, R41K, I64V, K70KR | D |
| | 452-125040D | 452 | EF612032 | None | | | | I13V, M36L, N37NS, R41K, I64V, H69HY | D |
| | 459-126676y | 459 | EF612034 | None | | | | I13V, L19LI, M36I, R41K, I62V, I64V, K70R | D |
| | 464-126829V | 464 | EF612035 | None | | | | I13V, M36I, R41K, L63LH, I64V | D |
| | 470-126987m | 470 | EF612037 | None | | | | I13V, L33V, N37S, P39S, R41K, D60E, I64V | D |
| | 483-125847p | 483 | EF612040 | None | | | | I13V, M36I, R41K, H69Y | D |
| | 484-126531U | 484 | EF612041 | None | | | | I13V, M36I, R41K, I64V | D |
| | 494-127521w | 494 | EF612044 | None | | | | I13V, G16A, R41K, D60E, L63P, C67S | D |
| | 497-126960M | 497 | EF612046 | None | | | | I13V, K14KR, E35D, M36I, R41K, E65ED, H69K, L89M | D |
| | 499-126989D | 499 | EF612047 | None | | | | I13V, M36I, R41K, I64V | D |
| | 509-128126K | 509 | EF612050 | None | | | | I13V, L33V, R41K | D |
| | 512-128108h | 512 | EF612051 | None | | | | I13V, Q18H, M36I, R41K, L63C, I64V | D |
| | 515-128487Q | 515 | EF612053 | None | | | | I13V, N37NT, R41K, L63Q, I64V, E65D | D |
| | 517-129070G | 517 | EF612054 | None | | | | T12P, I13V, R41K, L63P, I64V, I72M, V77I | D |
| | 519-128295D | 519 | EF612055 | None | | | | I13V, K20R, M36L, N37A, R41K, Q61H, I64V | D |
| | 525-128845B | 525 | EF612057 | None | | | | I13V, L33V, M36I, R57K, I64V, H69Y, I72V | D |
| | 537-129767s | 537 | EF612059 | None | | | | I13V, M36I, R41K, I64V, H69Y, I72IV | D |
| | 544-129978L | 544 | EF612061 | None | | | | I13V, N37S, R41K | D |
| | 578-131089x | 578 | EF612071 | None | | | | I13V, E35D, M36I, R41K, I62V, I64V, E65D | D |
| | 602-132594b | 602 | EF612078 | None | | | | I13V, G16E, R41K, L63H | D |
| | 607-132924v | 607 | EF612079 | None | | | | I13V, M36I, R41K, K45KR, L63PQ, I64V | D |
| | 612-132691o | 612 | EF612081 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69HQ | D |
| | 618-133703t | 618 | EF612083 | None | | | | I13V, R41K, D60DE, L63P, C67S, H69HY, I72IV, V77I | D |
| | 620-132424Y | 620 | EF612084 | None | | | | I13V, L19IV, K20KR, M36I, R41K, D60DE, I62IV, I64IV | D |
| | 626-134055S | 626 | EF612088 | None | | | | I13V, M36I, R41K, R57K, L63P, C67Y | D |
| | 642-132887E | 642 | EF612091 | None | | | | I13V, R41K, I64V, V77I | D |
| | 647-135041K | 647 | EF612093 | None | | | | L10V, I13V, K20R, M36I, R41K, L63LIRS, I64V, E65D, I72V | D |
| | 682-135474Y | 682 | EF612105 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | 683-134300Q | 683 | EF612106 | None | | | | I13V, E35D, R41K, D60E, I64V, H69HY | D |
| | 695-137452V | 695 | EF612110 | None | | | | T12TA, I13V, K14KR, R41K, L63P, H69Y | D |
| | 708-136157U | 708 | EF612118 | None | | | | I13V, E35D, N37D, R41K, R57RK, D60E, L63P, I64V, K70KR, I72L | D |
| | 717-138777R | 717 | EF612119 | None | | | | I13V, N37S, R41K, V77I | D |
| | 735-138266a | 735 | EF612124 | None | | | | I13V, K20KR, M36I, R41K, I64V, H69HY | D |
| | 740-140258N | 740 | EF612126 | None | | | | I13V, G16GE, M36I, R41K, I64V, I72T | D |
| | 748-140764t | 748 | EF612130 | None | | | | T12A, I13V, I15V, M36I, R41K, I64V, H69K | D |
| | 755-140259a | 755 | EF612133 | None | | | | I13V, K14R, M36I, R41K, I64V | D |
| | 763-141319X | 763 | EF612136 | None | | | | I13V, L19I, N37S, R41N, D60E, I64V | D |
| | 765-140409O | 765 | EF612137 | None | | | | L10I, I13V, K20KR, M36I, R41K, L63Q, I64V, H69Q | D |
| | 770-141405W | 770 | EF612139 | None | | | | T12TA, I13V, K14KR, G16GE, L33V, M36I, R41K, D60DE, I62V, L63C, I64V | D |
| | 779-142647t | 779 | EF612142 | None | | | | I13V, L19Q, M36I, R41K, I64V | D |
| | 780-141912B | 780 | EF612143 | None | | | | I13V, M36MI, R41K, L63P, I64V | D |
| | 783-140837P | 783 | EF612144 | None | | | | L10I, I13V, R41K, L63IV, H69Q, A71T, V77VI | D |
| | 784-140964H | 784 | EF612145 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | 788-142516h | 788 | EF612146 | None | | | | I13V, M36IV, N37ND, R41K, I62V, I64V, H69Y | D |
| | 796-141191V | 796 | EF612148 | None | | | | I13V, K14KR, R41K, K45R, D60E, L63LP, I64V, H69HY, V77VI | D |
| | 804-145242E | 804 | EF612152 | None | | | | I13V, R41K, L63P, I64V | D |
| | 806-142754P | 806 | EF612154 | None | | | | I13V, R41K, I62V, I64V, H69Y, I72T | D |
| | 815-145489E | 815 | EF612157 | None | | | | I13V, M36I, P39A, R41K, D60E, I62V, L63P, I64V | D |
| | 849-144966E | 849 | EF612167 | None | | | | I13V, L19I, R41K, H69Y | D |
| | 851-146773u | 851 | EF612169 | None | | | | T12TA, I13V, K14KR, R41K, I64V, H69HY, V82I | D |
| | 853-146278M | 853 | EF612170 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | 857-146456T | 857 | EF612171 | None | | | | L10V, I13V, M36I, R41K, L63S, I64V | D |
| | 860-147276P | 860 | EF612172 | None | | | | I13V, M36I, R41K, I62IV, I64V | D |
| | 887-148290B | 887 | EF612182 | None | | | L89LV | I13V, I15V, M36I, R41K, L63P, I64L | D |
| | 141315i | 141315i | EF612187 | None | | | | I13V, G16E, M36I, R41K, I64V | D |
| Galluzzo (2007) | M22490 | UG_M22490 | JQ220069 | None | | | | I13V, E35D, M36I, R41K, L63Q, I64V, K70R | D |
| | M22860 | UG_M22860 | JQ220075 | None | | | | T12TA, I13V, K14KR, I15LV, L19I, N37NHRS, R41K, I64V, H69Y, V77I | D |
| | M22600 | UG_M22600 | JQ220081 | None | | | | I13V, R41K, I64V | D |
| | M22500 | UG_M22500 | JQ220083 | None | | | | I13V, I15V, G16E, R41K, D60E, I64V | D |
| | M22900 | UG_M22900 | JQ220085 | None | | | | I13V, E35D, M36I, R41K, L63P, I64L, F99FL | D |
| | M22700 | UG_M22700 | JQ220091 | None | | | | I13V, M36I, R41K, D60DE, L63LH, I64V | D |
| | M22720 | UG_M22720 | JQ220093 | None | | | | I13V, M36I, R41K, L63Q, I64V | D |
| | M22840 | UG_M22840 | JQ220097 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, I72V | D |
| | M20230 | UG_M20230 | JQ220099 | None | | | | I13V, G16E, N37D, R41K, I64V, E65D, I72IV, V77I | D |
| | M20340 | UG_M20340 | JQ220105 | None | | | | I13V, R41K, L63Q, I64V, V77I | D |
| | M20490 | UG_M20490 | JQ220111 | None | | | | I13V, L33V, M36L, R41K, I62V, L63S, I64V, E65D | D |
| | M20610 | UG_M20610 | JQ220115 | None | | | L33LF | W6G, I13V, K20R, E35ED, M36IL, N37H, R41K, I62V, L63Q, I64V, H69Q | D |
| | M20810 | UG_M20810 | JQ220125 | None | | | | L10V, I13V, I15V, M36I, R41K, I64V | D |
| | M20830 | UG_M20830 | JQ220127 | None | | | | I13V, L33LV, M36I, R41K, R57RK, I64V, E65D | D |
| | M21430 | UG_M21430 | JQ220141 | None | | | L33LI | I13V, G17D, R41K, L63P, H69Y | D |
| | M22620 | UG_M22620 | JQ220145 | None | | | | I13V, N37NS, R41K, L63P, I64V, H69Y | D |
| Gatanaga (2007) | C04-5555-6386-1 | C04-5555-6386-1 | AB640462 | None | | | | I13V, I15IV, G16GE, M36I, N37ND, R41K, L63T, I64V, E65D, I72V | D |
| Razafindratsimandresy (2007) | 15 | 15HIV-SEY | EF143507 | None | | | | I13V, K14R, I15IV, R41K, I64V | D |
| Vidal (2007) | U0106 | U0106 | AM260218 | None | | | | I13V, N37T, R41K, L63P, K70R | D |
| | U1916 | 02BU.U1916 | AM260230 | None | | | | I13V, G17E, N37H, R41K, Q61N, I64V, H69Y, I72T | D |
| | U1929 | 02BU.U1929 | AM260231 | None | | | | I13V, R41K, L63P, H69K, A71T, V77I | D |
| von Wyl (2007) | 80 | 1797997 | EF449958 | None | | | | T12A, I13V, L19I, E35D, M36I, R41K, Q61N, L63S, I72T | D |
| Church (2008) | 330957-Y | 330957-Y | EU380721 | None | | | | T12P, I13V, L33V, R41K, I64V, I72L | D |
| | 361159H | 361159H | EU380728 | None | | | | I13V, I15V, M36I, R41K, I64V, H69Y, T96TP | D |
| | 368341X | 368341X | EU380736 | None | | | | I13V, K14R, I15V, R41K, L63Q, I64V, V82I | D |
| | 370581-G | 370581-G | EU380739 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | 372195-P | 372195-P | EU380740 | None | | | | I13V, R41K, I64V, E65D, V77I | D |
| | 389271-L | 389271-L | EU380745 | None | | | L33I | I13V, M36T, R41K, D60E, L63V, I64V, E65D | D |
| | 391100H | 391100H | EU380747 | None | | | | I13V, K20M, E35D, M36I, R41K, I64V, H69Q | D |
| | 393395X | 393395X | EU380748 | None | | | | I13V, R41K, L63F, E65D, V77I | D |
| | 402787T | 402787T | EU380752 | None | | | | I13V, G16E, M36I, R41K, L63C, I64V, I72T | D |
| | 414210P | 414210P | EU380758 | None | | | | I13V, E35D, R41K, K43R, L63P, I64V, H69Y | D |
| | 428544C | 428544C | EU380761 | None | | | L33F | I13V, I15L, L19I, P39Q, R41K, L63T, E65D, I72T, V77I | D |
| | 461597R | 461597R | EU380765 | None | | | | I13V, R41K, R57K, L63P, I64V, H69Y, V77I | D |
| | 476731T | 476731T | EU380768 | None | | | | I13V, N37S, R41K, I64V, H69Y | D |
| Delgado (2008) | GH_046 | GH_046 | EU177919 | None | | | | T12TA, I13V, K20I, M36I, R41K, Q61N, L63N, I64IM | D |
| Holguin (2008) | SP17-340928 | SP17-340928 | EU255320 | None | | | | L10V, I13V, K14R, R41K, R57K, L63P, I64V | D |
| Ibe (2008) | 97 | 97 | AB356160 | None | | | | I13V, K14R, R41K, I64V, V77I | D |
| | 148 | 148 | AB356197 | None | | | | L10I, I13V, M36IL, N37D, R41I, R57RK, D60E, L63P, I64V, K70R | D |
| | 175 | 175 | AB356218 | None | | | | I13V, K14KR, R41K, I64V, V77I | D |
| Land (2008) | ML1076 | ML1076 | EU110086 | None | | | | I13V, G16E, M36I, R41K, I72V | D |
| | ML1956 | ML1956 | EU110089 | None | | | | L10I, I13V, I15V, M36I, R41K, L63T, H69Q | D |
| | ML2000 | ML2000 | EU110093 | None | | | | I13V, R41K, I64V | D |
| Ndembi (2008) | CMYD-56 | 04CMYD-56 | DQ990421 | None | | | | L10V, I13V, G17D, K20R, E35D, M36I, R41K, L63T, H69Q | D |
| Ndembi (2008) | IAEAM009 | IAEAM009 | EU306748 | None | | | | L10V, I13V, G16E, M36I, P39L, R41K, I62V, L63S, I64V, H69Y, I72V | D |
| | IAEM010 | IAEM010 | EU306749 | None | | | | I13V, M36I, R41K, L63P | D |
| | IAEM011 | IAEM011 | EU306750 | None | | | | I13V, L19I, M36I, N37D, R41K, D60G, I62V, L63P, I64V, C67S, K70R | D |
| | IAEAM021 | IAEAM021 | EU306758 | None | | | | I13V, N37S, R41K, D60E, L63P, I64V, K70T, V77I | D |
| | IAEM026 | IAEM026 | EU306760 | None | | | | I13V, I15V, Q18E, R41K, Y59H, L63V, I64V | D |
| | IAEM030 | IAEM030 | EU306762 | None | | | | I13V, E35D, M36I, N37T, R41K, L63P | D |
| | IAEM034 | IAEM034 | EU306765 | None | | | | L10V, I13V, R41K, R57K, I64V, H69I | D |
| | IAEM035 | IAEM035 | EU306766 | None | | | | I13V, K20R, M36I, R41K, D60E, Q61E, I62V, I64V, V75I | D |
| | IAEM036 | IAEM036 | EU306767 | None | | | | I13V, M36I, R41K, L63S, I64V | D |
| | IAEM042 | IAEM042 | EU306771 | None | | | | I13V, N37S, R41K, H69Y, V77I | D |
| | IAEM047 | IAEM047 | EU306774 | None | | | | I13V, M36I, R41K, I64V, H69Y, K70KR | D |
| | IAEM048 | IAEM048 | EU306775 | None | | | | I13V, K14R, M36I, R41K, I64V, K70R | D |
| | IAEM057 | IAEM057 | EU306780 | None | | | | I13V, L33V, R41K, L63P, I64M | D |
| | IAEM066 | IAEM066 | EU306785 | None | | | | I13V, K20R, M36I, N37S, R41K, R57K, L63Q, I64V, E65D | D |
| | IAEM068 | IAEM068 | EU306787 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | IAEM070 | IAEM070 | EU306789 | None | | | | I13V, G16E, M36I, N37D, L63A, I64V, E65D, K70R, I72V | D |
| | IAEM071 | IAEM071 | EU306790 | None | | | | I13V, G16GE, M36I, N37D, L63A, I64V, E65D, K70R, I72V | D |
| | IAEM074 | IAEM074 | EU306791 | None | | | | I13V, K20R, L33V, R41K, L63S, I64V, E65D | D |
| Nyombi (2008) | TBK008 | TBK008 | EU251720 | None | | | | I13V, M36I, R41K, I64V | D |
| | TBK014 | TBK014 | EU251723 | None | | | L33F | I13V, P39L, R41K, L63T, I64V, H69Q | D |
| | TBK022 | TBK022 | EU251728 | None | | | | L10I, I13V, M36I, R41K, L63R, I64V, C67G, K70E, I72V | D |
| | TBK025 | TBK025 | EU251731 | None | | | L33F | I13V, P39L, R41K, L63T, I64V, H69Q, V77I | D |
| | TBK042 | TBK042 | EU251740 | None | | | | I13V, N37S, R41K, I64V | D |
| | TBK061 | TBK061 | EU251752 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | TBK066 | TBK066 | EU251755 | None | | | | I13V, I15V, R41K, I64V, H69Y, I72M | D |
| | TBK072 | TBK072 | EU251759 | None | | | | I13V, M36I, R41K, I64V, I72V | D |
| | TBK074 | TBK074 | EU251761 | None | | | | T12A, I13V, K14R, E35D, M36I, R41K, R57K, D60E, I62V, L63P, I64V, H69Y, I72V | D |
| | TBK078 | TBK078 | EU251765 | None | | | | I13V, M36I, R41K, I64V, H69K | D |
| | TBK080 | TBK080 | EU251767 | None | | | | I13V, K14KR, I15V, G16E, K20M, P39S, G40K, I62IV, L63LF, I64V, V82I | D |
| | TBK085 | TBK085 | EU251768 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | TBK087 | TBK087 | EU251770 | None | | | | I13V, M36I, R41K, Q61D, I62V, I64V, E65D, V75I | D |
| | TBK088 | TBK088 | EU251771 | None | | | | I13V, R41K, L63P, H69Y | D |
| | TBK089 | TBK089 | EU251772 | None | | | | I13V, N37S, R41K, L63Q, I64V, E65D, H69Y | D |
| | TBK091 | TBK091 | EU251774 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| | TBK093 | TBK093 | EU251775 | None | | | | T12S, I13V, I15V, L19I, E35D, R41K, L63T, H69KQ, A71T, V82I, I93L | D |
| | TMS013 | TMS013 | EU251793 | None | | | | I13V, R41K, L63S, I64V, H69Y, I72V | D |
| | TMS015 | TMS015 | EU251794 | None | | | | I13V, I15V, E35D, M36I, R41K, I64V | D |
| | TMS017 | TMS017 | EU251796 | None | | | | I13V, L19I, R41K, L63S, I64V, H69Y, I72T | D |
| | TMS036 | TMS036 | EU251805 | None | | | | I13V, I15V, R41K, D60E, I64V, H69Q, I72V, V77I | D |
| | TMS106 | TMS106 | EU251809 | None | | | L23I, L33I | I13V, D25DV, M36T, L38LS, P39S, R41K, D60E, I62V, L63H, I64V | D |
| | TMS112 | TMS112 | EU251812 | None | | | | I13V, I15V, E35D, M36I, R41K, I64V | D |
| | TMS113 | TMS113 | EU251813 | None | | | | I13V, R41K, I64V, V77I | D |
| | TMS132 | TMS132 | EU251830 | None | | | | I13V, K20R, M36I, R41K, R57RK, D60DE, I62V, L63LHQ, I64V | D |
| | TMS201 | TMS201 | EU251838 | None | | | | L10I, I13V, L19Q, M36MI, R41K, I64V, K70R, A71T | D |
| | TMS203 | TMS203 | EU251840 | None | | | | I13V, I15V, G16E, P39T, R41K, I62V, L63P, I64V, V77I | D |
| | TMS209 | TMS209 | EU251846 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, H69C | D |
| | TMS213 | TMS213 | EU251848 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, D60E, I62V, I64V | D |
| | TMS215 | TMS215 | EU251850 | None | | | L33IV | I13V, M36I, P39S, R41K, D60E, I64V | D |
| | TMS220 | TMS220 | EU251853 | None | | | | L10V, I13V, E35D, P39Q, R41K, D60E, L63P, I64V, H69K, A71T, V77I | D |
| | TMS308 | TMS308 | EU251859 | None | | | | I13V, G16E, M36I, R41K, D60E, I62V, L63Q, I64V | D |
| | TMS309 | TMS309 | EU251860 | None | | | | I13V, M36I, R41K, I64V | D |
| | TMS311 | TMS311 | EU251861 | None | | | | I13V, M36I, R41K, D60E, I62V, I64V, I72V | D |
| | TMS318 | TMS318 | EU251864 | None | | | | I13V, M36I, R41K, I64V, H69K | D |
| | TMS322 | TMS322 | EU251868 | None | | | | I13V, M36I, R41K, D60E, I64V, H69K | D |
| | TMS332 | TMS332 | EU251872 | None | | | | I13V, M36I, R41K, D60E, I64V, H69K, V77I | D |
| Somi (2008) | BG-05-166 | BG-05-166 | JQ616945 | None | | | | I13V, M36I, R41K, D60E, L63Q, I64V, I72V | D |
| | BG-05-957 | BG-05-957 | JQ616954 | None | | | | I13V, K14R, K20KQ, E35D, M36I, R41K, K45KR, H69K, L89M | D |
| | RB-05-083 | RB-05-083 | JQ616962 | None | | | | I13V, R41K, R57K, L63A, H69Y | D |
| Ayouba (2009) | 2917 | 2917HALDPR | GQ351978 | None | | | | I13V, E35D, R41K, Q61H, I64V, K70R | D |
| Bartolo (2009) | CSE116 | 01AOCSE116 | EU068199 | None | | | | L10V, I13V, K14T, I15V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | HAB83 | 01AOHAB83 | EU068217 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, N37S, R41K, R57K, L63T, L89M | D |
| | HAB85 | 01AOHAB85 | EU068218 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, H69S, L89M | D |
| | HDC238 | 01AOHDC238 | EU068230 | None | | | | I13V, E35N, R41K, D60E, L63P | D |
| | HDC239 | 01AOHDC239 | EU068231 | None | | | | L10V, I13V, K14R, G16E, E35D, M36I, R41K, L63H, I64V, H69Q, I72V | D |
| | HJM114 | 01AOHJM114 | EU068252 | None | | | | I13V, K20R, M36I, N37D, R41K, I64V | D |
| Brumme (2009) | A2508 | A2508 | GQ371768 | None | | | | I13V, Q18L, M36I, I62V, L63P, A71V, I93L | D |
| | F8527 | F8527 | GQ371881 | None | | | | L10I, I13V, G16E, M36I, R41K, L63T, I93L | D |
| | K9530 | K9530 | GQ371973 | None | | | | I13V, M36I, R41K, I64V | D |
| Cuevas (2009) | P1293 | P1293.1 | EU822625 | None | | | | L10I, I13V, M36I, R41K, K43R, L63PS, I64V | D |
| Eshleman (2009) | D08444W3 | 07-156544 | FJ389051 | None | | | | L10V, I13V, K20R, M36I, R41K, L63T, I64V, E65D, I72V | D |
| | G49070R9 | 07-156545 | FJ389052 | None | | | | I13V, K20R, M36I, R41K, L63Q, I64V, E65D | D |
| | J05347W1 | 07-156549 | FJ389053 | None | | | | I13V, L33V, P39S, R41K, I62V, I64V | D |
| | E40578W1 | 07-156559 | FJ389054 | None | | | | I13V, K20R, M36I, R41K, I62V, L63Q, I64V, E65D | D |
| | D09716B6 | 07-156562 | FJ389055 | None | | | | I13V, K14KR, A22AV, M36MI, R41K, I64V, H69Y | D |
| | E23593W1 | 07-156889 | FJ389057 | None | | | | I13V, R41K, I64V, H69Y | D |
| | B03497W2 | 07-156906 | FJ389060 | None | | | | I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V | D |
| | B06329W1 | 07-156909 | FJ389061 | None | | | | I13V, M36I, R41K, I64V | D |
| | B08298B6 | 07-156912 | FJ389062 | None | | | | I13V, R41K, I64V | D |
| | B20757W3 | 07-156919 | FJ389063 | None | | | | I13V, L33V, R41K, I62V, L63P, I64V, E65D, K70R | D |
| | C36303W3 | 07-156922 | FJ389064 | None | | | | I13V, L33V, R41K, R57K, L63LQ, I64IV, I72V | D |
| | E04754B6 | 07-156932 | FJ389069 | None | | | | I13V, I15V, R41K | D |
| | E35130W3 | 07-156939 | FJ389072 | None | | | | I13V, G17E, N37K, R41K, I64V, H69Y, V77I | D |
| | H02375W2 | 07-156958 | FJ389077 | None | | | | I13V, I15V, M36I, N37D, R41K, V75I | D |
| | H15006W2 | 07-156959 | FJ389078 | None | | | | I13V, I15IV, L33V, R41K, I64V | D |
| | K09623B6 | 07-156971 | FJ389081 | None | | | | I13V, R41K, L63H, I64V | D |
| | K39436W2 | 07-156978 | FJ389084 | None | | | | I13V, R41K, L63P, I64V, H69Y | D |
| | C10111W3 | 07-156980 | FJ389086 | None | | | | I13V, K20M, M36I, R41K, I64V, H69Y | D |
| | E22831W1 | 07-156982 | FJ389088 | None | | | | I13V, K20KR, L33V, N37S, I64V, I72V | D |
| | F20947R9 | 07-156983 | FJ389089 | None | | | | I13V, M36I, R41K, I64V | D |
| | F35636W3 | 07-156984 | FJ389090 | None | | | | I13V, M36I, R41K, I64V | D |
| | H30633W1 | 07-156985 | FJ389091 | None | | | | I13V, I15V, N37D, R41K, D60E, L63P, H69Y | D |
| | B22943W3 | 07-156987 | FJ389092 | None | | | | I13V, R41K, L63Q, I64V, H69Y, I72E, V77I | D |
| | C03919W2 | 07-156988 | FJ389093 | None | | | | I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V | D |
| | F07344W1 | 07-156991 | FJ389094 | None | | | | I13V, K14R, L33V, R41K, I64V, E65D, P81PL | D |
| | J31493W1 | 07-156994 | FJ389096 | None | | | | I13V, M36I, R41K, I62IV, I64V, C67CHRY, H69K | D |
| | A02378W2 | 07-156995 | FJ389097 | None | | | | I13V, I15V, M36I, N37D, R41K, V75I | D |
| | A05705W3 | 07-156996 | FJ389098 | None | | | | L10I, I13V, R41K, I64V, C67S | D |
| | K13668W3 | 07-156999 | FJ389101 | None | | | | I13V, G16E, K20R, M36I, R41K, D60E, Q61E, I62V, I64V, I72K | D |
| | K13985B6 | 07-157000 | FJ389102 | None | | | | I13V, I15V, M36I, N37S, P39S, R41K, L63Q, I64V | D |
| | H13802B6 | 08-101500 | FJ389106 | None | | | | I13V, L33V, R41K, I64V, E65D, H69HY, K70KR | D |
| | H20818W2 | 08-101503 | FJ389107 | None | | | | I13V, K14R, K20R, M36I, N37D, R41K, A71T | D |
| | A40697W2 | 08-101505 | FJ389109 | None | | | | I13V, M36I, R41K, L63P, I64IV | D |
| | J22380W2 | 08-101535 | FJ389116 | None | | | | I13V, L33V, R41K, I64V, H69Y, I72T | D |
| | J45014W3 | 08-101543 | FJ389117 | None | | | L33I | I13V, G16E, M36I, R41K, I64V, I72IV | D |
| | K13286W3 | 08-101560 | FJ389120 | None | | | | I13V, M36I, R41K, L63P | D |
| | K27580M1 | 08-101567 | FJ389122 | None | | | L33F | I13V, K14R, M36I, N37S, R41K, I62V, I64V, C67Q, H69Y, I72V, V77I | D |
| | F03996W1 | 08-101570 | FJ389123 | None | | | | I13V, I15V, M36I, R41K, L63V, I64V, E65D | D |
| | G10555B6 | 08-101571 | FJ389124 | None | | | | I13V, M36I, R41K, I64V | D |
| | G32218W2 | 08-101573 | FJ389126 | None | | | | I13V, Q18I, L33V, M36I, I64V, C67CY, I72V | D |
| | H13771W2 | 08-101575 | FJ389127 | None | | | | I13V, M36I, R41K, I64V | D |
| | H39955W2 | 08-101578 | FJ389129 | None | | | | I13V, R41K, D60E, I64V, V77I | D |
| | K31818R9 | 08-101584 | FJ389131 | None | | | | T12A, I13V, K20R, M36I, R41K, I62V, L63S, I64V | D |
| | K45887W3 | 08-101589 | FJ389133 | None | | | | I13V, R41K, L63H, I64V, I72ILV | D |
| | K23352W2 | 08-101592 | FJ389134 | None | | | | I13V, M36I, R41K, Q61N, I64V, H69Y, I72V | D |
| | J03096W3 | 08-101793 | FJ389135 | None | | | | I13V, L33V, R41K, I64V, K70R | D |
| | K09738W2 | 08-102645 | FJ389136 | None | | | | I13V, M36I, R41K, I64V | D |
| | K12281R9 | 08-102646 | FJ389137 | None | | | | I13V, M36I, R41K, D60E, L63E, I64V | D |
| | A06734R9 | 08-102647 | FJ389138 | None | | | | I13V, K20I, M36I, R41K, L63P, I64V, E65D | D |
| | A13889W2 | 08-102648 | FJ389139 | None | | | | I13V, E35D, N37D, R41K, I64V, H69Y | D |
| | C03294W3 | 08-102651 | FJ389142 | None | | | | I13V, I15V, M36I, R41K, I64V, K70KR | D |
| | C08508W1 | 08-102848 | FJ389143 | None | | | | T12P, I13V, L19I, M36I, R41K, I64V, H69Y | D |
| | C25290W3 | 08-102854 | FJ389144 | None | | | | L10V, I13V, G16E, M36I, R41K, L63Q, I64V, V75VI | D |
| | E21365W2 | 08-102874 | FJ389148 | None | | | | I13V, R41K, L63H, I64V, K70T, I72M, V77I | D |
| | E35635W3 | 08-102880 | FJ389149 | None | | | | I13V, M36I, R41K, I64V | D |
| | F39204W2 | 08-102893 | FJ389150 | None | | | | I13V, K20KR, M36I, R41K, I64V, K70R | D |
| | G45410W3 | 08-102897 | FJ389152 | None | | | | I13V, R41K, R57K, D60E, I64V, K70R | D |
| Fujisaki (2009) | 60 | 60 | AB442247 | None | | | | I13V, G17GE, M36I, N37D, R41K, D60E, I62IV, L63P, I64V, K70R | D |
| Hawkins (2009) | P650 | ZZP650 | FJ931154 | None | | | L33F | L10V, I13V, K20V, M36I, N37S, P39S, R41K, L63T, I64V, E65D, I72V | D |
| | R61 | ZZR61 | FJ931300 | None | | | | I13V, K20R, M36I, R41K, I62V, L63A, I64V, E65D | D |
| | Q967 | ZZQ967 | FJ931372 | None | | | | I13V, K14KR, K20I, M36I, R41K, L63A, I64L | D |
| Nadai (2009) | CRC08656 | CRC08656 | EU439750 | None | | | | I13V, N37S, R41K, D60E, I62V, L63P, I72M, V77I | D |
| Steegen (2009) | BV232 | BV232-1 | EU872131 | None | | | L33I | I13V, L19IV, K20KM, M36I, R41K, K43KR, R57K, Q61E, L63P, I64V, E65ED, I72IV, I93L | D |
| Vercauteren (2009) | pt2185 | 108155411 | GQ398839 | None | | | | Q7R, L10LP, T12A, I13V, I15V, K20I, E35D, M36I, R41K, L63P, I64L, H69HD | D |
| | pt2129 | 04fKkOcQne | GQ398895 | None | | | | I13V, M36I, R41K, I64V, H69HY | D |
| | pt1881 | 1dcpCYriD6 | GQ399143 | None | | | | I13V, I15V, E35D, N37S, R41K, I64V, H69Y, V77I | D |
| | pt1833 | 2296264890 | GQ399191 | None | | | | I13V, D60E, I62V, L63P | D |
| | pt1735 | 29v7g5fT1y | GQ399289 | None | | | | I13V, I15V, R41K, I64V | D |
| | pt1732 | 2M624iEVRo | GQ399292 | None | | | L33F | I13V, M36I, R41K, I62V, I64V, C67CS | D |
| | pt1708 | 3124576130 | GQ399316 | None | | | | T12L, I13V, G16E, E35D, M36I, R41K, K45R, D60E, I62V, L63AS, I64V, I72IV | D |
| | pt1692 | 31B1W2XiW5 | GQ399332 | None | | | | I13V, K20R, L33V, M36I, R41K, I62V, L63S, I64V | D |
| | pt1633 | 3577906697 | GQ399391 | None | | | | I13V, L19I, N37S, R41K, L63P, I64V | D |
| | pt1624 | 3615684334 | GQ399400 | None | | | | I13V, I15IV, K20I, E35G, M36I, R41K, L63LP, V77I | D |
| | pt1373 | 4WujTWbhKX | GQ399651 | None | | | | I13V, K20KR, L33V, R41K, I64V, I72IV | D |
| | pt1335 | 5226438876 | GQ399689 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, I64L | D |
| | pt1268 | 5588432246 | GQ399756 | None | | | | I13V, L19LI, M36I, R41K, L63LP | D |
| | pt761 | 8593258083 | GQ400263 | None | | | | T12TAEK, I13V, K14KR, I15V, K20I, E35ED, M36I, R41K, L63P, I64L | D |
| | pt595 | 9420845038 | GQ400429 | None | | | | I13V, K14R, K20I, E35D, M36I, N37D, L63P | D |
| | pt513 | 9825473025 | GQ400511 | None | | | | I13V, I15IV, G17GE, E35D, M36I, N37D, R41K, D60E, I62IV, L63LP, I64IV, K70KR, I72IM | D |
| | pt22 | ysny8k8zMZ | GQ401002 | None | | | | I13V, M36I, N37S, R41K, I64V | D |
| Yebra (2009) | SP75-392005 | SP75-392005 | EU362927 | None | | | | I13V, I15V, E35D, M36I, R41K | D |
| Arruda (2010) | 1017 | 16CE081017 | JQ230590 | None | | | | I13V, K20R, L33V, M36I, P39PT, R41K, R57RK, I62V, L63P, I64V, E65D | D |
| Bonura (2010) | 1054_124 | 1054_124 | GU969484 | None | | | | I13V, M36I, R41K, L63PS | D |
| | 1068_133 | 1068_133 | GU969486 | None | | | | I13V, M36I, R41K, L63P | D |
| | 984_73 | 984_73 | GU969495 | None | | | | I13V, M36I, R41K, L63P | D |
| | 1136_102 | 1136_102 | GU969514 | None | | | | I13V, M36I, R41K, L63P, I64IL | D |
| | 1170_34 | 1170_34 | GU969535 | None | | | | I13V, E35D, M36I, R41K, L63P | D |
| Brennan (2010) | Pat114 | ARC-A117 | JN697265 | None | | | | L10V, I13V, I64V | D |
| | Pat033 | ARC-A207 | JN697346 | None | | | | I13V, M36I, R41K, I62V, I64V, K70R | D |
| Castelbranco (2010) | 090031A | 090031A | HM357747 | None | | | | I13V, G17D, M36I, R41K, I62V, I64IV | D |
| | 090037A | 090037A | HM357748 | None | | | | L10V, I13V, M36I, R41K, I64V, K70R | D |
| Diop-Ndiaye (2010) | 1898HALD | 1898HALD | FN599801 | None | | | | T12K, I13V, K14R, K20I, M36I, R41K, Q61D, L63P, I64V | D |
| Djoko (2010) | 682 | CD4059 | FR666682 | None | | | | I13V, L33V, R41K, L63P, H69Q | D |
| Hamers (2010) | 300425 | CP076300425 | HM119849 | None | | | | I13V, L19LI, L33V, R41KN, D60E, I62IV, L63P, V75I | D |
| Mosha (2010) | S2pol | S2pol | JQ071451 | None | | | | I13V, I15V, M36I, R41K, L63R, I64V, K70E | D |
| | S3pol | S3pol | JQ071452 | None | | | | I13V, R41K, I64V, H69Y | D |
| | S9Pol | S9Pol | JQ071457 | None | | | | I13V, G16A, R41K, I64V, K70R | D |
| | S17Pol | S17Pol | JQ071463 | None | | | | I13V, R41K, L63S, I64V, G73D | D |
| | S50Pol | S50Pol | JQ071480 | None | | | | I13V, R41K, L63P, H69Y, I72V | D |
| | S62Pol | S62Pol | JQ071482 | None | | | | I13V, G16GE, K20KM, E35ED, M36I, P39PS, R41K, R57RK, I64V, K70R | D |
| | S73Pol | S73Pol | JQ071490 | None | | | | I13V, R41K, L63P, H69HY, V77I | D |
| | S75Pol | S75Pol | JQ071492 | None | | | | I13V, R41K, L63P, H69K | D |
| | S76Pol | S76Pol | JQ071493 | None | | | | I13V, M36I, P39PS, R41K, I62V, L63P, I64IL, H69Y, I72V | D |
| Ndembi (2010) | 13075D_P1 | 13075 | GQ409548 | None | | | | I13V, M36I, R41K, I64V, K70R, I72V | D |
| | 13327D_P1 | 13327 | GQ409555 | None | | | | I13V, G16E, M36I, R41K, I64V | D |
| | 13734D_P1 | 13734 | GQ409557 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, D60E, I62V, L63P, I64V, I72V | D |
| | 13867D_P1 | 13867 | GQ409559 | None | | | | I13V, I15V, L19I, R41K, L63P, I64V, H69Y, V77I | D |
| | 14000D_P1 | 14000 | GQ409561 | None | | | | I13V, R41K, H69Y | D |
| | 14039D_P1 | 14039 | GQ409563 | None | | | | I13V, L33V, M36I, R41K, I64V, K70R | D |
| | 14318D_P1 | 14318 | GQ409566 | None | | | | I13V, L33V, M36MI, R41K, L63Q, I64V, E65D | D |
| | 14901D_P1 | 14901 | GQ409571 | None | | | | I13V, K14KR, K20R, M36I, R41K, I62V, I64V, H69Y, I72T | D |
| | 16343D_P1 | 16343 | GQ409584 | None | | | | L10I, I13V, L33V, R41K, I62V, L63I, I64V, I72T | D |
| | 16496D_P1 | 16496 | GQ409586 | None | | | | I13V, L33V, R41K, I64V | D |
| | 16666D_P1 | 16666 | GQ409587 | None | | | | I13V, K14R, L33V, R41K, L63P, I64V | D |
| | 17235D_P1 | 17235 | GQ409592 | None | | | | I13V, K20R, M36I, R41K, D60E, I62V, I64V | D |
| | DT0405_05_P1 | 405 | GQ409595 | None | | | | I13V, I15V, M36I, P39S, R41K, I62V, I64V, H69Y, I72V | D |
| | DT0917_05_P1 | 917 | GQ409596 | None | | | | I13V, M36I, R41K, L63Q, I64V, E65D | D |
| | DT1335_05_P1 | 1335 | GQ409599 | None | | | | I13V, R41K, I64V, I72T | D |
| | DT2412_05_P1 | 2412 | GQ409606 | None | | | Q58E | I13V, R41K, L63P, I64V, I72V | D |
| | DT3211_05_P1 | 3211 | GQ409613 | None | | | | I13V, I15V, N37S, R41K, L63Q | D |
| | DT3479_05_P1 | 3479 | GQ409616 | None | | | | I13V, K20R, M36I, N37D, R41K, R57K, Q61E, I64V, E65D | D |
| | DT3951_05_P1 | 3951 | GQ409626 | None | | | | I13V, M36I, R41K, L63P, I72V | D |
| | DT3952_05_P1 | 3952 | GQ409627 | None | | | | I13V, I15V, R41K, L63S, I64V, E65D, I72V, V77I | D |
| | DT5712_04_P1 | 5712 | GQ409630 | None | | | | I13V, R41K, L63P, I64V, H69Y, I72E, V77I | D |
| | DT1524_05_P1 | 1524 | GQ409631 | None | | | | I13V, R41K, L63P, I64V, H69Y, I72E, V77I | D |
| | 16535D_P1 | 16535 | GQ409634 | None | | | Q58E | I13V, L19I, M36I, R41K, L63T, I64V, E65D | D |
| Towler (2010) | 12 | 353334-H | HM037823 | None | | | | I13V, I15V, M36MI, R41K, I64V | D |
| | | 434747-M | HM037890 | None | | | | I13V, I15V, R41K, I64V | D |
| | | 518577-J | HM037902 | None | | | | I13V, I15V, R41K, I64V | D |
| | 384840-B | 384840-B | HM037825 | None | | | | I13V, I15IV, L19I, M36I, R41K, I64V | D |
| | 439553-X | 439553-X | HM037830 | None | | | | L10V, I13V, G16E, K20R, M36I, P39S, R41K, I62V, L63P, I72V | D |
| | 5or3 | 452976-H | HM037832 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | | 533249-H | HM037894 | None | | | | I13V, K14KN, E21ED, E35ED, M36I, R41K, I64V, K70R | D |
| | 454358-Z | 454358-Z | HM037833 | None | | | | I13V, R41K, R57K, D60E, Q61E, L63P, I64V, H69Y, V77I | D |
| | 315998-Z | 315998-Z | HM037834 | None | | | | I13V, R41K, L63S, I64V, V77I | D |
| | 320707-D | 320707-D | HM037841 | None | | | | I13V, K20KR, M36I, R41K, I62V, L63S, I64V | D |
| | 322177-Q | 322177-Q | HM037844 | None | | | | I13V, R41K, L63LP, I64V, E65D, V77I | D |
| | 335694-K | 335694-K | HM037851 | None | | | | T12TKN, I13V, L19I, M36I, R41K, L63C, I64V | D |
| | 339909-M | 339909-M | HM037856 | None | | | | L10LV, I13V, R41K, I64V | D |
| | 348266-T | 348266-T | HM037858 | None | | | | I13V, M36I, R41K, L63P, I64V | D |
| | 366925-C | 366925-C | HM037861 | None | | | | I13V, K14R, L33V, R41K, I64V, E65D | D |
| | 408513-V | 408513-V | HM037871 | None | | | | I13V, G16E, K20R, M36I, P39T, R41K, I64V | D |
| | 413094-D | 413094-D | HM037872 | None | | | | L10LI, I13V, L33V, R41K, L63PS, I64V, C67CY | D |
| | 427985-P | 427985-P | HM037875 | None | | | | I13V, R41K, Q61E, L63S, I64V, E65D, H69Y, V77I | D |
| | 436029-H | 436029-H | HM037878 | None | | | | I13V, K20R, M36I, R41K, I64V, H69Y, I72V | D |
| | 449280-S | 449280-S | HM037880 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | 450487-M | 450487-M | HM037881 | None | | | | I13V, K20M, M36I, P39S, R41K, I62V, L63P, I64V | D |
| | 450486-B | 450486-B | HM037882 | None | | | | I13V, R41K, V77I, L89I | D |
| von Wyl (2010) | 4796734 | 4796734 | GQ848131 | None | | | | Q7E, I13V, K14R, I15V, L19I, M36I, R41K, I62V, L63P, I72V, V77I | D |
| Yang (2010) | 2010693436 | 2010693436 | JQ616878 | None | | | | L10I, I13V, I15V, K20I, E35D, M36I, R41K, Q61H, K70R, A71T, I72E | D |
| | 2010693444 | 2010693444 | JQ616884 | None | | | | I13V, G17D, K20R, M36I, R41K, I62IV, L63X, I64IM | D |
| | 2010693453 | 2010693453 | JQ616908 | None | | | | L10I, I13V, I15V, K20I, E35D, M36I, R41K, H69L, K70R, A71T, I72E | D |
| Aghokeng (2011) | SK9016-M18 | SK9016-M18 | HQ864355 | None | | | | I13V, Q18QH, L19LM, K20R, M36I, R41K, K45KR, L63A | D |
| Charpentier (2011) | 69 | CP 001 805 | | None | | | | W6*, I13V, M36I, R41K, L63P, H69Y, I72V | D |
| de Medeiros (2011) | Pat021 | RS143 | JF487850 | None | | | | I13V, M36I, R41K, I72R | D |
| El Annaz (2011) | 7603 | 7603 | HQ393285 | None | | | | I13V, K14KR, I15V, K20I, E35N, M36I, R41K, K45R, L63A | D |
| | 9205 | 9205 | HQ393293 | None | | | | I13V, Q18H, E35D, M36I, R41K, K45R, R57RK, L63T, I64V, E65D | D |
| | 9668 | 9668 | HQ393295 | None | | | | I13V, Q18H, E35D, M36I, R41K, K45R, L63T, I64V, E65D | D |
| | 11509 | 11509 | HQ393307 | None | | | | I13V, M36I, N37D, L63T, I64V, E65D, I72IV | D |
| | 14107 | 14107 | HQ393314 | None | | | L33I | I13V, I15IL, E35D, M36I, N37I, R41K, R57K, L63A, I64V, E65D, I72IV | D |
| Florea (2011) | 1091_2007 | 1091_2007 | JQ083019 | None | | | | T12P, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63A, L89M | D |
| | 1121_2007 | 1121_2007 | JQ083024 | None | | | | L10V, T12S, I13V, I15V, G16E, L19I, K20R, E35D, M36I, R57K, L63T, E65D, I72T, L89M | D |
| | 1572_2007 | 1572_2007 | JQ083028 | None | | | | I13V, I15V, L19LI, E35D, M36I, R41K, R57K, L63T, E65D, I72T, V82VI, L89M | D |
| | 1636_2007 | 1636_2007 | JQ083030 | None | | | | L10V, T12I, I13V, I15V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, I62V, L63T, E65D, I72T, T74TA, L89M | D |
| | 2360_2008 | 2360_2008 | JQ083043 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | 3004_2007 | 3004_2007 | JQ083048 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| | 4171_2007 | 4171_2007 | JQ083056 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, I62V, L63T, E65D, I72T | D |
| | 4175_2007 | 4175_2007 | JQ083057 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63T, E65D, I72T | D |
| | 4646_2007 | 4646_2007 | JQ083068 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, P39T, R41K, L63T, E65D, I72T, L89M | D |
| | 4887_2007 | 4887_2007 | JQ083075 | None | | | | L10V, I13V, I15IV, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| Hamers (2011) | CP076301544 | CP076301544 | HQ993587 | None | | | | I13V, L19LI, M36L, R41K, L63P, I72M, L89LF | D |
| | CP076301547 | CP076301547 | HQ993590 | None | | | | I13V, L19I, R41K, L63S, I64V, H69Y | D |
| | CP076301552 | CP076301552 | HQ993595 | None | | | | I13V, M36I, R41K, L63LP, I64V, I72V | D |
| | CP076301557 | CP076301557 | HQ993599 | None | | | | I13V, L19V, L33V, M36I, N37T, R41K, L63P, I72V | D |
| | CP076301559 | CP076301559 | HQ993601 | None | | | | I13V, M36I, R41K, D60E, I64V | D |
| | CP076301572 | CP076301572 | HQ993612 | None | | | | I13V, L33V, M36L, R41K, R57K, D60E, I62V, I64V, K70KR | D |
| | CP076301603 | CP076301603 | HQ993641 | None | | | | I13V, N37H, R41K, R57RK, L63LP, I64V, E65ED, I72IV, V77VI | D |
| | CP076301620 | CP076301620 | HQ993656 | None | | | | I13V, G16E, E35D, M36I, R41K, Q61E, I62V, I64V, H69HY, I72R, V77VI | D |
| | CP076301657 | CP076301657 | HQ993662 | None | | | | I13V, M36IV, R41K, L63P, K70KR | D |
| | CP076301677 | CP076301677 | HQ993673 | None | | | | I13V, G16E, R41K, I62IV, L63T, I64L, I72V, V77I | D |
| | CP076301686 | CP076301686 | HQ993682 | None | | | | L10V, I13V, G16E, M36I, R41K, D60DE, L63H, I64V, H69C, I72V | D |
| | CP076301702 | CP076301702 | HQ993697 | None | | | | P9PILT, L10LV, T12TS, I13V, K14KR, N37T, R41K, R57RK, D60DE, L63C, I64V, E65ED, K70KR | D |
| | CP076301713 | CP076301713 | HQ993707 | None | | | | L10V, T12PQ, I13V, G16E, R41K, L63T, E65D, V77I | D |
| | CP076301721 | CP076301721 | HQ993714 | None | | | | L5X, I13V, M36I, N37Q, R41K, I62V, L63N, I64V, H69Y, I72IV | D |
| | CP076301764 | CP076301764 | HQ993751 | None | | | | I13V, M36I, R41K, D60E, I64V | D |
| | CP076301767 | CP076301767 | HQ993753 | None | | | | I13V, K20R, E35G, M36I, N37D, R41K, I64V, E65D | D |
| | CP076301769 | CP076301769 | HQ993755 | None | | | | I13V, K20M, E35N, M36I, R41K, R57RKQ, Q61DE, I62IV, L63E, I64V, E65ED, C67CW, K70KR | D |
| | CP076301771 | CP076301771 | HQ993757 | None | | | | I13V, K20R, M36I, R41K, I62IV, L63LP, I64V, H69HY, I72V | D |
| | CP076301630 | CP076301630 | HQ993779 | None | | | | I13V, L19I, M36I, R41K, I64V, H69K | D |
| | CP076301661 | CP076301661 | HQ993799 | None | | | | I13V, I15IV, Q18H, M36I, R41K, L63P | D |
| | CP076302206 | CP076302206 | HQ993810 | None | | | | I13V, G16E, K20R, M36I, R41K, I72V | D |
| | CP076302306 | CP076302306 | HQ993852 | None | | | | L10V, I13V, L19I, R41K, L63P, I64V, I72E | D |
| | CP076304156 | CP076304156 | HQ993881 | None | | | | I13V, E35D, M36I, R41K, I62IV, I64V | D |
| | CP076304183 | CP076304183 | HQ993895 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | CP076304196 | CP076304196 | HQ993900 | None | | | | I13V, M36I, R41K, I64IV | D |
| | CP076304217 | CP076304217 | HQ993913 | None | | | | I13V, K20R, M36I, R41K, L63A, I64V, I72IV | D |
| | CP076304218 | CP076304218 | HQ993914 | None | | | | I13V, M36I, N37D, R41K, R57K, D60E, L63P, I64V | D |
| | CP076304223 | CP076304223 | HQ993918 | None | | | | L10I, I13V, G17E, M36L, P39P*QS, R41K, Q61H, I62V, L63T, I64V, E65D | D |
| | CP076304227 | CP076304227 | HQ993922 | None | | | | L10LI, I13V, N37NCSY, R41RK, Q61DE, L63P, I64M, H69Y, I72V, V77I | D |
| | CP076304236 | CP076304236 | HQ993929 | None | | | | I13V, L63PQ, I64V, I72V | D |
| | CP076304260 | CP076304260 | HQ993948 | None | | | | I13V, G16E, L33LV, M36I, P39S, R41K, K45R, D60E, I62V, L63P, I64V, I72IV | D |
| | CP076303149 | CP076303149 | HQ994171 | None | | | | I13V, L19LV, M36I, N37ND, R41K, L63Q, I64V | D |
| | CP076300721 | CP076300721 | HQ994924 | None | | | | T12P, I13V, R41K, D60E, L63P, C67S, I72V | D |
| | CP076300738 | CP076300738 | HQ994929 | None | | | | L10V, I13V, G16E, E35ED, M36I, N37D, R41K | D |
| | CP076300761 | CP076300761 | HQ994937 | None | | | | I13V, R41K, L63P, I64V, H69Y, I72T, V77I | D |
| | CP076300802 | CP076300802 | HQ994941 | None | | | | I13V, R41K, I64V, V77VI | D |
| | CP076300807 | CP076300807 | HQ994944 | None | | | | L10I, I13V, M36I, R41K, D60E, I62V, L63P, C67D | D |
| | CP076300815 | CP076300815 | HQ994947 | None | | | | I13V, M36I, R41K, L63V, I64V | D |
| | CP076300841 | CP076300841 | HQ994957 | None | | | L33I | I13V, K20M, E35D, M36I, R41K, L63Q, I64V, I72V | D |
| | CP076300854 | CP076300854 | HQ994959 | None | | | | I13V, I15V, M36I, R41K, I64V, I72V | D |
| | CP076300879 | CP076300879 | HQ994963 | None | | | | I13V, M36I, N37H, R41K, L63Q, I64V, E65D, I72V | D |
| | CP076300886 | CP076300886 | HQ994966 | None | | | | I13V, L33V, P39S, R41K, R57K, I62V, L63A, I64V, E65D | D |
| | CP076300894 | CP076300894 | HQ994969 | None | | | Q58E | I13V, L33V, M36I, P39Q, R41K, I62IV, L63Q, I64V, E65D, I72V | D |
| | CP076300900 | CP076300900 | HQ994971 | None | | | | L10V, I13V, I15V, R57RK, L63Q, I64V | D |
| | CP076301791 | CP076301791 | HQ994973 | None | | | | I13V, I15L, L33V, M36I, R41K, I64V | D |
| | CP076301798 | CP076301798 | HQ994975 | None | | | L33F | I13V, K20I, M36I, R41K, I64V, E65D | D |
| | CP076301803 | CP076301803 | HQ994977 | None | | | | I13V, I15L, L33V, M36I, R41K, I64V | D |
| | CP076301806 | CP076301806 | HQ994978 | None | | | | I13V, M36I, R41K, L63P | D |
| | CP076301817 | CP076301817 | HQ994979 | None | | | | I13V, I15V, M36I, R41K, L63P, I64V, I72E | D |
| | CP076301830 | CP076301830 | HQ994984 | None | | | | I13V, M36I, R41K, I64V, K70R | D |
| | CP076301836 | CP076301836 | HQ994987 | None | | | | T12A, I13V, G16E, R41K, R57K, L63R, I64V | D |
| | CP076301846 | CP076301846 | HQ994991 | None | | | | I13V, M36I, R41K, K45R, L63S, I64V, E65D, I72V | D |
| | CP076301863 | CP076301863 | HQ994999 | None | | | | I13V, M36I, R41K, I64V | D |
| | CP076301864 | CP076301864 | HQ995000 | None | | | | L10V, I13V, M36I, R41K, L63P, I64V, E65D | D |
| | CP076301867 | CP076301867 | HQ995002 | None | | | Q58E | I13V, K20R, M36I, N37D, R41K, R57K, L63V, I64V | D |
| | CP076301872 | CP076301872 | HQ995004 | None | | | | I13V, M36I, R41K, L63P, I64V, H69Y, I72V | D |
| | CP076301883 | CP076301883 | HQ995011 | None | | | L33I | T12P, I13V, K20M, M36I, R41K, L63S, I64V | D |
| | CP076301885 | CP076301885 | HQ995013 | None | | | V11I | L10M, I13V, E35D, R41K, L63T, I64V | D |
| | CP076302052 | CP076302052 | HQ995021 | None | | | | L10I, I13V, G16E, M36I, R41K, L63T, I64V, C67S, I72IV | D |
| | CP076302063 | CP076302063 | HQ995026 | None | | | | L10V, I13V, L19T, P39T, R41K, L63P, I64L | D |
| | CP076302065 | CP076302065 | HQ995028 | None | | | | I13V, K20R, M36I, R41K, L63PQ, I64V, E65D | D |
| | CP076302071 | CP076302071 | HQ995031 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | CP076302964 | CP076302964 | HQ995050 | None | | | | I13V, R41K, D60E, L63P | D |
| | CP076302980 | CP076302980 | HQ995057 | None | | | | I13V, M36L, R41K, I62V, I64V | D |
| | CP076302982 | CP076302982 | HQ995059 | None | | | | Q7H, L10I, I13V, I15V, Q18H, K20M, M36I, N37D, R41K, L63T, I64V, E65D, K70R | D |
| | CP076302984 | CP076302984 | HQ995060 | None | | | | I13V, M36I, R41K, I64V, H69Y, I72V | D |
| | CP076302993 | CP076302993 | HQ995065 | None | | | | I13V, M36I, R41K, D60E, I62V, L63S, I64V | D |
| | CP076303006 | CP076303006 | HQ995071 | None | | | | I13V, M36I, R41K, K43R, R57K, L63P, I64V | D |
| | CP076303007 | CP076303007 | HQ995072 | None | | | | L10V, I13V, G16E, K20R, M36I, P39S, R41K, I64V, K70KR | D |
| | CP076303008 | CP076303008 | HQ995073 | None | | | | I13V, K14R, M36I, R41K, L63P, I64V, I72T | D |
| | CP076303012 | CP076303012 | HQ995077 | None | | | | L10I, I13V, L19M, M36I, R41K, L63V, I64V, E65D | D |
| | CP076303018 | CP076303018 | HQ995082 | None | | | | I13V, K14R, G16E, R41K, L63S, I64V | D |
| | CP076303021 | CP076303021 | HQ995085 | None | | | | I13V, M36I, R41K, I64V, K70KR | D |
| | CP076303027 | CP076303027 | HQ995090 | None | | | | L10V, I13V, M36I, R41K, I64V | D |
| | CP076303028 | CP076303028 | HQ995091 | None | | | | L10I, I13V, I15V, M36I, R41K, I64V, K70R | D |
| | CP076303030 | CP076303030 | HQ995092 | None | | | | I13V, L19V, M36I, R41K, I62V, L63S, I64V, H69Y, I72V | D |
| | CP076303037 | CP076303037 | HQ995098 | None | | | | L10LI, T12A, I13V, M36I, R41RK, L63T, I64V, I72IV | D |
| | CP076300742 | CP076300742 | HQ995100 | None | | | | I13V, M36I, R41K, D60E, I62V, L63P, I64V | D |
| | CP076300848 | CP076300848 | HQ995115 | None | | | | T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69Y | D |
| | CP076300851 | CP076300851 | HQ995118 | None | | | | T12P, I13V, M36I, P39T, D60E, L63P, I64V, H69Y | D |
| | CP076300864 | CP076300864 | HQ995125 | None | | | | I13V, N37D, R41K, L63H, I64V, E65D, V77I | D |
| | CP076300870 | CP076300870 | HQ995128 | None | | | | I13V, E35D, M36I, R41K, L89M | D |
| | CP076300872 | CP076300872 | HQ995129 | None | | | | I13V, R41K, D60E, L63S, I64V, V77I | D |
| | CP076300876 | CP076300876 | HQ995132 | None | | | | I13V, I15V, M36I, R41K, I64V, I72V | D |
| | CP076300880 | CP076300880 | HQ995134 | None | | | | I13V, K14KR, G16A, M36I, R41K, V77VI | D |
| | CP076300884 | CP076300884 | HQ995136 | None | | | | I13V, K14KR, K20R, M36I, R41K, H69Y, I72V | D |
| | CP076300892 | CP076300892 | HQ995140 | None | | | | I13V, R41K, L63Q, I64V, E65D, H69Y, V77I | D |
| | CP076301797 | CP076301797 | HQ995149 | None | | | | I13V, M36I, R41K, I64V | D |
| | CP076301819 | CP076301819 | HQ995161 | None | | | | I13V, M36MI, R41K, K43R, R57K, L63P, I64V | D |
| | CP076301840 | CP076301840 | HQ995167 | None | | | | L10I, I13V, L19M, M36I, R41K, L63V, I64V, E65D | D |
| | CP076301841 | CP076301841 | HQ995168 | None | | | | I13V, R41K, L63Q, I64V, E65D | D |
| | CP076301845 | CP076301845 | HQ995169 | None | | | | I13V, K14R, M36I, R41K, I64V | D |
| | CP076301848 | CP076301848 | HQ995170 | None | | | | I13V, G16E, K20R, M36I, P39S, R41K, I64V, K70KR | D |
| | CP076301850 | CP076301850 | HQ995171 | None | | | | I13V, M36I, R41K, I64V, K70KR | D |
| | CP076301871 | CP076301871 | HQ995175 | None | | | | L10LI, I13V, I15V, M36I, R41K, L63P, I64V, K70R | D |
| | CP076302010 | CP076302010 | HQ995186 | None | | | | I13V, R41K, L63P, I64V, I72IV, V77I | D |
| | CP076302024 | CP076302024 | HQ995193 | None | | | | L10V, I13V, K20R, E35D, M36I, L63P, H69Q | D |
| | CP076302027 | CP076302027 | HQ995194 | None | | | | I13V, K20R, M36I, N37NT, R41K, R57K, L63P, I64V, H69Y, I72V | D |
| | CP076302031 | CP076302031 | HQ995196 | None | | | | I13V, G16E, K20R, M36I, R41K, R57K, I64V, H69Y | D |
| | CP076302051 | CP076302051 | HQ995203 | None | | | | L10V, I13V, G16E, E35D, R41K, R57K, L63R, I64V, E65D, I72M | D |
| | CP076302057 | CP076302057 | HQ995205 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | CP076302067 | CP076302067 | HQ995207 | None | | | | I13V, I15V, M36I, R41K, I64V, I72V | D |
| | CP076302972 | CP076302972 | HQ995218 | None | | | | I13V, M36I, N37D, L63T, I64V, E65D, K70R, I72V | D |
| | CP076302977 | CP076302977 | HQ995220 | None | | | | T12P, I13V, K14R, R41K, L63P, I64V, I72V | D |
| | CP076303041 | CP076303041 | HQ995225 | None | | | | L10V, I13V, M36L, R41K, D60E, Q61E, I62V, L63P, I64V | D |
| | CP076303042 | CP076303042 | HQ995226 | None | | | | I13V, M36I, R41K, I64V | D |
| | CP076303045 | CP076303045 | HQ995229 | None | | | | L10I, I13V, L33V, P39Q, R41K, I64V | D |
| | CP076303048 | CP076303048 | HQ995231 | None | | | | L10V, I13V, R41K, D60E, Q61E, L63P, I72V | D |
| | CP076303049 | CP076303049 | HQ995232 | None | | | | L10V, I13V, M36I, L63P, I64V, I72V | D |
| | CP076303053 | CP076303053 | HQ995235 | None | | | | I13V, R41K, L63P, I64L, A71T | D |
| | CP076303055 | CP076303055 | HQ995236 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V, H69Y | D |
| | CP076303056 | CP076303056 | HQ995237 | None | | | | L10V, I13V, M36L, N37D, R41K, L63P, I64V, H69Y, K70T, I72T | D |
| | CP076303067 | CP076303067 | HQ995247 | None | | | | I13V, R41K, D60E, L63Q, I64V, H69Y, V77I | D |
| | CP076303068 | CP076303068 | HQ995248 | None | | | | I13V, K14KR, M36I, R41K, L63LP, L89M | D |
| | CP076303079 | CP076303079 | HQ995257 | None | | | | I13V, E35D, R41K, I64V | D |
| | CP076303083 | CP076303083 | HQ995260 | None | | | | T12P, I13V, L19I, M36I, R41K, D60E, L63P, I64V, K70R | D |
| | CP076303084 | CP076303084 | HQ995261 | None | | | | I13V, M36I, N37D, R41K, L63T, I64V, E65D, K70R | D |
| | CP076303086 | CP076303086 | HQ995263 | None | | | | I13V, R41K, D60E, L63P | D |
| | CP076303089 | CP076303089 | HQ995266 | None | | | | L10V, I13V, M36I, R41K | D |
| | CP076303098 | CP076303098 | HQ995274 | None | | | | I13V, L33LV, M36I, R41K, I62V, L63P, I64V, H69Y, I72E | D |
| | CP076303099 | CP076303099 | HQ995275 | None | | | | I13V, M36I, R41K, Q61H, I62V, I64V, C67Y | D |
| | CP076303105 | CP076303105 | HQ995281 | None | | | | L10V, I13V, R41K, L63P, K70R | D |
| | CP076303117 | CP076303117 | HQ995293 | None | | | | I13V, M36I, R41K, Q61H, I64V | D |
| | CP076303123 | CP076303123 | HQ995297 | None | | | | I13V, M36I, N37D, R41K, R57K, I62V, L63P, I64V, E65D, H69Y, K70R, I72V | D |
| | CP076303132 | CP076303132 | HQ995304 | None | | | | I13V, L33V, N37S, R41K, I62V, L63P, I64L | D |
| | CP076300701 | CP076300701 | HQ995309 | None | | | | L10I, I13V, G16E, M36I, R41K, L63P, I64V, E65D | D |
| | CP076300705 | CP076300705 | HQ995311 | None | | | | L10V, T12K, I13V, G16E, L19V, N37S, R41K, L63H, I64V, V77I | D |
| | CP076300709 | CP076300709 | HQ995312 | None | | | | I13V, I15V, M36I, R41K, L63H, I64V, E65D, N98K | D |
| | CP076300725 | CP076300725 | HQ995319 | None | | | | I13V, K14K*, M36I, R41K, I64IV | D |
| | CP076300729 | CP076300729 | HQ995320 | None | | | | I13V, R41K, L63P, I64V, H69Y | D |
| | CP076300733 | CP076300733 | HQ995322 | None | | | | I13V, K20R, R41K, D60E, L63P, I64V, H69Y, I72T, V77I | D |
| | CP076300734 | CP076300734 | HQ995323 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, L63Q, I64V | D |
| | CP076300735 | CP076300735 | HQ995324 | None | | | | T12P, I13V, I15V, R41K, K55R, L63P, I64V, V77I | D |
| | CP076300752 | CP076300752 | HQ995330 | None | | | | L10V, I13V, M36I, R41K, L63LFPS, I64V | D |
| | CP076300772 | CP076300772 | HQ995340 | None | | | | L10V, I13V, G16E, M36I, R41K, L63C | D |
| | CP076300773 | CP076300773 | HQ995341 | None | | | | I13V, R41K, L63P | D |
| | CP076300786 | CP076300786 | HQ995350 | None | | | | L10I, I13V, M36I, R41K, I62V, L63Q, I64V, H69Y | D |
| | CP076300791 | CP076300791 | HQ995355 | None | | | | I13V, K14R, M36I, N37D, R41K, Q61H, I64V | D |
| | CP076300798 | CP076300798 | HQ995359 | None | | | | I13V, K14KR, K20KR, M36I, N37D, R41K, L63Q, I64V, E65D, I72V | D |
| | CP076300825 | CP076300825 | HQ995363 | None | | | | I13V, M36I, R41K, I64V, I72V | D |
| | CP076300863 | CP076300863 | HQ995364 | None | | | | I13V, L19H, M36I, R41K, I64V, H69HY | D |
| | CP076301886 | CP076301886 | HQ995365 | None | | | | I13V, G16E, K20R, M36I, R41K, I62V, L63H, I64V, E65D | D |
| | CP076301894 | CP076301894 | HQ995373 | None | | | | I13V, N37S, R41K, L63LP, I64IV | D |
| | CP076301896 | CP076301896 | HQ995375 | None | | | | I13V, L19I, R41K, R57K, L63Q, I64V, V77I | D |
| | CP076301898 | CP076301898 | HQ995377 | None | | | | I13V, K20R, M36I, R41K, I62V, L63T, I64V, E65D, I72V | D |
| | CP076301899 | CP076301899 | HQ995378 | None | | | | I13V, E35D, M36I, R41K, R57RK, D60E, I62V, I64V | D |
| | CP076301909 | CP076301909 | HQ995384 | None | | | | I13V, K20R, M36I, R41K, I64V, I72IV | D |
| | CP076301939 | CP076301939 | HQ995405 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, V77I | D |
| | CP076301940 | CP076301940 | HQ995406 | None | | | | L10LQ, I13V, K20KR, M36I, R41K, I62IV, L63P, I64IV, I72V | D |
| | CP076301946 | CP076301946 | HQ995411 | None | | | L33I | I13V, G16E, M36I, R41K, R57K, L63P, I64V, I72V | D |
| | CP076301948 | CP076301948 | HQ995413 | None | | | | L10V, I13V, M36IL, N37D, R41K, D60E, L63P, I64V, H69Y, I72V, V77I | D |
| | CP076301953 | CP076301953 | HQ995418 | None | | | | I13V, I15V, G17E, R41K, L63P, I64V | D |
| | CP076301954 | CP076301954 | HQ995419 | None | | | | I13V, M36I, R41K, L63P, I64V, H69Y, I72V, V77I | D |
| | CP076301958 | CP076301958 | HQ995423 | None | | | | I13V, R41K, L63P, I64V, V77I | D |
| | CP076301965 | CP076301965 | HQ995429 | None | | | | I13V, N37E, R41K, K43R, D60E, I62V, L63P, I64V, H69Y, I72L | D |
| | CP076301968 | CP076301968 | HQ995432 | None | | | | I13V, G16E, M36L, R41K, I64V | D |
| | CP076301974 | CP076301974 | HQ995438 | None | | | | I13V, I15V, E35D, R41K, L63P, I64V, H69Y, I72V | D |
| | CP076301975 | CP076301975 | HQ995439 | None | | | | L10V, T12K, I13V, L19I, M36I, N37D, R41K, L63P, I64L, I72IV | D |
| | CP076301982 | CP076301982 | HQ995443 | None | | | | L10V, I13V, G17E, M36I, R41K | D |
| | CP076301983 | CP076301983 | HQ995444 | None | | | | I13V, M36I, R41K, Q61D, I62V, L63P, I64V, E65D, K70R, I72T | D |
| | CP076301986 | CP076301986 | HQ995446 | None | | | | L10I, T12TS, I13V, M36I, N37D, R41K, D60E, I62V, L63P, I64V, E65D, I72V | D |
| | CP076301999 | CP076301999 | HQ995451 | None | | | | I13V, I15V, M36L, R41K, I64V | D |
| | CP076302018 | CP076302018 | HQ995454 | None | | | | T12S, I13V, I15V, E35ED, R41K, L63P, I64V | D |
| | CP076302894 | CP076302894 | HQ995467 | None | | | | I13V, R41K, I64V, H69Y, I72T, V77I | D |
| | CP076302897 | CP076302897 | HQ995469 | None | | | | L10V, I13V, M36I, R41K, L63C, I64V | D |
| | CP076302914 | CP076302914 | HQ995478 | None | | | | I13V, I15V, E35D, R41K, L63P, I64V, H69Y, K70R, I72V | D |
| | CP076302915 | CP076302915 | HQ995479 | None | | | | I13V, R41K, R57K, L63P, I64V, I72V | D |
| | CP076302927 | CP076302927 | HQ995484 | None | | | | I13V, M36I, R41K, L63LP, I64V | D |
| | CP076302933 | CP076302933 | HQ995489 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69HY, V77I | D |
| | CP076302934 | CP076302934 | HQ995490 | None | | | | I13V, R41K, L63P, K70R | D |
| Kasang (2011) | 28733 | 28733 | HM572334 | None | | | | I13V, R41K, L63T, I64L, V82I | D |
| | 32649 | 32649 | HM572340 | None | | | | I13V, R41K, L63Q, I64V, H69Y, I72T, V77I | D |
| | 25354 | 25354 | HM572341 | None | | | V11I | I13V, R41K, L63LP, I64V, V77I | D |
| | 32638 | 32638 | HM572344 | None | | | | L10V, I13V, M36I, R41K, L63P, H69Y | D |
| | 17199 | 17199 | HM572345 | None | | | | I13V, I15V, L19I, M36I, R41K, L63T, I64V, E65D | D |
| | 2028 | 2028 | HM572346 | None | | | | I13V, N37S, R41K, I62V, L63S, I64V, E65D, V77I | D |
| | 3318 | 3318 | HM572347 | None | | | | I13V, M36I, R41K, D60E, I62V, L63P, I64V, I72M | D |
| | 2035 | 2035 | HM572348 | None | | | | I13V, M36I, R41K, K43KR, L63Q, I64V | D |
| | 17184 | 17184 | HM572350 | None | | | | I13V, M36I, R41K, L63P, I64V | D |
| | 32648 | 32648 | HM572351 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, L63H, I64V, E65D | D |
| | 17193 | 17193 | HM572354 | None | | | | L10V, T12I, I13V, G16E, M36I, N37T, P39S, R41K, L63C, I64V | D |
| | 22115 | 22115 | HM572356 | None | | | | I13V, L33LV, M36MI, R41K, I64V, H69KQ, I72V | D |
| | 2024 | 2024 | HM572357 | None | | | | I13V, K20R, M36I, R41K, I62V, L63T, I64IV, E65D | D |
| | 17195 | 17195 | HM572359 | None | | | | I13V, R41K, L63T, I64L, V82I | D |
| | 32650 | 32650 | HM572361 | None | | | | T12TA, I13V, K14KR, K20R, M36I, N37D, R41K, L63C, I64V, H69Y | D |
| | 3316 | 3316 | HM572362 | None | | | | I13V, I15V, R41K, I64V | D |
| | 17196 | 17196 | HM572364 | None | | | | I13V, G16E, E35D, M36I, R41K, K45KR, L63AV, I64V, E65D, H69HY, K70KR, I72IT | D |
| | 1332 | 1332 | HM572384 | None | | | | T12E, I13V, M36I, G40GE, R41K, I64V, E65EK, H69K, R87RK | D |
| Ndembi (2011) | NTCPS727 | NTCPS727 | HQ702619 | None | | | | I13V, M36I, N37T, R41K, I64V | D |
| | NTCPS723 | NTCPS723 | HQ702623 | None | | | | T12A, I13V, M36I, R41K, L63P, I64V, I72V | D |
| | NTCPS722 | NTCPS722 | HQ702624 | None | | | | I13V, K14R, M36I, N37D, R41K, L63P, I64V | D |
| | NTCPS721 | NTCPS721 | HQ702625 | None | | | | I13V, M36I, R41K, I64V | D |
| | AICPS430 | AICPS430 | HQ702636 | None | | | | I13V, M36I, R41K | D |
| | AICPS437 | AICPS437 | HQ702637 | None | | | | I13V, K14N, R41K, I64V, E65D | D |
| | AICPS339 | AICPS339 | HQ702643 | None | | | | L10V, I13V, R41K, L63T, I64V, E65D | D |
| | AICPS269 | AICPS269 | HQ702646 | None | | | L33I | I13V, M36I, R41K, I64V, K70R | D |
| | NTCPS735 | NTCPS735 | HQ702647 | None | | | | I13V, G16E, M36I, R41K | D |
| | AICPS181 | AICPS181 | HQ702658 | None | | | | I13V, M36I, R41K, I62V, I64V | D |
| | NTCPS704 | NTCPS704 | HQ702666 | None | | | | I13V, K14R, M36I, R41K, Q61E, I64V | D |
| | AICPS337 | AICPS337 | HQ702667 | None | | | | L10V, I13V, I15V, M36I, R41K, I64V, C67Y | D |
| | AICPS033 | AICPS033 | HQ702668 | None | | | | T12S, I13V, I15V, L19I, K20T, R41K, L63P, I64V, I72V, V77I | D |
| | AICPS108 | AICPS108 | HQ702674 | None | | | | I13V, R41K, R57K, D60E, L63P, I64V | D |
| | AICPS008 | AICPS008 | HQ702679 | None | | | | I13V, R41K, R57K, D60E, L63P, I64V, H69Y | D |
| | AICPS034 | AICPS034 | HQ702681 | None | | | | I13V, R41K, L63S, I64V, E65D | D |
| | UGNTC713 | UGNTC713 | HQ702683 | None | | | | I13V, M36I, R41K, I64V, H69Y | D |
| Ng (2011) | HM091 | HM091 | JN029803 | None | | | | I13V, G16E, M36I, N37D, I62V, L63S, I64V, E65D | D |
| Rolland (2011) | 2495 | consensus_2495 | JF320054 | None | | | | I13V, R41K, L63P, V77I | D |
| Sanabani (2011) | BR1067 | BR1067 | JN692456 | None | | | | I13V, M36I, R57K, Q61N, L63P | D |
| Truong (2011) | 05002256 | 05002256 | | None | | | | L10I, I13V, G16E, R41K, L63ST, I64V, E65D | D |
| van Zyl (2011) | A26 | A26 | JN638154 | None | | | | T12P, I13V, M36I, R41K, L63P, I64V | D |
| Avila-Rios (2012) | B000M90TS9 | B000M90TS9 | KC168115 | None | | | | T12S, I13V, G16E, L19V, K20R, M36I, R57K, L63S, I64V, E65D, I72V | D |
| | M200M6C8O1 | M200M6C8O1 | KC169255 | None | | | | I13V, N37H, R41K, R57RK, I62IV, L63PS, A71AV, V77I, I93L | D |
| | MF00MB0PUE | MF00MB0PUE | KC169304 | None | | | | L10V, T12I, I13V, R41K, L63P | D |
| | O000M82MUC | O000M82MUC | KC169410 | None | | | | I13V, M36MI, R41K, Q61QE, L63P, I72IV | D |
| | S000MM8MV6 | S000MM8MV6 | KC169618 | None | | | | T12P, I13V, M36MI, N37NY, R41K, R57RK, L63P, V77I, I93L | D |
| | DA00MJCQWA | DA00MJCQWA | KC168439 | None | | | | I13V, N37D, D60E, L63P | D |
| | E000M_4KSG | E000M_4KSG | KC168516 | None | | | | I13V, K20R, M36I, R57K, L63APS, I64IV, E65ED, H69R, K70T | D |
| | E000M61ISR | E000M61ISR | KC168527 | None | | | | T12TS, I13V, G16E, M36I, P39S, R41K, K45R, I62V, L63S, I64V, E65D, T91V | D |
| Chen (2012) | YN09DH0134 | YN09DH0134 | JQ658593 | None | | | | T12S, I13V, K14R, I15V, L19I, M36V, R41K, I62V, L63P, A71V, I93L | D |
| | YN10DH0096 | YN10DH0096 | JQ658717 | None | | | | T12S, I13V, K14R, I15V, L19I, M36MI, R41RK, K45KR, D60DE, I62IV, L63P, I64IL, H69HKNQ, K70KR, A71AV, L89LM, I93L | D |
| De Gascun (2012) | IRL14593 | IRL14593 | JN622302 | None | | | | I13V, R41K, D60DE, L63P, H69HY, K70KR, V77VI | D |
| | IRL17894 | IRL17894 | JN622303 | None | | | | T12TP, I13V, K14R, G16E, N37NS, R41K, L63H, I64V | D |
| | IRL32980 | IRL32980 | JN622307 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | IRL32981 | IRL32981 | JN622308 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | IRL19192 | IRL19192 | JN622358 | None | | | | I13V, L19V, R41K, I62V, L63P, I64L, H69K, L89M | D |
| Delwart (2012) | 479-7344-2 | 479-7344-2 | JN215100 | None | | | | L10V, I13V, M36I, K45R, L63P, I64L, V77I, I93L | D |
| Hassan (2012) | RS09000853 | RS09000853 | HQ441598 | None | | | | T12K, I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69C | D |
| | RS09000858 | RS09000858 | HQ441603 | None | | | | L10V, I13V, M36I, N37D, R41K, I64V, H69Y | D |
| | RS09000876 | RS09000876 | HQ441621 | None | | | | I13V, G16E, R41K, L63H, I64V, E65ED, H69HR, K70KR, I72IV | D |
| | RS09000877 | RS09000877 | HQ441622 | None | | | | I13V, R41K, R57RK, D60E, I64V, H69H*QY, V77I | D |
| | RS09000878 | RS09000878 | HQ441623 | None | | | | I13V, R41K, L63P, K70R | D |
| | RS09000909 | RS09000909 | HQ441654 | None | | | | I13V, K20R, R41K, L63P, H69Y, V77I | D |
| | RS09000910 | RS09000910 | HQ441655 | None | | | | I13V, R41K, D60E, I64V, V77I | D |
| | RS09000920 | RS09000920 | HQ441664 | None | | | | I13V, L19I, R41K, L63P, H69Y, I72T, V77I | D |
| | RS09000921 | RS09000921 | HQ441665 | None | | | | I13V, K20R, M36I, N37D, R41K, I64V | D |
| | RS09000922 | RS09000922 | HQ441666 | None | | | | I13V, R41K, L63P | D |
| | RS09000935 | RS09000935 | HQ441677 | None | | | | L10V, T12TK, I13V, M36I, R41K, D60E, L63P | D |
| | RS09000949 | RS09000949 | HQ441691 | None | | | | I13V, R41K, L63P, I64V, E65D, K70KR, V77I | D |
| | RS09000981 | RS09000981 | HQ441716 | None | | | | I13V, M36I, R41K, K45KR, L63P, I64V, E65D, I72IV | D |
| | RS11000235 | RS11000235 | JQ698340 | None | | | | I13V, M36I, R41K, K45KR, D60E, I62V, L63Q, I64V, H69Y | D |
| | RS11000246 | RS11000246 | JQ698346 | None | | | | I13V, K14R, L19I, L33V, M36I, R41K, I64V | D |
| | RS11000261 | RS11000261 | JQ698358 | None | | | | I13V, L33V, M36I, R41K, L63P, I64V, H69Y | D |
| | RS11000282 | RS11000282 | JQ698372 | None | | | | I13V, L33V, P39T, R41K, L63R, I64V, K70I, I72T | D |
| | RS11000291 | RS11000291 | JQ698378 | None | | | | L10V, I13V, R41K, Q61QE, L63AP, I72EV | D |
| | RS11000294 | RS11000294 | JQ698381 | None | | | L33F | I13V, G16E, L19LP, M36I, N37D, R41K, L63Q, I64V, K70KR, V75I | D |
| | RS11000303 | RS11000303 | JQ698388 | None | | | | I13V, M36I, N37S, R41K, I62IV, L63H, I64V | D |
| | RS11000305 | RS11000305 | JQ698390 | None | | | | I13V, K14R, I15V, M36I, N37D, R41K, I62V, L63H | D |
| | RS11000306 | RS11000306 | JQ698391 | None | | | | I13V, R57K, L63P, A71T, I72V, V77I | D |
| | RS11000327 | RS11000327 | JQ698404 | None | | | | L10I, I13V, R41K, L63S, I64V, K70KR, I72LM, V77I | D |
| | RS11000333 | RS11000333 | JQ698408 | None | | | | I13V, R41K, L63P, I64IL | D |
| | RS11000359 | RS11000359 | JQ698426 | None | | | | I13V, M36I, R41K, I62V, L63P, I64V, H69Y, I72IT | D |
| Karlsson (2012) | SE_48 | SE_48 | JQ698699 | None | | | | I13V, E35D, N37ND, L63P, I64V, K70R | D |
| | SE_82 | SE_82 | JQ698720 | None | | | Q58E | I13V, R41K, D60E, I62V, L63T, I64V, E65D, V77I, V82I | D |
| | SE_107 | SE_107 | JQ698741 | None | | | | I13V, K20KR, L33V, R41K, I64V, I72IV | D |
| | SE_187 | SE_187 | JQ698795 | None | | | | I13V, R41K, I62V, L63S, I64V, E65D | D |
| | SE_203 | SE_203 | JQ698808 | None | | | L33F | I13V, M36I, R41K, I62V, I64V, C67CS | D |
| | SE_204 | SE_204 | JQ698809 | None | | | | I13V, M36I, N37S, R41K, I64V | D |
| | SE_209 | SE_209 | JQ698814 | None | | | | L10I, I13V, I15V, G16E, E35N, M36I, N37D, R41K, K43R, I62V, L63Q, I64V, H69Q | D |
| | SE_265 | SE_265 | JQ698851 | None | | | | L10V, I13V, K14KR, G16GE, M36I, R41RK, I62V, L63N, I64V | D |
| Machado (2012) | CUPL0920 | CUPL0920 | HQ655353 | None | | | | I13V, R41K, D60E, L63P, H69Q, V77I | D |
| | CUPL0929 | CUPL0929 | HQ655362 | None | | | | I13V, R41K, L63P, H69Q | D |
| | CUPL0931 | CUPL0931 | HQ655364 | None | | | | L10V, I13V, G16A, M36I, R41K, H69Q | D |
| | CUPL1008 | CUPL1008 | HQ655385 | None | | | | I13V, R41K, L63P, H69Q | D |
| | CUPL1018 | CUPL1018 | HQ655395 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63S, I64V, H69Q, V75I | D |
| | CUPL1028 | CUPL1028 | HQ655405 | None | | | | L10I, I13V, K14R, I15V, G16E, E35D, M36I, N37S, R41K, I62R, L63P, H69Q | D |
| | CUPL1041 | CUPL1041 | JN000013 | None | | | | T12S, I13V, N37S, R41K, D60E, L63P, H69Q, V77I | D |
| | CUPL1054 | CUPL1054 | JN000026 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, G49E, I62V, L63S, H69Q | D |
| | CUPL1067 | CUPL1067 | JN000039 | None | | | | I13V, E35D, M36I, R41K, D60E, L63P, H69Q | D |
| | CUPL1084 | CUPL1084 | JN000056 | None | | | | I13V, L19I, R41K, L63P, H69Q, A71T | D |
| | CUPL1101 | CUPL1101 | JX194180 | None | | | | T12S, I13V, N37S, R41K, D60E, L63P | D |
| | CUPL1105 | CUPL1105 | JX194184 | None | | | | I13V, G16GE, M36I, R41K, L63P, H69Q | D |
| Nazziwa (2012) | 1023620 | 1023620 | JX498972 | None | | | | L10V, I13V, I15V, E35D, M36I, N37S, R41K, K45R, R57K, L63Q, I64V | D |
| | 1005501 | 1005501 | JX498974 | None | | | | I13V, I15V, M36I, N37D, P39L, R41K, L63Q, I64V, E65D | D |
| | 3036401 | 3036401 | JX498975 | None | | | | I13V, L33V, M36I, R41K, L63Q, I64V, E65D | D |
| | 3065402 | 3065402 | JX498977 | None | | | | I13V, P39A, R41K, D60E, L63P, I64V, V77I | D |
| | 3053501 | 3053501 | JX498979 | None | | | | I13V, M36I, R41K, L63Q, I64V | D |
| | 3111130 | 3111130 | JX498980 | None | | | | I13V, K20R, M36I, N37T, R41K, I62V, L63P, I64V | D |
| | 3153701 | 3153701 | JX498981 | None | | | | I13V, K20R, M36I, N37D, R41K, L63Q, I64V, E65D, I72V | D |
| | 3111801 | 3111801 | JX498984 | None | | | | I13V, K20R, M36I, N37K, R41K, I64V, K70R | D |
| | 3037102 | 3037102 | JX498991 | None | | | | I13V, G17E, K20R, L33V, R41K, I64V | D |
| | 3096301 | 3096301 | JX498996 | None | | | | I13V, G16E, R41K, L63N, I64V, E65D, H69C, I72V, V77I | D |
| | 5069102 | 5069102 | JX499003 | None | | | | I3L, L10I, I13V, R41K, K45R, L63AD, A71T, I72E, V77I | D |
| | 5120902 | 5120902 | JX499007 | None | | | | I13V, M36I, R41K, D60E, I64V | D |
| | 6307501 | 6307501 | JX499011 | None | | | | I13V, R41K, L63P, H69Q | D |
| | 6321430 | 6321430 | JX499013 | None | | | | I13V, M36I, R41K, I64V, K70R, V82I | D |
| | 7054101 | 7054101 | JX499015 | None | | | | I13V, I15V, M36I, R41K, I64V, H69Y | D |
| | 5136031 | 5136031 | JX499017 | None | | | | I13V, R41K, I64V, H69Y, I72V | D |
| Reynolds (2012) | B0565 | B0565-0 | JN652140 | None | | | | I13V, L19I, M36I, R41K, D60E, I62V, I64V, H69HY | D |
| | | B0565-1 | JN652171 | None | | | | I13V, L19I, M36I, R41K, D60E, I62V, L63LP, I64V, H69HY | D |
| | B0715 | B0715-0 | JN652141 | None | | | L33I | I13V, M36T, P39S, R41K, I62IV, L63LFPS, I64V | D |
| | | B0715-1 | JN652173 | None | | | L33I | I13V, M36T, P39S, R41K, L63LFPS, I64V | D |
| | B0717 | B0717-0 | JN652142 | None | | | | I13V, R41K, L63H, I64V, K70T, I72V, V77I | D |
| | | B0717-1 | JN652174 | None | | | | I13V, R41K, L63H, I64V, K70T, I72V, V77I | D |
| | C0152 | C0152-0 | JN652143 | None | | | | I13V, M36I, N37NS, R41K, I64V, I72IV | D |
| | | C0152-1 | JN652176 | None | | | | I13V, M36I, R41K, I64V, I72IV | D |
| | C0717 | C0717-1 | JN652177 | None | | | | I13V, M36I, R41K, L63Q, I72V | D |
| | D0397 | D0397-0 | JN652146 | None | | | | I13V, L33V, R41K, K43KR, R57K, L63S, I64V, E65D | D |
| | | D0397-1 | JN652179 | None | | | | I13V, L33V, R41K, R57K, L63S, I64V, E65D | D |
| | D0710 | D0710-0 | JN652147 | None | | | | I13V, R41K, L63P, H69Q, V77VI | D |
| | | D0710-1 | JN652180 | None | | | | I13V, R41K, L63P, H69Q, V77I | D |
| | D0761 | D0761-0 | JN652148 | None | | | | L10V, T12TA, I13V, M36I, R41K, I64V | D |
| | | D0761-1 | JN652181 | None | | | | L10V, I13V, M36I, R41K, I64V | D |
| | E0090 | E0090-0 | JN652149 | None | | | | I13V, M36I, R41K, L63P, I64V, H69Y, I72V | D |
| | | E0090-1 | JN652182 | None | | | | I13V, M36I, R41K, K45R, L63P, I64V, H69Y, I72V | D |
| | F0703 | F0703-0 | JN652155 | None | | | | L10IV, I13V, K14KR, E35D, M36I, R41K, I64V, H69Y | D |
| | | F0703-1 | JN652191 | None | | | | L10V, I13V, K14KR, E35D, M36I, R41K, I64V, H69HY | D |
| | F0719 | F0719-0 | JN652156 | None | | | V11VI | L10I, I13V, E35D, M36I, R41K, K45KR, R57RK, L63X, I64IMV, L89LM, L97LI | D |
| | | F0719-1 | JN652192 | None | | | V11I | L10I, I13V, E35D, M36I, R41K, L63Q, I64V | D |
| | F0785 | F0785-0 | JN652157 | None | | | L10LF | I13V, M36MI, R41K, D60E, I62V, L63P, I64V, K70R | D |
| | G0715 | G0715-0 | JN652158 | None | | | | L10V, I13V, R41K, R57RK, L63LV, I64V, I72IV, T74S, V77I | D |
| | | G0715-1 | JN652194 | None | | | | L10V, I13V, Q18QR, R41K, R57K, I64V, T74S, V77I | D |
| | G0772 | G0772-0 | JN652159 | None | | | | L10I, V11L, T12P, I13V, L19I, E35D, M36I, R41K, L63*PQS, I64V, I72V | D |
| | | G0772-1 | JN652195 | None | | | | L10I, V11L, T12P, I13V, L19I, E35D, M36I, R41K, L63Q, I64V, I72V | D |
| | H0710 | H0710-0 | JN652160 | None | | | | L10IV, I13V, K14KR, G16GE, M36I, R41K, I64IV, I72V, L89LM | D |
| | | H0710-1 | JN652197 | None | | | | L10IV, I13V, K14KR, M36I, R41K, I64IV, I72V | D |
| | H0756 | H0756-0 | JN652161 | None | | | | I13V, M36I, R41K, L63PS, I64V | D |
| | J0594 | J0594-0 | JN652163 | None | | | | I13V, M36I, R41K, K45KR, I64V, I72V | D |
| | | J0594-1 | JN652199 | None | | | | I13V, M36I, R41K, K45R, I64V, I72V | D |
| | J7221 | J7221-0 | JN652165 | None | | | | I13V, I15V, M36I, R41K, I62V, L63H, I64V, K70R | D |
| | | J7221-1 | JN652201 | None | | | | I13V, I15V, M36I, R41K, I62V, L63H, I64V, K70R | D |
| | B0708 | B0708-1 | JN652172 | None | | | | L10I, I13V, G16E, M36I, R41K, L63V | D |
| | F0406 | F0406-1 | JN652189 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | F0701 | F0701-1 | JN652190 | None | | | | I13V, K20R, M36I, R41K | D |
| Sigaloff (2012) | KEKSN411 | KEKSN411 | JN628476 | None | | | | I13V, G17E, K20R, M36I, R41K | D |
| | KELKN210 | KELKN210 | JN628484 | None | | | | L10V, I13V, I15V, M36L, R41K, L63Q, I64V | D |
| | KELKN267 | KELKN267 | JN628525 | None | | | | I13V, R41K, K45R, I64V, C67G, H69K, I85T, N98D | D |
| Ssemwanga (2012) | RCC_TDR_356892 | RCC_TDR_356892 | JQ266020 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | RCC_TDR_358745 | RCC_TDR_358745 | JQ266021 | None | | | | L10I, I13V, M36I, R41K, L63Q, I64V, I72V | D |
| | RCC_TDR_359881 | RCC_TDR_359881 | JQ266022 | None | | | | I13V, I15V, E35D, M36I, R41K, L63T, I64V, E65D | D |
| | RCC_TDR_480133 | RCC_TDR_480133 | JQ266023 | None | | | | I13V, K20R, L33V, N37T, R41K, I64V, E65D | D |
| | RCC_TDR_481029 | RCC_TDR_481029 | JQ266024 | None | | | | I13V, L19I, M36I, R41K, D60E, I62V, L63P, H69Y, I72T | D |
| | RCC_TDR_190330 | RCC_TDR_190330 | JQ266027 | None | | | | I13V, K20R, L33V, N37T, R41K, I64V, E65D | D |
| | RCC_TDR_359885 | RCC_TDR_359885 | JQ266030 | None | | | | I13V, I15V, E35D, M36I, R41K, L63T, I64V, E65D | D |
| | RCC_TDR_480631 | RCC_TDR_480631 | JQ266033 | None | | | | I13V, L19I, M36I, R41K, Q61N, L63Q, I64V, E65D, H69Y, I72T | D |
| | RCC_TDR_805324 | RCC_TDR_805324 | JQ266035 | None | | | | I13V, M36I, R41K, I64V | D |
| | RCC_TDR_358027 | RCC_TDR_358027 | JQ266038 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V, H69Y, I72V | D |
| | RCC_TDR_482987 | RCC_TDR_482987 | JQ266042 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | RCC_TDR_480245 | RCC_TDR_480245 | JQ266047 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC_TDR_483451 | RCC_TDR_483451 | JQ266048 | None | | | | I13V, K20R, M36I, R41K, L63Q, I64V, E65D, V75I | D |
| | RCC_TDR_483515 | RCC_TDR_483515 | JQ266050 | None | | | | I13V, L19I, M36I, R41K, Q61H, I64V, H69Y, I72T, V75I | D |
| | RCC_TDR_483771 | RCC_TDR_483771 | JQ266051 | None | | | | I13V, K20R, M36I, R41K, I64V | D |
| | RCC_TDR_483963 | RCC_TDR_483963 | JQ266052 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V, H69Y | D |
| | RCC_TDR_802510 | RCC_TDR_802510 | JQ266053 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC_TDR_359989 | RCC_TDR_359989 | JQ266063 | None | | | | T12I, I13V, E35D, M36I, R41K, L63M, H69K, L89M | D |
| | RCC_TDR_482650 | RCC_TDR_482650 | JQ266066 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC_TDR_480977 | RCC_TDR_480977 | JQ266067 | None | | | | I13V, R41K, I64V | D |
| | RCC_TDR_480146 | RCC_TDR_480146 | JQ266072 | None | | | | I13V, K20R, M36I, R41K, H69K | D |
| | RCC-TDR-359889 | RCC-TDR-359889 | JQ266073 | None | | | | I13V, K20R, M36I, R41K, W42W*, G51GE, L63A, I64V | D |
| | RCC-TDR-480431 | RCC-TDR-480431 | JQ266075 | None | | | | I13V, M36I, R41K, L63P, H69Y, I72V | D |
| | RCC_TDR-483620 | RCC_TDR-483620 | JQ266077 | None | | | | I13V, M36I, N37D, R41K, D60E, I64V | D |
| | RCC-TDR-359822 | RCC-TDR-359822 | JQ266078 | None | | | | I13V, R41K, L63P, I64L | D |
| | RCC_TDR_356261 | RCC_TDR_356261 | JQ266080 | None | | | | I13V, K20R, M36I, R41K, H69K | D |
| | RCC-TDR-483664 | RCC-TDR-483664 | JQ266081 | None | | | | I13V, M36I, R41K, I64V | D |
| | RCC_TDR-820974 | RCC_TDR-820974 | JQ266083 | None | | | Q58E | I13V, K14R, L33V, R41K, I64V, E65D | D |
| | RCC_TDR-480124 | RCC_TDR-480124 | JQ266087 | None | | | | I13V, E35D, R57K, L63P, I64V, H69Y, V77I | D |
| | RCC_TDR-353759 | RCC_TDR-353759 | JQ266089 | None | | | | I13V, M36I, R41K, I62V, L63S, I64V, E65D, H69Y | D |
| Ssemwanga (2012) | 1204HR | 1204HR | JF800191 | None | | | | I13V, I15V, M36I, R41K, I64V | D |
| | 1420HR | 1420HR | JF800192 | None | | | | I13V, I15V, E35D, M36I, R41K, L63Q, I64V, I72V, V77I | D |
| | 3204HR | 3204HR | JF800197 | None | | | | I13V, M36I, R41K, Q61N, L63S, I64V, E65D | D |
| | 3981HR | 3981HR | JF800200 | None | | | | I13V, K20R, E35D, M36I, R41N, I62V, I64V, H69Y | D |
| | 5832HR | 5832HR | JF800204 | None | | | | I13V, G16E, N37S, R41K, L63H, I64L, I72V | D |
| | 6601HR | 6601HR | JF800208 | None | | | | I13V, K20I, M36I, P39T, R41K, I64V, T91A | D |
| | 7498HR | 7498HR | JF800212 | None | | | | I13V, M36I, R41K, L63A, I64V | D |
| | 0322HR | 0322HR | JF800213 | None | | | | I13V, M36I, R41K, L63Q, I64V, K70R | D |
| | 7177HR | 7177HR | JF800219 | None | | | | I13V, K20R, M36I, N37D, R41K, L63P, I64V, E65D, K70R, I72V | D |
| | 2946HR | 2946HR | JF800223 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, D60E, L63S, I64L, H69K, L89M | D |
| | 5443HR | 5443HR | JF800226 | None | | | | I13V, M36I, R41K, R57K, D60E, L63P, I64V | D |
| Yang (2012) | KN-14 | KN-14 | JQ616915 | None | | | | T12S, I13V, M36I, R41K, I62V, L63S, I64V | D |
| | KN-97 | KN-97 | JQ616926 | None | | | | T12S, I13V, R41K, L63P, C67S, A71AT, V77I | D |
| | KN-39 | KN-39 | JQ616934 | None | | | | T12S, I13V, L33V, P39T, R41K, D60E, I62V, L63P, H69Y | D |
| | KN-20 | KN-20 | JQ616941 | None | | | | T12S, I13V, I15V, M36I, R41K, L63T, I64V | D |
| | KEN-32T | KEN-32T | | None | | | | R8P, V11F, I13V, G16E, M36I, R41K, L63H, K70KR, I72V | D |
| | KEN-11T | KEN-11T | | None | | | | I13V, R41K, L63P, I64L, V77I | D |
| Alencar (2013) | MG2-0017 | MG2-0017 | JQ238023 | None | | | | L10V, I13V, I15V, Q18M, M36I, N37D, R41K, L63C | D |
| | SP2-0018 | SP2-0018 | JQ238044 | None | | | | T4H, I13V, K14KR, K20R, M36I, R41K | D |
| | SP2-0036 | SP2-0036 | JQ238064 | None | | | | I13V, M36I, R41K, Q61D, I62IV, L63P, I64V, C67CHRY | D |
| Frentz (2013) | EHR-00912 | EHR-00912 | JX299555 | None | | | | L10V, I13V, I15IV, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| | EHR-18561 | EHR-18561 | JX299844 | None | | | | I13V, R41K, D60E, L63P, I64V, C67E, V77I | D |
| | EHR-25464 | EHR-25464 | JX299982 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | EHR-27129 | EHR-27129 | JX300011 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, L89M | D |
| | EHR-40586 | EHR-40586 | JX300226 | None | | | | L10I, I13V, I15V, E35D, P39Q, R41K, I62V, L63P, I93L | D |
| | EHR-45609 | EHR-45609 | JX300299 | None | | | | I13V, L33V, N37NS, R41K, L63HQ, I64V | D |
| | EHR-65454 | EHR-65454 | JX300642 | None | | | | L10I, I13V, L33LV, M36I, I62V, L63S, I64V, C67E, I72L | D |
| | EHR-71598 | EHR-71598 | JX300747 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, P39T, R41K, L63T, E65D, I72T, L89M | D |
| | EHR-76782 | EHR-76782 | JX300855 | None | | | | L10V, T12I, I13V, I15V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, I62V, L63T, E65D, I72T, T74TA, L89M | D |
| | EHR-87997 | EHR-87997 | JX301040 | None | | | | I13V, M36I, R41K, I62V, I64V, K70R | D |
| | EHR-92753 | EHR-92753 | JX301085 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69Q, A71T | D |
| | EHR-94228 | EHR-94228 | JX301102 | None | | | | I13V, I15V, L19LI, E35D, M36I, R41K, R57K, L63T, E65D, I72T, V82VI, L89M | D |
| Temereanca (2013) | SR16 | SR16 | JX966491 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, P39S, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | SR20 | SR20 | JX966497 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63T, E65D, I72T, L89M, I93M | D |
| | SR39 | SR39 | JX966514 | None | | | | L10I, I13V, I15V, G16E, E35D, M36I, P39T, R41K, R57K, L63T, E65D, I72T, L89M | D |
| | SR42 | SR42 | JX966518 | None | | | | L10V, I13V, I15V, K20R, E35D, M36I, R41K, I62V, L63N, L89M, Q92K | D |
| | SR6 | SR6 | JX966526 | None | | | | L10I, T12K, I13V, I15V, K20I, E35D, M36I, R41K, R57K, L63T, E65D, I72V, T74S, L89M | D |
| | SR60 | SR60 | JX966527 | None | | | | L10V, I13V, I15V, G16E, K20R, M36I, R41K, R57K, L63T, E65D, T74S, V82I, L89M | D |
| | SR65 | SR65 | JX966531 | None | | | | L10V, I13V, I15V, G16E, K20R, E35D, M36I, R41K, K43R, R57K, L63T, E65D, I72T | D |