| Author (yr) |
Patient |
Isolate |
Acc# |
PIs |
Wks | PIMajorDRMs |
PIMinorDRMs |
OtherMut | Subtype |
| Cornelissen (2000) | MC96CM25 | MC96CM25 | AF212284 | None | | | L89V | I13V, K14R, K20I, M36I, N37S, R41K, L63P, H69K | CRF02_AG |
| Holguin (2000) | AH-HC13 | HolgHC13 | AF125293 | None | | | | I13V, K14R, I15V, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | AH-HC12 | HolgHC12 | AF125292 | None | | | | I13A, K14R, K20I, E35A, M36I, R41K, L63P, H69K, L89M, N98I | CRF02_AG |
| Si-Mohamed (2000) | AS_NZI | AS_NZI | AF199280 | None | | | | I13V, L19F, E35D, M36I, R41K, L63P, H69K, K70R, V77I, L89M | CRF02_AG |
| Vergne (2000) | LVMP1026 | LVMP1026 | AJ286953 | None | | | | I13V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | LV47HALD | LV47HALD | AJ286993 | None | | | | I13V, K14R, L19S, K20M, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| Balotta (2001) | CB-1092 | CB-1092 | AF295289 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, I64IM, H69K, L89M | CRF02_AG |
| Carr (2001) | CM52885 | CM52885 | AF377954 | None | | | | I13V, K20I, M36I, P39M, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| Eshleman (2001) | SE816 | SE816 | AF388160 | None | | | | L10V, I13V, K20R, M36I, R41K, L63P | CRF02_AG |
| Fonjungo (2002) | CM233 | CM233 | AY051266 | None | | | | I13V, K14R, G16E, K20I, E35D, M36I, R41K, K43R, L63P, H69K, L89M, I93L | CRF02_AG |
| | CM228 | CM228 | AY051263 | None | | | | T12K, I13V, G16E, K20I, E35D, M36I, N37T, R41K, L63P, H69K, K70R, L89M, I93L | CRF02_AG |
| | CM170 | CM170 | AY051250 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, K70R, L89M, I93L | CRF02_AG |
| | CM121 | CM121 | AY051229 | None | | | | I13V, K14R, K20I, M36I, N37T, R41K, L63P, I64M, H69K, L89M, I93L | CRF02_AG |
| | CM111 | CM111 | AY051222 | None | | | | V11F, I13V, K14T, L19P, K20I, M36I, R41K, L63P, H69K, L89M, I93L | CRF02_AG |
| Gibb (2002) | DMG21 | 21_w0 | | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Holguin (2002) | AH_R3594 | AH_R3594 | AF354035 | None | | | | I13V, K14R, G17E, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | AH_G7019 | AH_G7019 | AF354027 | None | | | | Q2S, I13A, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93M | CRF02_AG |
| | AH_19770 | AH_19770 | AF354007 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69K, I72M, L89M | CRF02_AG |
| | AH_17749 | AH_17749 | AF354006 | None | | | | I13V, G17E, K20I, E21K, M36I, N37K, R41K, L63P, I64V, H69K, K70R, L89M | CRF02_AG |
| | AH_18455 | AH_18455 | AF354003 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, I72M, L89M | CRF02_AG |
| Pandrea (2002) | IP_97CIRMF65 | 97CIRMF65 | AY140630 | None | | | | I13V, K14R, K20I, M36I, N37S, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | IP_97CIRMF43 | 97CIRMF43 | AY140640 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | IP_97CIRMF04 | 97CIRMF04 | AY140642 | None | | | | I13V, K14R, I15V, G16E, K20I, E35D, M36I, R41K, K43R, L63P, H69K, K70R, L89M | CRF02_AG |
| | IP_97CIRMF32 | 97CIRMF32 | AY140645 | None | | | | T12A, I13V, K14R, I15V, Q18K, K20I, M36I, N37D, R41K, L63P, C67E, H69K, V82I, L89I | CRF02_AG |
| Tebit (2002) | 99CMLB9 | 99CMLB9 | AF355306 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Vergne (2002) | LVLBV30_10 | LVLBV30_10 | AJ313402 | None | | | V11I | I13A, K20I, M36I, R41K, I62V, L63P, H69K, L89M | CRF02_AG |
| | LVLBV15_01 | LVLBV15_01 | AJ313397 | None | | | | I13V, I15V, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Carrion (2003) | ECU41 | ECU41 | AY151001 | None | | | | I13V, K20I, M36I, N37S, R41K, L63P, H69K, L89M | CRF02_AG |
| | ECU42 | ECU42 | AY151002 | None | | | | I13V, K20I, M36I, N37S, R41K, L63P, H69K, L89M | CRF02_AG |
| Holguin (2003) | SP_LP9 | SP_LP9 | AF455607 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Huang (2003) | POC44951 | POC44951 | AF447831 | None | | | | I13V, K14R, K20I, E35D, M36I, N37E, L63P, H69K, L89M | CRF02_AG |
| Njouom (2003) | 31pro | 31pro | AY204329 | None | | | | I13A, I15V, K20I, M36IL, P39PS, R41K, L63P, H69K, L89M | CRF02_AG |
| Toni (2003) | TTDdp31 | TTDdp31 | AY207680 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | TTDdp45 | TTDdp45 | AY207691 | None | | | | T4P, L10I, I13V, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | TTDdp54 | TTDdp54 | AY207698 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | TTDpci141 | TTDpci141 | AY207744 | None | | | | I13V, K14R, K20I, M36I, R41K, K43KR, L63P, H69K, L89M | CRF02_AG |
| | TTDpci142 | TTDpci142 | AY207711 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | TTDpci159 | TTDpci159 | AY207727 | None | | | I50IS | I13A, I15IL, K20I, A22V, E35D, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| | TTDdp35 | TTDdp35 | AY207683 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Vergne (2003) | VL99SN125HPD | 99SN125 | AJ583712 | None | | | | L10I, T12A, I13V, E35D, M36I, R41K, K45R, L63P, H69K, K70R, L89M, T91I | CRF02_AG |
| | VL98SN71HPD | 98SN71 | AJ583724 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | VL99SN167HPD | 99SN167 | AJ583717 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | VL98SN1264SC | 98SN1264 | AJ583713 | None | | | | L10V, I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| Eshleman (2004) | ABB198 | ABB198 | AY444245 | None | | | | I13V, K20I, M36I, N37S, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| | ABB29 | ABB29 | AY444249 | None | | | | I13V, K20I, E34G, M36I, N37H, R41RK, L63P, I64M, H69K, K70E, L89M | CRF02_AG |
| | ABB53 | ABB53 | AY444252 | None | | | | I13V, K14R, K20I, E35D, M36I, N37D, R41K, L63P, G68E, H69R, I72IV, L89M | CRF02_AG |
| Kijak (2004) | 2162SA | 02CM.2162 | AY371129 | None | | | | T12A, I13V, K14R, K20I, M36I, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| | 4082STN | 02CM.4082 | AY371141 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Konings (2004) | KF_Pat52 | 00CM4665 | AY359734 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, G68E, H69R, L89M | CRF02_AG |
| | KF_Pat53 | 00CM4730 | AY359735 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | KF_Pat71 | 00CM4375 | AY359753 | None | | | | I13V, K14R, K20I, E35D, M36I, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | KF_Pat76 | 00CM2395 | AY359758 | None | | | | I13V, K20I, E35A, M36I, R41K, L63P, C67S, H69K, L89M | CRF02_AG |
| | KF_Pat118 | 02CM7539 | AY359800 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Snoeck (2004) | BE77 | BE77 | AY900960 | None | | | | I13V, K14R, L19P, K20I, E34ED, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Carr (2005) | 4082STN | 4082STN | AY847391 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 1188NG | 1188NG | AY847423 | None | | | | T12A, I13V, K14R, K20I, M36I, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| | 4419HAL | 4419HAL | AY847438 | None | | | | I13V, K20I, M36I, N37S, R41K, L63P, H69K, L89I | CRF02_AG |
| | 2476LE | 2476LE | AY847435 | None | | | | I13V, K14R, K20I, M36I, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | 2172SA | 2172SA | AY847424 | None | | | | T12A, I13V, K14R, K20I, M36I, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | 2391LE | 2391LE | AY847433 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Holguin (2005) | LP57 | 02_LP57 | AY248293 | None | | | | I3V, L10I, I13V, K14R, K20I, E35N, M36I, R41K, L63P, I64M, H69K, V82I, L89M | CRF02_AG |
| | 1649-00 | 00_1649-00 | AY248302 | None | | | | I13V, K14R, K20I, M36I, N37S, R41K, L63P, H69K, L89M | CRF02_AG |
| | 00062439 | 02_62439 | AY248313 | None | | | | I13V, K14R, G16E, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Non-B Workgroup (2005) | UK1523 | UK1523 | AY900808 | None | | | | I13V, K14R, K20I, E35N, M36I, R41K, R57K, L63P, H69K, K70R, L89M | CRF02_AG |
| | UK1555 | UK1555 | AY900810 | None | | | L89V | I13V, K20L, E35D, M36I, R41K, L63P, H69K | CRF02_AG |
| | PL38694 | 69336 | AY901092 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| Zeh (2005) | 99NG1063 | 99NG1063 | AY103316 | None | | | | L10V, T12K, I13V, G16E, K20I, M36I, P39T, R41K, L63P, H69K, K70R, L89M, I93L | CRF02_AG |
| | 99NG1133 | 99NG1133 | AY103320 | None | | | | I13A, K14R, K20I, E35D, M36I, R41K, K43R, L63P, H69K, K70R, L89M, I93L | CRF02_AG |
| | 99NG809 | 99NG809 | AY103351 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M, I93L | CRF02_AG |
| | 99NG811 | 99NG811 | AY103352 | None | | | | I13A, K14R, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L | CRF02_AG |
| | 99NG819 | 99NG819 | AY103353 | None | | | | I13V, K20I, M36I, N37S, R41K, L63P, G68E, H69R, K70R, L89M, I93L | CRF02_AG |
| | 99NG895 | 99NG895 | AY103360 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, K43R, L63P, H69K, L89I, I93L | CRF02_AG |
| Babic (2006) | DB_SI8427-04 | SI8427-04 | AJ971096 | None | | | | L10I, I13V, K14R, K20IM, M36T, R41K, L63P, C67F, H69K, L89I | CRF02_AG |
| | DB_SI1916-04 | SI1916-04 | AJ971271 | None | | | | I13V, K20I, E35D, M36I, P39PS, R41K, L63P, H69K, L89M | CRF02_AG |
| Chin (2006) | KRC4044 | 4044_0405 | DQ660478 | None | | | | L10I, I13V, K14R, I15V, L19P, K20I, M36I, N37D, R41K, K43R, Q61H, L63P, H69K, L89M | CRF02_AG |
| Koizumi (2006) | YK_04CM034 | YK_04CM034 | DQ461841 | None | | | | Q2P, I13V, G17E, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | YK_04CM043 | YK_04CM043 | DQ461846 | None | | | | L10P, G16E, E35D, M36I, N37D, L63P, H69K, K70R, L89M | CRF02_AG |
| | YK_04CM075 | YK_04CM075 | DQ461862 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | YK_04CM079 | YK_04CM079 | DQ461864 | None | | | | I13V, G17E, K20I, M36I, R41K, L63P, H69K, K70R, I72M, L89M | CRF02_AG |
| Lawrence (2006) | 02FR1 | 02FR1 | DQ251597 | None | | | | T12Q, I13V, K14R, G16E, K20I, E35D, M36I, L63P, H69K, L89M | CRF02_AG |
| | 02FR3 | 02FR3 | DQ251599 | None | | | | L10I, T12K, I13V, G16E, K20I, M36I, P39L, L63P, H69K, L89M | CRF02_AG |
| | 01FR5 | 01FR5 | DQ251601 | None | | | | T12Q, I13V, K14R, I15V, K20I, M36I, P39Q, L63P, H69K, L89M, T91X | CRF02_AG |
| | 02FR10 | 02FR10 | DQ251606 | None | | | | T12Q, I13V, K14R, K20I, E35D, M36I, L63P, H69K, L89M | CRF02_AG |
| | 02FR16 | 02FR16 | DQ251612 | None | | | | T12Q, I13V, K14R, I15V, K20I, E35D, M36I, P39L, L63P, H69K, L89M | CRF02_AG |
| | 02FR17 | 02FR17 | DQ251613 | None | | | | L5F, W6X, L10V, T12K, I13V, K14R, L19LP, K20I, L23P, M36I, N37D, L63P, H69K, L89M, L90F | CRF02_AG |
| | 00FR18 | 00FR18 | DQ251614 | None | | | | T12Q, I13V, K14R, K20I, E35D, M36I, L63P, H69K, L89M | CRF02_AG |
| | 97FR19 | 97FR19 | DQ251615 | None | | | | L10I, T12K, I13V, G16E, K20I, M36I, P39L, K45R, G49G*, L63P, H69K, L89M | CRF02_AG |
| | 01FR21 | 01FR21 | DQ251617 | None | | | | L10I, T12Q, I13V, K14R, K20I, M36I, N37E, L63P, I64M, H69K, L89M, I93V | CRF02_AG |
| | 03FR22 | 03FR22 | DQ251618 | None | | | | L10V, T12K, I13V, K20I, M36T, N37G, L63P, H69K, L89I, I93L | CRF02_AG |
| | 05FR24 | 05FR24 | DQ251620 | None | | | | T12A, I13A, K14R, L19F, K20I, M36I, N37D, R41K, L63P, H69K, L89I | CRF02_AG |
| | 05FR25 | 05FR25 | DQ251621 | None | | | | T12Q, I13V, K14R, G17E, K20I, E35ED, M36I, N37ND, K43KR, L63P, H69K, L89M | CRF02_AG |
| Ndongmo (2006) | CM31 | CBN_CM31 | DQ394114 | None | | | V11I | I13V, K14R, K20I, M36I, R41K, L63P, H69K, K70R, I72M, L89I, I93L | CRF02_AG |
| | CM79 | CBN_CM79 | DQ394122 | None | | | | I13V, G17E, K20I, M36I, L63P, I64L, H69K, K70R, L89M, I93L | CRF02_AG |
| | CM225 | CBN_CM225 | DQ394143 | None | | | | I13V, L19P, K20I, M36I, R41K, K45R, L63P, H69K, A71T, L89M, I93L | CRF02_AG |
| | CM279 | CBN_CM279 | DQ394154 | None | | | | I13V, K14R, L19I, K20I, M36I, R41K, L63P, I66V, H69K, L89M, I93L | CRF02_AG |
| | CM284 | CBN_CM284 | DQ394155 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, I64L, H69K, K70R, L89M, I93L | CRF02_AG |
| Njai (2006) | MP522 | 96CM.522 | AM279376 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| | MP1372 | 99CM.1372 | AM279395 | None | | | | L10I, I13V, K14R, K20I, E35D, M36I, R41K, L63P, C67E, H69K, V82I, L89M, I93V | CRF02_AG |
| Ojesina (2006) | AIO_DDJ013 | AIO_DDJ013 | DQ273924 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M, Q92K, I93M, G94V | CRF02_AG |
| | AIO_DDJ173 | AIO_DDJ173 | DQ273940 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, G68E, H69K, L89M | CRF02_AG |
| | AIO_DDJ174 | AIO_DDJ174 | DQ273941 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | AIO_DDJ192 | AIO_DDJ192 | DQ273931 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, C67E, H69K, V82I, L89M | CRF02_AG |
| | AIO_DDJ235 | AIO_DDJ235 | DQ273959 | None | | | | T12A, I13V, K14R, I15V, G16E, K20I, M36I, P39S, R41K, L63P, I64L, H69K, K70R, L89M | CRF02_AG |
| Razafindratsimandresy (2006) | RR_MAD-GP009 | MAD-GP009 | DQ345006 | None | | | V11VI | I13A, I15V, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Tebit (2006) | A395 | A395 | DQ682713 | None | | | | V11D, I13V, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | A675 | A675 | DQ682715 | None | | | | I13V, G16E, K20I, M36I, N37S, P39S, R41K, K43E, L63P, H69K, L89M | CRF02_AG |
| | A101 | A101 | DQ682716 | None | | | L33I | I13V, K14R, K20I, E34G, M36I, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | A696 | A696 | DQ682721 | None | | | | I13V, K14R, L19P, K20I, E35D, M36I, L63P, H69K, L89M | CRF02_AG |
| | D041 | D041 | DQ682738 | None | | | | I13V, K14I, K20I, E35D, M36I, N37D, R41K, R57K, L63P, H69K, K70R, N83Y, L89M | CRF02_AG |
| Vessiere (2006) | AV_M6128N | AV_M6128N | DQ297207 | None | | | | I13V, K14R, G17E, K20I, E35N, M36I, R41K, K43R, L63P, H69K, V77I, L89M | CRF02_AG |
| | AV_M6548N | AV_M6548N | DQ297208 | None | | | | L10V, I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70E, L89M | CRF02_AG |
| Vidal (2006) | NV_KP009 | 02.KP009 | AM041027 | None | | | | I13V, K14R, K20I, E35N, M36L, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| Derache (2007) | 1158 | 1158 | EF064449 | None | | | | I13V, K20I, M36I, L63P, C67H, H69K, L89M | CRF02_AG |
| | 1166 | 1166 | EF064454 | None | | | | I13A, K14R, G16E, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | 1171 | 1171 | EF064456 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | 1174 | 1174 | EF064459 | None | | | | I13V, K14R, I15L, K20I, M36I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | 1179 | 1179 | EF064464 | None | | | | L10I, T12A, I13A, I15V, L19P, K20I, M36I, R41K, L63P, C67Y, H69K, K70R, L89M | CRF02_AG |
| | 1193 | 1193 | EF064469 | None | | | | L10I, T12A, I13V, L19P, K20I, M36I, L63P, H69K, L89M | CRF02_AG |
| | 1215 | 1215 | EF064482 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 1219 | 1219 | EF064483 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 1227 | 1227 | EF064486 | None | | | | I13A, K14R, I15L, K20I, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | 1228 | 1228 | EF064487 | None | | | | I13V, K14R, G16E, K20I, M36I, R41K, L63P, I64L, H69K, K70R, L89M | CRF02_AG |
| | 1234 | 1234 | EF064489 | None | | | L89V | I13V, K14R, K20I, M36I, R41K, L63P, H69K, K70R, I72V, V82I | CRF02_AG |
| | 1237 | 1237 | EF064490 | None | | | | I13A, L19P, K20I, A22V, M36I, N37D, R41K, L63P, H69K, L89I | CRF02_AG |
| | 1245 | 1245 | EF064496 | None | | | | I13V, K14R, K20V, M36I, R41K, L63P, I64M, H69K, L89M | CRF02_AG |
| | 1247 | 1247 | EF064498 | None | | | | L10V, I13V, K14R, G16E, K20I, M36I, R41K, R57K, L63P, H69K, L89M | CRF02_AG |
| | 1248 | 1248 | EF064499 | None | | | | I13V, K14R, G17E, K20I, M36I, N37D, R41K, K43R, L63P, H69K, L89M | CRF02_AG |
| | 1260 | 1260 | EF064504 | None | | | | T4D, L10I, E35D, M36I, R41K, L63P, H69K, K70H, L89M | CRF02_AG |
| | 1278 | 1278 | EF064516 | None | | | | I13V, K14R, G16E, K20I, M36I, R41K, K43R, L63P, H69K, N83K, L89I | CRF02_AG |
| | 1280 | 1280 | EF064518 | None | | | | L10I, I13V, M36I, R41K, L63P, H69Q, L89M | CRF02_AG |
| | 1296 | 1296 | EF064522 | None | | | | L10I, I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, I72M, L89M | CRF02_AG |
| | 1304 | 1304 | EF064526 | None | | | | I13V, K14R, I15V, K20I, M36I, P39I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 1323 | 1323 | EF064536 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, C67H, H69K, L89I | CRF02_AG |
| | 1325 | 1325 | EF064537 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| Gatanaga (2007) | C03-51110021-1 | C03-51110021-1 | AB640121 | None | | | | L10I, I13V, L19P, K20I, M36I, R41K, K43R, L63P, H69K, V77VI, L89M | CRF02_AG |
| Holguin (2007) | 589060 | 589060 | EF583206 | None | | | | I13V, K14KR, L19P, K20I, E35D, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | 612835 | 612835 | EF583260 | None | | | | I13V, K20I, E35D, M36I, N37D, P39PL, L63P, I64M, H69K, L89M | CRF02_AG |
| | 619549 | 619549 | EF583279 | None | | | | I13V, I15V, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| McNulty (2007) | Cam23 | Cam23PL | DQ869213 | None | | | | K20I, M36I, R41K, L63P, I64M, H69K, L89M | CRF02_AG |
| | | Cam23DBS | DQ869212 | None | | | | K20I, M36I, R41K, L63P, I64M, H69K, L89M | CRF02_AG |
| | Cam38 | Cam38DBS | DQ869236 | None | | | | L19P, K20I, M36I, R41K, L63P, I64L, H69K, V82I, L89M | CRF02_AG |
| Sagoe (2007) | 34 | GHN34 | EF174562 | None | | | | T12A, I13V, I15LV, G17E, K20I, M36I, L63P, C67CY, H69K, L89M | CRF02_AG |
| | 81 | GHN81 | EF174565 | None | | | | I13AV, K14R, K20I, E35D, M36I, R41K, L63P, H69K, V82VI, L89M | CRF02_AG |
| | 93 | GHN93 | EF174566 | None | | | | I13V, K14R, K20I, M36I, L38I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | 123 | GHN123 | EF174569 | None | | | | I13A, I15IV, L19LP, K20I, A22AV, M36IT, R41K, L63P, I64IV, H69K, V77VI, L89I | CRF02_AG |
| Sanchez Onoro (2007) | 0704170 | 0704170 | | None | | | | I3V, L10I, I13V, I15LV, L19V, K20I, L33LV, E35N, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 614034 | 614034 | | None | | | L10LF | T12P, I13IV, K14R, L19LP, K20KM, E35D, M36MI, R41K, K43KR, L63P, H69HQ, K70KE, A71AT, L89LM, I93IL | CRF02_AG |
| | 628860 | 628860 | | None | | | | I13V, K14R, G17D, K20I, M36I, N37NS, R41K, L63P, H69K, K70KR, L89M | CRF02_AG |
| | 716294 | 716294 | | None | | | | I13V, K14R, L19P, K20I, E35D, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| Vicenti (2007) | LR_98 | 35498 | EF376649 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, K70KR, L89M | CRF02_AG |
| | LR_99 | 35496 | EF376638 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| von Wyl (2007) | 100 | 5933726 | EF449902 | None | | | | I13V, K20I, M36I, N37N_N, L63P, H69K, K70R, V77I, L89M | CRF02_AG |
| Zhong (2007) | D0008 | 05CN_008 | EF199556 | None | | | | L63P, I93L | CRF02_AG |
| Caron (2008) | 1357 | Gab1357P | EU556460 | None | | | | I13V, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 2326 | Gab2326P | EU556464 | None | | | | I13V, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Delgado (2008) | GH_009 | GH_009 | EU177886 | None | | | | I13V, K14R, L19P, K20I, E35N, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | GH_011 | GH_011 | EU177888 | None | | | V11I, L89V | I13A, K20I, M36I, N37D, R41K, L63P, H69K | CRF02_AG |
| | GH_012 | GH_012 | EU177889 | None | | | | L10I, I13V, K14KR, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | GH_025 | GH_025 | EU177901 | None | | | | T12A, I13V, K20V, M36I, R41RK, L63P, H69K, K70KR, L89M | CRF02_AG |
| | GH_027 | GH_027 | EU177903 | None | | | L89V | I13V, K14KR, K20M, M36I, R41K, L63P, H69K, P79A | CRF02_AG |
| | GH_029 | GH_029 | EU177905 | None | | | | L10I, I13V, K14IM, L19P, K20I, E34A, M36L, N37S, R41K, Q61H, L63P, H69K, L89M | CRF02_AG |
| | GH_032 | GH_032 | EU177907 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | GH_061 | GH_061 | EU177929 | None | | | | T12A, I13V, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | GH_076 | GH_076 | EU177940 | None | | | | L10V, I13V, K14R, L19P, K20I, M36I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | GH_077 | GH_077 | EU177941 | None | | | | I13V, I15L, G17E, K20I, M36I, R41K, Q61H, L63P, H69K, L89M | CRF02_AG |
| | GH_078 | GH_078 | EU177942 | None | | | | T12E, I13V, K14T, K20I, M36I, N37D, L63P, H69K, L89M | CRF02_AG |
| | GH_079 | GH_079 | EU177943 | None | | | | I13V, I15L, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | GH_084 | GH_084 | EU177948 | None | | | | I13V, K14KR, I15V, L19V, K20I, M36I, R41K, L63P, G68E, H69R, L89I | CRF02_AG |
| | GH_089 | GH_089 | EU177952 | None | | | | T12S, I13A, K14R, K20I, M36I, R41K, L63P, H69K, I72M, L89I | CRF02_AG |
| | GH_091 | GH_091 | EU177954 | None | | | | I13V, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | GH_101 | GH_101 | EU177956 | None | | | | I13V, K20I, E34G, M36L, R41K, L63P, I64IM, G68E, H69KR, L89M | CRF02_AG |
| | GH_105 | GH_105 | EU177959 | None | | | | I13V, K14R, G16E, K20I, M36I, P39S, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | GH_117 | GH_117 | EU177968 | None | | | | I13V, I15L, K20I, M36I, R41K, L63P, I64L, H69K, V77I, L89M | CRF02_AG |
| | GH_143 | GH_143 | EU177989 | None | | | | I13AV, K14KR, K20I, E21Q, M36I, N37D, R41K, L63P, H69K, I72M, L89M | CRF02_AG |
| | GH_154 | GH_154 | EU177998 | None | | | | L10V, T12S, I13A, K20I, M36I, N37ND, R41K, L63P, H69K, K70KR, L89I | CRF02_AG |
| | GH_156 | GH_156 | EU177999 | None | | | | I13A, L19LS, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | GH_159 | GH_159 | EU178001 | None | | | | L10V, I13V, K14R, L19P, K20I, M36I, N37D, R41K, L63P, H69K, K70KR, L89M | CRF02_AG |
| | GH_194 | GH_194 | EU178027 | None | | | V11I | I13V, K14R, L19V, K20I, E35ED, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | GH_197 | GH_197 | EU178030 | None | | | | I13AV, K14R, K20IM, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| | GH_204 | GH_204 | EU178035 | None | | | | I13V, K20R, M36I, R41K, R57K, L63P, H69K, L89M | CRF02_AG |
| | GH_236 | GH_236 | EU178062 | None | | | | L10I, I13A, I15V, L19P, K20I, M36I, N37D, L63P, H69K, K70R, L89M | CRF02_AG |
| | GH_245 | GH_245 | EU178070 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, C67H, H69K, L89M | CRF02_AG |
| | GH_246 | GH_246 | EU178071 | None | | | | T12A, I13V, K14R, K20I, M36I, R41K, K43R, L63P, H69K, L89M | CRF02_AG |
| | GH_259 | GH_259 | EU178081 | None | | | | I13A, K14N, L19I, K20I, M36I, N37ND, L63P, H69K, K70R, I72M, L89I | CRF02_AG |
| | GH_260 | GH_260 | EU178082 | None | | | | T12A, I13V, K14R, K20I, E35ED, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | GH_162 | GH_162 | EU178084 | None | | | | I13V, K14KR, I15IV, G17E, K20I, M36A, L63P, H69K, K70R, L89M | CRF02_AG |
| | GH_181 | GH_181 | EU178085 | None | | | | I13V, K14R, K20I, M36I, P39S, L63P, H69K, L89M | CRF02_AG |
| Derache (2008) | BKO-882 | BKO-882 | EU330649 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | BKO-883 | BKO-883 | EU330650 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | BKO-896 | BKO-896 | EU330655 | None | | | | I13A, K14R, L19P, K20I, M36I, R41K, L63P, H69K, I72M, L89I | CRF02_AG |
| | BKO-916 | BKO-916 | EU330664 | None | | | | I13V, K20I, M36I, R41K, L63P, H69K, I72L, L89M | CRF02_AG |
| | BKO-926 | BKO-926 | EU330669 | None | | | | I13V, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | BKO-933 | BKO-933 | EU330671 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | BKO-940 | BKO-940 | EU330675 | None | | | V11I | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | BKO-941 | BKO-941 | EU330676 | None | | | | I13V, K14R, G17E, K20I, M36I, R41K, K43R, L63P, H69K, I72L, L89I | CRF02_AG |
| | BKO-964 | BKO-964 | EU330689 | None | | | | T12K, I13V, K14R, G16E, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | BKO-969 | BKO-969 | EU330691 | None | | | | I13V, K14R, K20I, E35D, M36I, N37S, R41K, L63P, H69K, L89M | CRF02_AG |
| | BKO-992 | BKO-992 | EU330706 | None | | | | L10I, I13V, G17E, K20I, M36I, P39L, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | BKO-1015 | BKO-1015 | EU330709 | None | | | | I13V, K14R, G17E, K20I, E35G, M36I, L63P, H69K, V77I, P79S, L89M | CRF02_AG |
| | BKO-1020 | BKO-1020 | EU330712 | None | | | | T12A, I13V, K20R, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | BKO-1034 | BKO-1034 | EU330721 | None | | | | I13A, G16E, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | BKO-1040 | BKO-1040 | EU330724 | None | | | | L10I, I13V, M36I, L63P, H69K, L89M | CRF02_AG |
| | BKO-1063 | BKO-1063 | EU330739 | None | | | | L10V, I13A, I15V, K20I, M36T, R41K, L63P, H69K, L89I | CRF02_AG |
| | BKO-1067 | BKO-1067 | EU330742 | None | | | | T12A, I13A, K14R, G17E, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | SGO-03 | SGO-03 | EU330748 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | SGO-07 | SGO-07 | EU330752 | None | | | | I13A, K14R, K20I, M36I, N37D, R41K, L63P, G68E, H69R, L89M | CRF02_AG |
| | SGO-20 | SGO-20 | EU330764 | None | | | | R8Q, I13A, K20I, M36I, K43Q, L63P, H69K, K70E, L89M | CRF02_AG |
| | SGO-30 | SGO-30 | EU330774 | None | | | V11I | T12P, I13V, K14R, K20I, M36I, N37D, R41K, L63P, G68E, H69K, V82I, L89M | CRF02_AG |
| | SGO-59 | SGO-59 | EU330803 | None | | | | I13V, I15V, K20I, M36I, R41K, L63P, I64L, G68E, H69R, I72V, L89M | CRF02_AG |
| | SGO-60 | SGO-60 | EU330804 | None | | | | I13V, I15L, K20I, M36I, L38I, R41K, I62V, L63P, I64M, H69K, K70R, L89M | CRF02_AG |
| | SGO-65 | SGO-65 | EU330809 | None | | | | L10V, I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | SGO-77 | SGO-77 | EU330819 | None | | | | I13V, K14R, K20I, M36I, N37D, R41K, L63P, G68E, H69R, L89M | CRF02_AG |
| | SGO-91 | SGO-91 | EU330831 | None | | | | I13V, K14G, I15V, K20I, M36I, N37D, L63P, H69K, L89M | CRF02_AG |
| | SGO-98 | SGO-98 | EU330838 | None | | | | I13A, K14R, L19I, K20I, M36I, N37S, R41K, R57K, I62V, L63P, H69K, K70R, L89M | CRF02_AG |
| Holguin (2008) | SP98-364297 | SP98-364297 | EU255444 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | SP5-302731 | SP5-302731 | EU342789 | None | | | | I13V, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | SP17-331966 | SP17-331966 | EU342800 | None | | | | I13V, K14R, I15V, K20I, M36I, N37T, P39S, R41K, L63P, H69K, L89I | CRF02_AG |
| | SP32-328001 | SP32-328001 | EU342805 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, I72L, L89M | CRF02_AG |
| Lloyd (2008) | CR150 | 03HN_CR150 | EU312709 | None | | | | I13IV, K14KR, E35D, R41K, L63P, K70R, V77L | CRF02_AG |
| McConnell (2008) | NV28 | NV28 | EU288113 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, V77VI, V82I, L89M | CRF02_AG |
| | NV45 | NV45 | EU288130 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, V77VI, V82I, L89M | CRF02_AG |
| Ndembi (2008) | CMYD-53 | 04CMYD-53 | DQ990419 | None | | | | I13V, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | CMYD-62 | 04CMYD-62 | DQ990426 | None | | | | I13V, K14R, G17E, K20I, M36L, N37S, L63P, H69K, L89M | CRF02_AG |
| | CMYD-80 | 04CMYD-80 | DQ990440 | None | | | | I13V, K14R, G16X, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | CMYD-96 | 04CMYD-96 | DQ990450 | None | | | | I13V, K20I, E35K, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| Ndembi (2008) | IAEM069 | IAEM069 | EU306788 | None | | | | I13V, L19I, E35D, M36I, R41K, K45R, R57K, L63P, I64L, H69K, L89M | CRF02_AG |
| Palacios (2008) | 12599 | 12599 | | None | | | | I13V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Rosen-Zvi (2008) | 1 | 03p1-1 | | None | | | | I13V, K14R, K20R, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| Sirivichayakul (2008) | NBC-25 | NBC-25Pr | JQ364325 | None | | | | I13V, K14R, G16E, K20I, E35D, M36I, P39S, R41K, L63P, I64M, H69K, K70R, L89M | CRF02_AG |
| Sylla (2008) | A1177 | A1177_C1 | DQ991623 | None | | | | I13V, G17E, K20V, M36I, L63P, H69K, L89M | CRF02_AG |
| | | A1177_C2 | DQ991624 | None | | | | I13V, G17E, K20V, M36I, L63P, H69K, L89M | CRF02_AG |
| | D635 | D635_C1 | DQ991663 | None | | | | I13V, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | | D635_C2 | EF588325 | None | | | | I13V, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | A2619 | A2619_C1 | EF525657 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | | A2619_C2 | EF525658 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| Aghokeng (2009) | CYM004 | CYM004 | GU191554 | None | | | | I13V, L19P, K20I, E35D, M36I, N37D, L63P, H69K, L89M | CRF02_AG |
| | CYN760 | CYN760 | GU191557 | None | | | | I13V, K14R, L19P, K20I, M36I, N37D, L63P, H69K, L89M | CRF02_AG |
| | CYM075 | CYM075 | GU191559 | None | | | | I13V, K14R, G17E, L19I, K20I, M36I, P39L, R41RK, L63P, H69K, L89I | CRF02_AG |
| | CYR044 | CYR044 | GU191561 | None | | | | I13V, L19Q, K20I, M36I, P39S, R41K, L63P, I64M, H69K, K70R, L89M | CRF02_AG |
| | CYM211 | CYM211 | GU191576 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | CDG53 | CDG53 | GU191601 | None | | | | I13A, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89IM | CRF02_AG |
| | CDH30 | CDH30 | GU191605 | None | | | L33LF | I13V, K14R, L19LP, K20I, E35DN, M36I, P39PS, R41K, L63P, H69K, L89M | CRF02_AG |
| | CDC0028 | CDC0028 | GU191627 | None | | | | L10V, I13V, K14R, L19P, K20I, M36I, N37D, R41K, K43R, L63P, H69K, K70R, L89M | CRF02_AG |
| | DG0405 | DG0405 | GU191645 | None | | | | Q7E, E35D, M36I, N37E, R41K, K43KQ, R57K, L63P, K70R | CRF02_AG |
| Ayouba (2009) | RES607 | RES607PR | GQ351712 | None | | | | T4N, I13V, K14R, K20I, M36I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | RES621 | RES621PR | GQ351719 | None | | | | L10I, I13A, K14R, I15V, L19Q, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | RES647 | RES647PR | GQ351727 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, C67Y, H69K, K70R, L89I | CRF02_AG |
| | RES027 | RES027-1PR | GQ351735 | None | | | | I13V, Q18E, K20I, E35N, M36L, R41K, L63P, H69K, L89M | CRF02_AG |
| | RES208 | RES208-8PR | GQ351742 | None | | | | I13V, K14R, G17E, K20I, M36L, N37T, P39S, R41K, L63P, H69K, L89M, N98D | CRF02_AG |
| | RES226 | RES226-8PR | GQ351744 | None | | | V11I | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | RES231 | RES231-8PR | GQ351746 | None | | | | T12A, I13A, K14R, K20I, M36I, N37S, P39Q, R41K, L63P, H69K, L89I | CRF02_AG |
| | RES245 | RES245-8PR | GQ351748 | None | | | | I13A, K14R, I15V, K20I, M36I, R41K, L63P, H69K, V75I, L89M | CRF02_AG |
| | 0.420 | 0.420-MPR | GQ351820 | None | | | | I13V, I15L, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 0.607 | 0.607-FPR | GQ351825 | None | | | | I13V, K20I, M36I, N37S, R41K, L63P, H69K, L89I | CRF02_AG |
| | 0.615 | 0.615-SPR | GQ351829 | None | | | | I13V, K14R, I15V, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | 0.625 | 0.625-JPR | GQ351834 | None | | | | I13V, K14R, K20I, M36I, N37S, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | 0.637 | 0.637-PPR | GQ351837 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| | 0.649 | 0.649-ZPR | GQ351839 | None | | | | I13A, K20I, M36I, R41K, L63P, H69K, I72L, L89I | CRF02_AG |
| | 0.651 | 0.651-BPR | GQ351840 | None | | | | I13V, G16E, K20I, M36I, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | 0.663 | 0.663-JPR | GQ351844 | None | | | | I13V, L19P, K20I, M36I, N37D, L63P, H69K, L89M | CRF02_AG |
| | 208 | 208-DPR | GQ351848 | None | | | | I13A, K14R, L19P, K20I, A22V, M36I, R41K, L63P, H69K, K70R, R87Q, L89I | CRF02_AG |
| | 2705 | 2705HALDPR | GQ351960 | None | | | | I13V, K14R, I15V, K20I, M36I, R41K, L63P, I64M, H69K, L89M | CRF02_AG |
| | 3075 | 3075HALDPR | GQ351969 | None | | | | I13V, K14R, G16D, K20I, M36I, R41K, I62V, L63P, H69K, L89M | CRF02_AG |
| | 2916 | 2916HALDPR | GQ351953 | None | | | | I13V, K14R, I15V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 2907 | 2907HALDPR | GQ351985 | None | | | | I13A, I15V, K20I, M36I, R41K, L63P, I64L, H69K, K70R, L89M | CRF02_AG |
| | 2881 | 2881HALDPR | GQ351987 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 2937 | 2937HALDPR | GQ351974 | None | | | | I13V, L19P, K20I, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | 2934 | 2934HALDPR | GQ351956 | None | | | | I13V, K14R, G16E, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 2879 | 2879HALDPR | GQ351963 | None | | | | I13V, K14R, G17E, K20I, M36I, L63P, H69K, L89I | CRF02_AG |
| | 2912 | 2912HALDPR | GQ351958 | None | | | | I13V, K14R, K20I, E35N, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 2915 | 2915HALDprot | GQ351957 | None | | | | L10I, I13V, K14R, K20I, E35D, M36I, L38I, R41K, L63P, H69Q, L89M | CRF02_AG |
| Bartolo (2009) | CSE125 | 01AOCSE125 | EU068207 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | HDP75 | 01AOHDP75 | EU068247 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Brown (2009) | CAS_103_1_7756 | CAS_103_1_7756 | FJ030644 | None | | | | I13V, K14R, K20I, E35D, M36I, R41RK, K45KQ, L63P, C67Y, H69K, L89M | CRF02_AG |
| Cuevas (2009) | P1568 | P1568.1 | EU822703 | None | | | | I13V, K14KR, Q18HR, L19I, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Hawkins (2009) | P622 | ZZP622 | FJ931131 | None | | | | I13V, K14R, I15V, K20I, E35ED, M36I, R41K, L63P, G68E, H69K, V77VI, L89M | CRF02_AG |
| | P633 | ZZP633 | FJ931139 | None | | | | I13V, K14R, G16E, K20I, M36I, N37S, P39S, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | P643 | ZZP643 | FJ931147 | None | | | | I13V, K14R, G17E, K20I, M36I, L63P, H69K, L89M | CRF02_AG |
| | P647 | ZZP647 | FJ931151 | None | | | | L10I, I13V, L19LP, K20V, M36I, R41K, L63P, L89M | CRF02_AG |
| | P662 | ZZP662 | FJ931162 | None | | | | I13V, K20I, M36I, N37Q, P39L, R41K, L63P, H69K, L89M | CRF02_AG |
| | P955 | ZZP955 | FJ931173 | None | | | | I13V, I15IV, L19LV, K20I, M36I, P39Q, R41K, L63P, H69K, L89M | CRF02_AG |
| | Q192 | ZZQ192 | FJ931200 | None | | | | I13V, K14R, K20I, E35G, M36I, R41K, L63P, G68E, H69K, K70R, V77I, L89M | CRF02_AG |
| | Q194 | ZZQ194 | FJ931201 | None | | | | L10I, I13V, I15V, L19P, K20I, M36I, R41K, L63P, C67Y, H69K, K70R, L89M | CRF02_AG |
| | Q833 | ZZQ833 | FJ931236 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, K43R, L63P, H69K, L89M | CRF02_AG |
| | Q829 | ZZQ829 | FJ931258 | None | | | | I13V, L19P, K20I, M36MI, N37D, L63P, H69K, L89M | CRF02_AG |
| | Q430 | ZZQ430 | FJ931265 | None | | | | I13V, K14R, I15V, K20I, M36I, R41K, L63P, G68E, H69R, I72V, L89M | CRF02_AG |
| | R104 | ZZR104 | FJ931295 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | R120 | ZZR120 | FJ931316 | None | | | V11I | T12A, I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| | Q949 | ZZQ949 | FJ931323 | None | | | | I13V, K20I, E35D, M36I, N37NK, R41H, D60E, L63P, H69K, L89M | CRF02_AG |
| | R121 | ZZR121 | FJ931330 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | R129 | ZZR129 | FJ931336 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, L89LM | CRF02_AG |
| | R161 | ZZR161 | FJ931351 | None | | | | I13V, I15V, G16E, K20I, M36I, P39L, L63P, H69K, L89M | CRF02_AG |
| | R203 | ZZR203 | FJ931366 | None | | | | L10V, I13V, K14R, G16E, K20I, M36I, P39S, L63P, H69K, K70R, L89M | CRF02_AG |
| | R353 | ZZR353 | FJ931379 | None | | | | I13V, K14KR, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | R225 | ZZR225 | FJ931384 | None | | | | I13V, K14R, G17E, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | R468 | ZZR468 | FJ931392 | None | | | | L10IV, I13V, I15V, K20I, E35K, M36I, R41N, K45R, L63P, C67S, H69K, L89M | CRF02_AG |
| | R469 | ZZR469 | FJ931393 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, K43R, L63P, H69K, L89M | CRF02_AG |
| | R254 | ZZR254 | FJ931399 | None | | | | I13V, K20I, M36I, N37D, R41K, L63P, L89M | CRF02_AG |
| | R374 | ZZR374 | FJ931411 | None | | | | I13V, K14R, K20I, E35D, M36I, N37E, L63P, H69K, V82VI, L89M | CRF02_AG |
| | R357 | ZZR357 | FJ931414 | None | | | | I13V, G17E, K20I, M36I, N37S, R41K, L63P, G68GE, H69K, K70R, L89M | CRF02_AG |
| | R363 | ZZR363 | FJ931420 | None | | | | I13V, K14R, G17E, K20I, E35D, M36I, L63P, H69K, L89M | CRF02_AG |
| | R380 | ZZR380 | FJ931425 | None | | | | L63P, H69K, L89M | CRF02_AG |
| | R268 | ZZR268 | FJ931444 | None | | | | I13A, K14R, I15V, K20I, M36I, N37E, R41K, K43R, L63P, H69K, K70R, L89M | CRF02_AG |
| | R439 | ZZR439 | FJ931449 | None | | | | I13A, K14R, I15V, K20I, M36I, R41K, K43R, L63P, H69K | CRF02_AG |
| Tebit (2009) | TR66 | TR66 | FJ577273 | None | | | | I13V, Q18E, K20I, M36I, R41K, L63P, H69K, P79D, L89M | CRF02_AG |
| | TR92 | TR92 | FJ577280 | None | | | | T12A, I13V, K14R, I15V, G17E, K20I, E35D, M36I, N37D, L63P, I64M, H69K, L89M | CRF02_AG |
| | TR106 | TR106 | FJ577285 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | TR150 | TR150 | FJ577304 | None | | | | I13A, K20I, M36I, R41K, Q61E, L63P, H69K, K70R, L89M | CRF02_AG |
| | TR165 | TR165 | FJ577314 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, K70R, I72M, L89I | CRF02_AG |
| | TR179 | TR179 | FJ577323 | None | | | | L10V, I13V, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | TR213 | TR213 | FJ577336 | None | | | | L10I, I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | TR216 | TR216 | FJ577339 | None | | | V11I | I13A, K20I, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| Vercauteren (2009) | pt2138 | 420283161 | GQ398886 | None | | | | I13V, K14M, L19P, K20M, E21K, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt2063 | 924826896 | GQ398961 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt2048 | 0IK0wpUYxR | GQ398976 | None | | | | I13V, K14R, K20I, M36I, P39L, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| | pt1959 | 1528967185 | GQ399065 | None | | | | L10I, I13V, K14R, K20IM, M36T, R41K, L63P, C67F, H69K, L89I | CRF02_AG |
| | pt1937 | 1643423983 | GQ399087 | None | | | | I13V, K20I, E35D, M36I, P39PS, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt1920 | 17PGMYIwmA | GQ399104 | None | | | | I13V, I15V, G16E, K20I, M36I, N37S, P39S, R41K, L63P, I64L, H69K, K70R, L89M | CRF02_AG |
| | pt1914 | 1829667817 | GQ399110 | None | | | | I13V, I15IV, K20I, E35K, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt1553 | 399KKvlJPJ | GQ399471 | None | | | | I13V, K14R, K20I, E35D, M36I, L38I, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt1541 | 4003768476 | GQ399483 | None | | | | L10I, T12TA, I13V, K14GR, G16E, K20I, M36I, P39PS, R41K, L63P, E65D, H69K, K70R, L89M, I93V | CRF02_AG |
| | pt1455 | 4537181593 | GQ399569 | None | | | | L10LV, I13V, K14KR, G16GE, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | pt1439 | 4620717986 | GQ399585 | None | | | | I13V, G17E, K20I, M36I, L63P, H69K, L89M | CRF02_AG |
| | pt1428 | 4693886485 | GQ399596 | None | | | | I13V, K14R, G17E, K20I, E35ED, M36I, R41K, L63P, I64IV | CRF02_AG |
| | pt1338 | 5212793074 | GQ399686 | None | | | | I13V, K20I, E35N, M36I, R41K, K45R, R57K, L63P, H69K, K70G, L89M | CRF02_AG |
| | pt755 | 8634148955 | GQ400269 | None | | | | T12TK, I13AV, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt365 | hk3n5YopRJ | GQ400659 | None | | | | I13A, K14R, K20I, E35D, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt219 | oY2K7mDxxU | GQ400805 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | pt92 | v4sG5kK9od | GQ400932 | None | | | | I13V, K20I, E35A, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | pt25 | ynFkAu5OC5 | GQ400999 | None | | | | T12TP, I13V, K14KN, L19P, K20I, M36I, R41K, L63P, H69K, K70KR, L89I | CRF02_AG |
| Yaotse (2009) | HT048 | 06TG.HT048 | FM955688 | None | | | | T12A, I13V, K14R, L19I, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | HT051 | 06TG.HT051 | FM955690 | None | | | | I13A, K14R, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | HT054 | 06TG.HT054 | FM955691 | None | | | | I13V, K14R, I15V, G17E, K20I, M36I, N37D, L63P, I64L, H69K, L89M | CRF02_AG |
| | HT057 | 06TG.HT057 | FM955694 | None | | | | K14R, I15V, K20I, M36I, R41K, K43R, L63P, H69KQ, I72M, V77I, L89M | CRF02_AG |
| | HT064 | 06TG.HT064 | FM955699 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| | HT076 | 06TG.HT076 | FM955709 | None | | | | I13A, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | HT117 | 06TG.HT117 | FM955722 | None | | | | T12A, I13V, K14R, G16E, K20I, E35D, M36I, R41K, R57K, L63P, H69K, K70R, L89M | CRF02_AG |
| | HT120 | 06TG.HT120 | FM955723 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, I72IM, L89M | CRF02_AG |
| | HT128 | 06TG.HT128 | FM955728 | None | | | | I13V, I15V, K20I, E35D, M36I, L63P, I64L, H69K, L89M | CRF02_AG |
| | HT134 | 06TG.HT134 | FM955731 | None | | | | L10I, I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | HT136 | 06TG.HT136 | FM955733 | None | | | | I13V, K14R, I15V, K20I, M36I, R41K, Q61E, L63P, H69K, L89M | CRF02_AG |
| | HT151 | 06TG.HT151 | FM955739 | None | | | | I13A, K14R, K20I, A22V, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | HT152 | 06TG.HT152 | FM955740 | None | | | | I13V, K20I, E35G, M36I, N37S, P39S, R41K, R57K, L63P, H69K, V77I, L89M | CRF02_AG |
| | HT155 | 06TG.HT155 | FM955742 | None | | | | I13V, K14R, K20I, E35D, M36I, N37E, R41K, L63P, H69K, K70R, V75I, L89M | CRF02_AG |
| | HT157 | 06TG.HT157 | FM955744 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, D60E, L63P, H69K, T74S, V77I, L89M | CRF02_AG |
| | HT178 | 07TG.HT178 | FM955747 | None | | | | L10V, I13A, K14R, I15V, K20I, M36I, N37T, P39Q, R41K, L63P, H69K, L89M | CRF02_AG |
| | HT220 | 07TG.HT220 | FM955754 | None | | | | I13V, K14R, K20I, M36I, N37D, R41K, L63P, H69K, K70KR, L89M | CRF02_AG |
| Yebra (2009) | SP3-302731 | SP3-302731 | EU255376 | None | | | | I13V, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | SP12-331966 | SP12-331966 | EU255385 | None | | | | I13V, K14R, I15V, K20I, M36I, N37T, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| Bonura (2010) | 995_98 | 995_98 | GU969580 | None | | | | I13V, K14R, G17E, K20I, M36I, R41K, L63P, I64M, H69K, K70R, L89M | CRF02_AG |
| Carr (2010) | 2172SA | 02CM.2172SA | GU201512 | None | | | | T12A, I13V, K14R, K20I, M36I, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| Castro (2010) | PHI-14 | PHI-14 | GQ131609 | None | | | | T12Q, I13V, K14R, K20I, E35D, M36I, L63P, I64L, H69K, L89M | CRF02_AG |
| | PHI-7 | PHI-7 | GQ131602 | None | | | | T12Q, I13V, K14R, I15V, K20I, E35D, M36I, P39L, L63P, I64L, H69K, L89M | CRF02_AG |
| | PHI-20 | PHI-20 | GQ131615 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Diop-Ndiaye (2010) | 1264SC | 1264SC | FN599684 | None | | | | L10V, I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | 167HPD | 167HPD | FN599690 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 255HALD | 255HALD | FN599698 | None | | | | T12K, I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 89HPD | 89HPD | FN599710 | None | | | | I13V, K14R, L19S, K20M, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | 71HPD | 71HPD | FN599716 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | L152 | L152 | FN599727 | None | | | | I13A, K14R, L19P, K20I, A22V, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| | 483HALD | 483HALD | FN599744 | None | | | | V11M, T12A, I13V, K14R, I15V, Q18K, K20I, M36I, N37D, R41K, L63P, G68E, H69K, V82I, L89I | CRF02_AG |
| | 872hald | 872hald | FN599747 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, L89IM | CRF02_AG |
| | 881hald | 881hald | FN599750 | None | | | | I13A, K20I, M36I, L63P, H69K, L89M | CRF02_AG |
| | 897hald | 897hald | FN599753 | None | | | | L10I, I13V, K20I, E35Q, M36I, R41K, L63P, H69N, L89M | CRF02_AG |
| | 920hald | 920hald | FN599755 | None | | | | I13V, L19P, K20I, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | 931hald | 931hald | FN599762 | None | | | | I13V, K14KR, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 960hald | 960hald | FN599770 | None | | | | I13A, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 981hald | 981hald | FN599777 | None | | | | I13A, K20I, M36I, N37NT, R41K, K43KR, L63P, H69K, K70R, L89I | CRF02_AG |
| | 1727HALD | 1727HALD | FN599791 | None | | | | I13V, K14R, G17E, K20I, M36I, N37S, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| Djoko (2010) | 685 | CD1474 | FR666685 | None | | | | T12S, I13V, G17E, L19T, K20I, M36I, N37D, D60E, L63P, H69K, I72M, L89M | CRF02_AG |
| Djoko (2010) | GQ392 | 08GQ392 | FN557315 | None | | | | I13V, K14KR, L19P, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | GQ463 | 08GQ463 | FN557320 | None | | | | I13V, K20I, M36I, P39L, R41K, I62IV, L63P, I64M, H69K, V82I, L89M | CRF02_AG |
| | GQ385 | 08GQ385 | FN557326 | None | | | | I13V, K14R, G16GE, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | GQ060 | 08GQ060 | FN557327 | None | | | | I13V, K14R, K20I, M36I, P39L, R41K, L63P, H69K, L89M | CRF02_AG |
| | GQ027 | 08GQ027 | FN557335 | None | | | | L10I, I13V, K14R, I15IV, K20I, E35KQ, M36I, N37D, R41K, K43R, R57K, L63P, C67E, H69KQ, L89M | CRF02_AG |
| Germanaud (2010) | 5494 | 5494 | | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, V75I, L89M | CRF02_AG |
| | 5505 | 5505 | | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | 5593 | 5593 | | None | | | | T12I, I13V, K14R, I15V, K20I, E35Q, M36I, R41K, R57K, L63P, H69K, L89M | CRF02_AG |
| | 5599 | 5599 | | None | | | | I13V, Q18R, L19P, K20I, M36I, N37D, R41K, L63P, H69K, I72M, L89M | CRF02_AG |
| Moussa (2010) | 22 | 39-0851F1 | HM117946 | None | | | | L10I, I13V, K20I, E35N, M36I, N37D, R41K, L63P, H69Q, L89M | CRF02_AG |
| Soares (2010) | CM04_045 | CM04_045 | GU366110 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | CM04_053 | CM04_053 | GU366113 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69Q, K70R, L89M | CRF02_AG |
| | CM04_088 | CM04_088 | GU366125 | None | | | V11I | L10I, I13V, K14R, L19P, K20I, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | CM04_090 | CM04_090 | GU366126 | None | | | L33I | I13V, I15L, K20I, E34G, M36I, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | CM05_104 | CM05_104 | GU366130 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | CM04_083 | CM04_083 | GU366133 | None | | | | T12K, I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Yebra (2010) | 1013543 | 99SP01013543 | FJ481693 | None | | | | L10I, I13V, K14R, L19P, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | 107620 | 03SP00107620 | FJ481699 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, K70R, L89I | CRF02_AG |
| | 2697843 | 05SP02697843 | FJ481713 | None | | | L33F | I13V, K20V, M36I, R41RK, R57RK, L63P, H69NS, L89M | CRF02_AG |
| Zolfo (2010) | A13458 | A 13458 RS | HM565719 | None | | | | I13V, K20I, M36I, N37T, R41K, K43R, L63P, H69K, K70KR, L89M | CRF02_AG |
| | | A 13458 M30 | HM565633 | None | | | | I13V, K20I, M36I, N37T, R41K, K43R, L63P, H69K, K70KR, L89M | CRF02_AG |
| Aghokeng (2011) | HJ604 | HJ604 | JN639448 | None | | | | I13V, K14R, I15V, K20I, E35N, M36I, N37D, R41K, K43R, L63P, H69K, L89M | CRF02_AG |
| | HJ1979 | HJ1979 | JN639468 | None | | | I84IM | T12A, I13V, K14KR, K20IV, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | HJ1804 | HJ1804 | JN639475 | None | | | | L10V, I13V, K14R, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | HJ1927 | HJ1927 | JN639500 | None | | | | I13AV, K14KR, K20I, M36I, R41K, L63P, H69T, K70R, L89I | CRF02_AG |
| | HJ1685 | HJ1685 | JN639507 | None | | | | L10LV, I13AV, K14R, I15V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | HJ1973 | HJ1973 | JN639515 | None | | | | T12TK, I13V, K14R, K20I, M36I, N37S, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | SK8023-PI | SK8023-PI | HQ864380 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89I | CRF02_AG |
| | SK7016-PI | SK7016-PI | HQ864388 | None | | | | I13V, K14R, K20I, M36I, N37A, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | SK2025-PI | SK2025-PI | HQ864393 | None | | | | L10V, T12K, I13V, I15V, L19P, K20I, E35D, M36I, R41K, L63P, H69K, K70KR, L89M | CRF02_AG |
| | SK3019-PI | SK3019-PI | HQ864396 | None | | | | T12A, I13V, G17GE, L19I, K20I, E34EG, M36MIL, N37NS, L63P, H69K, L89M | CRF02_AG |
| | SK8026-PI | SK8026-PI | HQ864398 | None | | | | I13V, K14KR, G17E, K20I, M36I, N37NT, I62IV, L63P, H69K, K70KR, A71AT, I72IT, L89M | CRF02_AG |
| | SK4074-PI | SK4074-PI | HQ864407 | None | | | | I13V, K14R, K20I, M36I, N37T, P39S, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| | SK8036-PI | SK8036-PI | HQ864416 | None | | | | I13V, K14R, K20I, M36I, N37S, L63P, H69K, K70E, L89M | CRF02_AG |
| | SK8003-PI | SK8003-PI | HQ864425 | None | | | | I13V, L19P, K20I, E35ED, M36I, R41K, K43KR, L63P, H69K, K70KR, L89IM | CRF02_AG |
| | SK4075-PI | SK4075-PI | HQ864429 | None | | | | I13AV, K14KR, I15IV, K20I, M36I, R41K, L63P, H69K, A71AT, I72M, L89I | CRF02_AG |
| | SK8016-PI | SK8016-PI | HQ864430 | None | | | | I13V, K20I, E35A, M36I, N37D, L38I, R41K, L63P, H69K, L89M | CRF02_AG |
| Aghokeng (2011) | SK8072-M18 | SK8072-M18 | HQ864326 | None | | | | I13V, K14X, K20I, M36I, N37NS, R41K, L63P, H69K, L89M | CRF02_AG |
| | SK2050-PI | SK2050-PI | HQ864395 | None | | | | I13V, K14R, I15IV, K20IV, E35ED, M36I, R41K, K43KR, L63P, H69K, L89M | CRF02_AG |
| | SK6040-M24 | SK6040-M24 | HQ864464 | None | | | L33I | I13V, K14R, K20L, E35D, M36I, P39PT, R41K, L63P, H69K, K70KR, I72L, R87RG, L89I | CRF02_AG |
| Dagnra (2011) | 08TG.T3034 | 08TG.T3034 | FR715250 | None | | | | T12A, I13V, K14R, I15V, K20I, E35D, M36I, R41K, R57K, L63P, I64L, H69K, L89M | CRF02_AG |
| | 08TG.T3039 | 08TG.T3039 | FR715257 | None | | | V11I | T12A, I13V, K14R, I15V, K20I, M36I, R41K, L63P, H69K, A71AT, L89I | CRF02_AG |
| | 08TG.T3049 | 08TG.T3049 | FR715263 | None | | | | I13V, K14R, I15IV, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 08TG.T3069 | 08TG.T3069 | FR715266 | None | | | | L10V, I13V, K14KR, I15V, L19P, K20I, M36I, R41K, L63P, I64L, H69K, K70R, L89M | CRF02_AG |
| | 08TG.E5032 | 08TG.E5032 | FR715278 | None | | | | I13V, K14R, K20V, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | 08TG.C7024 | 08TG.C7024 | FR715292 | None | | | | L10V, I13V, K14KR, I15V, L19P, K20I, M36I, R41K, L63P, I64L, H69K, K70R, L89M | CRF02_AG |
| El Annaz (2011) | 7631 | 7631 | HQ393286 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, I64L, H69K, K70KR, L89M | CRF02_AG |
| Fokam (2011) | CIRCB-10430 | CIRCB-10430 | JQ796110 | None | | | | I13A, L19LV, K20I, M36I, N37D, L63P, H69K, K70R, I72M, L89I | CRF02_AG |
| | CIRCB-2223 | CIRCB-2223 | JQ796123 | None | | | | I13V, L19P, K20I, M36I, N37NS, R41K, K43KR, L63P, H69K, L89M | CRF02_AG |
| | CIRCB-7949 | CIRCB-7949 | JQ796124 | None | | | | L10I, I13V, I15IV, L19P, K20I, E35DN, M36I, R41K, K45R, L63P, I64K, H69Q, I72V, L89M, T91TN, T96TN | CRF02_AG |
| | CIRCB-9830 | CIRCB-9830 | JQ796161 | None | | | | I13V, K14R, G17E, K20I, E35ED, M36I, N37A, L63P, H69K, L89M | CRF02_AG |
| | CIRCB-10124 | CIRCB-10124 | JQ796164 | None | | | | L10LV, T12A, I13V, I15V, K20I, E35D, M36I, R41K, K43R, Q61H, L63P, G68E, H69R, K70R, L89M | CRF02_AG |
| | CIRCB-10613 | CIRCB-10613 | JQ796174 | None | | | | I13V, K14KR, I15V, K20I, E35D, M36I, N37D, R41K, L63P, I64M, C67Y, H69K, V77I, L89M | CRF02_AG |
| Hamers (2011) | CP076303495 | CP076303495 | HQ993983 | None | | | | I13V, K20IR, M36I, L38I, R41K, L63P, H69K, K70KR, L89M | CRF02_AG |
| | CP076303510 | CP076303510 | HQ993993 | None | | | | I13V, I15V, K20I, E35D, M36IV, R41H, D60E, L63P, H69K, K70KR, L89M | CRF02_AG |
| | CP076303512 | CP076303512 | HQ993995 | None | | | | L10I, I13V, K14R, I15IV, L19P, K20I, M36I, R41K, L63P, C67CNSY, H69KR, K70KR, L89M | CRF02_AG |
| | CP076303534 | CP076303534 | HQ994015 | None | | | | I13V, K14R, L19P, K20I, M36I, R41K, L63P, I64IM, H69K, K70R, L89M | CRF02_AG |
| | CP076303578 | CP076303578 | HQ994048 | None | | | | I13V, I15V, G16E, K20I, E35D, M36I, P39T, R41K, L63P, H69K, K70R, V77I, L89M | CRF02_AG |
| | CP076303583 | CP076303583 | HQ994050 | None | | | | I13V, K14R, I15IV, K20I, E35K, M36I, R41T, L63P, H69K, L89M | CRF02_AG |
| | CP076303599 | CP076303599 | HQ994063 | None | | | | I13V, K14R, G17E, K20I, M36I, L63P, H69K, L89M | CRF02_AG |
| | CP076303611 | CP076303611 | HQ994072 | None | | | | L10V, I13V, K14R, G17E, K20I, E35D, M36I, L63P, H69K, L89M | CRF02_AG |
| | CP076303624 | CP076303624 | HQ994083 | None | | | | K20I, M36I, R41K, L63P, H69K, K70R, L89LIM | CRF02_AG |
| | CP076303626 | CP076303626 | HQ994084 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, I93M | CRF02_AG |
| | CP076305143 | CP076305143 | HQ994099 | None | | | | I13V, K20I, M36I, P39L, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | CP076305155 | CP076305155 | HQ994109 | None | | | | I13A, K14R, K20I, E35D, M36I, R41K, R57K, L63P, H69K, L89M | CRF02_AG |
| | CP076305162 | CP076305162 | HQ994116 | None | | | | T12IM, I13V, K14KR, I15IV, L19LP, K20I, M36I, R41K, L63P, H69K, L89IM | CRF02_AG |
| | CP076305164 | CP076305164 | HQ994118 | None | | | | I13V, K14R, K20I, E35Q, M36I, N37S, R41K, R57K, L63P, C67E, H69K, V77VI, L89M | CRF02_AG |
| | CP076305177 | CP076305177 | HQ994128 | None | | | | L10I, I13V, K14R, K20I, M36I, R41K, L63P, H69N, L89M | CRF02_AG |
| | CP076305192 | CP076305192 | HQ994133 | None | | | | I13V, K14R, K20I, E35EK, M36I, N37ND, R41K, L63P, H69K, L89M | CRF02_AG |
| | CP076305222 | CP076305222 | HQ994155 | None | | | | I13V, K14R, K20I, M36I, N37D, R41K, K43R, L63P, H69K, L89M | CRF02_AG |
| | CP076303630 | CP076303630 | HQ994161 | None | | | | I13V, K20I, M36I, R41K, L63P, H69K, I72IL, L89IM, I93IV | CRF02_AG |
| | CP076300928 | CP076300928 | HQ994544 | None | | | | E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Kousiappa (2011) | CY192 | CY192 | JF683745 | None | | | V11I | L10I, T12E, I13V, K20I, M36I, R41K, L63P, C67Y, H69K, K70R, I72V, L89M | CRF02_AG |
| | CY217 | CY217 | JF683766 | None | | | | I13V, K14R, K20I, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| Ng (2011) | HM006 | HM006 | HQ539041 | None | | | | I13V, K14R, I15L, K20I, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | HM068 | HM068 | HQ539097 | None | | | | I13V, K14R, I15L, K20I, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| | HM154 | HM154 | HQ539178 | None | | | | I13V, I15L, Q18K, K20I, M36I, N37D, R41K, L63P, H69K, L89M | CRF02_AG |
| Ajoge (2012) | H10 | HP10 | HM854104 | None | | | | I13V, K20I, M36I, P39L, R41K, L63P, H69K, L89M | CRF02_AG |
| | H61 | HP61 | HM854126 | None | | | | I13A, K14R, K20I, M36I, P39A, R41K, L63P, H69K, L89M | CRF02_AG |
| Caron (2012) | Gab013192 | Gab013192 | HQ541888 | None | | | | I13V, K14R, K20I, M36I, N37H, P39S, R41K, L63P, H69K, L89M | CRF02_AG |
| | Gab014121 | Gab014121 | HQ541893 | None | | | | I13A, I15V, K20I, M36I, P39L, R41K, L63P, H69K, L89M | CRF02_AG |
| | Gab052155 | Gab052155 | HQ541919 | None | | | | I13V, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | Gab011245 | Gab011245 | JN704990 | None | | | | L10I, V11T, T12A, I13V, L19I, K20I, M36I, R41K, L63P, I64V, H69K, K70R, L89I | CRF02_AG |
| | Gab091002 | Gab091002 | JN705004 | None | | | | L10V, I13V, I15V, G16E, K20I, E35Q, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| Chamberland (2012) | D301T | D301T | HQ267534 | None | | | | T12TI, I13V, K14KR, L19P, K20I, M36I, R41K, L63P, I64IM, H69K, K70R, L89M | CRF02_AG |
| | C409S | C409S | HQ267540 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | C421S | C421S | HQ267547 | None | | | | I13V, K14R, G17E, K20I, M36I, N37ND, P39S, L63P, I64M, H69K, L89M | CRF02_AG |
| | C424S | C424S | HQ267550 | None | | | | I13V, I15V, K20I, E35G, M36I, N37S, R41K, L63P, H69K, V77I, P79S, L89M | CRF02_AG |
| | C436S | C436S | HQ267560 | None | | | | I13A, K20I, M36I, N37E, R41K, L63P, H69K, L89M | CRF02_AG |
| | C447S | C447S | HQ267571 | None | | | | I13V, K20I, M36I, N37T, P39V, R41K, L63P, H69K, V82I, L89M | CRF02_AG |
| | C456S | C456S | HQ267575 | None | | | | I13V, I15V, L19I, K20I, E35D, M36I, R41K, L63P, H69K, K70R, I72M, L89M | CRF02_AG |
| | C460S | C460S | HQ267578 | None | | | | L10I, I13V, K14R, G16GW, K20I, E35G, M36I, N37S, R41K, L63P, C67D, H69K, P79S, L89M | CRF02_AG |
| | C461S | C461S | HQ267579 | None | | | | I13V, K14R, G16E, K20I, E35D, M36I, R41K, L63P, I64M, H69K, L89M | CRF02_AG |
| | C470S | C470S | HQ267583 | None | | | | I13V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | C476S | C476S | HQ267586 | None | | | | T12A, I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, I64IM, E65EQ, H69K, K70KR, L89M | CRF02_AG |
| | C481S | C481S | HQ267588 | None | | | | T12A, I13V, K20I, E35D, M36I, N37S, L38I, R41K, L63P, H69K, L89M | CRF02_AG |
| | C482S | C482S | HQ267589 | None | | | | I13V, K14R, I15V, K20I, E35D, M36I, R41K, L63P, G68E, H69K, L89M | CRF02_AG |
| | C498S | C498S | HQ267594 | None | | | | I13V, G16E, K20I, E35K, M36I, P39S, R41K, L63P, H69K, V77I, L89M | CRF02_AG |
| | C505S | C505S | HQ267596 | None | | | | I13A, K14R, K20I, M36I, R41K, I62V, L63P, H69K, L89M | CRF02_AG |
| | C513S | C513S | HQ267603 | None | | | | I13V, K14R, K20I, M36I, N37D, L63P, I64L, H69K, L89M | CRF02_AG |
| | D307T | D307T | HQ267610 | None | | | L89MV | I13V, G16E, K20I, M36L, I62IV, L63P, H69K | CRF02_AG |
| | D324T | D324T | HQ267621 | None | | | | L10I, I13V, K14R, K20I, R41K, L63P, C67S, H69K, K70R, I72IM, L89M | CRF02_AG |
| | D329T | D329T | HQ267625 | None | | | | T12A, I13A, K14R, K20I, A22V, E35D, M36I, R41K, L63P, H69K, K70R, L89I, T91I | CRF02_AG |
| | D341S | D341S | HQ267635 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | D343T | D343T | HQ267638 | None | | | | I13V, K14R, G17E, K20I, M36I, L63P, H69K, L89M | CRF02_AG |
| | D346T | D346T | HQ267641 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, I64L, H69K, L89M | CRF02_AG |
| | D355T | D355T | HQ267647 | None | | | | I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | D356T | D356T | HQ267648 | None | | | | I13V, I15V, K20I, E35D, M36I, P39T, R41K, L63P, H69K, L89M | CRF02_AG |
| | D360T | D360T | HQ267649 | None | | | | I13A, K20I, E35D, M36I, R41K, R57RK, L63P, H69K, K70R, L89M | CRF02_AG |
| | D363T | D363T | HQ267652 | None | | | | I13A, K14R, K20I, M36I, N37T, R41K, D60E, L63P, H69K, L89I | CRF02_AG |
| De Gascun (2012) | IRL41649 | IRL41649 | JN622243 | None | | | | L10I, T12TA, I13AV, L19P, K20I, M36I, R41K, K43R, L63P, C67Y, H69K, K70R, L89M | CRF02_AG |
| | IRL25637 | IRL25637 | JN622249 | None | | | L10LF, L76LF | I13A, K14R, G16GR, K20I, M36I, L38LS, R41K, D60DY, L63P, H69K, K70KR, L89M, I93IM, L97L*, N98ND | CRF02_AG |
| | IRL14981 | IRL14981 | JN622252 | None | | | V11I | I13V, K14R, K20I, M36L, N37S, R41K, L63P, H69K, L89I | CRF02_AG |
| | IRL30776 | IRL30776 | JN622255 | None | | | | I13V, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | IRL38424 | IRL38424 | JN622256 | None | | | | I13V, K14R, I15V, E35ED, M36ILST, N37NCSY, R41K, I62V, L63P, H69K, L89M | CRF02_AG |
| | IRL50192 | IRL50192 | JN622258 | None | | | | I13V, I15V, G16E, K20I, M36I, N37S, P39S, L63P, I64L, H69K, K70R, L89M | CRF02_AG |
| | IRL56491 | IRL56491 | JN622261 | None | | | | I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |
| | IRL13537 | IRL13537 | JN622267 | None | | | | I13V, I15V, G16E, K20I, M36I, N37S, P39S, L63P, H69K, K70R, L89M | CRF02_AG |
| | IRL39239 | IRL39239 | JN622273 | None | | | | T12K, I13V, K14R, K20I, M36I, N37E, P39Q, L63P, H69K, L89M | CRF02_AG |
| | IRL07034 | IRL07034 | JN622327 | None | | | | I13V, I15IV, G16EQ, K20I, M36I, P39L, R41RK, L63P, I64L, H69K, L89M | CRF02_AG |
| | IRL23294 | IRL23294 | JN622349 | None | | | | I13V, K20I, M36I, N37S, R41K, L63P, H69K, P79S, L89M, Q92QH | CRF02_AG |
| Delwart (2012) | 480-1274-4 | 480-1274-4 | JN214953 | None | | | | L10I, I13V, L19P, K20I, M36I, N37T, L63P, I64V, H69K, L89I | CRF02_AG |
| Karlsson (2012) | SE_215 | SE_215 | JQ698819 | None | | | | I13V, K14R, K20I, E35D, M36I, N37E, L63P, I64L, C67Y, H69K, L89M | CRF02_AG |
| Machado (2012) | CUPL1021 | CUPL1021 | HQ655398 | None | | | | I13V, G16E, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M, T91A | CRF02_AG |
| | CUPL1063 | CUPL1063 | JN000035 | None | | | | T12A, I13V, K14R, G16E, K20I, E35D, M36I, L63P, H69K, L89M | CRF02_AG |
| Youngpairoj (2012) | cm11bb | cm11bb | DQ166417 | None | | | | I13V, K14R, G16E, K20I, E35D, M36I, R41K, K43R, L63P, H69K, K70R, L89M | CRF02_AG |
| | cm1778 | cm1778 | DQ166409 | None | | | | I13V, K14N, I15V, K20I, M36I, N37S, L63P, H69K, L89M | CRF02_AG |
| | cm3081 | cm3081 | DQ166412 | None | | | | I13V, K14R, G17E, K20I, M36I, N37S, L63P, H69K, L89M | CRF02_AG |
| | cm70bb | cm70bb | DQ166424 | None | | | | I13V, K14R, K20I, M36I, R41K, L63P, I64M, H69K, L89M | CRF02_AG |
| Frentz (2013) | EHR-00105 | EHR-00105 | JX299533 | None | | | | I13V, L19P, K20I, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF02_AG |
| | EHR-19066 | EHR-19066 | JX299854 | None | | | V11I | I13V, K14R, K20I, M36L, N37S, R41K, L63P, H69K, L89I | CRF02_AG |
| | EHR-20913 | EHR-20913 | JX299885 | None | | | | I13V, K14R, G16E, K20I, M36I, R41K, K43R, L63P, L89M, I93L | CRF02_AG |
| | EHR-35412 | EHR-35412 | JX300134 | None | | | | I13V, K14R, G16E, K20I, M36I, N37S, R41K, L63P, H69K, K70R, L89M, I93L | CRF02_AG |
| | EHR-65581 | EHR-65581 | JX300646 | None | | | | I13V, K14R, G17E, K20I, E35D, M36I, Q61H, L63P, H69Q, K70Q, A71V, I72IT, V75VIM, I93L | CRF02_AG |
| | EHR-66158 | EHR-66158 | JX300655 | None | | | | I13V, K14R, G16E, K20I, M36I, R41K, R57K, L63P, H69K, L89M | CRF02_AG |
| | EHR-76234 | EHR-76234 | JX300844 | None | | | | I13A, K14R, K20I, M36I, R41K, L63P, H69K, K70KR, L89IM | CRF02_AG |
| | EHR-81383 | EHR-81383 | JX300929 | None | | | | L10LV, I13IV, K20I, M36I, N37NS, R41K, D60E, L63P, I64IV, H69Q | CRF02_AG |
| | EHR-85118 | EHR-85118 | JX300985 | None | | | | T12P, I13V, K14R, K20I, M36I, R41K, L63P, I66V, H69K, L89M | CRF02_AG |
| | EHR-86572 | EHR-86572 | JX301007 | None | | | | T12A, I13V, I15V, G16E, K20I, L23LP, M36I, N37X, P39S, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| | EHR-91603 | EHR-91603 | JX301072 | None | | | | I13V, K14R, G16E, K20I, M36I, P39S, L63P, H69K, K70R, L89M | CRF02_AG |
| | EHR-96856 | EHR-96856 | JX301134 | None | | | | I13V, K14R, G16E, K20I, M36I, R41K, K43R, L63P, L89M, I93L | CRF02_AG |
| Hawke (2013) | 15989247 | 15989247 | KC237957 | None | | | | I13V, K20I, M36I, P39L, R41K, L63P, H69K, K70R, V82I, L89M | CRF02_AG |
| | 20835856 | 20835856 | KC238049 | None | | | | I13V, K20I, M36I, P39L, R41K, L63P, H69K, K70R, V82I, L89M, T91TA, F99FL | CRF02_AG |
| | 22391692 | 22391692 | KC238073 | None | | | | I13A, I15IV, G17E, K20I, M36I, R41K, K43KR, Q61QHKN, L63P, H69K, K70KR, A71T, R87RG, L89I | CRF02_AG |
| | 4524144 H | 4524144 H | KC238159 | None | | | | I13V, K14R, K20I, D25DV, M36I, R41K, L63P, H69K, K70R, L89M | CRF02_AG |
| Tramuto (2013) | CV983_76 | CV983_76 | EF192305 | None | | | | L10I, I13V, L19P, K20I, M36I, R41K, L63P, H69Q, K70R, L89M | CRF02_AG |
| | CV1266_20 | CV1266_20 | HQ667675 | None | | | | I13V, K14R, L19P, K20I, M36I, N37ND, R41RK, K43R, L63P, H69K, L89IM | CRF02_AG |
| | CV1331_108 | CV1331_108 | HQ667701 | None | | | | I13V, K14R, G16E, K20I, M36I, R41K, L63P, H69K, L89M | CRF02_AG |