| Author (yr) |
Patient |
Isolate |
Acc# |
PIs |
Wks | PIMajorDRMs |
PIMinorDRMs |
OtherMut | Subtype |
| Winslow (1995) | H9156Thai | H9156Thai | U12742 | None | | | | T4X, I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Lan (2003) | NTHvr75 | NTHvr75 | AY238315 | None | | | | I13IV, E35D, M36I, R41K, L63LP, H69K, V77I, V82I, L89M, I93L | CRF01_AE |
| Snoeck (2004) | BE50 | BE50 | AY900751 | None | | | | T12A, I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Tovanabutra (2004) | 02THOUR737I | 02_737I | AY358037 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | 01THOUR033I | 01_033I | AY358071 | None | | | | E35D, M36I, R57K, H69K, V82I, I93L | CRF01_AE |
| Hsu (2005) | LYH_AY870200 | BAA161384 | AY870200 | None | | | | I15V, E35D, M36I, R41K, R57RK, H69K, K70KR, V82I, L89M | CRF01_AE |
| | LYH_AY870207 | BAA161393 | AY870207 | None | | | | I13IV, E35D, M36I, R57K, H69K, V82I, L89M | CRF01_AE |
| | BAA150606 | BAA150606 | AY870151 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | BAA150613 | BAA150613 | AY870154 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, V82I, L89I | CRF01_AE |
| | BAA154763 | BAA154763 | AY870164 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | BAA157680 | BAA157680 | AY870185 | None | | | | I13V, E35D, M36I, R41K, K43KR, H69K, V82I, L89M | CRF01_AE |
| | BAA161414 | BAA161414 | AY870224 | None | | | | I13V, I15V, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| | BAA161447 | BAA161447 | AY870240 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Ly (2005) | NL_KHM_CD20 | KHM_CD20 | DQ013650 | None | | | | I13V, K20I, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| | NL_KHM_SOS15 | KHM_SOS15 | DQ013624 | None | | | | I13V, K20R, M36I, N37D, R41K, H69K, V82I, L89M | CRF01_AE |
| | NL_KHM_SOS7 | KHM_SOS7 | DQ013616 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| Non-B Workgroup (2005) | TH_189 | TH_189 | AY605594 | None | | | | I13V, I15V, E35D, M36I, R41K, L63S, H69K, V82I, L89M | CRF01_AE |
| | TH_219 | TH_219 | AY605622 | None | | | | L10I, I13V, E35D, M36I, R41K, L63I, H69K, V82I, L89M | CRF01_AE |
| Tee (2005) | 03MYKL1420 | 03_1420 | AY904540 | None | | | | I13V, K20R, M36I, R41K, L63V, H69K, V82I, L89M | CRF01_AE |
| | 04MYKL1658 | 04_1658 | AY904594 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| | 03MYKLTW9787 | 03TW9787 | AY904574 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | 03MYKL1555 | 03_1555 | AY904560 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | 03MYKL1349 | 03_1349 | AY904530 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Tovanabutra (2005) | 00US_MSC1164 | 00US_1164 | AY444804 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Jayaraman (2006) | 1-00-0098 | 1-00-0098 | | None | | | | I13V, I15L, L19Q, K20I, E21T, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Tee (2006) | MYKL1570 | 03MYKL1570 | AY960944 | None | | | | I13V, M36I, N37D, R41K, H69K, V82I, L89M | CRF01_AE |
| Watanaveeradej (2006) | 99TH_C1080 | 99_C1080 | AY945712 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | 99TH_R3006 | 99_R3006 | AY945731 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Brumme (2007) | 1519 | PRRT_1519 | EF368829 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | 1776 | PRRT_1776 | EF369086 | None | | | | I13V, M36I, R41K, L63P, H69K, V82I, L89M | CRF01_AE |
| Gatanaga (2007) | C04-5555-6298-1 | C04-5555-6298-1 | AB640449 | None | | | | I13V, K20KIM, E35D, M36I, R41K, R57RK, H69K, V82I, L89M | CRF01_AE |
| | C04-2066206-1 | C04-2066206-1 | AB640482 | None | | | | I13V, E34K, M36I, R41K, L63S, H69K, V82I, L89M | CRF01_AE |
| Han (2007) | LN27 | 02CNLN27 | EF122518 | None | | | | I13V, M36I, N37D, H69K, K70R, V82I, L89M | CRF01_AE |
| | LN76 | 04CNLN76 | EF122541 | None | | | | L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | LN77 | 04CNLN77 | EF122542 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| Liu (2007) | fj01 | fj01 | EF432660 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| | fj53 | fj53 | EF432686 | None | | | | L10I, I13V, E35D, M36I, R41K, K43R, L63P, H69K, V82I, L89M, I93V | CRF01_AE |
| | fj59 | fj59 | EF432689 | None | | | | E35D, M36I, R57K, H69K, V82I, L89M, I93L | CRF01_AE |
| | fj78 | fj78 | EF432702 | None | | | | I13V, K14R, K20I, E21K, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Zhong (2007) | D0038 | 05CN_038 | EF199575 | None | | | | T12P, I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | D0061 | 05CN_061 | EF199592 | None | | | | K20R, E35D, M36I, R41K, L63S, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| | D0084 | 05CN_084 | EF199612 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| | D0088 | 05CN_088 | EF199616 | None | | | | K20R, E35D, M36I, R41K, L63S, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| Chang (2008) | TW4794 | TW4794 | DQ640281 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | TW10063a | TW10063a | | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Ibe (2008) | 159 | 159 | AB356207 | None | | | | I13V, K20I, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Nguyen (2008) | 033 | VN033 | | None | | | | I13V, K20R, M36I, R41K, G68X, H69K, A71G, V82I, L89M, I93L, F99X | CRF01_AE |
| | 040 | VN040 | | None | | | | I15IV, G16E, E35D, M36I, R41K, L63S, H69K, V82I, L89M, F99X | CRF01_AE |
| Sirivichayakul (2008) | NBC-45 | NBC-45Pr | JQ364343 | None | | | | E35D, M36I, R41K, L63T, H69K, V82I, L89M, I93L | CRF01_AE |
| Auwanit (2009) | 21 | AE-PR21 | | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | 61 | AE-PR61 | | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M, L97I | CRF01_AE |
| | 42 | AE-PR42 | FJ463518 | None | | | | K14R, I15IV, L19LQ, E35D, M36I, R41K, I62V, L63ST, H69K, K70R, V82I, L89I | CRF01_AE |
| | 161 | AE-PR161 | FJ463548 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| Ayouba (2009) | FD0366 | FD0366PI | GQ352061 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | FD0440 | FD0440PI | GQ352065 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M, T91V | CRF01_AE |
| | R32 | R32_PR | GQ352133 | None | | | | I13V, I15V, K20I, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| | R33 | R33_PR | GQ352134 | None | | | | I13V, I15V, E35D, M36I, R41RK, I66IF, H69K, K70KE, V82I, I85IV, L89M, I93L | CRF01_AE |
| | R37 | R37_PR | GQ352138 | None | | | | I15V, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| | R78 | R78_PR | GQ352170 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, V82I, L89M | CRF01_AE |
| Fujisaki (2009) | 665 | 665 | AB442323 | None | | | L33F | L10I, I13V, M36I, R41K, K55KR, H69K, K70KR, V82I, L89M, I93V | CRF01_AE |
| Ishizaki (2009) | C89 | C89ag | FJ006983 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, V82I, L89M, I93V | CRF01_AE |
| | A2_236 | A2_236aa | FJ007045 | None | | | | I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | A35 | A35ga | FJ007121 | None | | | | I13V, E35D, M36I, N37D, R41K, K43R, H69K, V82I, L89M | CRF01_AE |
| | A64 | A64a | FJ007134 | None | | | | I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | A203 | A203 | FJ007211 | None | | | | L19M, E35D, M36I, R41K, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| | A494 | A494a | FJ007343 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | A445 | A445c | FJ007357 | None | | | | E35D, M36I, R41K, L63P, H69K, V82I, L89M, T91I | CRF01_AE |
| Lee (2009) | S07024 | S07024 | EU715181 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| | S07017 | S07017 | EU715191 | None | | | | I13V, K20I, E35D, M36I, R41K, C67CW, H69K, K70R, V82I, L89M | CRF01_AE |
| Nouhin (2009) | KC06 | KC06PROT | FJ531944 | None | | | | L5LF, I13V, L19LV, K20I, T26TS, E35D, M36I, R41K, E65EK, H69K, V82I, L89M | CRF01_AE |
| | KC13 | KC13PROT | FJ531950 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| | KC14 | KC14PROT | FJ531951 | None | | | | L5LF, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| | KC27 | KC27PROT | FJ531964 | None | | | | I15V, E35D, M36I, R41K, G51GA, H69K, V82I, L89M, I93L | CRF01_AE |
| | KC29 | KC29PROT | FJ531966 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| | KC51 | KC51PROT | FJ531985 | None | | | | L5LF, I13V, E35EK, M36I, R41K, R57K, H69K, K70R, V75VG, V82I, L89M | CRF01_AE |
| | KC55 | KC55PROT | FJ531988 | None | | | | L5LF, I15Y, E35N, M36I, R41K, L63C, H69K, V82I, L89M, I93L | CRF01_AE |
| | KC57 | KC57PROT | FJ531990 | None | | | | I13V, K20I, M36I, R41K, H69K, K70R, I72IV, V82I, L89M | CRF01_AE |
| Vercauteren (2009) | pt1960 | 1520485721 | GQ399064 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | pt1586 | 3841341890 | GQ399438 | None | | | | I13V, I15V, M36I, R41K, L63V, H69K, V82I, L89M | CRF01_AE |
| | pt1339 | 5208160299 | GQ399685 | None | | | | I13V, K14R, I15V, M36I, R41K, D60E, L63P, C67Y, H69K, V82I, L89M, I93L | CRF01_AE |
| | pt1297 | 5430375436 | GQ399727 | None | | | | L10I, I13V, K14R, E35D, M36I, R41K, H69K, V82I, L89M, L97I | CRF01_AE |
| | pt997 | 7235844899 | GQ400027 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | pt323 | JULc9Y2qzk | GQ400701 | None | | | | E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | pt285 | lPONbZRtMk | GQ400739 | None | | | | E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | pt133 | sUWqTcMx34 | GQ400891 | None | | | | E35D, M36I, R41K, R57K, H69K, V82I, L89I | CRF01_AE |
| Han (2010) | LN109 | LN109 | FJ531411 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | LN132 | LN132 | FJ531425 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, V82I, L89M, I93L | CRF01_AE |
| | LN176 | LN176 | FJ531432 | None | | | | L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | LN187 | LN187 | FJ531436 | None | | | | I13V, L19M, E35X, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | SY023 | SY023 | FJ531442 | None | | | | I13V, L19M, K20R, E35D, M36I, R41K, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| | SY041 | SY041 | FJ531443 | None | | | | L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | LN104 | LN104 | FJ531449 | None | | | | L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | LN152 | LN152 | FJ531454 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| | LN157 | LN157 | FJ531455 | None | | | | I13V, L19M, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Jullaksorn (2010) | CR05 | CR05-Apr08R | GQ857287 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| | | CR05-Jul08R | GQ857319 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| | | CR05-Oct08R | GQ857349 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| | | CR05-Jan09R | GQ857383 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| | | CR05-Apr09R | GQ857415 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M, L97I | CRF01_AE |
| | CR17 | CR17-Oct08D | GQ857359 | None | | | | I13V, M36I, R41K, K43R, L63P, H69K, K70R, I72V, V82I, L89I | CRF01_AE |
| | | CR17-Jan09D | GQ857392 | None | | | | I13V, M36I, R41K, K43R, H69K, K70R, V82I, L89I | CRF01_AE |
| | | CR17-Apr09D | GQ857423 | None | | | | Q7H, I13V, M36I, R41K, K43R, H69K, K70R, V82I, L89I | CRF01_AE |
| Phan (2010) | ND23 | ND23 | AB519459 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, Q61E, H69K, K70R, V82I, L89M | CRF01_AE |
| | ND29 | ND29 | AB519462 | None | | | | L10I, I13V, E35D, M36I, N37D, R41K, H69K, V82I, L89M | CRF01_AE |
| | ND30 | ND30 | AB519463 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | O901 | O901 | AB519473 | None | | | | K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | O921 | O921 | AB519492 | None | | | | T12P, I13V, K14R, Q18H, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | O923 | O923 | AB519494 | None | | | | L10I, I13V, K20I, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| | O927 | O927 | AB519498 | None | | | | I13V, M36I, R41K, I62V, L63S, H69K, V82I, L89M | CRF01_AE |
| | O943 | O943 | AB519513 | None | | | | E35R, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| | O950 | O950 | AB519520 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| | NB01 | NB01 | AB519523 | None | | | | I15V, G16E, E35D, M36I, R41K, H69R, V77I, V82I, L89M, I93L | CRF01_AE |
| | NB44 | NB44 | AB519550 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | NB54 | NB54 | AB519556 | None | | | | K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | AH19 | AH19 | AB519571 | None | | | | I13V, K14R, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| | AH43 | AH43 | AB519590 | None | | | | T12P, I13V, K14R, G16E, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | NB19 | NB19 | AB519612 | None | | | | E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | NB41 | NB41 | AB519618 | None | | | | G16A, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| Zhang (2010) | 06112 | CNsd06112 | GQ443552 | None | | | | I13V, K20R, M36I, R41K, L63LP, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| | 06121 | CNsd06121 | GQ443567 | None | | | | I13V, E35D, M36V, R41K, I62V, H69K, K70R, V82I, L89M | CRF01_AE |
| | 0525 | CNsd0525 | GQ443579 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, K70KR, V82I, L89M | CRF01_AE |
| | 06149 | CNsd06149 | GQ443581 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Zolfo (2010) | A14533 | A 14533 M18 | HM565673 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| | A14493 | A 14493 M18 | HM565685 | None | | | | E35D, M36I, R41K, I62IV, H69K, V77VI, V82I, L89M | CRF01_AE |
| | A15274 | A 15274 M12 | HM565690 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | | A 15274 M18 | HM565613 | None | | | | I13V, I15V, K20KR, E35D, M36I, R41K, H69K, V82I, L89M, L97LF | CRF01_AE |
| | A13530 | A 13530 RS | HM565736 | None | | | | I13V, K20R, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| | | A 13530 M12 | HM565660 | None | | | | I13V, K20R, M36I, R41K, L63C, H69K, V82I, L89M, T91TI | CRF01_AE |
| | | A 13530 M18 | HM565659 | None | | | | I13V, K20R, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| | | A 13530 M24 | HM565658 | None | | | | I13V, K20R, M36I, N37NS, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| Bontell (2011) | Pat038 | 08.VL782Ui | HQ852878 | None | | | | I13V, K20I, E35D, M36I, R41K, D60E, Q61E, L63P, H69K, V82I, L89M | CRF01_AE |
| | Pat026 | 09.VL949Hs | HQ852890 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, V82I, L89M | CRF01_AE |
| Dean (2011) | IVVI0075 | IVVI0075 | JQ312337 | None | | | | I13V, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| Lazaro (2011) | AG-M9 | AG-M9 | HQ542619 | None | | | | W6WG, I13V, E35D, M36I, N37ND, R41RK, R57RK, H69K, V82I, L89M | CRF01_AE |
| | AG-M12 | AG-M12 | HQ542622 | None | | | | L10I, I13V, M36I, R41K, H69K, V82I, L89I | CRF01_AE |
| | AG-M25 | AG-M25 | HQ542633 | None | | | | I13V, K20R, M36I, R41K, K45KR, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| | DN-M13 | DN-M13 | HQ542664 | None | | | | I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | TG-M11 | TG-M11 | HQ542680 | None | | M46I | | I13V, M36I, N37S, R41K, H69K, V82I, L89M | CRF01_AE |
| | DT-M18 | DT-M18 | HQ542703 | None | | | | G16E, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | DT-M21 | DT-M21 | HQ542706 | None | | | | T12A, I13V, E35D, M36I, R41K, K45R, L63T, H69K, V82I, L89M | CRF01_AE |
| Ng (2011) | FREE024 | FREE024 | HQ539016 | None | | | | I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | FREE027 | FREE027 | HQ539018 | None | | | | I13V, E35D, M36I, R57K, H69K, V82I, L89M | CRF01_AE |
| | HM074 | HM074 | HQ539103 | None | | | | I13V, G16E, E35D, M36I, R57K, Q61E, H69K, K70R, V82I, L89M | CRF01_AE |
| | HM085 | HM085 | HQ539113 | None | | | | I13V, I15V, E35D, M36I, R57K, H69K, V82I, L89M | CRF01_AE |
| | HM086 | HM086 | HQ539114 | None | | | | I13V, K20I, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M | CRF01_AE |
| | HM100 | HM100 | HQ539126 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | HM108 | HM108 | HQ539134 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| | HM138 | HM138 | HQ539163 | None | | | | I13V, G16E, M36I, H69K, I72V, V82I, L89M | CRF01_AE |
| | HM143 | HM143 | HQ539168 | None | | | | I13V, E35D, M36I, R41K, I62V, L63P, H69K, K70R, V82I, L89M, T91I | CRF01_AE |
| | HM152 | HM152 | HQ539176 | None | | | | I13V, K20I, E35D, M36I, R57K, H69K, V82I, L89M | CRF01_AE |
| | MOVL134 | MOVL134 | HQ539199 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| Ngo-Giang-Huong (2011) | PHPT4015 | PHPT4015PR-RT | HQ996509 | None | | | | I13V, I15V, K20I, M36I, H69K, I72E, V82I, L89M | CRF01_AE |
| | PHPT4352 | PHPT4352PR-RT | HQ996515 | None | | | | T12A, K14R, I15IV, G16GA, Q18QL, M36D, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | PHPT4163 | PHPT4163PR-RT | HQ996517 | None | | | | I13V, I15IV, K20KI, E35D, M36I, R41K, K43KR, R57RK, H69K, V82I, L89M, T91V | CRF01_AE |
| Su (2011) | GXNN5341 | GXNN5341 | HQ588264 | None | | | | I13V, M36I, N37Y, R41K, H69K, V82I, L89M | CRF01_AE |
| | GXNN7232 | GXNN7232 | HQ588303 | None | | | | M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| Ye (2011) | BJ07371 | BJ07371 | JF906624 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | BJ07639 | BJ07639 | JF906696 | None | | | | I13V, L19M, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| Zeng (2011) | K5 | K5 | JF505561 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| | K55 | K55 | JF505565 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | K37 | K37 | JF505592 | None | | | | I13V, E35D, M36I, R41K, H69K, I72M, V82I, L89M | CRF01_AE |
| | K41 | K41 | JF505564 | None | | | | I13V, I15V, K20I, E35D, M36I, R41K, H69K, K70R, I72V, V82I, L89M | CRF01_AE |
| An (2012) | 08LNA004 | 08LNA004 | JX960617 | None | | | | T12S, L19I, E35D, M36I, R41K, L63M, H69K, V82I, L89M, I93L | CRF01_AE |
| | 09LNA041 | 09LNA041 | JX960618 | None | | | | L19I, E35D, M36I, R41K, L63T, H69K, V82I, L89M, I93L | CRF01_AE |
| | 10LNA294 | 10LNA294 | JX960619 | None | | | | T12S, L19I, K20R, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L | CRF01_AE |
| | 10LNA918 | 10LNA918 | JX960620 | None | | | | T12S, L19I, K20R, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L | CRF01_AE |
| | 09LNA425 | 09LNA425 | JX960621 | None | | | | T12S, L19I, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L | CRF01_AE |
| | 10LNA264 | 10LNA264 | JX960622 | None | | | | L19I, E35D, M36I, R41K, L63V, H69K, V82I, L89M, I93L | CRF01_AE |
| | 09LNA527 | 09LNA527 | JX960625 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| | 10LNA105 | 10LNA105 | JX960626 | None | | | | I13V, G16E, L19M, K20R, E35D, M36I, R41K, K45R, I62V, L63T, H69K, V82I, L89M, I93L | CRF01_AE |
| Chen (2012) | YN09DH0001 | YN09DH0001 | JQ658474 | None | | | | I13V, E35D, M36I, R41K, H69K, I72IV, V77I, V82I, L89M | CRF01_AE |
| | YN09DH0002 | YN09DH0002 | JQ658475 | None | | | | I13V, E35D, M36I, R41K, H69K, V77I, V82I, L89M | CRF01_AE |
| | YN09DH0016 | YN09DH0016 | JQ658489 | None | | | | L10I, I13V, I15V, K20I, E35D, M36I, L63P, H69K, V82I, L89M, I93V | CRF01_AE |
| | YN10DH0058 | YN10DH0058 | JQ658681 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, K70R, I72IV, V82I, L89M | CRF01_AE |
| | YN10DH0085 | YN10DH0085 | JQ658706 | None | | | | I13V, M36I, R41K, I62V, L63P, H69K, K70R, V82I, L89M | CRF01_AE |
| | YN10DH0104 | YN10DH0104 | JQ658725 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| | YN10DH0142 | YN10DH0142 | JQ658761 | None | | | | L10I, I13V, G16E, E35D, M36I, P39Q, I62V, L63P, H69K, K70R, V82I, L89M | CRF01_AE |
| Karlsson (2012) | SE_155 | SE_155 | JQ698774 | None | | | | E35D, M36I, R41K, R57K, H69K, V82I, L89I | CRF01_AE |
| | SE_214 | SE_214 | JQ698818 | None | | | | L10I, I13V, I15V, K20KI, E35D, M36I, N37DE, K45KR, L63P, H69K, V82I, L89M, I93V | CRF01_AE |
| Nazziwa (2012) | 5119101 | 5119101 | JX499006 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, I62V, L63H, H69K, V82I, L89M | CRF01_AE |
| Rolland (2012) | AA001a12L | AA001a12L | JX446647 | None | | | | I13V, L19M, E35D, M36I, R41K, I62V, L63P, H69K, V77I, V82I, L89M | CRF01_AE |
| | AA023a11L | AA023a11L | JX446974 | None | | | | I13V, E35D, M36I, R41K, K43R, I62V, L63P, H69K, V82I, L89M | CRF01_AE |
| | AA035a03L | AA035a03L | JX447096 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | AA051b03L | AA051b03L | JX447291 | None | | | | L10I, I13V, K14R, E35D, M36I, R41K, K43R, I62V, L63S, H69K, V82I, L89M | CRF01_AE |
| | AA073a_LH5 | AA073a_LH5 | JX447512 | None | | | | L10V, I13V, E35D, M36I, R41K, K43R, H69K, V82I, L89M | CRF01_AE |
| Telan (2012) | 12032299 | 12032299 | AB747545 | None | | | | K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| Tran (2012) | HPA259 | HPA259 | AB690918 | None | | | | K20R, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | HPA278 | HPA278 | AB690924 | None | | | | E35D, M36I, R41K, I62IV, H69K, V82I, L89M, I93IL | CRF01_AE |
| | HPA401 | HPA401 | AB690940 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M, I93IV | CRF01_AE |
| | HPC064 | HPC064 | AB690960 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | HPV2_064 | HPV2_064 | AB690962 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | HPV2_077 | HPV2_077 | AB690963 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, V82I, L89M | CRF01_AE |
| | HPV2_081 | HPV2_081 | AB690964 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | HPV2_119 | HPV2_119 | AB690967 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | HPV2_217 | HPV2_217 | AB690981 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| Trinh (2012) | VN-70 | VN-70 | GQ161857 | None | | | | I13V, G16E, E35D, M36I, P39S, R41K, H69K, V82I, L89M | CRF01_AE |
| | VN-80 | VN-80 | GQ161865 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| | VN-114 | VN-114 | GQ161886 | None | | | | I13V, E35D, M36I, R41K, D60E, I62V, H69K, K70R, V82I, L89M | CRF01_AE |
| | VN-44 | VN-44 | HQ876690 | None | | | | E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| | VN-61 | VN-61 | HQ876701 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M | CRF01_AE |
| Yang (2012) | GZ049 | GZ049 | JN848854 | None | | | | I13V, E35D, M36I, R41K, I62IV, L63LF, H69K, V82I, L89M | CRF01_AE |
| | GZ208 | GZ208 | JN848904 | None | | | | E35D, M36I, R41K, H69K, K70KR, V82I, L89M, I93L | CRF01_AE |
| | GZ246 | GZ246 | JN848914 | None | | | | I13V, G16E, K20KR, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| Frentz (2013) | EHR-07924 | EHR-07924 | JX299669 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| | EHR-42083 | EHR-42083 | JX300251 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | EHR-62783 | EHR-62783 | JX300592 | None | | | | I13V, M36I, R41K, H69K, V82I, L89IM | CRF01_AE |
| | EHR-80821 | EHR-80821 | JX300913 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, V82I, L89M, Q92QKR | CRF01_AE |
| Hawke (2013) | 21014077 | 21014077 | KC238057 | None | | | | L10I, I13V, I15V, G16GE, E35D, M36I, R41K, G68GE, H69K, V82I, L89M, T91I | CRF01_AE |
| Li (2013) | 2873 | 2873 | JQ901079 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | 2895 | 2895 | JQ901096 | None | | | | I13V, L19M, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |