Protease Inhibitors

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Protease Inhibitors

Subtype	CRF01_AE
Gene	PR
Mutation	I93L
Rx	PI-naive
IncludeMixtures	No

References	84
Patients	740
Isolates	753

Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr)	Patient	Isolate	Acc#	PIs	PIMajorDRMs	PIMinorDRMs	OtherMut	Subtype
Cornelissen (1997)	92TH022	92TH022	AF009392	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Piyasirisilp (2000)	SP_2F	SP_2F	AY008714	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Caumont (2001)	AC36	AC36	AF326184	None			I13V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Fonjungo (2002)	CM93	CM93	AF406730	None			I13V, K20R, E35N, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	CM117	CM117	AF406709	None			I13V, K20R, E35D, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
Ariyoshi (2003)	JPN24	JPN24	AY900872	None		L33F	T12S, I13V, M36I, N37D, R41K, K45KE, H69K, K70R, L89M, I93L	CRF01_AE
Huang (2003)	NP1465	NP1465	AF447827	None			I15V, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Jorgensen (2003)	JLB_Pat33	HIM419459	AJ419459	None			I13V, L19LM, K20KR, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Lan (2003)	NTHvr103	NTHvr103	AY238268	None			G16E, E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	NTHvr122	NTHvr122	AY238229	None			I15IV, E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	NTHvr140	NTHvr140	AY238247	None			G16E, E35D, M36I, R41K, D60E, L63C, H69K, I72IV, L89M, I93L	CRF01_AE
	NTHvr150	NTHvr150	AY238145	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr151	NTHvr151	AY238255	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NTHvr164	NTHvr164	AY238266	None			I15V, G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NTHvr169	NTHvr169	AY238205	None			G16GE, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr171	NTHvr171	AY238207	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NTHvr177	NTHvr177	AY238147	None			G16E, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	NTHvr184	NTHvr184	AY238219	None			K14R, E35ED, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr185	NTHvr185	AY238220	None			I13V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr188	NTHvr188	AY238221	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr198	NTHvr198	AY238290	None			I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr38	NTHvr38	AY238185	None			G16E, E35D, M36I, R41K, L63C, H69K, T80TK, L89M, I93L	CRF01_AE
	NTHvr39	NTHvr39	AY238179	None			I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr44	NTHvr44	AY238150	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr45	NTHvr45	AY238187	None			G16E, L19R, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NTHvr52	NTHvr52	AY238194	None			G16A, K20KR, E35D, M36I, N37D, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	NTHvr53	NTHvr53	AY238151	None		L33F	E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr67	NTHvr67	AY238200	None			I13IV, T31TI, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NTHvr74	NTHvr74	AY238314	None			L10LP, G16E, L19LM, E35D, M36I, R41K, L63LV, H69K, P79PH, N83NY, L89M, I93L	CRF01_AE
	NTHvr75	NTHvr75	AY238315	None			I13IV, E35D, M36I, R41K, L63LP, H69K, V77I, V82I, L89M, I93L	CRF01_AE
	NTHvr98	NTHvr98	AY238310	None			G16E, E35D, M36I, R41K, L63A, H69K, L89M, I93L	CRF01_AE
Ramos (2003)	1269 12_69	1269 12_69	AF490973	None			L10I, I13V, E35D, M36I, R41K, L63P, E65G, I93L	CRF01_AE
	TH9_95	TH9_95	AF490974	None			I13V, E35D, M36I, N37D, R41K, L63P, I93L	CRF01_AE
	TH1326	TH1326	AY082968	None			T12P, L19V, E35D, L63P, I64V, I93L	CRF01_AE
Tovanabutra (2004)	00THOUR595I	00_595I	AY358052	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	01THOUR033I	01_033I	AY358071	None			E35D, M36I, R57K, H69K, V82I, I93L	CRF01_AE
	02THOUR846I	02_846I	AY358072	None			L63P, I93L	CRF01_AE
Hsu (2005)	LYH_AY870195	BAA161379	AY870195	None			T12I, G16E, K20R, E35D, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	LYH_AY870216	BAA161404	AY870216	None			I13V, G16E, E35D, M36I, G40GE, R41K, Q61QE, H69K, K70KR, L89M, I93L	CRF01_AE
	LYH_AY870218	BAA161407	AY870218	None		L33F	I13V, G16E, E35D, M36I, R41K, L63S, H69K, K70R, L89I, I93L	CRF01_AE
	LYH_AY870220	BAA161409	AY870220	None			I13V, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	BAA148360	BAA148360	AY870145	None			G16A, E35D, M36I, R41K, L63P, H69K, I72V, L89M, I93L	CRF01_AE
	BAA148364	BAA148364	AY870149	None			K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	BAA150620	BAA150620	AY870157	None			I13V, G16E, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	BAA161414	BAA161414	AY870224	None			I13V, I15V, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L	CRF01_AE
	BAA161440	BAA161440	AY870236	None			I13V, I15V, E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
Laeyendecker (2005)	Pingxiang-2	P2	AY635691	None			G16E, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	Pingxiang-187	P187	AY635710	None			T12A, I13V, G16E, E34*, E35D, M36I, R41K, K55M, H69K, L89M, I93L	CRF01_AE
	Pingxiang-201	P201	AY635711	None			T12TA, E34E*, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	Binyang-527	B527	AY635742	None			I13V, E35D, M36I, R41K, H69R, L89M, I93L	CRF01_AE
	Binyang-528	B528	AY635743	None			I13V, E34E*, E35D, M36I, R41K, H69R, L89M, I93L	CRF01_AE
Ly (2005)	NL_KHM_CA13	KHM_CA13	DQ013523	None			I15V, G16A, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NL_KHM_CA2	KHM_CA2	DQ013515	None			T12A, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NL_KHM_CA42	KHM_CA42	DQ013548	None			L19M, K20R, M36I, N37D, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NL_KHM_CA6	KHM_CA6	DQ013518	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	NL_KHM_CD14	KHM_CD14	DQ013644	None		L33F	I13V, K14R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NL_KHM_CD15	KHM_CD15	DQ013645	None			E35D, M36I, R41K, H69K, T74S, L89M, I93L	CRF01_AE
	NL_KHM_CD22	KHM_CD22	DQ013652	None			I13V, K20R, M36I, R41N, L63P, H69K, L89M, I93L	CRF01_AE
	NL_KHM_HM24	KHM_HM24	DQ013590	None			T12TA, I15V, K20R, E35D, M36I, R41K, Q61E, H69K, L89M, I93L	CRF01_AE
	NL_KHM_HM35	KHM_HM35	DQ013599	None			I13V, E35D, M36I, R41K, D60E, H69K, V77I, L89M, I93L	CRF01_AE
	NL_KHM_HM6	KHM_HM6	DQ013573	None			G16E, K20R, M36I, N37NT, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NL_KHM_HM7	KHM_HM7	DQ013574	None			K20R, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NL_KHM_SOS3	KHM_SOS3	DQ013612	None			I13V, K14R, G16E, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	NL_KHM_SOS6	KHM_SOS6	DQ013615	None			I15V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Tee (2005)	04MYKL1897	04_1897	AY904609	None			I13V, E35D, M36I, R41K, L63P, H69T, K70R, A71V, I72V, V77I, I93L	CRF01_AE
	03MYKL1579	03_1579	AY904566	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	04MYKL1756	04_1756	AY904595	None			I15V, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	04MYKL1612	04_1612	AY904565	None		L33F	I13V, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	03MYKL1401	03_1401	AY904524	None			E35D, M36I, R41K, I62V, L63P, H69K, L89M, I93L	CRF01_AE
	04MYKL1769	04_1769	AY904589	None			I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	04MYKL1770	04_1770	AY904596	None			I13V, E35D, M36I, R41K, K45R, H69K, L89M, I93L	CRF01_AE
Babic (2006)	DB_SI900-02	SI900-02	AJ971134	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Lindstrom (2006)	SIIDC0282	SIIDC0282		None			I13IV, G17E, K20R, E35D, M36I, R41K, H69K, I72V, L89M, I93L	CRF01_AE
Tee (2006)	MYKL1477	03MYKL1477	AY960938	None			I13V, E35N, M36I, R41K, Y59D, H69K, I72V, T74S, L89M, I93L	CRF01_AE
Tee (2006)	KL043	05_043.1	DQ366666	None			G16E, H69K, V77I, I93L	CRF01_AE
Watanaveeradej (2006)	99TH_C1080	99_C1080	AY945712	None			I13V, K20R, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
Gatanaga (2007)	C03-51110102-1	C03-51110102-1	AB640202	None			I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89M, I93L	CRF01_AE
	C03-51110118-1	C03-51110118-1	AB640218	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	C04-51110130-1	C04-51110130-1	AB640230	None			L10LI, I15V, K20KR, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	C04-51110194-1	C04-51110194-1	AB640294	None			E35D, M36I, R41K, L63LP, H69K, A71V, I93L	CRF01_AE
	C03-5555-5264-1	C03-5555-5264-1	AB640362	None			T12A, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	C04-5555-5972-1	C04-5555-5972-1	AB640408	None			I15V, K20R, E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	C04-5555-6124-1	C04-5555-6124-1	AB640430	None			I13V, G16E, M36I, R41RK, G49GE, D60E, L63LP, E65EK, H69K, K70R, L89M, I93L	CRF01_AE
	C03-2066158-1	C03-2066158-1	AB640467	None			I15V, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	C03-2066191-1	C03-2066191-1	AB640474	None			T12TI, I15V, K20IR, E35D, M36I, R41K, K45X, H69K, L89M, I93L	CRF01_AE
	C04-2066202-1	C04-2066202-1	AB640478	None			T12P, I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Hai-Long (2007)	Fj052	Fj052	EF036528	None			P9L, I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	Fj065	Fj065	EF036534	None			K20R, M36I, N37D, R41K, D60E, H69K, L89M, I93L	CRF01_AE
Han (2007)	LN40	02CNLN40	EF122524	None			I13V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M, I93L	CRF01_AE
	LN42	02CNLN42	EF122527	None			L19M, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN52	03CNLN52	EF122532	None			I13V, G16E, L19V, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	LN64	04CNLN64	EF122536	None			I13V, L19M, E35D, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	LN76	04CNLN76	EF122541	None			L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	LN59	03CNLN59	EF122554	None			T12P, K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Liu (2007)	fj13	fj13	EF432666	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	fj25	fj25	EF432671	None			I13V, K20R, M36I, R41K, H69K, N83S, L89M, I93L	CRF01_AE
	fj39	fj39	EF432674	None			I13V, E35D, M36I, R41K, K55R, L63P, H69K, L89M, I93L	CRF01_AE
	fj44	fj44	EF432677	None		L33F	I13V, M36I, R41K, L63I, H69K, V77I, L89M, I93L	CRF01_AE
	fj45	fj45	EF432678	None			E35D, M36I, R41K, H69K, T74S, L89M, I93L	CRF01_AE
	fj49	fj49	EF432682	None			G16E, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	fj52	fj52	EF432685	None			L10I, G16E, M36I, R41K, K43R, R57K, Q61D, A71T, I72R, I93L	CRF01_AE
	fj58	fj58	EF432688	None			M36I, N37D, R41K, H69R, L89M, I93L	CRF01_AE
	fj59	fj59	EF432689	None			E35D, M36I, R57K, H69K, V82I, L89M, I93L	CRF01_AE
	fj62	fj62	EF432692	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	fj63	fj63	EF432693	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	fj74	fj74	EF432698	None			I13V, M36I, R41K, L63P, H69K, K70R, T74S, L89M, I93L	CRF01_AE
	fj75	fj75	EF432699	None			E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	fj76	fj76	EF432700	None			I13V, M36I, R41K, H69R, L89M, I93L	CRF01_AE
	fj80	fj80	EF432704	None			K14R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	fj93	fj93	EF432709	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	fj96	fj96	EF432711	None			I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
	fj18	fj18	EF432716	None			K20R, E35D, M36I, N37D, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	fj06	fj06	EF432717	None			K20R, E35D, M36I, N37D, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	fj03	fj03	EF432725	None		L33F	I13V, K14R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Liu (2007)	SH070	SH070	EU079109	None			I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Zhong (2007)	D0010	05CN_010	EF199557	None			Q2H, E35D, M36I, R41K, L63S, I64M, H69K, L89M, I93L	CRF01_AE
	D0024	05CN_024	EF199566	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	D0027	05CN_027	EF199569	None			M36I, R41K, L63S, H69K, K70R, L89M, I93L	CRF01_AE
	D0055	05CN_055	EF199587	None			K20R, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	D0061	05CN_061	EF199592	None			K20R, E35D, M36I, R41K, L63S, H69K, K70R, V82I, L89M, I93L	CRF01_AE
	D0086	05CN_086	EF199614	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	D0088	05CN_088	EF199616	None			K20R, E35D, M36I, R41K, L63S, H69K, K70R, V82I, L89M, I93L	CRF01_AE
Bang (2008)	003	BJH_003	EF157859	None			K20R, E35ED, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
Chang (2008)	TW0103a	TW0103a		None			I13V, K20R, M36I, R41K, K55X, L63P, H69K, L89M, I93L	CRF01_AE
	TW0378a	TW0378a		None			I13V, G16E, K20R, E35D, M36I, R41K, K43KR, K45R, L63P, H69K, L89IM, I93L	CRF01_AE
	TW10076a	TW10076a		None			K20R, E35D, M36I, R41K, I54X, H69K, L89M, I93L	CRF01_AE
	TW10277a	TW10277a		None			I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
	TW10350a	TW10350a		None			T12P, E35D, M36I, R41K, L63P, I93L	CRF01_AE
	TW10440a	TW10440a		None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	TW10446a	TW10446a		None			I13V, I15V, E35D, M36I, R41K, H69K, T74X, L89M, I93L	CRF01_AE
	TW9940a	TW9940a		None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	TW10566a	TW10566a		None			I13V, I15V, E35D, M36I, R41K, L63X, H69K, L89M, T91V, I93L	CRF01_AE
	TW5297a	TW5297a		None			L5F, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	TW11115a	TW11115a		None			G17R, L19M, K20R, M36I, N37D, R41K, H69K, N83H, L89M, I93L	CRF01_AE
	TW7700a	TW7700a		None			I13V, G16E, K20R, E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
Holguin (2008)	SP41-58559	SP41-58559	EU342821	None			T12S, K14R, I15V, L19V, K20R, M36I, R41K, R57K, Q61H, L63T, H69K, L89M, I93L	CRF01_AE
Ibe (2008)	261	261	AB356105	None		L33F	T4TS, I13V, M36I, R41K, H69K, K70R, V77VI, L89M, I93L	CRF01_AE
	115	115	AB356173	None			T12A, I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	164	164	AB356211	None			E35D, M36I, R41K, L63P, H69K, I72V, T74S, V77I, L89M, I93L	CRF01_AE
	209	209	AB356240	None			I13V, I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	234	234	AB356261	None			K14KR, I15IV, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	458	458	AB356421	None			M36I, R41K, H69K, L89M, I93L	CRF01_AE
Nguyen (2008)	001	VN001		None			I13V, E35D, M36I, R41K, H69K, T74S, L89M, I93L, F99X	CRF01_AE
	013	VN013		None			M36I, R41K, L63P, H69K, L89M, I93L, F99X	CRF01_AE
	015	VN015		None			E35D, M36I, R41K, L63LP, H69K, L89M, I93L, F99X	CRF01_AE
	030	VN030		None			I13V, G16E, K20I, M36I, R41K, G52X, H69K, K70R, T74A, L89M, I93L	CRF01_AE
	033	VN033		None			I13V, K20R, M36I, R41K, G68X, H69K, A71G, V82I, L89M, I93L, F99X	CRF01_AE
	049	VN049		None			G16E, E35D, M36I, R41K, L63LIPT, H69K, L89M, I93L, F99X	CRF01_AE
	052	VN052		None			I13V, E35D, M36I, R41K, H69K, L89M, I93L, F99X	CRF01_AE
Riddler (2008)	81177	520793Ib		None			G16E, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
Sirivichayakul (2008)	BED-9	BED-9Pr	JQ364267	None			I13V, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
	BED-11	BED-11Pr	JQ364269	None			K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	BED-31	BED-31Pr	JQ364283	None			E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	BED-32	BED-32Pr	JQ364284	None			G16E, E35N, M36I, R41K, L63S, H69K, I72V, I93L	CRF01_AE
	BED-35	BED-35Pr	JQ364287	None			E35D, M36I, R41K, Q61E, L63P, H69K, I72M, L89M, I93L	CRF01_AE
	BED-36	BED-36Pr	JQ364288	None			G16E, E35N, M36V, R41K, L63S, H69K, L89M, I93L	CRF01_AE
	BED-41	BED-41Pr	JQ364293	None			I13V, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
	BED-42	BED-42Pr	JQ364294	None			I13V, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
	BED-48	BED-48Pr	JQ364298	None			L10I, I13V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	NBC-45	NBC-45Pr	JQ364343	None			E35D, M36I, R41K, L63T, H69K, V82I, L89M, I93L	CRF01_AE
Wang (2008)	CYM009	CYM009	EU921960	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Auwanit (2009)	21	AE-PR21		None			I13V, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	69	AE-PR69	FJ463522	None			E35D, M36I, R41K, Q61QH, L63P, H69K, L89M, I93L	CRF01_AE
	91	AE-PR91	FJ463527	None			I13V, I15V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	111	AE-PR111	FJ463533	None			K20R, E35D, M36I, R41K, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
Ayouba (2009)	FD0323	FD0323PI	GQ352058	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	FD0457	FD0457PI	GQ352067	None			K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	FD0524	FD0524PI	GQ352074	None			G16E, E35D, M36I, R41K, R57K, H69K, K70R, L89M, I93L	CRF01_AE
	FD0527	FD0527PI	GQ352077	None			I15V, G16E, K20R, E35D, M36I, H69K, L89M, I93L	CRF01_AE
	FD0651	FD0651PI	GQ352091	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	FD0671	FD0671PI	GQ352092	None			I13V, K20R, E35ED, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	FD0837	FD0837PI	GQ352103	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	R22	R22_PR	GQ352123	None			G16E, E35D, M36I, R41KN, K43R, L63C, H69K, L89M, I93L	CRF01_AE
	R29	R29_PR	GQ352130	None			I13V, I15V, L19Q, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	R32	R32_PR	GQ352133	None			I13V, I15V, K20I, M36I, R41K, L63P, H69K, V82I, L89M, I93L	CRF01_AE
	R33	R33_PR	GQ352134	None			I13V, I15V, E35D, M36I, R41RK, I66IF, H69K, K70KE, V82I, I85IV, L89M, I93L	CRF01_AE
	R37	R37_PR	GQ352138	None			I15V, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L	CRF01_AE
	R46	R46_PR	GQ352145	None			I13V, E35D, M36I, R41K, R57K, L63C, H69K, L89M, I93L	CRF01_AE
	R55	R55_PR	GQ352153	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	R63	R63_PR	GQ352161	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	R71	R71_PR	GQ352165	None			I15IV, G16E, K20KR, E35D, M36I, R41K, L63C, H69K, K70R, L89M, I93L	CRF01_AE
	R72	R72_PR	GQ352166	None			I15V, G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
Brumme (2009)	M6571	M6571	GQ372015	None			E35D, M36I, R41K, R57RK, L63P, H69K, L89M, I93L	CRF01_AE
	Q9575	Q9575	GQ372120	None			E35ED, M36I, R41K, R57RK, L63P, H69K, L89M, I93L	CRF01_AE
Castillo (2009)	14	14PROT	GQ202901	None			K14R, G16E, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
Cuevas (2009)	X2721_1	X2721_1	GU326188	None			I13V, M36I, P39S, R41K, D60E, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
Fujisaki (2009)	709	709	AB442352	None			I13V, I15V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Ishizaki (2009)	C2	C2g	FJ006952	None			K14R, G16E, K20R, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	C11	C11g	FJ006956	None			I13V, G16A, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	C19	C19	FJ006962	None			I15V, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	C25	C25	FJ006967	None			I13V, E35D, M36I, R41K, H69K, T74S, L89M, I93L	CRF01_AE
	C78	C78ca	FJ006979	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A2_67	A2_67	FJ006999	None			K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A2_103	A2_103t	FJ007006	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A2_129	A2_129	FJ007011	None			E35D, M36I, R41K, L63T, H69K, L89M, I93L	CRF01_AE
	A2_168	A2_168ta	FJ007022	None			M36L, N37T, R41K, H69K, L89M, I93L	CRF01_AE
	A2_231	A2_231	FJ007043	None			M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A2_236	A2_236aa	FJ007045	None			I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	A2_245	A2_245g	FJ007053	None			G16E, E35D, M36I, R41K, H69K, I72V, L89M, I93L	CRF01_AE
	A2_362	A2_362a	FJ007075	None			G16E, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	A2_470	A2_470	FJ007108	None			E35D, M36I, N37D, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A64	A64a	FJ007134	None			I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	A75	A75ag	FJ007138	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A78	A78g	FJ007140	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A101	A101g	FJ007151	None			M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A132	A132a	FJ007165	None			I13V, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A167	A167gg	FJ007185	None			M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A199	A199	FJ007208	None			K20R, E35D, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	A203	A203	FJ007211	None			L19M, E35D, M36I, R41K, H69K, K70R, V82I, L89M, I93L	CRF01_AE
	A219	A219	FJ007216	None			I15V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A244	A244gaga	FJ007231	None			M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A246	A246	FJ007234	None			M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A248	A248	FJ007235	None			I13V, E35D, M36I, R41K, K45R, H69K, A71T, L89M, I93L	CRF01_AE
	A287	A287	FJ007255	None			G16E, E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	A298	A298	FJ007262	None			I13V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A315	A315	FJ007268	None			I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A321	A321	FJ007273	None			G16A, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A323	A323g	FJ007274	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A361	A361a-07	FJ007298	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A368	A368c	FJ007300	None			G16A, E35D, M36I, R41K, R57K, L63C, H69K, L89M, I93L	CRF01_AE
	A388	A388ct	FJ007305	None			I13V, M36I, R41K, L63P, H69K, T74S, L89M, I93L	CRF01_AE
	A408	A408	FJ007319	None			G16E, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
	A442	A442aga	FJ007329	None			G16E, E35D, M36I, R41K, D60E, L63P, H69K, L89M, I93L	CRF01_AE
	A452	A452	FJ007332	None			I13V, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A458	A458g	FJ007334	None			G16A, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A496	A496	FJ007345	None			I15V, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	A2_90	A2_90	FJ007364	None			I13V, E35D, M36I, R41K, H69K, A71V, L89M, I93L	CRF01_AE
	A2_367	A2_367a	FJ007366	None			G16E, L19MV, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
Lee (2009)	S07004	S07004	EU715178	None			I13V, K20KR, E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	S07026	S07026	EU715185	None			K20R, E35D, M36I, R41K, R57K, H69K, V77I, L89M, I93L, L97I	CRF01_AE
	S07041	S07041	EU715190	None			I13V, I15IV, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	S07047	S07047	EU715221	None			I13V, E35D, M36I, R41K, H69K, L89M, I93L, L97I	CRF01_AE
	S07057	S07057	EU715231	None			K14KR, G16GA, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Luo (2009)	wh.1466	05HBwh.1466	FJ375090	None			I13V, G17E, K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
Nouhin (2009)	KC14	KC14PROT	FJ531951	None			L5LF, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L	CRF01_AE
	KC17	KC17PROT	FJ531954	None			L5LF, L19LV, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	KC21	KC21PROT	FJ531958	None			I13V, G17E, K20R, M36I, L63C, H69K, L89M, I93L	CRF01_AE
	KC23	KC23PROT	FJ531960	None			M36D_*, R41K, H69K, I72V, L89M, I93L	CRF01_AE
	KC27	KC27PROT	FJ531964	None			I15V, E35D, M36I, R41K, G51GA, H69K, V82I, L89M, I93L	CRF01_AE
	KC32	KC32PROT	FJ531969	None			I13V, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	KC38	KC38PROT	FJ531972	None			G16E, E35D, M36I, R41K, D60E, H69K, K70R, L89M, I93L	CRF01_AE
	KC40	KC40PROT	FJ531974	None	V82VL		G16E, G17GR, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	KC41	KC41PROT	FJ531975	None			L5LF, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	KC44	KC44PROT	FJ531978	None			L5LF, E21EK, E34EK, E35D, M36I, R41K, C67CW, H69K, L89M, I93L	CRF01_AE
	KC55	KC55PROT	FJ531988	None			L5LF, I15Y, E35N, M36I, R41K, L63C, H69K, V82I, L89M, I93L	CRF01_AE
	KC56	KC56PROT	FJ531989	None			L10LV, I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	KC64	KC64PROT	FJ531996	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Tu (2009)	5	PBMC5	EU518254	None			I13V, E35D, M36I, R41K, H69R, L89M, I93L	CRF01_AE
		plasma5	EU518303	None			I13V, E35D, M36I, R41K, H69R, L89M, I93L	CRF01_AE
	7	PBMC7	EU518256	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
		plasma7	EU518305	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Vercauteren (2009)	pt2184	119654565	GQ398840	None			E35D, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	pt2134	436137206	GQ398890	None			I13V, E35D, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
	pt1890	1967767053	GQ399134	None			K20KR, E35D, M36I, R41K, L63PS, H69K, L89M, I93L	CRF01_AE
	pt1748	2911024973	GQ399276	None		L33LF	I13V, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	pt1672	3311242754	GQ399352	None			L10V, I13V, G16E, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	pt1636	3560275832	GQ399388	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	pt1339	5208160299	GQ399685	None			I13V, K14R, I15V, M36I, R41K, D60E, L63P, C67Y, H69K, V82I, L89M, I93L	CRF01_AE
	pt1288	5461870282	GQ399736	None			I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	pt938	7618622649	GQ400086	None			E35D, M36I, R41K, K45KR, L63P, H69K, L89M, I93L	CRF01_AE
	pt676	8lbpiAqEsc	GQ400348	None			K45KR, L63P, H69K, L89M, I93L	CRF01_AE
	pt472	ajoMqRKfDo	GQ400552	None			K20R, E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	pt444	cLYp616hEj	GQ400580	None			W6G, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	pt411	F5vimU1WoQ	GQ400613	None			L19I, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	pt355	hZk8m1sWVV	GQ400669	None			E35D, M36I, R41K, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
	pt323	JULc9Y2qzk	GQ400701	None			E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	pt285	lPONbZRtMk	GQ400739	None			E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	pt40	Y4c4OC8AQS	GQ400984	None			I13V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Chin (2010)	C066	C066	GQ290704	None			I13V, G17E, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	C074	C074	GQ290707	None			I13V, G16A, L19M, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	K219	K219	GQ290740	None			I13V, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Djoko (2010)	GQ404	08GQ404	FN557338	None			T12S, I15V, L19V, K20R, E35D, M36I, R41K, R57K, Q61H, L63V, I64M, H69K, L89M, I93L	CRF01_AE
Gonzalez (2010)	924_M00m	924_M00m	GQ427111	None			I13V, G16E, K20R, E35D, M36I, R41K, L63V, H69K, L89M, T91V, I93L	CRF01_AE
Han (2010)	LN090	LN090	FJ531406	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN103	LN103	FJ531408	None			G16E, L19V, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN109	LN109	FJ531411	None			I13V, L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	LN112	LN112	FJ531413	None			I13V, L19M, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	LN114	LN114	FJ531415	None			I13V, G16A, L19M, E35D, M36I, R41K, R57K, L63P, H69K, L89M, I93L	CRF01_AE
	LN116	LN116	FJ531417	None			I13V, I15V, L19M, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN121	LN121	FJ531418	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN122	LN122	FJ531419	None			T12P, L19M, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	LN128	LN128	FJ531424	None			I13V, G16E, L19I, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN132	LN132	FJ531425	None			I13V, L19M, E35D, M36I, R41K, R57K, H69K, V82I, L89M, I93L	CRF01_AE
	LN138	LN138	FJ531428	None		L33F	I13V, G16A, L19M, E35D, M36I, R41K, G68E, H69K, K70R, L89M, I93L	CRF01_AE
	LN153	LN153	FJ531429	None			G16E, L19M, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN175	LN175	FJ531431	None			G16E, L19M, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LN176	LN176	FJ531432	None			L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	LN179	LN179	FJ531434	None			I13V, G16E, L19V, E35D, M36I, R41K, L63V, H69K, K70R, L89M, I93L	CRF01_AE
	LN187	LN187	FJ531436	None			I13V, L19M, E35X, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	LN203	LN203	FJ531441	None			L19M, E35D, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	SY023	SY023	FJ531442	None			I13V, L19M, K20R, E35D, M36I, R41K, H69K, K70R, V82I, L89M, I93L	CRF01_AE
	SY041	SY041	FJ531443	None			L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	SY123	SY123	FJ531444	None			G16E, L19M, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	SY147	SY147	FJ531445	None			L19M, E35D, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	LN106	LN106	FJ531447	None			I13V, G16E, L19V, E35D, M36I, R41K, L63V, H69K, K70R, L89M, I93L	CRF01_AE
	LN104	LN104	FJ531449	None			L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	LN152	LN152	FJ531454	None			I13V, L19M, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M, I93L	CRF01_AE
	SY40	SY40	FJ531459	None			L19M, E35D, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
Jullaksorn (2010)	CR19	CR19-Apr08D	GQ857297	None			G16E, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
		CR19-Oct08D	GQ857361	None			G16E, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
		CR19-Jan09D	GQ857394	None			G16E, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
		CR19-Apr09D	GQ857425	None			G16E, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
	CR25	CR25-Apr08D	GQ857303	None			E35D, M36I, R41K, K43R, L63P, H69K, L89M, I93L	CRF01_AE
		CR25-Jul08D	GQ857335	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
		CR25-Oct08D	GQ857366	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
		CR25-Jan09D	GQ857400	None			G17E, E35D, M36I, R41K, K45R, G49E, L63P, E65K, H69K, L89M, I93L	CRF01_AE
	CR14	CR14-Jul08R	GQ857325	None			E35D, M36I, R41K, R57K, I62V, H69R, L89M, I93L	CRF01_AE
		CR14-Oct08R	GQ857356	None			E35D, M36I, R41K, I62V, H69R, L89M, I93L	CRF01_AE
		CR14-Jan09R	GQ857389	None			E35D, M36I, R41K, I62V, H69R, L89M, I93L	CRF01_AE
		CR14-Apr09D	GQ857420	None			E35D, M36I, R41K, I62V, H69R, L89M, I93L	CRF01_AE
Phan (2010)	ND16	ND16	AB519457	None			G16A, E35D, M36I, D60E, H69K, L89M, I93L	CRF01_AE
	ND24	ND24	AB519460	None			I15V, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	O901	O901	AB519473	None			K20R, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	O907	O907	AB519478	None			G16E, L19I, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	O913	O913	AB519484	None			M36I, N37D, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	O917	O917	AB519488	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	O918	O918	AB519489	None			I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	O924	O924	AB519495	None			K20R, D25H, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	O930	O930	AB519501	None			I13V, K14R, G16A, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	O934	O934	AB519505	None			G16E, E35D, M36I, R41K, L63C, H69K, I93L	CRF01_AE
	O943	O943	AB519513	None			E35R, M36I, R41K, L63P, H69K, V82I, L89M, I93L	CRF01_AE
	O944	O944	AB519514	None			I13V, G16E, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	NB01	NB01	AB519523	None			I15V, G16E, E35D, M36I, R41K, H69R, V77I, V82I, L89M, I93L	CRF01_AE
	NB14	NB14	AB519531	None			G16E, K20R, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NB18	NB18	AB519533	None			G16E, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	NB21	NB21	AB519534	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NB35	NB35	AB519543	None			M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	NB54	NB54	AB519556	None			K20R, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	AH02	AH02	AB519559	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AH04	AH04	AB519561	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AH08	AH08	AB519565	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AH13	AH13	AB519568	None			R8Q, I13V, E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	AH19	AH19	AB519571	None			I13V, K14R, M36I, R41K, L63P, H69K, V82I, L89M, I93L	CRF01_AE
	AH32	AH32	AB519581	None			I15V, G16E, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AH35	AH35	AB519584	None			K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	AH42	AH42	AB519589	None			I15V, E35D, M36I, R41K, H69K, T74S, L89M, I93L	CRF01_AE
	AH49	AH49	AB519595	None			I13V, K20R, M36I, N37D, R41K, K43R, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
	ND27	ND27	AB519600	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	ND33	ND33	AB519602	None			T12I, G16E, E35D, M36I, N37D, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	NB19	NB19	AB519612	None			E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	NB29	NB29	AB519615	None			G16E, E35D, M36I, N37K, P39S, R41K, R57K, L63C, H69K, L89M, I93L	CRF01_AE
	NB41	NB41	AB519618	None			G16A, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	NB50	NB50	AB519619	None			G16E, E35D, M36I, P39T, R41K, H69K, L89M, I93L	CRF01_AE
	NB53	NB53	AB519621	None			I15V, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AH20	AH20	AB519623	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Selimova (2010)	40MOSR	40MOSR	HM345569	None			E35ED, M36I, R41K, L63T, H69K, L89M, I93L	CRF01_AE
Zhang (2010)	06112	CNsd06112	GQ443552	None			I13V, K20R, M36I, R41K, L63LP, H69K, K70R, V82I, L89M, I93L	CRF01_AE
	0518	CNsd0518	GQ443554	None			E35D, M36I, R41K, H69K, T74S, L89M, I93L	CRF01_AE
	06113	CNsd06113	GQ443588	None			I13V, K20R, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
Zolfo (2010)	A14013	A 14013 M30	HM565665	None			T12A, K20R, M36I, R41K, D60E, L63T, I64L, H69K, L89M, I93L	CRF01_AE
	A14064	A 14064 M12	HM565677	None			M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	A15720	A 15720 M6	HM565680	None			I15V, G16A, K20KR, E35ED, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A14608	A 14608 M12	HM565686	None			Q7R, G16E, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	A13524	A 13524 M12	HM565698	None			K14R, K20R, E35D, M36I, N37D, R41K, L63P, H69K, K70KR, L89M, I93L, G94GDNS	CRF01_AE
		A 13524 M24	HM565631	None			K14R, K20R, E35D, M36I, N37D, R41K, K43KR, L63PS, H69K, K70KR, L89M, I93L	CRF01_AE
	A13822	A 13822 RS	HM565733	None			I15V, E35D, M36I, R41K, H69K, V82VI, L89M, I93L	CRF01_AE
		A 13822 M24	HM565636	None			I15V, E35D, M36I, R41K, H69K, V82VI, L89M, I93L	CRF01_AE
Aghokeng (2011)	SK7004-PI	SK7004-PI	HQ864344	None			I13V, K14KR, E35D, M36I, R41K, D60E, H69K, I72V, L89M, I93L	CRF01_AE
Avi (2011)	086u	086u	GQ926649	None			L10I, I13V, K14R, E35D, M36I, R41K, D60E, L63T, I64L, H69K, L89M, I93L	CRF01_AE
Bontell (2011)	Pat062	08.VL731Hs	HQ852854	None			I13V, K20R, M36I, N37D, R41K, L63H, H69K, K70R, L89M, I93L	CRF01_AE
	Pat061	08.VL732Hi	HQ852855	None			I13IV, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	Pat060	08.VL733Hs	HQ852856	None			M36I, N37D, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	Pat055	08.VL746Hi	HQ852861	None			K20R, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	Pat030	09.VL840Yi	HQ852886	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	Pat022	09.VL954Hs	HQ852894	None			I15V, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	Pat008	09.VL977Ui	HQ852908	None			K20R, M36I, N37ND, R41K, H69K, L89M, I93L	CRF01_AE
	Pat005	09.VL983Us	HQ852911	None			G16E, M36I, R41K, L63T, H69K, L89M, I93L	CRF01_AE
	Pat003	09.VL985Ui	HQ852913	None			I15V, G16E, E35D, M36I, R41K, L63C, H69K, T74S, L89M, I93L	CRF01_AE
Dean (2011)	IVVI0053	IVVI0053	JQ312333	None			E35D, M36I, R41K, Y59F, L63P, H69K, L89M, I93L	CRF01_AE
	IVVI0121	IVVI0121	JQ312343	None			G16E, L33LV, E35D, M36I, G40GE, R41K, R57K, D60E, Q61E, H69K, L89M, I93L	CRF01_AE
	IVVI0145	IVVI0145	JQ312348	None			L10LI, I13IV, K14R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	IVVI0159	IVVI0159	JQ312351	None			I13V, G16E, K20R, M36I, N37D, R41K, L63PS, H69K, L89LM, I93L	CRF01_AE
	IVVI0175	IVVI0175	JQ312353	None			M36I, R41K, H69K, L89M, I93L	CRF01_AE
	IVVI0189	IVVI0189	JQ312357	None			G16E, E35D, M36I, R41K, R57K, D60E, Q61E, H69K, L89M, I93L	CRF01_AE
	IVVI0190	IVVI0190	JQ312358	None			K14R, I15V, G16E, E35D, M36I, R41K, R57K, H69K, I72IV, L89M, I93L	CRF01_AE
	IVVI0198	IVVI0198	JQ312360	None			K14R, I15V, G16AE, E35D, M36I, R41K, R57K, H69K, I72IV, L89M, I93L	CRF01_AE
	IVVI0199	IVVI0199	JQ312361	None			T4TI, L5LF, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	IVVI0348	IVVI0348	JQ312368	None			E35D, M36I, R41K, Q61QE, L63PS, H69K, L89M, I93L	CRF01_AE
	IVVI1970	IVVI1970	JQ312377	None			E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	IVVI2035	IVVI2035	JQ312384	None			M36I, R41K, L63P, H69K, L89LM, I93L	CRF01_AE
	IVVI3728	IVVI3728	JQ312392	None			I13IV, G16E, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	IVVI5455	IVVI5455	JQ312398	None		K43KT	I15V, G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	IVVI5543	IVVI5543	JQ312399	None			I15IV, G16E, K20R, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	IVVI5575	IVVI5575	JQ312400	None			G16E, E35D, M36I, R41K, L63C, H69K, L89LM, I93L	CRF01_AE
	IVVI7005	IVVI7005	JQ312401	None			G16E, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	IVVI7239	IVVI7239	JQ312412	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	IVVI7272	IVVI7272	JQ312414	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	IVVI7292	IVVI7292	JQ312416	None			G16E, K20R, E35D, M36I, R41K, K45KR, L63C, H69K, L89LM, I93L	CRF01_AE
	IVVI7390	IVVI7390	JQ312419	None			T12TA, I15IV, G16E, E35N, M36I, R41K, R57K, L63C, H69K, I93L	CRF01_AE
	IVVI7396	IVVI7396	JQ312421	None			L10V, K14R, G16E, M36I, N37D, R41K, L63T, H69K, L89M, I93L	CRF01_AE
Hamers (2011)	CP076301574	CP076301574	HQ993614	None			I3L, L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63V, G68E, H69K, T74A, L89M, T91V, I93L	CRF01_AE
Kao (2011)	Pat226	27956	HQ657814	None			I15V, G16E, L19M, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	Pat183	35886	HQ657857	None			I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	Pat181	35912	HQ657859	None			G16GE, E35ED, M36I, R41K, Q61QE, L63LP, H69K, K70KR, L89M, I93L	CRF01_AE
	Pat159	36083	HQ657881	None			I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	Pat053	36599	HQ657987	None			I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	Pat050	36627	HQ657990	None			L10V, I13V, G16E, M36I, R41K, K45R, L63H, H69K, K70R, L89M, I93L	CRF01_AE
Lazaro (2011)	AG-M2	AG-M2	HQ542613	None		V11I	I13V, G16E, K20I, E35D, M36L, R41K, Q61E, H69K, K70R, L89M, I93L	CRF01_AE
	VT-M9	VT-M9	HQ542638	None			I13V, E35D, M36IT, R41K, L63P, H69K, K70R, A71V, L89M, I93L	CRF01_AE
	AG-M15	AG-M15	HQ542625	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AG-M23	AG-M23	HQ542631	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AG-M25	AG-M25	HQ542633	None			I13V, K20R, M36I, R41K, K45KR, H69K, K70R, V82I, L89M, I93L	CRF01_AE
	VT-M2	VT-M2	HQ542634	None		L33F	G16E, K20R, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	VT-M8	VT-M8	HQ542637	None			I15V, G16E, K20R, E35D, M36I, R41K, L63C, H69K, I93L	CRF01_AE
	VT-M19	VT-M19	HQ542647	None			G16E, E35D, M36I, R41K, L63C, H69K, V82VI, L89M, I93L	CRF01_AE
	VT-M24	VT-M24	HQ542652	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	DN-M9	DN-M9	HQ542660	None			T12TA, I15V, G16E, E35D, M36IT, R41K, D60E, L63C, E65EQ, H69K, L89M, I93L	CRF01_AE
	DN-M11	DN-M11	HQ542662	None			I13V, G16A, M36I, N37D, R41K, P44PS, H69K, K70R, L89M, I93L	CRF01_AE
	DN-M13	DN-M13	HQ542664	None			I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	DN-M15	DN-M15	HQ542665	None			G16E, E35D, M36I, K45R, L63P, H69K, L89M, I93L	CRF01_AE
	DN-M16	DN-M16	HQ542666	None			G16E, K20KR, E35ED, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	DN-M18	DN-M18	HQ542667	None			T4N, L10LI, I13V, K14R, G16GE, M36I, R41K, D60E, Q61QE, L63P, H69K, L89M, I93L	CRF01_AE
	TG-M8	TG-M8	HQ542678	None			G16A, K20R, E35D, M36I, N37DE, L63C, H69K, L89LM, I93L	CRF01_AE
	TG-M16	TG-M16	HQ542684	None		L33F	I13V, G16A, M36I, N37D, R41K, L63F, H69K, L89M, I93L, L97P	CRF01_AE
	TG-M23	TG-M23	HQ542689	None			I15V, K20R, E35D, M36I, N37D, R41K, H69K, V82VI, L89M, I93L	CRF01_AE
	DT-M9	DT-M9	HQ542695	None			I13IV, I15V, E35D, M36I, R41K, R57K, L63P, H69K, L89M, T91TN, I93L	CRF01_AE
	DT-M10	DT-M10	HQ542696	None			I13V, I15V, E35D, M36I, R41K, R57K, L63V, I64M, H69K, L89M, I93L	CRF01_AE
	DT-M15	DT-M15	HQ542700	None			G16E, E35D, M36I, R41K, K43R, L63C, H69K, L89M, I93L	CRF01_AE
	DT-M17	DT-M17	HQ542702	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	DT-M18	DT-M18	HQ542703	None			G16E, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	DT-M19	DT-M19	HQ542704	None			I15IV, E35D, M36I, R41K, K43KN, R57K, H69K, L89M, I93L	CRF01_AE
Ng (2011)	FREE002	FREE002	HQ539007	None			I13V, K20R, M36I, N37D, Q61E, L63P, H69K, L89M, I93L	CRF01_AE
	FREE024	FREE024	HQ539016	None			I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	FREE061	FREE061	HQ539028	None			I13V, I15V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	FREE065	FREE065	HQ539030	None		L33F	I13V, G16E, N37S, P39S, L63S, H69K, K70R, L89M, I93L	CRF01_AE
	HM003	HM003	HQ539038	None			I13V, K20R, E35D, M36I, R41K, L63P, H69K, L89M, Q92H, I93L	CRF01_AE
	HM017	HM017	HQ539052	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HM031	HM031	HQ539065	None			D25N, E34K, E35D, M36I, R41K, K45R, H69R, L89M, I93L	CRF01_AE
	HM032	HM032	HQ539066	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	HM038	HM038	HQ539071	None			I13V, G16E, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	HM041	HM041	HQ539074	None			G16A, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M, I93L	CRF01_AE
	HM051	HM051	HQ539084	None			I13V, G16E, K20R, E35D, M36I, P39S, R41K, K45R, L63P, H69K, L89M, I93L	CRF01_AE
	HM069	HM069	HQ539098	None			E35D, M36I, R41K, L63T, H69K, L89M, I93L	CRF01_AE
	HM089	HM089	HQ539117	None			T12P, I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	HM102	HM102	HQ539128	None			K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	HM119	HM119	HQ539144	None			I13V, I15V, G16E, K20R, E35D, M36I, R57K, D60E, L63S, H69K, L89M, I93L	CRF01_AE
	HM128	HM128	HQ539153	None			G16E, K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	HM155	HM155	HQ539180	None			I13V, M36I, D60E, H69K, L89M, I93L	CRF01_AE
	MOVL224	MOVL224	HQ539203	None			I13V, I15V, G16E, K20R, E35D, M36I, R57K, D60E, L63S, H69K, L89M, I93L	CRF01_AE
Ngo-Giang-Huong (2011)	PHPT0279	PHPT0279PR-RT	HQ996514	None			G16A, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	PHPT4352	PHPT4352PR-RT	HQ996515	None			T12A, K14R, I15IV, G16GA, Q18QL, M36D, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	PHPT1796	PHPT1796PR-RT	HQ996520	None			K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Su (2011)	LZ2006	LZ2006	HQ588182	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LZ2055	LZ2055	HQ588197	None			I13V, M36I, R41K, H69K, K70R, T74S, L89M, I93L, G94A	CRF01_AE
	LZ2082	LZ2082	HQ588202	None			I13V, M36I, R57K, L63D, H69R, I72T, L89M, I93L	CRF01_AE
	LZ2093	LZ2093	HQ588204	None			K20R, E35D, M36I, N37D, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	LZ2101	LZ2101	HQ588207	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LZ2108	LZ2108	HQ588209	None			G16A, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LZ2110	LZ2110	HQ588210	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LZ2112	LZ2112	HQ588212	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LZ2121	LZ2121	HQ588215	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	LZ2123	LZ2123	HQ588216	None			T12A, I13V, M36I, R41K, H69R, V77I, L89M, I93L	CRF01_AE
	LZ2130	LZ2130	HQ588217	None			T12A, I13V, M36I, R41K, H69R, V77I, L89M, I93L	CRF01_AE
	LZ2131	LZ2131	HQ588218	None			E35D, M36I, R41K, Q61E, H69K, L89M, I93L	CRF01_AE
	LZ2138	LZ2138	HQ588220	None			E35A, M36I, R41K, V56A, R57K, L63P, H69K, G78D, T80R, L89M, I93L	CRF01_AE
	LZ2140	LZ2140	HQ588221	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	LZ2148	LZ2148	HQ588224	None			E35D, M36I, R41K, L63P, I64M, H69K, L89M, I93L	CRF01_AE
	LZ2151	LZ2151	HQ588225	None			L10V, I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	LZ2161	LZ2161	HQ588227	None			E35D, M36I, R41K, I64V, H69K, L89M, I93L	CRF01_AE
	LZ2162	LZ2162	HQ588228	None			E35D, M36I, R41K, Q61E, H69K, L89M, I93L	CRF01_AE
	LZ2168	LZ2168	HQ588231	None			I13V, G16E, K20R, E35D, M36I, R41K, L63V, H69K, I72V, L89M, I93L	CRF01_AE
	GXNN5851	GXNN5851	HQ588234	None			I13V, M36I, R41K, H69R, L89M, I93L	CRF01_AE
	GXNN5927	GXNN5927	HQ588235	None			I13V, E35D, M36I, R41K, H69R, L89M, I93L	CRF01_AE
	GXNN6093	GXNN6093	HQ588236	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GXBY5817	GXBY5817	HQ588239	None			I13V, E35D, M36I, R41K, H69R, I72V, L89M, I93L	CRF01_AE
	GXHX1605	GXHX1605	HQ588245	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GXHX6917	GXHX6917	HQ588254	None			I13V, G16E, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	GXNN1819	GXNN1819	HQ588260	None			I13V, G16E, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	GXBY2058	GXBY2058	HQ588261	None			M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GXHX2023	GXHX2023	HQ588271	None			E35D, M36I, N37D, R41K, H69R, L89M, I93L	CRF01_AE
	GXBY7291	GXBY7291	HQ588272	None			K20R, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	GXNN7478	GXNN7478	HQ588273	None			G16E, E35D, M36I, R41K, L63T, H69K, K70R, I72T, L89M, I93L	CRF01_AE
	GXNN0143	GXNN0143	HQ588301	None			T12P, G16E, E35D, M36I, R41K, L63S, H69K, L89M, I93L	CRF01_AE
	GXNN7232	GXNN7232	HQ588303	None			M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
Telan (2011)	09MM_09-8567	09MM_09-8567	AB587097	None			K20R, M36I, R41K, K45R, H69K, L89M, I93L	CRF01_AE
	09MM_09-1840	09MM_09-1840	AB587100	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	08R_01-359	08R_01-359	AB587102	None			K20R, M36I, R41K, H69K, I72M, L89M, I93L	CRF01_AE
Ye (2011)	BJ07330	BJ07330	JF906610	None			G16E, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	BJ07371	BJ07371	JF906624	None			I13V, L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	BJ07402	BJ07402	JF906636	None			L19M, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	BJ07418	BJ07418	JF906640	None			E35D, M36I, R41K, H69K, K70KR, A71AT, L89M, I93L	CRF01_AE
	BJ07443	BJ07443	JF906646	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	BJ07528	BJ07528	JF906661	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	BJ07542	BJ07542	JF906664	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	BJ07562	BJ07562	JF906675	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	BJ07618	BJ07618	JF906686	None			K14R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Zeng (2011)	K1	K1	JF505552	None			L19M, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	K43	K43	JF505553	None			L19M, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	K4	K4	JF505560	None			I13V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	K27	K27	JF505563	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	K55	K55	JF505565	None			I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	G1	G1	JF505568	None			I13V, E35D, M36I, R41K, H69K, T74S, L89M, I93L	CRF01_AE
	G3	G3	JF505570	None			I15V, E35D, M36I, R41K, K45R, H69K, L89M, I93L	CRF01_AE
An (2012)	09LNA008	09LNA008	JX960604	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	09LNA011	09LNA011	JX960605	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	08LNA003	08LNA003	JX960606	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	09LNA340	09LNA340	JX960607	None			K20R, E35D, M36I, R41K, L63I, H69K, K70Q, I72M, L89M, I93L	CRF01_AE
	10LNA571	10LNA571	JX960611	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	08LNA004	08LNA004	JX960617	None			T12S, L19I, E35D, M36I, R41K, L63M, H69K, V82I, L89M, I93L	CRF01_AE
	09LNA041	09LNA041	JX960618	None			L19I, E35D, M36I, R41K, L63T, H69K, V82I, L89M, I93L	CRF01_AE
	10LNA294	10LNA294	JX960619	None			T12S, L19I, K20R, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L	CRF01_AE
	10LNA918	10LNA918	JX960620	None			T12S, L19I, K20R, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L	CRF01_AE
	09LNA425	09LNA425	JX960621	None			T12S, L19I, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L	CRF01_AE
	10LNA264	10LNA264	JX960622	None			L19I, E35D, M36I, R41K, L63V, H69K, V82I, L89M, I93L	CRF01_AE
	09LNA527	09LNA527	JX960625	None			I13V, L19M, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M, I93L	CRF01_AE
	10LNA105	10LNA105	JX960626	None			I13V, G16E, L19M, K20R, E35D, M36I, R41K, K45R, I62V, L63T, H69K, V82I, L89M, I93L	CRF01_AE
	10LNA057	10LNA057	JX960633	None			T12A, I15V, L19I, E35D, M36I, R41K, L63P, I64M, H69K, K70R, L89M, I93L	CRF01_AE
Chen (2012)	YN09DH0046	YN09DH0046	JQ658516	None			L10V, I13V, I15IM, E35D, M36I, N37D, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	YN09DH0105	YN09DH0105	JQ658568	None			G16E, E35D, M36I, R41K, L63P, H69K, I93L	CRF01_AE
	YN09DH0106	YN09DH0106	JQ658569	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	YN09DH0123	YN09DH0123	JQ658583	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	YN09DH0141	YN09DH0141	JQ658598	None			K20KR, E35D, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	YN09DH0144	YN09DH0144	JQ658601	None			T12TA, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	YN09DH0157	YN09DH0157	JQ658614	None			I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	YN10DH0020	YN10DH0020	JQ658646	None			I13V, M36V, R41K, L63P, H69K, A71V, I72IV, I93L	CRF01_AE
	YN10DH0023	YN10DH0023	JQ658648	None			G16E, M36I, R41K, D60E, H69K, I72IV, L89M, I93L	CRF01_AE
	YN10DH0024	YN10DH0024	JQ658649	None		L33F	I13V, M36I, P39Q, R41K, R57RK, L63P, H69K, L89M, I93L	CRF01_AE
	YN10DH0042	YN10DH0042	JQ658666	None			I15IV, E35D, M36I, R41K, L63LP, H69K, V82VI, L89M, I93L	CRF01_AE
	YN10DH0057	YN10DH0057	JQ658680	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	YN10DH0060	YN10DH0060	JQ658683	None			T12TA, D29DG, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	YN10DH0063	YN10DH0063	JQ658686	None			G16E, E35D, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	YN10DH0065	YN10DH0065	JQ658687	None			E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	YN10DH0072	YN10DH0072	JQ658693	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	YN10DH0073	YN10DH0073	JQ658694	None			I15IV, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	YN10DH0088	YN10DH0088	JQ658709	None			G16E, E35D, M36I, R41K, L63P, H69K, K70R, I93L	CRF01_AE
	YN10DH0100	YN10DH0100	JQ658721	None			G16E, L19M, E35D, M36I, R41K, L63T, H69K, L89M, I93L	CRF01_AE
	YN10DH0119	YN10DH0119	JQ658739	None			G16E, E35N, M36I, R41K, G49E, G51E, V56I, E65K, H69K, L89M, I93L	CRF01_AE
	YN10DH0122	YN10DH0122	JQ658742	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	YN10DH0126	YN10DH0126	JQ658746	None		L89MV	T12A, E35D, M36I, R41K, L63P, H69K, I93L	CRF01_AE
	YN10DH0127	YN10DH0127	JQ658747	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	YN10DH0140	YN10DH0140	JQ658759	None			T12A, G16E, E35D, M36V, R41K, K45R, H69K, I72V, L89M, I93L	CRF01_AE
De Gascun (2012)	IRL12973	IRL12973	JN622225	None			V11VF, E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	IRL27862	IRL27862	JN622229	None			I13V, K20R, M36I, N37S, R41RK, H69K, L89M, I93L	CRF01_AE
Hassan (2012)	RS09000868	RS09000868	HQ441613	None			L10V, I13V, G16E, E35ED, M36I, R41K, L63V, H69K, L89M, T91V, I93L	CRF01_AE
Karlsson (2012)	SE_101	SE_101	JQ698736	None			G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	SE_161	SE_161	JQ698779	None			W6G, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	SE_294	SE_294	JQ698868	None			L5LF, G16A, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Kijak (2012)	05TH130087	05TH130087	JN248339	None			L10V, T12I, I13V, G16E, E35D, M36I, R41K, L63N, H69K, L89M, I93L	CRF01_AE
	05TH342968	05TH342968	JN248342	None			T12A, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	04TH328531	04TH328531	JN248324	None			G16E, K20R, E35D, M36I, R41K, L63S, H69K, L89M, I93L	CRF01_AE
	04TH807015	04TH807015	JN248334	None			K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	04TH427990	04TH427990	JN248327	None			I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	04TH321566	04TH321566	JN248322	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	04TH704320	04TH704320	JN248331	None			E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	05TH327568	05TH327568	JN248341	None			G16A, Q18H, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Rolland (2012)	AA014a02L	AA014a02L	JX446859	None			I13V, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	AA019a_WG2	AA019a_WG2	JX446920	None			K20R, E35D, M36I, R41K, L63P, H69K, I72V, L89M, I93L	CRF01_AE
	AA027a_wg2a	AA027a_wg2a	JX447026	None			K14R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	AA041a01L	AA041a01L	JX447167	None			I13V, M36I, R41K, L63C, H69K, T74A, L89M, I93L	CRF01_AE
	AA050a_WG2	AA050a_WG2	JX447285	None			I13V, G16A, E35D, M36I, R41K, D60E, Q61E, H69K, L89M, I93L	CRF01_AE
	AA054a04	AA054a04	JX447307	None			K20R, E35D, M36I, N37D, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	AA059a_WG3	AA059a_WG3	JX447355	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	AA070a_LH07	AA070a_LH07	JX447491	None			T12V, G16E, E35D, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	AA095a_WG22	AA095a_WG22	JX447831	None			I15V, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	AA096a_WG8	AA096a_WG8	JX447842	None			I15V, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	AA098a02L	AA098a02L	JX447867	None			L10V, I15V, G16E, K20R, E35D, M36I, R41K, G68E, H69K, L89M, I93L	CRF01_AE
	AA102a_LH7	AA102a_LH7	JX447940	None			G16A, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AA103a07L	AA103a07L	JX447952	None			I13M, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	AA104a_LH21	AA104a_LH21	JX447973	None		L33F	I3L, L10I, I13V, M36I, R41K, H69K, K70R, L89M, I93L, G94D	CRF01_AE
	AA112a05L	AA112a05L	JX448068	None			I13V, K14R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	AA119a_02L	AA119a_02L	JX448174	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	AA126a08L	AA126a08L	JX448268	None			I15V, G16E, E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	AA131a01L	AA131a01L	JX448311	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Sigaloff (2012)	KEKSN423	KEKSN423	JN628481	None			T12S, I15V, L19I, E35D, M36I, R41K, R57K, L63P, C67E, H69K, L89M, I93L	CRF01_AE
Telan (2012)	801359	801359	AB747377	None			K20R, M36I, R41K, H69K, I72M, L89M, I93L	CRF01_AE
	9098567	9098567	AB747381	None			K20R, M36I, R41K, K45R, H69K, L89M, I93L	CRF01_AE
	11023131	11023131	AB747439	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	110318367	110318367	AB747444	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	110318565	110318565	AB747445	None			K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	110318824	110318824	AB747447	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11084876	11084876	AB747448	None			K20R, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	10031110	10031110	AB747449	None			I13V, I15V, L19M, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	11031525	11031525	AB747452	None			K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	11052748	11052748	AB747453	None			K20R, M36I, N37D, L63P, H69K, L89M, I93L	CRF01_AE
	11052838	11052838	AB747454	None			T12I, I13V, G16E, K20R, M36I, R41K, L63V, H69K, L89M, I93L	CRF01_AE
	11052918	11052918	AB747455	None			K20R, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	11063580	11063580	AB747456	None			K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	11063626	11063626	AB747457	None			I13V, I15V, L19M, K20R, M36I, H69K, L89M, I93L	CRF01_AE
	11063809	11063809	AB747459	None			I13V, I15V, L19M, K20R, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	11084622	11084622	AB747460	None			K20R, M36I, R41K, H69K, K70R, V77I, L89M, I93L	CRF01_AE
	11084717	11084717	AB747461	None			I13V, K14R, K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	11084721	11084721	AB747462	None			K20R, M36I, R41K, H69K, I93L	CRF01_AE
	11117952	11117952	AB747464	None		L10F	K20R, E35D, M36I, R41K, Q61D, L63S, C67S, H69K, I72T, L89M, I93L	CRF01_AE
	1101275	1101275	AB747467	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11042829	11042829	AB747470	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11042838	11042838	AB747471	None			T12I, I13V, G16E, K20R, M36I, R41K, L63V, H69K, L89M, I93L	CRF01_AE
	11042857	11042857	AB747472	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11053016	11053016	AB747474	None			I13V, K20R, M36I, R41K, I64L, H69K, L89M, I93L	CRF01_AE
	11063364	11063364	AB747477	None			K20R, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	11063901	11063901	AB747479	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11063966	11063966	AB747481	None			I13V, I15V, K20R, M36I, P39S, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	11084994	11084994	AB747488	None			K14R, G16E, K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	11095719	11095719	AB747491	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11096245	11096245	AB747493	None			K20R, M36I, P39S, R41K, K45R, L63S, H69K, L89M, I93L	CRF01_AE
	11106566	11106566	AB747495	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11107161	11107161	AB747496	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11117092	11117092	AB747497	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11117327	11117327	AB747498	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	11117852	11117852	AB747500	None			K20R, M36I, R41K, L63P, H69K, L89I, I93L	CRF01_AE
	11118565	11118565	AB747501	None			K20R, M36I, R41K, H69K, I72V, L89M, I93L	CRF01_AE
	12031759	12031759	AB747505	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12031765	12031765	AB747507	None			K20R, M36I, R41K, K45R, H69K, L89M, I93L	CRF01_AE
	12031880	12031880	AB747509	None			K20R, M36I, R41K, H69K, K70R, I72V, L89M, I93L	CRF01_AE
	12031810	12031810	AB747510	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12031859	12031859	AB747511	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12031860	12031860	AB747512	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12031877	12031877	AB747513	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12031879	12031879	AB747514	None			K20R, M36I, H69K, L89M, I93L	CRF01_AE
	12031900	12031900	AB747517	None			K20R, M36I, R41K, H69K, I93L	CRF01_AE
	12031911	12031911	AB747518	None			K20R, M36I, R41K, L63I, H69K, L89M, I93L	CRF01_AE
	12031934	12031934	AB747521	None			K20R, M36I, N37D, K45R, H69K, L89M, I93L	CRF01_AE
	12031998	12031998	AB747535	None			K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	12032026	12032026	AB747537	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12032037	12032037	AB747539	None			K20R, M36I, R41K, K45R, H69K, L89M, I93L	CRF01_AE
	12032076	12032076	AB747540	None			G16E, K20R, M36I, R41K, L63I, H69K, K70R, L89M, I93L	CRF01_AE
	12032090	12032090	AB747541	None			K20R, E35D, M36I, H69K, L89M, I93L	CRF01_AE
	12032095	12032095	AB747542	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12032291	12032291	AB747544	None			G16E, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12032299	12032299	AB747545	None			K20R, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	12032103	12032103	AB747546	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12032110	12032110	AB747547	None			K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	12032290	12032290	AB747548	None			G16E, K20R, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	12037182	12037182	AB747549	None			G16A, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Tran (2012)	HPA073	HPA073	AB690883	None			I15IV, E35D, M36I, R41K, K45KR, L63LP, H69K, L89M, I93L	CRF01_AE
	HPA107	HPA107	AB690887	None			K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	HPA149	HPA149	AB690890	None			I13V, G16E, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPA154	HPA154	AB690892	None			I13IV, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPA188	HPA188	AB690900	None			I13V, E35D, M36I, R41K, H69K, A71V, L89M, I93L	CRF01_AE
	HPA193	HPA193	AB690903	None			I13V, E34D, M36D, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	HPA219	HPA219	AB690911	None			G16AE, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPA222	HPA222	AB690912	None			I15V, G16A, M36I, R41K, L63LP, H69K, L89IM, I93L	CRF01_AE
	HPA239	HPA239	AB690914	None			I15V, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPA246	HPA246	AB690916	None			I15V, E35D, M36I, N37D, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	HPA259	HPA259	AB690918	None			K20R, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	HPA261	HPA261	AB690919	None			I15IV, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPA267	HPA267	AB690922	None			E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	HPA294	HPA294	AB690925	None			K14KR, L19LM, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPC043	HPC043	AB690952	None			G16A, K20R, E35D, M36I, N37D, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	HPC053	HPC053	AB690957	None			M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPC056	HPC056	AB690959	None			I13IV, G16A, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPV2_124	HPV2_124	AB690969	None			T12P, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	HPV2_184	HPV2_184	AB690973	None			I15V, G16A, K20R, E35D, M36I, N37D, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	HPV2_213	HPV2_213	AB690980	None			I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Trinh (2012)	VN-31	VN-31	GQ161849	None			G16E, E35D, M36I, N37S, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	VN-32	VN-32	GQ161850	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	VN-76	VN-76	GQ161861	None			I13V, G16A, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	VN-93	VN-93	GQ161872	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	VN-94	VN-94	GQ161873	None			L10I, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	VN-103	VN-103	GQ161877	None			I13V, E35D_IN, M36L, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	VN-105	VN-105	GQ161879	None			I13V, G16E, K20R, E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	VN-111	VN-111	GQ161884	None			G16E, K20R, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	VN-113	VN-113	GQ161885	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	VN-115	VN-115	GQ161887	None			E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	VN-33	VN-33	HQ876685	None			G16E, E35D, M36I, R41K, D60E, H69K, K70R, L89M, I93L	CRF01_AE
	VN-42	VN-42	HQ876689	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	VN-6	VN-6	HQ876669	None			E35D, M36I, R41K, K43R, L63P, H69K, L89M, I93L	CRF01_AE
	VN-15	VN-15	HQ876674	None			L10I, I13V, G16A, E35D, M36I, N37D, R41K, L63C, H69K, A71T, L89M, I93L	CRF01_AE
	VN-20	VN-20	HQ876677	None			L10I, G16E, K20R, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	VN-24	VN-24	HQ876680	None			G16A, E35D, M36I, N37D, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	VN-25	VN-25	HQ876681	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	VN-28	VN-28	HQ876684	None			I13V, K20R, E35D, M36I, N37D, R41K, R57K, L63C, H69K, L89M, I93L	CRF01_AE
	VN-41	VN-41	HQ876688	None			G16A, E35D, M36I, N37D, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	VN-44	VN-44	HQ876690	None			E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
Yang (2012)	3712	3712	JQ617188	None			G16AE, E35D, M36I, H69K, L89M, I93L	CRF01_AE
	3713	3713	JQ617189	None			I13V, G16V, K20I, E35ED, M36I, N37D, R41K, K45KR, L63PS, H69K, K70R, L89M, I93L	CRF01_AE
	3718	3718	JQ617194	None			W6WL, G16E, L24LF, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	3727	3727	JQ617203	None			K14R, G16A, E35D, M36I, N37D, R41K, H69K, L89M, I93L	CRF01_AE
	3739	3739	JQ617215	None			G16E, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	3750	3750	JQ617226	None			W6WL, G16E, E35D, M36I, R41K, K45KR, L63C, H69K, L89M, I93L	CRF01_AE
	3751	3751	JQ617227	None			G16A, E35D, M36I, R41K, L63C, H69K, L89M, I93L	CRF01_AE
	3754	3754	JQ617230	None			I15IV, G16A, K20R, E35ED, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	3761	3761	JQ617237	None			W6WL, M36I, R41K, L63A, H69K, I93L	CRF01_AE
	3768	3768	JQ617244	None			G16E, E35D, M36I, N37S, R41K, R57RK, L63C, H69K, L89M, I93L	CRF01_AE
	3773	3773	JQ617249	None			L10I, I13IV, G16E, K20KR, E35D, M36I, R41K, L63C, H69Q, L89M, I93L	CRF01_AE
	3775	3775	JQ617251	None			I13IV, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	3777	3777	JQ617253	None			I15IV, G16E, K20R, E35ED, M36I, R41K, K55R, D60DE, L63C, H69K, L89M, I93L	CRF01_AE
Yang (2012)	GZ141	GZ141	JN848837	None			G16GE, E35D, M36I, R41K, L63P, H69K, L89M, I93L, N98NIS	CRF01_AE
	GZ186	GZ186	JN848840	None			E35D, M36I, R41K, L63LI, H69K, L89M, I93L	CRF01_AE
	GZ193	GZ193	JN848842	None			G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ010	GZ010	JN848846	None			M36I, R41K, L63P, H69K, V82VI, L89LM, I93L	CRF01_AE
	GZ072	GZ072	JN848855	None		V11I	I13V, G16E, K20R, M36I, R41K, H69K, I72V, L89M, I93L	CRF01_AE
	GZ091	GZ091	JN848859	None			I13V, G16E, L19I, E35D, M36I, R41K, H69K, I72IV, L89M, I93L	CRF01_AE
	GZ236	GZ236	JN848865	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ109	GZ109	JN848866	None			E35D, M36I, R41K, R57K, L63T, H69R, L89M, I93L	CRF01_AE
	GZ111	GZ111	JN848868	None			E35D, M36I, R41K, L63P, H69K, G78GE, L89M, I93L	CRF01_AE
	GZ112	GZ112	JN848869	None			E35D, M36I, R41K, K43KE, L63P, H69K, L89M, I93L	CRF01_AE
	GZ115	GZ115	JN848871	None			L19I, K20R, E35D, M36I, R41K, L63P, H69K, I72V, L89M, I93L	CRF01_AE
	GZ125	GZ125	JN848872	None			I13V, I15V, M36I, R41K, I62V, L63P, G68E, H69R, L89M, I93L	CRF01_AE
	GZ158	GZ158	JN848878	None			I13V, E35ED, M36I, R41K, L63C, H69K, T74S, L89M, I93L	CRF01_AE
	GZ167	GZ167	JN848882	None			K20R, E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	GZ189	GZ189	JN848883	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ200	GZ200	JN848885	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ204	GZ204	JN848886	None			I13V, I15V, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	GZ214	GZ214	JN848888	None			L19I, K20R, E35D, M36I, R41K, L63P, H69K, I72V, L89M, I93L	CRF01_AE
	GZ108	GZ108	JN848893	None			E35D, M36I, R41K, R57K, L63T, H69R, L89M, I93L	CRF01_AE
	GZ114	GZ114	JN848894	None			L19I, K20R, E35D, M36I, R41K, L63P, H69K, I72V, L89M, I93L	CRF01_AE
	GZ120	GZ120	JN848896	None			L19I, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ165	GZ165	JN848900	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ198	GZ198	JN848902	None			G16E, E35N, M36I, R41K, I62V, H69K, L89M, I93L	CRF01_AE
	GZ206	GZ206	JN848903	None			G16E, K20R, E35D, M36I, R41K, R57K, H69K, K70KR, L89M, I93L, N98NS	CRF01_AE
	GZ208	GZ208	JN848904	None			E35D, M36I, R41K, H69K, K70KR, V82I, L89M, I93L	CRF01_AE
	GZ215	GZ215	JN848905	None			G16E, L19I, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ221	GZ221	JN848907	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	GZ224	GZ224	JN848908	None			K20R, E35D, M36I, R41K, L63LP, H69K, L89M, I93L	CRF01_AE
	GZ245	GZ245	JN848913	None			L10I, L19I, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	GZ246	GZ246	JN848914	None			I13V, G16E, K20KR, E35D, M36I, R41K, H69K, V82I, L89M, I93L	CRF01_AE
	GZ248	GZ248	JN848915	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Chen (2013)	11YNHH091	11YNHH091	JX412354	None			E35D, M36I, R41K, D60E, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	11YNHH028	11YNHH028	JX412337	None			G16A, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	11YNHH110	11YNHH110	JX412359	None			M36I, R41K, L63T, H69K, L89M, I93L	CRF01_AE
Frentz (2013)	EHR-02775	EHR-02775	JX299593	None			I13V, K14R, G16E, E35D, M36I, R41K, R57RK, Q61QH, I64IL, H69K, L89M, I93L	CRF01_AE
	EHR-04649	EHR-04649	JX299622	None			I13V, K14R, E35D, M36I, R41K, K45R, L63P, H69K, V77I, L89M, I93L	CRF01_AE
	EHR-19229	EHR-19229	JX299858	None			L10I, I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-21285	EHR-21285	JX299892	None			I13V, K14R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-25802	EHR-25802	JX299989	None			I13V, K14R, I15V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-28288	EHR-28288	JX300032	None			I13V, K14R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-35542	EHR-35542	JX300137	None			I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-35841	EHR-35841	JX300141	None			I13V, K14R, G16GE, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-36300	EHR-36300	JX300149	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-48895	EHR-48895	JX300351	None			I13IV, E35D, M36I, R41K, R57K, I62V, L63HPSY, H69K, A71V, T74TS, L89M, I93L	CRF01_AE
	EHR-501156	EHR-501156	JX300371	None			I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89I, I93L	CRF01_AE
	EHR-50653	EHR-50653	JX300384	None			K14KR, E35D, M36I, R41K, R57K, H69K, L89M, I93L	CRF01_AE
	EHR-55961	EHR-55961	JX300468	None			E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-56936	EHR-56936	JX300489	None			I13V, K14R, E35D, M36I, R41K, I64M, H69K, L89M, I93L	CRF01_AE
	EHR-57221	EHR-57221	JX300496	None			K14R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-62720	EHR-62720	JX300589	None			T12TAS, I13V, K14KR, L19LV, E35D, M36I, R41K, L63P, H69K, I72IV, V77I, L89M, I93L	CRF01_AE
	EHR-66128	EHR-66128	JX300653	None			E35D, M36I, R41K, D60E, H69K, L89M, I93L	CRF01_AE
	EHR-76812	EHR-76812	JX300856	None			L19I, K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-84539	EHR-84539	JX300972	None			I13V, K14R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-87644	EHR-87644	JX301034	None			I13V, K14KR, G16E, E35D, M36I, R41K, L63LIPT, H69K, L89M, I93L	CRF01_AE
	EHR-91619	EHR-91619	JX301073	None			I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	EHR-92950	EHR-92950	JX301087	None			I13V, K14R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
Hawke (2013)	14220742	14220742	KC237937	None			I13V, M36I, R41K, R57RK, H69K, T74TA, L89M, I93L	CRF01_AE
	16001679	16001679	KC237962	None			K14R, L19Q, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	18468564	18468564	KC237999	None			L10LV, K14KR, I15IV, Q18E, L19LM, K20R, E35D, M36I, R41K, L63T, H69K, I72IT, L89M, I93L	CRF01_AE
	20158678	20158678	KC238032	None			I13V, I15V, M36I, R41K, Q61E, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	5495700 H	5495700 H	KC238176	None			I13V, K20R, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	6141821 H	6141821 H	KC238201	None			I13V, E35D, M36I, R41K, I64IM, H69K, L89M, I93L	CRF01_AE
	9275799 H	9275799 H	KC238277	None			K14KR, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
Li (2013)	2801	2801	JQ901022	None			T12P, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	2810	2810	JQ901028	None			T12P, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	2815	2815	JQ901032	None			I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	2825	2825	JQ901039	None			I13V, E35D, M36I, R41K, H69K, L89M, I93L, F99FL	CRF01_AE
	2830	2830	JQ901044	None			K20R, E35D, M36I, R41K, H69K, K70R, L89M, I93L	CRF01_AE
	2849	2849	JQ901058	None			T12P, L19LI, K20R, E35D, M36I, R41K, L63P, H69K, K70R, V77I, L89M, I93L	CRF01_AE
	2850	2850	JQ901059	None		V11I	T12A, L19V, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	2857	2857	JQ901066	None			L19M, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	2858	2858	JQ901067	None			G16E, L19I, E35D, M36I, R41K, L63T, H69K, L89M, I93L	CRF01_AE
	2868	2868	JQ901074	None			L19M, E35D, M36I, R41K, L63P, H69K, L89M, I93L	CRF01_AE
	2879	2879	JQ901085	None			T12P, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L	CRF01_AE
	2880	2880	JQ901086	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	2886	2886	JQ901089	None			K20R, E35D, M36I, R41K, H69K, L89M, I93L	CRF01_AE
	2895	2895	JQ901096	None			I13V, L19M, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L	CRF01_AE

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