Author (yr) |
Patient |
Isolate |
Acc# |
PIs |
Wks | PIMajorDRMs |
PIMinorDRMs |
OtherMut | Subtype |
Winslow (1995) | H9145Thai | H9145Thai | U12741 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| H9156Thai | H9156Thai | U12742 | None | | | | T4TA, I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| H9461Thai | H9461Thai | U12743 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| H9466Thai | H9466Thai | U12744 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Carr (1996) | CM240 | CM240 | U54771 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Gao (1996) | 90CR102 | 90CR402 | U51188 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Cornelissen (1997) | 92TH003 | 92TH003 | AF009382 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH005 | 92TH005 | AF009383 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH007 | 92TH007 | AF009384 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH009 | 92TH009 | AF009385 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, I72V, L89M | CRF01_AE |
| 92TH011 | 92TH011 | AF009386 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH015 | 92TH015 | AF009387 | None | | | | I13V, E35D, M36I, P39T, R41K, H69K, L89M | CRF01_AE |
| 92TH018 | 92TH018 | AF009388 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH019 | 92TH019 | AF009389 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH021 | 92TH021 | AF009391 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH023 | 92TH023 | AF009393 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 92TH024 | 92TH024 | AF009394 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Gatanaga (1999) | Gat-R1 | agaR1 | AB020911 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Anderson (2000) | CD11697 | CD11697 | AF197340 | None | | | | L5F, I13V, G16E, E35D, M36I, H69K, K70R, L89M | CRF01_AE |
| CF4071 | CF4071 | AF197341 | None | | | | L10I, I13V, E35D, M36I, R41K, L63I, H69K, L89M | CRF01_AE |
| 93TH057 | 93TH057 | AF197338 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 93TH065 | 93TH065 | AF197339 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Piyasirisilp (2000) | SP_11F | SP_11F | AY008718 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Si-Mohamed (2000) | AS_NZI | AS_NZI | AF199280 | None | | | | I13V, L19F, E35D, M36I, R41K, L63P, H69K, K70R, V77I, L89M | CRF01_AE |
Vergne (2000) | LVMP582 | LVMP582 | AJ286930 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| LV1 | LV1 | AJ286134 | None | | | | L10I, I13V, I15V, E35N, M36I, N37D, R41K, H69Q, L89M | CRF01_AE |
| LVMP1152 | LVMP1152 | AJ287011 | None | | | | R8Q, L10V, I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LVMP38 | LVMP38 | AJ287043 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LVMP601 | LVMP601 | AJ287053 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
Carr (2001) | CM53122 | CM53122 | AY037284 | None | | | | I13V, E35N, M36I, N37D, R41K, L63P, H69K, V77I, L89M | CRF01_AE |
Caumont (2001) | AC3 | AC3 | AF326196 | None | | | | I13V, E35D, M36I, R41K, H69KR, L89M | CRF01_AE |
| AC23 | AC23 | AF326195 | None | | | | L10V, I13V, I15IV, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| AC16 | AC16 | AF326194 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AC14 | AC14 | AF326193 | None | | | | I13V, E35ED, M36I, R41K, H69K, L89M | CRF01_AE |
| AC11 | AC11 | AF326174 | None | | | | I13V, G16E, E35D, M36I, R41K, H69I, I72R, L89M | CRF01_AE |
| AC9 | AC9 | AF326190 | None | | | | I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| AC42 | AC42 | AF326188 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AC41 | AC41 | AF326187 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AC40 | AC40 | AF326186 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93IL | CRF01_AE |
| AC36 | AC36 | AF326184 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| AC35 | AC35 | AF326183 | None | | | | I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| AC34 | AC34 | AF326182 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AC32 | AC32 | AF326181 | None | | | | I13V, G16E, E34K, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AC27 | AC27 | AF326179 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AC20 | AC20 | AF326177 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| AC18 | AC18 | AF326175 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
Eshleman (2001) | SE522 | SE522 | AF388144 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, H69K, K70KR, L89M | CRF01_AE |
Sirivichayakul (2001) | SS045127 | 045127 | AF191193 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| SS045123 | 045123 | AF191192 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| SS045108 | 045108 | AF191189 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| SS045107 | 045107 | AF187039 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| SS045103 | 045103 | AF187038 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M, F99L | CRF01_AE |
| SS045098 | 045098 | AF187037 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63H, H69K, L89M, I93V | CRF01_AE |
Dowling (2002) | KNH1097 | KNH1097 | AF457064 | None | | | | I13V, E35D, M36I, P39A, R41K, K45R, R57K, L63P, H69K, L89M | CRF01_AE |
| KER2008 | KER2008 | AF457052 | None | | | | L10V, I13V, I15V, Q18E, L19M, K20R, E35D, M36I, R41K, R57K, I62V, L63S, H69K, L89M | CRF01_AE |
Eshleman (2002) | 125636u | 125636u | AF410213 | None | | | | I13V, E35D, M36I, R41K, R57RK, L63S, H69K, V77I, L89M | CRF01_AE |
| 134248p | 134248p | AF410224 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 146922v | 146922v | AF410246 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Fonjungo (2002) | CM93 | CM93 | AF406730 | None | | | | I13V, K20R, E35N, M36I, N37D, R41K, H69K, L89M, I93L | CRF01_AE |
| CM235 | CM235 | AF406727 | None | | | | I13V, I15V, E35D, M36I, N37D, L63P, H69K, L89M, I93L | CRF01_AE |
| CM225 | CM225 | AF406723 | None | | | | I13V, E35N, M36I, N37D, R41K, H69K, L89M, I93L | CRF01_AE |
| CM201 | CM201 | AF406717 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M, I93L | CRF01_AE |
| CM133 | CM133 | AF406711 | None | | | | I13V, E35N, M36I, N37D, R41K, L63V, I64M, H69K, L89M, I93L | CRF01_AE |
Gibb (2002) | DMG3 | 3_w0 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Holguin (2002) | AH_M2133 | AH_M2133 | AF247018 | None | | | | I13V, A22T, L33V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Pandrea (2002) | IP_97CIRMF58 | 97CIRMF58 | AY140641 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, L63T, I64M, H69K, I72T, L89M | CRF01_AE |
Papa (2002) | 37 | GR37 | AF385361 | None | | | | I13V, I15V, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
Tebit (2002) | 99CMLB26 | 99CMLB26 | AF355310 | None | | | | I13V, E35N, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| 99CMLB25 | 99CMLB25 | AF355309 | None | | | | L10V, I13V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| 99CMLB4 | 99CMLB4 | AF355303 | None | | | | I13V, E35N, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Vergne (2002) | LV16M | LV16M | AJ313417 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, L63T, H69K, K70R, L89M | CRF01_AE |
Ariyoshi (2003) | JPN43 | JPN43A | AY900689 | None | | | | I13V, I15V, E35D, M36I, R41K, H69KQ, L89M | CRF01_AE |
| JPN27 | JPN27A | AY900690 | None | | | | I13V, G17E, K20R, E35D, M36I, R41K, R57RK, I62IV, H69K, L89M | CRF01_AE |
| | JPN27B | | None | | | | I13V, G17E, K20R, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| JPN10 | JPN10 | AY900695 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M, F99FL | CRF01_AE |
| JPN13 | JPN13A | | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| | JPN13B | | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| JPN36 | JPN36 | AY900863 | None | | | | I13V, I15IV, E35D, M36I, R41K, L63PS, H69K, L89M | CRF01_AE |
| JPN1 | JPN1 | AY900866 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| JPN4 | JPN4 | | None | | | | I13V, E35ED, M36I, R41K, H69K, L89M | CRF01_AE |
| JPN5 | JPN5 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| JPN20 | JPN20 | | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| JPN23 | JPN23 | AY900870 | None | | | | I13V, E35D, M36I, R41K, Y59YC, H69K, L89M | CRF01_AE |
| JPN24 | JPN24 | AY900872 | None | | | L33F | T12S, I13V, M36I, N37D, R41K, K45KE, H69K, K70R, L89M, I93L | CRF01_AE |
Hanna (2003) | HG051 | HG051 | AY049627 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Huang (2003) | CM235 | CM235 | AF447816 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| POC30506 | POC30506 | AF447817 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| ID12 | ID12 | AF447824 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ID17 | ID17 | AF447825 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 42368 | 42368 | AF447835 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NP03 | NP03 | AF447840 | None | | | | I13V, K20KR, E35D, M36I, N37D, R41K, H69K, V82VI, L89M | CRF01_AE |
| CM240 | CM240 | AF447851 | None | | | | L5LF, I13V, E35D, M36I, R41K, R57K, Q58QP, L63LHP, I64IV, H69K, L89M | CRF01_AE |
Jorgensen (2003) | JLB_Pat19 | HIM419445 | AJ419445 | None | | | | I13V, L33V, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF01_AE |
| JLB_Pat33 | HIM419459 | AJ419459 | None | | | | I13V, L19LM, K20KR, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| JLB_Pat67 | HIM419493 | AJ419493 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Lan (2003) | NTHvr10 | NTHvr10 | AY238161 | None | | | | I13V, E35ED, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr102 | NTHvr102 | AY238226 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63C, H69K, I72IV, L89M | CRF01_AE |
| NTHvr104 | NTHvr104 | AY238269 | None | | | | I13V, E35D, M36I, R41K, E65D, H69K, L89M | CRF01_AE |
| NTHvr106 | NTHvr106 | AY238271 | None | | | | I13V, M36I, R41K, H69K, V82VI, L89M | CRF01_AE |
| NTHvr107 | NTHvr107 | AY238272 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr108 | NTHvr108 | AY238273 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr11 | NTHvr11 | AY238162 | None | | | | T12P, I13V, I15IV, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr110 | NTHvr110 | AY238275 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr114 | NTHvr114 | AY238278 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr116 | NTHvr116 | AY238280 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr118 | NTHvr118 | AY238282 | None | | | | L10I, I13V, G16GE, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr120 | NTHvr120 | AY238227 | None | | | | I13V, G16A, K20KR, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr123 | NTHvr123 | AY238230 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr125 | NTHvr125 | AY238232 | None | | | | L10I, I13V, G16A, E35D, M36I, N37D, R41K, I62IV, H69K, K70R, L89M | CRF01_AE |
| NTHvr127 | NTHvr127 | AY238234 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr130 | NTHvr130 | AY238237 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| NTHvr131 | NTHvr131 | AY238238 | None | | | | I13V, G16A, E35D, M36I, R41K, H69K, L89M, Q92QL | CRF01_AE |
| NTHvr133 | NTHvr133 | AY238240 | None | | | | I13V, L19IM, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr134 | NTHvr134 | AY238241 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr135 | NTHvr135 | AY238242 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr136 | NTHvr136 | AY238243 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr138 | NTHvr138 | AY238245 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| NTHvr149 | NTHvr149 | AY238254 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr153 | NTHvr153 | AY238257 | None | | | | W6W*, I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr154 | NTHvr154 | AY238258 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr157 | NTHvr157 | AY238260 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr16 | NTHvr16 | AY238165 | None | | | | I13V, G16E, L19LM, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr160 | NTHvr160 | AY238263 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr162 | NTHvr162 | AY238265 | None | | | | I13V, K14KR, K20R, E35D, M36I, R41K, R57RK, L63LP, H69K, L89M | CRF01_AE |
| NTHvr163 | NTHvr163 | AY238146 | None | | | | L5LR, I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| NTHvr17 | NTHvr17 | AY238166 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr170 | NTHvr170 | AY238206 | None | | | | I13V, K20R, E35ED, M36I, R41K, H69K, L89M, I93IL | CRF01_AE |
| NTHvr172 | NTHvr172 | AY238208 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr175 | NTHvr175 | AY238211 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr176 | NTHvr176 | AY238212 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr178 | NTHvr178 | AY238213 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr179 | NTHvr179 | AY238214 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr18 | NTHvr18 | AY238167 | None | | | | I13V, G16E, E35DN, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| NTHvr180 | NTHvr180 | AY238215 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89I | CRF01_AE |
| NTHvr183 | NTHvr183 | AY238218 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr185 | NTHvr185 | AY238220 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| NTHvr192 | NTHvr192 | AY238287 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr194 | NTHvr194 | AY238148 | None | | | | T12TS, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr20 | NTHvr20 | AY238168 | None | | | | I13V, L19M, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr21 | NTHvr21 | AY238169 | None | | | | I13V, G16E, E35D, M36I, N37ND, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr23 | NTHvr23 | AY238171 | None | | | | I13V, G16A, G27GV, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr29 | NTHvr29 | AY238176 | None | | | V11VI | I13V, G16E, K20KR, E35D, M36I, R41K, K43R, R57K, H69K, K70R, L89M | CRF01_AE |
| NTHvr3 | NTHvr3 | AY238157 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr39 | NTHvr39 | AY238179 | None | | | | I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| NTHvr42 | NTHvr42 | AY238186 | None | | | | I13V, G16GA, E35D, M36I, N37ND, R41K, H69K, K70KR, L89M | CRF01_AE |
| NTHvr43 | NTHvr43 | AY238149 | None | | | | I13V, K20R, E35D, M36I, R41K, K43R, L63C, H69K, L89M, C95V | CRF01_AE |
| NTHvr46 | NTHvr46 | AY238188 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr47 | NTHvr47 | AY238189 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr48 | NTHvr48 | AY238190 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr50 | NTHvr50 | AY238192 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr57 | NTHvr57 | AY238195 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, L63CR, H69K, L89M | CRF01_AE |
| NTHvr58 | NTHvr58 | AY238154 | None | | | | I13V, K14R, I15V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr59 | NTHvr59 | AY238196 | None | | | | T12TA, I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr60 | NTHvr60 | AY238197 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr63 | NTHvr63 | AY238155 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr66 | NTHvr66 | AY238180 | None | | | V11VI | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NTHvr68 | NTHvr68 | AY238201 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr69 | NTHvr69 | AY238181 | None | | | | I13V, Q18QR, E35D, M36I, R41K, H69K, V77VL, L89M | CRF01_AE |
| NTHvr7 | NTHvr7 | AY238159 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr70 | NTHvr70 | AY238182 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr71 | NTHvr71 | AY238183 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| NTHvr72 | NTHvr72 | AY238312 | None | | | | L10I, I13V, G16GE, M36I, R41K, L63C, H69K, K70KR, L89I | CRF01_AE |
| NTHvr77 | NTHvr77 | AY238293 | None | | | | I13V, E35D, M36I, R41K, K55E, R57K, Q61QH, H69K, L89M | CRF01_AE |
| NTHvr78 | NTHvr78 | AY238294 | None | | | | I13V, G16E, E35D, M36I, R41K, L63LCFR, H69K, L89M | CRF01_AE |
| NTHvr79 | NTHvr79 | AY238295 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr8 | NTHvr8 | AY238160 | None | | | | I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| NTHvr80 | NTHvr80 | AY238296 | None | | | | T12P, I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr84 | NTHvr84 | AY238297 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NTHvr85 | NTHvr85 | AY238298 | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| NTHvr86 | NTHvr86 | AY238299 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70KR, L89M | CRF01_AE |
| NTHvr87 | NTHvr87 | AY238300 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NTHvr89 | NTHvr89 | AY238302 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, R57RK, H69K, K70R, L89M | CRF01_AE |
| NTHvr96 | NTHvr96 | AY238308 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| NTHvr97 | NTHvr97 | AY238309 | None | | | | I13V, G16E, E35D, M36I, H69K, K70R, L89M | CRF01_AE |
Maljkovic (2003) | MI_Pat8 | 00SE20197 | AY165249 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, V82VI, L89M | CRF01_AE |
| MI_Pat13 | 01SE21427 | AY165258 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MI_Pat16 | 98SE14962 | AY165194 | None | | | | I13V, M36I, N37S, R41K, K43R, Q61H, H69K, L89M | CRF01_AE |
| MI_Pat21 | 01SE22198 | AY165279 | None | | | | T12P, I13V, E35D, M36I, R41K, R57RK, L63PS, H69K, L89M | CRF01_AE |
| MI_Pat40 | 01SE22387 | AY165276 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MI_Pat43 | 00SE19889 | AY165239 | None | | | | I13V, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| MI_Pat53 | 00SE19382 | AY165184 | None | | | | I13V, I15V, E35D, M36V, R41K, R57K, H69K, L89M | CRF01_AE |
| MI_Pat76 | 01SE21951 | AY165265 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MI_Pat77 | 00SE20182 | AY165248 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Njouom (2003) | 58pol | 58pol | AY204320 | None | | | | I13V, K20R, E35N, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
Shafer (2003) | A384_0248 | 0248a | EF548206 | None | | | | I13V, M36I, R41K, I62IV, L63LP, C67CY, H69K, L89M, F99FL | CRF01_AE |
Tovanabutra (2003) | 02TH_OUR1331 | 02_1331 | AF529572 | None | | | L33I | I13V, E35D, M36I, R41K, K43R, H69K, T74S, L89M | CRF01_AE |
| 02TH_OUR1332 | 02_1332 | AF529573 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, I72V, L89I | CRF01_AE |
| 99TH_R2399 | 99TH_R2399 | AF530576 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Watanaveeradej (2003) | NP1809 | NP1809 | AY262830 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
Wilbe (2003) | UG035 | UG035 | AY352656 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Deshpande (2004) | in55 | in55 | AY515770 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Eshleman (2004) | ESH_Pat15 | ESH252 | AY435252 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| ESH_Pat35 | ESH403 | AY435280 | None | | | | L10I, I13V, E35D, M36I, R41K, H69Q, L89M | CRF01_AE |
| ESH_Pat98 | ESH576 | AY435302 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| ESH_Pat120 | ESH659 | AY435324 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Eshleman (2004) | ABB165 | ABB165 | AY444192 | None | | | | L10LIV, I13V, I15IV, K20KR, E35D, M36I, N37D, R41K, E65D, H69K, L89M | CRF01_AE |
| ABB08 | ABB08 | AY444189 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Thai203 | Thai203 | AY444222 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Thai204 | Thai204 | AY444223 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| Thai205 | Thai205 | AY444224 | None | | | | I13V, I15IV, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Thai207 | Thai207 | AY444225 | None | | | | I13V, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| Thai209 | Thai209 | AY444227 | None | | | | I13V, E35ED, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| AB511 | AB511 | AY444188 | None | | | | I13V, K14KR, K20R, E35DN, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| ABB145 | ABB145 | AY444295 | None | | | | I13V, E35N, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| Thai211 | Thai211 | AY444229 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Kijak (2004) | 1867LE | 02CM.1867 | AY371165 | None | | | | I13V, E35N, M36I, N37D, R41K, L63T, H69K, L89M | CRF01_AE |
| 0130NY | 01CM.0130 | AY371167 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, I72R, L89M | CRF01_AE |
Konings (2004) | KF_Pat30 | 00CM3073 | AY359712 | None | | | | I13V, E35N, M36I, N37D, R41K, K43R, L63P, H69K, L89M | CRF01_AE |
| KF_Pat32 | 00CM3330 | AY359714 | None | | | | I13V, K14R, E35N, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| KF_Pat33 | 00CM3454 | AY359715 | None | | | | L10I, I13V, K20R, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| KF_Pat34 | 00CM3476 | AY359716 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, H69K, I72L, L89M, I93M | CRF01_AE |
| KF_Pat35 | 00CM2663 | AY359717 | None | | | | I13V, K20R, E35N, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| KF_Pat37 | 00CM1374 | AY359719 | None | | | | I13V, E35D, M36I, R41K, I62V, L63P, H69K, L89M | CRF01_AE |
| KF_Pat38 | 01CM5487 | AY359720 | None | | | | I13V, M36I, P39Q, R41K, H69K, L89M | CRF01_AE |
| KF_Pat101 | 01CM6283 | AY359783 | None | | | | I13V, I15V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Meloni (2004) | DDJ369 | DDJ369 | AY521631 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Montes (2004) | MB_patRAI | 01_RAI715 | AJ577978 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89I | CRF01_AE |
Snoeck (2004) | BE24 | BE24 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BE25 | BE25 | AY900732 | None | | | | T12TP, I13V, L19I, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| BE29 | BE29 | | None | | | | I13V, K20KR, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| BE30 | BE30 | AY900736 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BE31 | BE31 | | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| BE38 | BE38 | AY900741 | None | | | | L10I, I13V, E35D, M36I, N37D, R41K, H69K, K70KR, L89M | CRF01_AE |
| BE46 | BE46 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BE50 | BE50 | AY900751 | None | | | | T12A, I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| BE56 | BE56 | AY900755 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
Tovanabutra (2004) | 02THOUR737I | 02_737I | AY358037 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 01THOUR609I | 01_609I | AY358040 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 01THOUR642I | 01_642I | AY358041 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 99THOUR044I | 99_044I | AY358042 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 99THOUR066I | 99_066I | AY358043 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 99THOUR098I | 99_098I | AY358044 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 99THOUR164I | 99_164I | AY358045 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| 00THOUR201I | 00_201I | AY358046 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 99THOUR202I | 99_202I | AY358047 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| 99THOUR258I | 99_258I | AY358049 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 01THOUR414I | 01_414I | AY358050 | None | | | | L10V, I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 99THOUR422I | 99_422I | AY358051 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 01THOUR647I | 01_647I | AY358056 | None | | | | I13V, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 01THOUR702I | 01_702I | AY358059 | None | | | | I13V, E35D, M36I, R41K, R57K, C67Y, H69K, L89M | CRF01_AE |
| 00THOUR746I | 00_746I | AY358061 | None | | | | T12P, I13V, G16A, E35D, M36I, R41K, D60E, H69K, L89M | CRF01_AE |
| 00THOUR810I | 00_810I | AY358063 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 01THOUR830I | 01_830I | AY358064 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 99THOUR008I | 99_008I | AY358065 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 00THOUR200I | 00_200I | AY358066 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| 00THOUR721I | 00_721I | AY358067 | None | | | | I13V, E35D, M36I, R41K, H69R, L89M | CRF01_AE |
| 02THOUR840I | 02_840I | AY358070 | None | | | | I13V, E35D, M36I, R57K, L63Q, H69K, L89M | CRF01_AE |
Arien (2005) | VI2621 | VI2621 | DQ177215 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
Brown (2005) | BB_97TH_NP1695 | 97TH_1695 | AY713419 | None | | | | I13V, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| BB_97TH_NP1525 | 97TH_1525 | AY713420 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BB_96TH_NP1046 | 96TH_1046 | AY713421 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| BB_99TH_NI1052 | 99TH_1052 | AY713423 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| BB_96TH_M02138 | 96TH_02138 | AY713424 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BB_90TH_CM244 | 90TH_CM244 | AY713425 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BB_96TH_NI1149 | 96TH_1149 | AY713426 | None | | | | I13V, E35D, M36I, R41K, H69K, V77I, L89M, T91V | CRF01_AE |
Grossman (2005) | 26630 | 26630PR418 | | None | | | | I13V, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M, L97F, N98K | CRF01_AE |
Holguin (2005) | 1068-00 | 00_1068-00 | AY248326 | None | | | | I13V, E35N, M36I, N37D, P39S, R41K, L63P, H69K, L89M | CRF01_AE |
Hsu (2005) | LYH_AY870190 | BAA161372 | AY870190 | None | | | | I13V, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| LYH_AY870191 | BAA161374 | AY870191 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870192 | BAA161376 | AY870192 | None | | | | L10I, I13V, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| LYH_AY870193 | BAA161377 | AY870193 | None | | | | L10I, I13V, K14R, E35D, M36I, N37D, R41K, L63C, H69K, L89M | CRF01_AE |
| LYH_AY870194 | BAA161378 | AY870194 | None | | | | I13V, E35D, M36I, R41K, R57K, L63A, H69K, L89M | CRF01_AE |
| LYH_AY870196 | BAA161380 | AY870196 | None | | | | I13V, I15V, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| LYH_AY870197 | BAA161381 | AY870197 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870199 | BAA161383 | AY870199 | None | | | | L10I, I13V, G16E, K20KR, E35D, M36I, N37NK, P39S, R41K, L63V, H69K, I72V, L89M | CRF01_AE |
| LYH_AY870201 | BAA161385 | AY870201 | None | | | | Q7QR, I13V, G16E, E35D, M36I, R41K, H69K, L89M, Q92K | CRF01_AE |
| LYH_AY870202 | BAA161386 | AY870202 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, K45R, H69K, K70KR, L89M | CRF01_AE |
| LYH_AY870203 | BAA161388 | AY870203 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870204 | BAA161389 | AY870204 | None | | | | I13V, M36I, N37S, R41K, H69K, I72V, L89M | CRF01_AE |
| LYH_AY870205 | BAA161390 | AY870205 | None | | | | I13V, G16GE, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870206 | BAA161392 | AY870206 | None | | | | T12P, I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| LYH_AY870208 | BAA161394 | AY870208 | None | | | | I13V, I15V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| LYH_AY870209 | BAA161395 | AY870209 | None | | | | I13V, E35D, M36I, R57K, H69K, L89M, L97I | CRF01_AE |
| LYH_AY870210 | BAA161397 | AY870210 | None | | | | I13V, M36I, R41K, H69K, I72IV, L89M | CRF01_AE |
| LYH_AY870211 | BAA161398 | AY870211 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870212 | BAA161399 | AY870212 | None | | | | I13V, L19I, E35D, M36I, P39S, R41K, Q61E, I62V, L63P, H69K, L89M | CRF01_AE |
| LYH_AY870213 | BAA161400 | AY870213 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870214 | BAA161401 | AY870214 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870215 | BAA161402 | AY870215 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870216 | BAA161404 | AY870216 | None | | | | I13V, G16E, E35D, M36I, G40GE, R41K, Q61QE, H69K, K70KR, L89M, I93L | CRF01_AE |
| LYH_AY870217 | BAA161405 | AY870217 | None | | | | I13V, I15IV, K20KR, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870218 | BAA161407 | AY870218 | None | | | L33F | I13V, G16E, E35D, M36I, R41K, L63S, H69K, K70R, L89I, I93L | CRF01_AE |
| LYH_AY870219 | BAA161408 | AY870219 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LYH_AY870220 | BAA161409 | AY870220 | None | | | | I13V, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| LYH_AY870221 | BAA161410 | AY870221 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| LYH_AY870223 | BAA161413 | AY870223 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| BAA148361 | BAA148361 | AY870146 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70KR, I72V, L89M | CRF01_AE |
| BAA150606 | BAA150606 | AY870151 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| BAA150609 | BAA150609 | AY870153 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| BAA150613 | BAA150613 | AY870154 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, V82I, L89I | CRF01_AE |
| BAA150616 | BAA150616 | AY870155 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BAA150620 | BAA150620 | AY870157 | None | | | | I13V, G16E, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| BAA154763 | BAA154763 | AY870164 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| BAA154764 | BAA154764 | AY870165 | None | | | | I13V, I15V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| BAA154768 | BAA154768 | AY870166 | None | | | | L10V, I13V, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| BAA154769 | BAA154769 | AY870167 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| BAA157664 | BAA157664 | AY870171 | None | | | | I13V, I15IV, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| BAA157666 | BAA157666 | AY870172 | None | | | L89V | I13V, K20I, E35D, M36I, R41K, H69K | CRF01_AE |
| BAA157667 | BAA157667 | AY870173 | None | | | | L10I, I13V, E35D, M36I, R41K, K55KR, L63P, H69K, L89M, I93V | CRF01_AE |
| BAA157668 | BAA157668 | AY870174 | None | | | | L10LV, I13V, K14KR, I15V, E35D, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
| BAA157670 | BAA157670 | AY870175 | None | | | | I13V, E35D, M36I, R41K, H69K, V82VI, L89M | CRF01_AE |
| BAA157671 | BAA157671 | AY870176 | None | | | | I13V, K14R, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BAA157673 | BAA157673 | AY870178 | None | | | | I13V, E35D, M36I, N37NT, R41K, H69K, L89M | CRF01_AE |
| BAA157676 | BAA157676 | AY870181 | None | | | | L10I, I13V, E35D, M36I, N37D, R41K, L63S, H69K, K70R, L89M | CRF01_AE |
| BAA157677 | BAA157677 | AY870182 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, V77I, L89I, T91V | CRF01_AE |
| BAA157680 | BAA157680 | AY870185 | None | | | | I13V, E35D, M36I, R41K, K43KR, H69K, V82I, L89M | CRF01_AE |
| BAA157684 | BAA157684 | AY870188 | None | | | | L10I, I13V, G16GE, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| BAA161414 | BAA161414 | AY870224 | None | | | | I13V, I15V, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| BAA161420 | BAA161420 | AY870227 | None | | | | I13V, E35D, M36I, R41K, Q61QE, H69K, L89M | CRF01_AE |
| BAA161440 | BAA161440 | AY870236 | None | | | | I13V, I15V, E35D, M36I, R41K, D60E, H69K, L89M, I93L | CRF01_AE |
| BAA161446 | BAA161446 | AY870239 | None | | | | I13V, G16A, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BAA161447 | BAA161447 | AY870240 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| BAA161451 | BAA161451 | AY870244 | None | | | | I13V, K14R, I15V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Laeyendecker (2005) | Pingxiang-13 | P13 | AY635692 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-14 | P14 | AY635693 | None | | | | I13V, M36I, R41K, I64IL, H69K, L89M | CRF01_AE |
| Pingxiang-17 | P17 | AY635694 | None | | | | I13V, E35D, M36I, R41K, I64IL, H69K, L89M | CRF01_AE |
| Pingxiang-61 | P61 | AY635697 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-81 | P81 | AY635698 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-90 | P90 | AY635699 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-94 | P94 | AY635700 | None | | | | I13V, E35D, M36I, R41K, I64IL, H69K, L89M | CRF01_AE |
| Pingxiang-104 | P104 | AY635701 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-116 | P116 | AY635703 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-124 | P124 | AY635706 | None | | | | I13V, E34E*, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-126 | P126 | AY635707 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-127 | P127 | AY635708 | None | | | | I13V, E35D, M36I, R41K, K45P, H69K, L89M | CRF01_AE |
| Pingxiang-152 | P152 | AY635709 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-187 | P187 | AY635710 | None | | | | T12A, I13V, G16E, E34*, E35D, M36I, R41K, K55M, H69K, L89M, I93L | CRF01_AE |
| Pingxiang-250 | P250 | AY635712 | None | | | | T12TA, I13V, E34*, E35D, M36I, R41K, K45*GLV, K55KM, H69K, L89M | CRF01_AE |
| Pingxiang-264 | P264 | AY635713 | None | | | | T12TA, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-269 | P269 | AY635714 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-270 | P270 | AY635715 | None | | | | I13V, E35D, M36I, R41K, K45KPQT, H69K, L89M | CRF01_AE |
| Pingxiang-291 | P291 | AY635716 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pingxiang-302 | P302 | AY635717 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| Pingxiang-311 | P311 | AY635718 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Binyang-527 | B527 | AY635742 | None | | | | I13V, E35D, M36I, R41K, H69R, L89M, I93L | CRF01_AE |
| Binyang-528 | B528 | AY635743 | None | | | | I13V, E34E*, E35D, M36I, R41K, H69R, L89M, I93L | CRF01_AE |
Li (2005) | 96CNKM003 | 96CNKM003 | AB213669 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M, I93L | CRF01_AE |
Ly (2005) | NL_KHM_CA12 | KHM_CA12 | DQ013522 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA14 | KHM_CA14 | DQ013524 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA17 | KHM_CA17 | DQ013525 | None | | | | L10I, I13V, E35ED, M36I, R41K, L63C, H69K, L89M, L97I | CRF01_AE |
| NL_KHM_CA1 | KHM_CA1 | DQ013514 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA20 | KHM_CA20 | DQ013528 | None | | | | I13V, E35D, M36I, N37D, R41K, L63P, H69K, L89M | CRF01_AE |
| NL_KHM_CA21 | KHM_CA21 | DQ013529 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_CA22 | KHM_CA22 | DQ013530 | None | | | | L10I, I13V, M36I, R41K, L63T, H69K, K70R | CRF01_AE |
| NL_KHM_CA23 | KHM_CA23 | DQ013531 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_CA24 | KHM_CA24 | DQ013532 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89IM | CRF01_AE |
| NL_KHM_CA27 | KHM_CA27 | DQ013534 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA28 | KHM_CA28 | DQ013535 | None | | | | I13V, K14R, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA31 | KHM_CA31 | DQ013538 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA32 | KHM_CA32 | DQ013539 | None | | | | I13V, E35D, M36I, R41K, R57K, L63PS, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_CA35 | KHM_CA35 | DQ013542 | None | | | | I13V, E35D, M36I, R41K, H69K, L89I | CRF01_AE |
| NL_KHM_CA36 | KHM_CA36 | DQ013543 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_CA37 | KHM_CA37 | DQ013544 | None | | | | I13V, K20R, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_CA40 | KHM_CA40 | DQ013546 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA43 | KHM_CA43 | DQ013549 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, Q92K | CRF01_AE |
| NL_KHM_CA44 | KHM_CA44 | DQ013550 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA45 | KHM_CA45 | DQ013551 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA46 | KHM_CA46 | DQ013552 | None | | | | I13V, G16E, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA48 | KHM_CA48 | DQ013554 | None | | | | I13V, L24V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_CA49 | KHM_CA49 | DQ013555 | None | | | L33F | I13V, K14E, E35D, M36I, R41K, H69K, L89M, I93IF | CRF01_AE |
| NL_KHM_CA4 | KHM_CA4 | DQ013516 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA50 | KHM_CA50 | DQ013556 | None | | | | I13V, I15IV, E35D, M36I, R41K, L63FS, H69K, L89M | CRF01_AE |
| NL_KHM_CA52 | KHM_CA52 | DQ013558 | None | | | | I13V, G16E, K20I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA53 | KHM_CA53 | DQ013559 | None | | | | I13V, G16A, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_CA55 | KHM_CA55 | DQ013561 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| NL_KHM_CA56 | KHM_CA56 | DQ013562 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_CA57 | KHM_CA57 | DQ013563 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA58 | KHM_CA58 | DQ013564 | None | | | | I13V, E35D, M36I, N37K, R41N, H69K, L89M | CRF01_AE |
| NL_KHM_CA59 | KHM_CA59 | DQ013565 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA5 | KHM_CA5 | DQ013517 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA60 | KHM_CA60 | DQ013566 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA62 | KHM_CA62 | DQ013568 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CA63 | KHM_CA63 | DQ013569 | None | | | | L10I, I13V, M36I, R41K, L63T, H69K, L89LM | CRF01_AE |
| NL_KHM_CA8 | KHM_CA8 | DQ013519 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_CA9 | KHM_CA9 | DQ013520 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| NL_KHM_CD11 | KHM_CD11 | DQ013641 | None | | | | I13V, E35D, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
| NL_KHM_CD12 | KHM_CD12 | DQ013642 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, L63S, H69K, L89M | CRF01_AE |
| NL_KHM_CD13 | KHM_CD13 | DQ013643 | None | | | | I13V, E35D, M36I, R41K, K45KR, L63P, H69K, P79PH | CRF01_AE |
| NL_KHM_CD14 | KHM_CD14 | DQ013644 | None | | | L33F | I13V, K14R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| NL_KHM_CD16 | KHM_CD16 | DQ013646 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| NL_KHM_CD18 | KHM_CD18 | DQ013648 | None | | | | I13V, I15V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_CD1 | KHM_CD1 | DQ013631 | None | | | | I13V, K14R, I15V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CD20 | KHM_CD20 | DQ013650 | None | | | | I13V, K20I, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| NL_KHM_CD21 | KHM_CD21 | DQ013651 | None | | | | L10I, I13V, I15V, G16E, E35D, M36I, R41K, H69K, K70R, I72V, L89IM | CRF01_AE |
| NL_KHM_CD22 | KHM_CD22 | DQ013652 | None | | | | I13V, K20R, M36I, R41N, L63P, H69K, L89M, I93L | CRF01_AE |
| NL_KHM_CD2 | KHM_CD2 | DQ013632 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93IL, L97I | CRF01_AE |
| NL_KHM_CD3 | KHM_CD3 | DQ013633 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CD4 | KHM_CD4 | DQ013634 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_CD5 | KHM_CD5 | DQ013635 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_CD6 | KHM_CD6 | DQ013636 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_CD7 | KHM_CD7 | DQ013637 | None | | | V11I | L10I, I13V, K14R, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
| NL_KHM_CD8 | KHM_CD8 | DQ013638 | None | | | | I13V, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| NL_KHM_HM11 | KHM_HM11 | DQ013578 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM13 | KHM_HM13 | DQ013579 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_HM14 | KHM_HM14 | DQ013580 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM16 | KHM_HM16 | DQ013582 | None | | | | I13V, G16E, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM17 | KHM_HM17 | DQ013583 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_HM18 | KHM_HM18 | DQ013584 | None | | | | I13V, I15V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_HM19 | KHM_HM19 | DQ013585 | None | | | | I13V, G17A, E35D, M36I, R41K, K45R, R57K, H69K, L89M | CRF01_AE |
| NL_KHM_HM1 | KHM_HM1 | DQ013570 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_HM21 | KHM_HM21 | DQ013587 | None | | | | I13V, K20I, E35D, M36I, P39PS, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM22 | KHM_HM22 | DQ013588 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM23 | KHM_HM23 | DQ013589 | None | | | | I13V, L19W, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM25 | KHM_HM25 | DQ013591 | None | | | | T12P, I13V, L33V, M36I, H69K, L89M | CRF01_AE |
| NL_KHM_HM26 | KHM_HM26 | DQ013592 | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM27 | KHM_HM27 | DQ013593 | None | | | | I13V, E35D, M36I, R41K, L63IV, H69K, L89M | CRF01_AE |
| NL_KHM_HM29 | KHM_HM29 | DQ013594 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM32 | KHM_HM32 | DQ013596 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| NL_KHM_HM33 | KHM_HM33 | DQ013597 | None | | | | I13V, E35D, M36I, R41K, R57K, D60E, H69K, L89M | CRF01_AE |
| NL_KHM_HM34 | KHM_HM34 | DQ013598 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_HM35 | KHM_HM35 | DQ013599 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, V77I, L89M, I93L | CRF01_AE |
| NL_KHM_HM36 | KHM_HM36 | DQ013600 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_HM3 | KHM_HM3 | DQ013571 | None | | | | L10LI, I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_HM8 | KHM_HM8 | DQ013575 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_POP1 | KHM_POP1 | DQ013601 | None | | | | I13V, L33V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_POP2 | KHM_POP2 | DQ013602 | None | | | | I13V, G16E, E35D, M36I, R41K, D60E, I62V, L63M, I64L, H69K, L89M | CRF01_AE |
| NL_KHM_POP3 | KHM_POP3 | DQ013603 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_POP4 | KHM_POP4 | DQ013604 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_POP5 | KHM_POP5 | DQ013605 | None | | | | T12P, I13V, G16GE, E35D, M36I, R41K, L63H, H69K, K70Q, L89I | CRF01_AE |
| NL_KHM_POP6 | KHM_POP6 | DQ013606 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, H69K, I72T, L89M | CRF01_AE |
| NL_KHM_POP7 | KHM_POP7 | DQ013607 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_POP9 | KHM_POP9 | DQ013609 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS10 | KHM_SOS10 | DQ013619 | None | | | | I13V, E35D, M36I, R41K, Q61QE, H69K, L89M | CRF01_AE |
| NL_KHM_SOS11 | KHM_SOS11 | DQ013620 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS12 | KHM_SOS12 | DQ013621 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| NL_KHM_SOS13 | KHM_SOS13 | DQ013622 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| NL_KHM_SOS14 | KHM_SOS14 | DQ013623 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS15 | KHM_SOS15 | DQ013624 | None | | | | I13V, K20R, M36I, N37D, R41K, H69K, V82I, L89M | CRF01_AE |
| NL_KHM_SOS17 | KHM_SOS17 | DQ013625 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS19 | KHM_SOS19 | DQ013626 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS1 | KHM_SOS1 | DQ013610 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_SOS20 | KHM_SOS20 | DQ013627 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS21 | KHM_SOS21 | DQ013628 | None | | | | I13V, E35D, M36I, R41K, R57K, L63A, H69K, L89M | CRF01_AE |
| NL_KHM_SOS22 | KHM_SOS22 | DQ013629 | None | | | | I13V, L33V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| NL_KHM_SOS23 | KHM_SOS23 | DQ013630 | None | | | | I13V, E35D, M36I, R41K, K45R, L63S, H69K, L89M | CRF01_AE |
| NL_KHM_SOS2 | KHM_SOS2 | DQ013611 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS3 | KHM_SOS3 | DQ013612 | None | | | | I13V, K14R, G16E, M36I, N37D, R41K, H69K, L89M, I93L | CRF01_AE |
| NL_KHM_SOS4 | KHM_SOS4 | DQ013613 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NL_KHM_SOS5 | KHM_SOS5 | DQ013614 | None | | | | I13V, G16E, K20KR, E35D, M36I, R41K, L63C, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_SOS7 | KHM_SOS7 | DQ013616 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| NL_KHM_SOS8 | KHM_SOS8 | DQ013617 | None | | | | I13V, L33V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NL_KHM_SOS9 | KHM_SOS9 | DQ013618 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
Non-B Workgroup (2005) | UK1573 | UK1573 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TH_154 | TH_154 | AY605566 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| TH_189 | TH_189 | AY605594 | None | | | | I13V, I15V, E35D, M36I, R41K, L63S, H69K, V82I, L89M | CRF01_AE |
| TH_219 | TH_219 | AY605622 | None | | | | L10I, I13V, E35D, M36I, R41K, L63I, H69K, V82I, L89M | CRF01_AE |
| UK4327 | UK4327 | AY901218 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TK1007 | TK1007 | | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| | TK1007a | | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| TK1013 | TK1013 | | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| TK2011 | TK2011 | | None | | | | I13V, M36I, R41K, H69K, L89IM | CRF01_AE |
Punzi (2005) | CAR-173 | CAR-173 | AY626951 | None | | | V11VI | L10LI, I13V, K14IR, I15V, E35D, M36I, N37D, G49GA, R57K, L63LIPT, I64IM, H69K, L89M | CRF01_AE |
Saad (2005) | SM_02YE512 | 02YE512 | AY790008 | None | | | | I13V, K20R, E35D, M36I, N37K, R41I, G49R, R57K, L63P, H69K, K70R, I72V, L89M | CRF01_AE |
Tee (2005) | 04MYKL1816 | 04_1816 | AY904604 | None | | | | L10V, I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1420 | 03_1420 | AY904540 | None | | | | I13V, K20R, M36I, R41K, L63V, H69K, V82I, L89M | CRF01_AE |
| 03MYKL1315 | 03_1315 | AY904527 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, T91N | CRF01_AE |
| 03MYKL1316 | 03_1316 | AY904519 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| 04MYKLGun7073 | 04Gun7073 | AY904602 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 03MYKL1425 | 03_1425 | AY904526 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| 03MYKL1533 | 03_1533 | AY904592 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKLZai | 03_Zai | AY904539 | None | | | | I13V, E35D, H69K, T74S, L89M | CRF01_AE |
| 04MYKL1897 | 04_1897 | AY904609 | None | | | | I13V, E35D, M36I, R41K, L63P, H69T, K70R, A71V, I72V, V77I, I93L | CRF01_AE |
| 03MYKL1358 | 03_1358 | AY904534 | None | | | | I13V, E35D, M36I, R41K, H69K, V77I, L89M, T91N | CRF01_AE |
| 04MYKLBD9039 | 04BD9039 | AY904577 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 03MYKL1467 | 03_1467 | AY904544 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1397 | 03_1397 | AY904537 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M, T91N | CRF01_AE |
| 04MYKL1717 | 04_1717 | AY904579 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 04MYKL1646 | 04_1646 | AY904567 | None | | | | I13V, H69K, L89M, T91V, I93M | CRF01_AE |
| 04MYKLLYY0328 | 04LYY0328 | AY904576 | None | | | | I13V, K20R, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| 04MYKL1864 | 04_1864 | AY904613 | None | | | L10F | I13V, G16E, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| 04MYKLLKL6509 | 04LKL6509 | AY904573 | None | | | | I13V, K20R, M36I, R41K, L63M, H69K, L89M | CRF01_AE |
| 03MYKL1430 | 03_1430 | AY904541 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1503 | 03_1503 | AY904548 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1504 | 03_1504 | AY904551 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 03MYKL1328 | 03_1328 | AY904529 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1362 | 03_1362 | AY904535 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, L63V, H69K, K70R, L89M | CRF01_AE |
| 04MYKL1798 | 04_1798 | AY904598 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 04MYKL1799 | 04_1799 | AY904591 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, H69K, K70R, L89M | CRF01_AE |
| 04MYKLLSW3950 | 04LSW3950 | AY904607 | None | | | | T12A, I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| 04MYKL1610 | 04_1610 | AY904563 | None | | | | L10I, I13V, G16E, K20R, E35D, M36I, L38F, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| 03MYKL1546 | 03_1546 | AY904557 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 04MYKL1611 | 04_1611 | AY904564 | None | | | | I13V, K14R, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1547 | 03_1547 | AY904558 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| 04MYKL1612 | 04_1612 | AY904565 | None | | | L33F | I13V, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| 04MYKL1658 | 04_1658 | AY904594 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| 04MYKL1837 | 04_1837 | AY904605 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| 04MYKL1768 | 04_1768 | AY904588 | None | | | | L10V, I13V, G17E, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| 03MYKL1511 | 03_1511 | AY904549 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 04MYKL1769 | 04_1769 | AY904589 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| 03MYKL1335 | 03_1335 | AY904520 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1336 | 03_1336 | AY904521 | None | | | | L10I, I13V, T26S, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| 03MYKL1480 | 03_1480 | AY904547 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| 03MYKLTW9787 | 03TW9787 | AY904574 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 03MYKL1555 | 03_1555 | AY904560 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 03MYKL1590 | 03_1590 | AY904561 | None | | | | I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| 04MYKL1732 | 04_1732 | AY904582 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 04MYKL1734 | 04_1734 | AY904584 | None | | | | I13V, K14R, I15V, E35D, M36I, R41K, Q61D, H69K, L89M | CRF01_AE |
| 04MYKLTBK7985 | 04TBK7985 | AY904610 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 04MYKL1736 | 04_1736 | AY904585 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 04MYKL1663 | 04_1663 | AY904569 | None | | | L33F | L10I, I13V, M36I, R41K, I62V, H69K, K70R, L89M | CRF01_AE |
| 04MYKL1770 | 04_1770 | AY904596 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M, I93L | CRF01_AE |
| 04MYKLJam1052 | 04Jam1052 | AY904575 | None | | | | I13V, G16E, M36I, H69K, K70R, L89M | CRF01_AE |
| 04MYKLBD6117 | 04BD6117 | AY904612 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 04MYKL1668 | 04_1668 | AY904570 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 04MYKL1880 | 04_1880 | AY904608 | None | | | I47M | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| 04MYKL1881 | 04_1881 | AY904614 | None | | | | I13V, E35D, M36I, R41K, K43N, H69K, L89M | CRF01_AE |
| 03MYKL1520 | 03_1520 | AY904552 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 03MYKL1521 | 03_1521 | AY904553 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| 03MYKL1419 | 03_1419 | AY904525 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, G94C | CRF01_AE |
| 04MYKLAmp4165 | 04Amp4165 | AY904606 | None | | | | I13V, E35D, M36I, R41K, K55R, H69K, K70R, I72V, L89M | CRF01_AE |
| 03MYKL1349 | 03_1349 | AY904530 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 03MYKL1383 | 03_1383 | AY904536 | None | | | | I13V, K14R, K20R, E35D, M36I, R41K, R57K, H69K, L89M, T91N | CRF01_AE |
| 04MYKL1708 | 04_1708 | AY904578 | None | | | | I13V, K20R, M36I, H69K, L89M | CRF01_AE |
| 04MYKL1815 | 04_1815 | AY904603 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Tee (2005) | MYIDUB11 | 04MYIDUB11 | DQ018354 | None | | | | I13V, E35D, M36I, R41K, D60E, L63I, C67CW, H69K, L89M | CRF01_AE |
Tovanabutra (2005) | 00US_MSC1164 | 00US_1164 | AY444804 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 98US_MSC1120 | 98US_1120 | AY444803 | None | | | | I13V, I15V, K20R, E35D, M36I, R41K, H69K, P81L, L89M | CRF01_AE |
| 98US_MSC2008 | 98US_2008 | AY444805 | None | | | | I13V, E35D, M36I, R41K, K45R, D60E, H69K, L89M | CRF01_AE |
Vazquez de Parga (2005) | RUJA42 | RUJA42 | EU345798 | None | | | | L10I, I13V, G16E, E35D, M36I, P39T, R41K, H69K, K70KR, L89M | CRF01_AE |
Weber (2005) | F99921 | F99921 | AY714451 | None | | | | L10I, I13V, K20KR, E35N, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
Babic (2006) | DB_SI3493-03 | SI3493-03 | AJ971102 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, L63P, H69K, L89M, T91I | CRF01_AE |
Huang (2006) | FJ051 | FJ051 | DQ859178 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FJ053 | FJ053 | DQ859179 | None | | | | I13V, M36I, N37D, R41K, I66V, H69K, L89M | CRF01_AE |
| FJ054 | FJ054 | DQ859180 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
Jayaraman (2006) | 1-00-0088 | 1-00-0088 | | None | | | | Q2L, I13V, E35D, M36I, R41K, H69K, L89M, L90F | CRF01_AE |
| 1-00-0098 | 1-00-0098 | | None | | | | I13V, I15L, L19Q, K20I, E21T, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 2-01-0169 | 2-01-0169 | | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 5-00-0091a | 5-00-0091a | | None | | | | I13V, L19Q, E35D, M36I, R41K, R57K, L63P, H69K, K70R, L89M | CRF01_AE |
Koizumi (2006) | YK_04CM007 | YK_04CM007 | DQ461826 | None | | | | I13V, E35N, M36I, N37D, R41K, L63P, H69K, L89M | CRF01_AE |
| YK_04CM072 | YK_04CM072 | DQ461860 | None | | | | I13V, E35N, M36L, N37D, R41K, H69K, L89M | CRF01_AE |
Laurent (2006) | CK22-50 | 03CM2-50 | AM279458 | None | | | | I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Marechal (2006) | JF_006 | JF_006 | DQ443628 | None | | | | I13V, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| JF_033 | JF_033 | DQ443648 | None | | | L23LI | I13V, I15V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| JF_058 | JF_058 | DQ443664 | None | | | | L10IV, I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| JF_061 | JF_061 | DQ443666 | None | | | | I13V, K20KR, E35D, M36I, N37D, H69K, A71AV, I72IV, L89M | CRF01_AE |
| JF_062 | JF_062 | DQ443667 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| JF_068 | JF_068 | DQ443672 | None | | | | I13V, L19I, E35D, M36I, R41RK, H69K, L89M | CRF01_AE |
| JF_141 | JF_141 | DQ443711 | None | | | | I13V, G16E, K20I, E35D, M36I, R41K, D60E, I62V, I64M, H69K, L89M | CRF01_AE |
Ndongmo (2006) | CM224 | CBN_CM224 | DQ394170 | None | | | | I13V, E35D, M36I, R41K, R57K, L63S, H69K, L89M, I93L | CRF01_AE |
| CM384 | CBN_CM384 | DQ394176 | None | | | | I13V, E35D, M36I, N37D, R41K, K43R, L63S, H69K, I72V, L89M, I93L | CRF01_AE |
Niama (2006) | CHU12 | CHU12 | FM164903 | None | | | | L10V, I13V, I15V, G16A, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
Njai (2006) | MP582 | 97CM.582 | AM279370 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| MP812 | 97CM.812 | AM279371 | None | | | | I13V, I15V, E35D, M36I, N37E, R41K, H69K, L89M | CRF01_AE |
Razafindratsimandresy (2006) | RR_MAD-MO023 | MAD-MO023 | DQ345022 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Tee (2006) | MYKL1351 | 03MYKL1351 | AY960924 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | 04MYKL1351.1 | AY960960 | None | | | | I13V, K20R, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| MYKL1352 | 03MYKL1352 | AY960925 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MYKL1356 | 03MYKL1356 | AY960926 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | 03MYKL1356.1 | AY960966 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| MYKL1392 | 03MYKL1392 | AY960930 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| | 03MYKL1392.1 | AY960961 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| MYKL1395 | 03MYKL1395 | AY960931 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MYKL1399 | 03MYKL1399 | AY960932 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| | 04MYKL1399.1 | AY960967 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| | 04MYKL1399.2 | AY960968 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| MYKL1402 | 03MYKL1402 | AY960933 | None | | | | I13V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| | 04MYKL1402.1 | AY960962 | None | | | | I13V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| | 04MYKL1402.2 | AY960963 | None | | | | I13V, K20I, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| MYKL1415 | 03MYKL1415 | AY960935 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| MYKL1439 | 03MYKL1439 | AY960936 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MYKL1450 | 03MYKL1450 | AY960937 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| | 04MYKL1450.1 | AY960964 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, G52A, R57K, H69K, K70R, L89M | CRF01_AE |
| MYKL1477 | 03MYKL1477 | AY960938 | None | | | | I13V, E35N, M36I, R41K, Y59D, H69K, I72V, T74S, L89M, I93L | CRF01_AE |
| MYKL1482 | 03MYKL1482 | AY960939 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| MYKL1509 | 03MYKL1509 | AY960940 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | 04MYKL1509.1 | AY960969 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| MYKL1518 | 03MYKL1518 | AY960942 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| | 03MYKL1518.1 | AY960970 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| MYKL1531 | 03MYKL1531 | AY960943 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| | 04MYKL1531.1 | AY960971 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| | 04MYKL1531.2 | AY960972 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| | 04MYKL1531.3 | AY960973 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| MYKL1570 | 03MYKL1570 | AY960944 | None | | | | I13V, M36I, N37D, R41K, H69K, V82I, L89M | CRF01_AE |
| MYKL1652 | 04MYKL1652 | AY960948 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF01_AE |
| MYKL1664 | 04MYKL1664 | AY960950 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| MYKL1870 | 04MYKL1870 | AY960957 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Vessiere (2006) | AV_M3777N | AV_M3777N | DQ297262 | None | | | | I13V, I15V, E35N, M36I, N37D, R41K, K45KR, H69K, L89M | CRF01_AE |
| AV_M4160N | AV_M4160N | DQ297194 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF01_AE |
| AV_M9443N | AV_M9443N | DQ297221 | None | | | | I13V, K14KR, K20KI, E35DN, M36I, N37D, R41K, I62V, L63P, H69K, L89M | CRF01_AE |
Vidal (2006) | NV_KS035 | 02.KS035 | AM040993 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, K45R, L63T, H69K, L89M | CRF01_AE |
| NV_KS049 | 02.KS049 | AM041037 | None | | | | I13V, K14R, E35D, M36I, R41K, L63P, H69K, V77I, L89M | CRF01_AE |
Watanaveeradej (2006) | 99TH_C1080 | 99_C1080 | AY945712 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| 00TH_C2101 | 00_C2101 | AY945716 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 00TH_C2257 | 00_C2257 | AY945717 | None | | | | I13V, E35D, M36I, R41K, I62V, I64V, H69K, T74S, L89M | CRF01_AE |
| 99TH_C2405 | 99_C2405 | AY945718 | None | | | | I13V, G17E, K20R, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 01TH_C2570 | 01_C2570 | AY945719 | None | | | | I13V, E35D, M36I, N37S, R41K, L63S, H69K, L89M | CRF01_AE |
| 01TH_C3256 | 01_C3256 | AY945720 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 00TH_C3347 | 00_C3347 | AY945721 | None | | | | I13V, E35D, M36I, R41K, I62V, L63P, H69K, K70R, L89M | CRF01_AE |
| 00TH_C4151 | 00_C4151 | AY945724 | None | | | | I13V, I15V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 99TH_C4460 | 99_C4460 | AY945726 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 99TH_R1149 | 99_R1149 | AY945727 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 98TH_R1166 | 98_R1166 | AY945728 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 01TH_R2184 | 01_R2184 | AY945730 | None | | | | L10V, I13V, E35D, M36I, R41K, D60E, L63P, H69K, L89M | CRF01_AE |
| 99TH_R3006 | 99_R3006 | AY945731 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M, F99L | CRF01_AE |
| 99TH_R3265 | 99_R3265 | AY945732 | None | | | | I13V, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| 00TH_C2254_BE | 00_2254_BE | AY945733 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M, T91I | CRF01_AE |
Brumme (2007) | 1264 | PR_1264 | EF368574 | None | | | | I13V, L19I, K20I, E35D, M36I, R41K, H69K, I72IV, L89M | CRF01_AE |
| 1519 | PRRT_1519 | EF368829 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 1776 | PRRT_1776 | EF369086 | None | | | | I13V, M36I, R41K, L63P, H69K, V82I, L89M | CRF01_AE |
Church (2007) | 403-123871S | 403 | EF612020 | None | | | | L10I, I13V, E35D, M36I, R41K, H69Q, L89M | CRF01_AE |
| 522-128205c | 522 | EF612056 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, I64L, H69K, K70KR, L89M | CRF01_AE |
| 576-131187D | 576 | EF612069 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 850-145864u | 850 | EF612168 | None | | | | I13V, I15V, G16E, E35D, M36I, R41K, R57K, D60E, H69K, L89M | CRF01_AE |
Galluzzo (2007) | 23970 | RW_23970 | JQ220013 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 24260 | RW_24260 | JQ220021 | None | | | | I13V, E35D, M36I, N37D, R41K, R57K, H69K, V77VI, L89M | CRF01_AE |
| 24270 | RW_24270 | JQ220053 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Gatanaga (2007) | A03-201010-1 | A03-201010-1 | AB640063 | None | | | | I13V, E35D, M36I, N37NS, R41K, R57K, H69K, I85IS, R87R*, L89M | CRF01_AE |
| A04-201019-1 | A04-201019-1 | AB640074 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| B03-511003-1 | B03-511003-1 | AB640077 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C03-51110014-1 | C03-51110014-1 | AB640114 | None | | | | I13V, M36I, R41K, L63A, H69K, L89M | CRF01_AE |
| C03-51110040-1 | C03-51110040-1 | AB640140 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, T91V | CRF01_AE |
| C03-51110049-1 | C03-51110049-1 | AB640149 | None | | | | I13V, E35D, N37A, R41K, H69K, L89M | CRF01_AE |
| C03-51110050-1 | C03-51110050-1 | AB640150 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C03-51110054-1 | C03-51110054-1 | AB640154 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| C03-51110063-1 | C03-51110063-1 | AB640163 | None | | | | L10I, I13V, G16A, E35D, M36I, R41K, L63A, H69K, L89M, I93V | CRF01_AE |
| C04-51110123-1 | C04-51110123-1 | AB640223 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, I62V, L63LP, H69K, K70R, L89M, L97F | CRF01_AE |
| C04-51110132-1 | C04-51110132-1 | AB640232 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, K70R, I72V, L89M | CRF01_AE |
| C04-51110160-1 | C04-51110160-1 | AB640260 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C04-51110166-1 | C04-51110166-1 | AB640266 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C04-51110192-1 | C04-51110192-1 | AB640292 | None | | | | I13V, K20I, E35D, M36I, R41K, L63V, I64M, H69K, L89M | CRF01_AE |
| C04-51110220-1 | C04-51110220-1 | AB640319 | None | | | L33F | L10I, I13V, K14R, I15L, E35D, M36IV, R41K, K55R, L63P, H69K, K70R, L89M, I93V, F99L | CRF01_AE |
| C04-51110224-1 | C04-51110224-1 | AB640323 | None | | | | L10LI, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C03-5555-4882-1 | C03-5555-4882-1 | AB640334 | None | | | | I13V, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| C03-5555-5089-1 | C03-5555-5089-1 | AB640343 | None | | | | T12S, I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| C03-5555-5383-1 | C03-5555-5383-1 | AB640374 | None | | | | I13V, G16E, E35D, M36I, R41K, K55R, H69K, K70R, I72IV, L89M | CRF01_AE |
| C03-5555-5432-1 | C03-5555-5432-1 | AB640376 | None | | | | L10LI, I13V, E21ELQV, M36I, R41K, K43KR, L63AS, H69K, L89M | CRF01_AE |
| C03-5555-5472-1 | C03-5555-5472-1 | AB640382 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C03-5555-5546-1 | C03-5555-5546-1 | AB640386 | None | | | | I13V, K20I, E35D, M36I, R41K, R57K, H69K, K70R, T74S, L89M | CRF01_AE |
| C04-5555-5806-1 | C04-5555-5806-1 | AB640400 | None | | | | L10I, I13V, G17E, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF01_AE |
| C04-5555-5846-1 | C04-5555-5846-1 | AB640402 | None | | | | I13V, K14R, I15IV, K20KI, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C04-5555-5973-1 | C04-5555-5973-1 | AB640409 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C04-5555-6038-1 | C04-5555-6038-1 | AB640416 | None | | | | I13V, I15IV, G17E, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| C04-5555-6124-1 | C04-5555-6124-1 | AB640430 | None | | | | I13V, G16E, M36I, R41RK, G49GE, D60E, L63LP, E65EK, H69K, K70R, L89M, I93L | CRF01_AE |
| C04-5555-6127-1 | C04-5555-6127-1 | AB640431 | None | | | | L10LV, I13V, I15IV, G16GE, E35D, M36I, N37ND, R41K, H69K, K70R, I72IT, L89M | CRF01_AE |
| C04-5555-6196-1 | C04-5555-6196-1 | AB640439 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| C04-5555-6298-1 | C04-5555-6298-1 | AB640449 | None | | | | I13V, K20KIM, E35D, M36I, R41K, R57RK, H69K, V82I, L89M | CRF01_AE |
| C04-5555-6320-1 | C04-5555-6320-1 | AB640453 | None | | | | L10LV, I13V, E35D, M36I, R41K, R57RK, I62IV, H69K, L89M | CRF01_AE |
| C04-5555-6363-1 | C04-5555-6363-1 | AB640457 | None | | | | L10I, I13V, K14KN, G16E, K20KR, E35D, M36I, R41K, L63NT, H69K, K70R, I72T, L89M, F99L | CRF01_AE |
| C04-5555-6372-1 | C04-5555-6372-1 | AB640458 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82VI, L89M | CRF01_AE |
| C03-2067701-1 | C03-2067701-1 | AB640465 | None | | | | I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| C03-20671086-1 | C03-20671086-1 | AB640466 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, C67Y, H69K, L89M | CRF01_AE |
| C03-2066162-1 | C03-2066162-1 | AB640468 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, L63P, H69K, L89M, F99L | CRF01_AE |
| C03-2066173-1 | C03-2066173-1 | AB640470 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| C03-2066176-1 | C03-2066176-1 | AB640472 | None | | | | L10LI, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| C03-2066177-1 | C03-2066177-1 | AB640473 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C04-2066199-1 | C04-2066199-1 | AB640475 | None | | | | I13V, D25DN, E35D, M36I, P39T, R41K, I62V, L63P, H69K, L89M | CRF01_AE |
| C04-2066202-1 | C04-2066202-1 | AB640478 | None | | | | T12P, I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| C04-2066206-1 | C04-2066206-1 | AB640482 | None | | | | I13V, E34K, M36I, R41K, L63S, H69K, V82I, L89M | CRF01_AE |
| C04-2066210-1 | C04-2066210-1 | AB640483 | None | | | | L10I, I13V, L33V, E35D, M36I, L63P, H69K, L89M, N98I | CRF01_AE |
| C04-2066216-1 | C04-2066216-1 | AB640487 | None | | | | I13V, K20R, E34K, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C04-2066226-1 | C04-2066226-1 | AB640492 | None | | | | I13V, E34K, E35D, M36I, R41K, Q61H, H69K, K70R, I72V, G78R, L89M | CRF01_AE |
| C04-2066229-1 | C04-2066229-1 | AB640495 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D04-2031-5-1 | D04-2031-5-1 | AB640506 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| H04-201116-1 | H04-201116-1 | AB640578 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Hai-Long (2007) | Fj055 | Fj055 | EF036527 | None | | | | R8Q, I13V, E35D, M36I, R41K, K55R, L63P, H69K, I72V, L89M | CRF01_AE |
| Fj052 | Fj052 | EF036528 | None | | | | P9L, I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| Fj056 | Fj056 | EF036529 | None | | | | I13V, G16E, L19I, E35D, M36I, R41K, H69K, L89M, F99S | CRF01_AE |
| Fj057 | Fj057 | EF036530 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Fj062 | Fj062 | EF036531 | None | | | | I13V, E35D, M36I, R41K, I64V, H69K, L89M | CRF01_AE |
| Fj063 | Fj063 | EF036532 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| Fj064 | Fj064 | EF036533 | None | | | | I13V, E35D, M36I, R41K, I64V, H69K, L89M | CRF01_AE |
Han (2007) | LN27 | 02CNLN27 | EF122518 | None | | | | I13V, M36I, N37D, H69K, K70R, V82I, L89M | CRF01_AE |
| LN33 | 02CNLN33 | EF122520 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93V | CRF01_AE |
| LN36 | 02CNLN36 | EF122521 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN40 | 02CNLN40 | EF122524 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M, I93L | CRF01_AE |
| LN52 | 03CNLN52 | EF122532 | None | | | | I13V, G16E, L19V, E35D, M36I, R41K, H69K, K70R, L89M, I93L | CRF01_AE |
| LN62 | 04CNLN62 | EF122535 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| LN64 | 04CNLN64 | EF122536 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, L89M, I93L | CRF01_AE |
| LN77 | 04CNLN77 | EF122542 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| LN78 | 04CNLN78 | EF122543 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN39 | 02CNLN39 | EF122592 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
Lin (2007) | 4V62 | 4V62 | EF078232 | None | | | V32G | I13V, K14*, L24P, D25P, E35D, M36I, R41K, H69I, L89M | CRF01_AE |
| 4V93 | 4V93 | EF078241 | None | | | | L10H, I13V, K20I, E35D, M36I, R41K, I64M, H69K, I72M, L89M | CRF01_AE |
| 4v347 | 4v347 | EF078264 | None | | | | I13V, I15V, G16E, K20I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 4V354 | 4V354 | EF078277 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Liu (2007) | fj01 | fj01 | EF432660 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| fj02 | fj02 | EF432661 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj07 | fj07 | EF432662 | None | | | V11I | I13V, G16E, K20I, M36I, R41K, I64V, H69K, L89I, Q92R | CRF01_AE |
| fj08 | fj08 | EF432663 | None | | | | I13V, M36I, R41K, H69K, L89M, F99I | CRF01_AE |
| fj09 | fj09 | EF432664 | None | | | | I13V, I15V, G16E, K20I, E35D, M36I, R41K, H69K, I72V, G73D, L89M, Q92K | CRF01_AE |
| fj11 | fj11 | EF432665 | None | | | | I13V, G16E, L19I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj13 | fj13 | EF432666 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| fj15 | fj15 | EF432667 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj16 | fj16 | EF432668 | None | | | | I13V, G16E, L19I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj21 | fj21 | EF432669 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj24 | fj24 | EF432670 | None | | | | I13V, E35D, M36I, P39S, R41K, H69K, L89M | CRF01_AE |
| fj25 | fj25 | EF432671 | None | | | | I13V, K20R, M36I, R41K, H69K, N83S, L89M, I93L | CRF01_AE |
| fj26 | fj26 | EF432672 | None | | | L33F | I13V, E35D, M36I, R41K, K55R, L63P, H69K, I72V, L89M, L97F, N98K | CRF01_AE |
| fj31 | fj31 | EF432673 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj39 | fj39 | EF432674 | None | | | | I13V, E35D, M36I, R41K, K55R, L63P, H69K, L89M, I93L | CRF01_AE |
| fj40 | fj40 | EF432675 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj43 | fj43 | EF432676 | None | | | | I13V, G16A, T31P, E35D, M36I, R41K, K45Q, H69K, T80P, N83T, L89M, T91I | CRF01_AE |
| fj44 | fj44 | EF432677 | None | | | L33F | I13V, M36I, R41K, L63I, H69K, V77I, L89M, I93L | CRF01_AE |
| fj46 | fj46 | EF432679 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj47 | fj47 | EF432680 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj48 | fj48 | EF432681 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj50 | fj50 | EF432683 | None | | | | I13V, E35D, M36I, R41K, K55R, H69K, L89M | CRF01_AE |
| fj51 | fj51 | EF432684 | None | | | | L10V, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| fj55 | fj55 | EF432687 | None | | | | I13V, E35D, M36I, R41K, K55R, L63P, H69K, I72V, L89M | CRF01_AE |
| fj60 | fj60 | EF432690 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| fj61 | fj61 | EF432691 | None | | | | L10I, I13V, E35D, M36I, R41K, H69Q, L89M | CRF01_AE |
| fj66 | fj66 | EF432695 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj67 | fj67 | EF432696 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj72 | fj72 | EF432697 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj74 | fj74 | EF432698 | None | | | | I13V, M36I, R41K, L63P, H69K, K70R, T74S, L89M, I93L | CRF01_AE |
| fj76 | fj76 | EF432700 | None | | | | I13V, M36I, R41K, H69R, L89M, I93L | CRF01_AE |
| fj77 | fj77 | EF432701 | None | | | | I13V, E35D, M36I, R41K, R57K, H69R, L89M | CRF01_AE |
| fj78 | fj78 | EF432702 | None | | | | I13V, K14R, K20I, E21K, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| fj81 | fj81 | EF432705 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, R57K, C67Y, H69K, K70R, L89M | CRF01_AE |
| fj82 | fj82 | EF432706 | None | | | | I13V, M36I, R41K, K55R, L63P, H69K, L89M | CRF01_AE |
| fj88 | fj88 | EF432707 | None | | | | I13V, E35D, M36I, R41K, K55R, L63P, H69K, I72V, V77I | CRF01_AE |
| fj91 | fj91 | EF432708 | None | | | | L10I, I13V, Q18H, L33V, E35D, M36I, R41K, H69S, L89M | CRF01_AE |
| fj94 | fj94 | EF432710 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj96 | fj96 | EF432711 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L | CRF01_AE |
| fj12 | fj12 | EF432714 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, L89M, F99L | CRF01_AE |
| fj57 | fj57 | EF432715 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| fj35 | fj35 | EF432718 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| fj10 | fj10 | EF432719 | None | | | | L10V, I13V, M36I, R41K, H69K, L89I | CRF01_AE |
| fj14 | fj14 | EF432720 | None | | | | I13V, M36I, R41K, D60E, H69K, K70R, L89M | CRF01_AE |
| fj30 | fj30 | EF432721 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| fj33 | fj33 | EF432722 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj17 | fj17 | EF432723 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| fj22 | fj22 | EF432724 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| fj03 | fj03 | EF432725 | None | | | L33F | I13V, K14R, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
Razafindratsimandresy (2007) | 2 | 2HIV-SEY | EF143494 | None | | | | I13V, L19I, E35D, M36I, R41K, R57K, I62V, I64L, H69K, V82I, L89M | CRF01_AE |
| 32 | 32HIV-SEY | EF143523 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Vicenti (2007) | 5513 | 74574R | EF376557 | None | | | | I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| 3076 | 36442R | EF376559 | None | | | | I13V, E35D, M36I, R41K, R57RK, Q58QK, H69K, L89M | CRF01_AE |
von Wyl (2007) | 104 | 5192708 | EF449880 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 46 | 702284 | EF449904 | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, L89M, Q92K | CRF01_AE |
| 141 | 1461974 | EF449960 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 31 | 5808332 | EF449989 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 156 | 5870795 | EF450004 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| | 5234204 | EF449910 | None | | | | L10V, I13V, G16E, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
Warachit (2007) | CU-98-26 | CU-98-26 | EF192591 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Zhong (2007) | D0003 | 05CN_003 | EF199551 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D0004 | 05CN_004 | EF199552 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| D0007 | 05CN_007 | EF199555 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| D0022 | 05CN_022 | EF199565 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D0028 | 05CN_028 | EF199570 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D0038 | 05CN_038 | EF199575 | None | | | | T12P, I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| D0045 | 05CN_045 | EF199578 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| D0046 | 05CN_046 | EF199579 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D0049 | 05CN_049 | EF199582 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D0059 | 05CN_059 | EF199590 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| D0060 | 05CN_060 | EF199591 | None | | | | T12A, I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| D0062 | 05CN_062 | EF199593 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D0084 | 05CN_084 | EF199612 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| D0089 | 05CN_089 | EF199617 | None | | | | I13V, K14R, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| D0095 | 05CN_095 | EF199620 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
Bao (2008) | YUN01-02 | YUN01-02 | AM886179 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| YUN01-22 | YUN01-22 | AM886198 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| YUN01-20 | YUN01-20 | AM886196 | None | | | M46MT | T4TN, I13V, E35D, M36I, R41K, H69K, I72M, L89M | CRF01_AE |
| YUN01-37 | YUN01-37 | AM886213 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| YUN01-25 | YUN01-25 | AM886201 | None | | | L33F | V11A, I13V, M36I, N37D, I62V, H69K, L89M, I93L | CRF01_AE |
| YUN01-10 | YUN01-10 | AM886186 | None | | | | I13V, E35ED, M36I, R41K, H69K, L89M | CRF01_AE |
| YUN01-27 | YUN01-27 | AM886203 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| YUN01-41 | YUN01-41 | AM886217 | None | | | L33LF | L10I, I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| YUN01-29 | YUN01-29 | AM886205 | None | | | | I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| YUN01-09 | YUN01-09 | AM886185 | None | | | L33LIV | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| YUN01-08 | YUN01-08 | AM886184 | None | | | L33I | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| YUN01-26 | YUN01-26 | AM886202 | None | | | | I13V, E35D, M36I, R41K, Q61E, L63S, H69K, L89M | CRF01_AE |
| YUN01-16 | YUN01-16 | AM886192 | None | | | L33F | I13V, M36I, R41K, L63P, H69K, K70R, L89M, I93V | CRF01_AE |
| YUN01-11 | YUN01-11 | AM886187 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| YUN01-03 | YUN01-03 | AM886180 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| YUN01-21 | YUN01-21 | AM886197 | None | | | | I13V, I15V, E35D, M36I, R41K, K43KR, H69K, L89M | CRF01_AE |
| YUN01-43 | YUN01-43 | AM886218 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M, Q92K | CRF01_AE |
| YUN01-01 | YUN01-01 | AM886178 | None | | | | L5F, L10V, T12TP, I13V, G17E, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF01_AE |
| YUN01-45 | YUN01-45 | AM886220 | None | | | | L10I, T12I, I13V, G16E, E35D, M36I, R41K, L63M, H69K, L89M | CRF01_AE |
Chang (2008) | TW282 | TW282 | DQ640279 | None | | | | I13V, G17E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW3638 | TW3638 | DQ640280 | None | | | | I13V, E35D, M36ILV, R41K, I62V, H69K, K70R, L89M | CRF01_AE |
| TW4794 | TW4794 | DQ640281 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| TW3305 | TW3305 | DQ640284 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW1192 | TW1192 | DQ643008 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| TW10433 | TW10433 | DQ646516 | None | | | | I13V, M36I, R41K, H69K, N83H, L89M | CRF01_AE |
| TW6457 | TW6457 | DQ666220 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, K70R, L89M | CRF01_AE |
| TW621 | TW621 | EU164862 | None | | | | I13V, E35D, M36I, R41K, Q61QE, H69K, K70KR, L89M | CRF01_AE |
| TW10065 | TW10065 | EU164867 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99FI | CRF01_AE |
| TW3374 | TW3374 | EU164871 | None | | | | I13V, E35D, M36I, R41K, H69K, V82VI, L89M | CRF01_AE |
| TW5112 | TW5112 | EU164906 | None | | | L33F | I13V, M36I, N37S, R41K, H69K, L89M, I93V | CRF01_AE |
| TW11250 | TW11250 | EU164923 | None | | | | I13V, E35D, M36I, R41K, Q58QR, L63S, H69K, K70R, L89I | CRF01_AE |
| TW0051a | TW0051a | | None | | | | Q2QLPR, L5F, P9T, L10P, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0103a | TW0103a | | None | | | | I13V, K20R, M36I, R41K, K55KN, L63P, H69K, L89M, I93L | CRF01_AE |
| TW0219a | TW0219a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0233a | TW0233a | | None | | | | Q2P, I13V, E35D, M36I, L38F, R41K, L63C, H69K, L89M | CRF01_AE |
| TW0242a | TW0242a | | None | | | | I13V, I15V, K20KR, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0253a | TW0253a | | None | | | | I13V, I15V, L19I, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0292a | TW0292a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0301a | TW0301a | | None | | | | I13V, K20I, E35D, M36I, R41K, I62V, H69K, K70R, T74S, V77VI, L89M | CRF01_AE |
| TW0312a | TW0312a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0319a | TW0319a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0347a | TW0347a | | None | | | | I13V, K20R, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| TW0348a | TW0348a | | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0378a | TW0378a | | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, K43KR, K45R, L63P, H69K, L89IM, I93L | CRF01_AE |
| TW3302a | TW3302a | | None | | | | L5F, R8G, I13V, E35D, M36I, R41K, K43KN, L63LHPR, H69K, L89M | CRF01_AE |
| TW3624a | TW3624a | | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| TW8431a | TW8431a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW9241a | TW9241a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW10063a | TW10063a | | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| TW10277a | TW10277a | | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L | CRF01_AE |
| TW10386a | TW10386a | | None | | | | L10I, I13V, E35D, M36I, R41K, L63V, L89M | CRF01_AE |
| TW10405a | TW10405a | | None | | | | L10I, I13V, E35D, M36I, R41K, L63V, L89M | CRF01_AE |
| TW10446a | TW10446a | | None | | | T74TAPS | I13V, I15V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| TW10454a | TW10454a | | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| TW9792a | TW9792a | | None | | | | I13V, I15V, M36I, R41K, H69K, L89M | CRF01_AE |
| TW10566a | TW10566a | | None | | | | I13V, I15V, E35D, M36I, R41K, L63LHPR, H69K, L89M, T91V, I93L | CRF01_AE |
| TW6890a | TW6890a | | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| TW7823a | TW7823a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW0602a | TW0602a | | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| TW2245a | TW2245a | | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| TW3187a | TW3187a | | None | | | | L5S, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW3210a | TW3210a | | None | | | L33F | I13V, K20R, M36I, R41K, H69K, L89M, I93V | CRF01_AE |
| TW4088a | TW4088a | | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| TW7513a | TW7513a | | None | | | | L10P, I13V, K20I, D25V, E35D, M36I, R41K, K43S, L63P, H69K, I72V, L89M, T96TP | CRF01_AE |
| TW7583a | TW7583a | | None | | | | I13V, E35D, M36I, N37D, L38F, R41K, R57RCGS, H69K, K70R, L89M | CRF01_AE |
| TW9199a | TW9199a | | None | | | L33F | I13V, G17E, M36I, R41K, R57K, H69Q, I72L, L89M | CRF01_AE |
| TW0350b | TW0350b | | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW10522a | TW10522a | | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| TW10541a | TW10541a | | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| TW11446a | TW11446a | | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW11544a | TW11544a | | None | | | | W6G, I13V, G16E, K20R, E35D, M36I, L38C, R41K, H69K, L89M | CRF01_AE |
| TW2444a | TW2444a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW3802b | TW3802b | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW4530a | TW4530a | | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| TW5385a | TW5385a | | None | | | | I13V, E35D, M36I, R41K, H69K, I72ILV, L89M | CRF01_AE |
| TW5407a | TW5407a | | None | | | | I13V, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| TW7700a | TW7700a | | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, D60E, H69K, L89M, I93L | CRF01_AE |
| TW10012a | TW10012a | | None | | | | I13V, E35D, M36I, R41K, L63S, H69K, K70R, L89I | CRF01_AE |
| TW10776a | TW10776a | | None | | | | I13V, I15V, G16E, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| TW10943a | TW10943a | | None | | | | I13V, K20R, E35D, M36I, R41K, R57RK, H69K, I72IV, V77VI, L89M, L97I | CRF01_AE |
| TW5759a | TW5759a | | None | | | | I13V, K14R, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| TW7290a | TW7290a | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TW9001a | TW9001a | | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
Church (2008) | 362363H | 362363H | EU380730 | None | | | | I13V, E35D, M36I, N37NS, R57K, H69K, L89IM | CRF01_AE |
| 326163-M | 326163-M | EU380732 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 400196E | 400196E | EU380751 | None | | | | I13V, K14R, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| 413282X | 413282X | EU380756 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 430066A | 430066A | EU380762 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Delgado (2008) | GH_019 | GH_019 | EU177896 | None | | | | I13V, K20R, M36I, R41K, L63V, I64M, H69K, L89M | CRF01_AE |
Gody (2008) | Pt004 | Pt004 | | None | | | | I13V, E35D, M36I, R41K, K45R, I62V, L63P, G68E, H69R, L89M | CRF01_AE |
| Pt029 | Pt029 | | None | | | | L10I, I13V, G16A, K20R, E35D, M36I, N37D, H69K, K70R, L89M | CRF01_AE |
| Pt041 | Pt041 | | None | | | | T12P, I13V, L19I, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| Pt045 | Pt045 | | None | | | | L10I, I13V, L19F, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Holguin (2008) | SP4-303556 | SP4-303556 | EU255377 | None | | | | I13V, L19I, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| SP18-348212 | SP18-348212 | EU255503 | None | | | L33F | L10M, T12TA, I13V, K14KR, E35D, M36I, N37ND, R41K, I62IV, G68E, H69Q, L89M, I93V | CRF01_AE |
| SP29-353349 | SP29-353349 | EU255514 | None | | | | I13V, L19LMV, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Ibe (2008) | 261 | 261 | AB356105 | None | | | L33F | T4TS, I13V, M36I, R41K, H69K, K70R, V77VI, L89M, I93L | CRF01_AE |
| 105 | 105 | AB356166 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 121 | 121 | AB356175 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 130 | 130 | AB356183 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 133 | 133 | AB356185 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| 159 | 159 | AB356207 | None | | | | I13V, K20I, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| 185 | 185 | AB356224 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 209 | 209 | AB356240 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| 228 | 228 | AB356257 | None | | | | I13V, I15V, E35D, M36I, N37D, R41K, P44PL, H69K, K70R, L89M | CRF01_AE |
| 262 | 262 | AB356278 | None | | | | I13V, T26TA, E35D, M36I, R41K, R57K, Q61E, L63P, H69K, L89M | CRF01_AE |
| 267 | 267 | AB356281 | None | | | | I13V, K14KR, K20KN, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| 294 | 294 | AB356300 | None | | | | I13V, E35ED, M36I, R41K, H69K, L89M | CRF01_AE |
| 326 | 326 | AB356325 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 333 | 333 | AB356330 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, K70R, V82VI, L89I, L97LI | CRF01_AE |
| 363 | 363 | AB356354 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 425 | 425 | AB356396 | None | | | | L10V, I13V, G16E, E35DN, M36I, N37DE, R41K, H69K, K70R, L89M | CRF01_AE |
| 437 | 437 | AB356406 | None | | | | V11A, I13V, K20I, E35D, M36I, R41K, L63LI, H69K, K70R, T74S, L89M, T91A | CRF01_AE |
| 440 | 440 | AB356408 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63I, H69K, L89M | CRF01_AE |
| 450 | 450 | AB356415 | None | | | | L10LI, I13V, G16GE, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| 464 | 464 | AB356424 | None | | | | I13V, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| 467 | 467 | AB356425 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 527 | 527 | AB356463 | None | | | | I13V, K14KR, I15IL, K20I, M36I, R41K, L63S, H69K, V82VI, L89M, T91V | CRF01_AE |
Kojima (2008) | 94-1 | 94-1 | AB252624 | None | | | | L10I, I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Ndembi (2008) | IAEM039 | IAEM039 | EU306769 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, H69K, L89M | CRF01_AE |
Nguyen (2008) | 001 | VN001 | | None | | | | I13V, E35D, M36I, R41K, H69K, T74S, L89M, I93L, F99FL | CRF01_AE |
| 010 | VN010 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 011 | VN011 | | None | | | | I13V, K14KR, E35D, M36I, R41K, R57RK, H69K, L89M, F99FL | CRF01_AE |
| 012 | VN012 | | None | | | | I13V, G16E, K20E, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 014 | VN014 | | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, L89M, F99FL | CRF01_AE |
| 017 | VN017 | | None | | | | L10I, I13V, G16E, M36I, R41K, H69K, K70R, V82VI, L89M | CRF01_AE |
| 021 | VN021 | | None | | | | I13V, K20R, M36I, R41K, Q61E, H69K, L89M, F99FL | CRF01_AE |
| 027 | VN027 | | None | | | | I13V, G16E, E35D, M36I, P39S, R41K, H69K, I72ILV, L89M, I93IFLV | CRF01_AE |
| 029 | VN029 | | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 030 | VN030 | | None | | | | I13V, G16E, K20I, M36I, R41K, G52GAEV, H69K, K70R, T74A, L89M, I93L | CRF01_AE |
| 003 | VN003 | | None | | | | I13V, E35D, M36I, R41K, H69K, K70KR, L89M, F99FL | CRF01_AE |
| 033 | VN033 | | None | | | | I13V, K20R, M36I, R41K, G68GAEV, H69K, A71G, V82I, L89M, I93L, F99FL | CRF01_AE |
| 034 | VN034 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89IM | CRF01_AE |
| 035 | VN035 | | None | | | | I13V, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 036 | VN036 | | None | | | | T12P, I13V, Q18H, E35D, M36I, R41K, L63P, H69K, L89M, F99FL | CRF01_AE |
| 037 | VN037 | | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 038 | VN038 | | None | | | | I13V, G16E, M36IV, R41K, H69K, L89M, F99FL | CRF01_AE |
| 039 | VN039 | | None | | | | I13V, G16GE, K20R, E35D, M36I, R41K, L63C, H69K, L89M, F99FL | CRF01_AE |
| 004 | VN004 | | None | | | | I13V, G16GE, K20KR, E35D, M36I, R41K, L63LCFR, H69K, L89M, F99FL | CRF01_AE |
| 043 | VN043 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 044 | VN044 | | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 045 | VN045 | | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 046 | VN046 | | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, V77I, L89M, T91V, F99FL | CRF01_AE |
| 047 | VN047 | | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 050 | VN050 | | None | | | | I13V, G16E, K20R, E35D, M36I, P39S, R41K, R57RK, H69K, K70KR, I72IV, L89M | CRF01_AE |
| 051 | VN051 | | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 052 | VN052 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93L, F99FL | CRF01_AE |
| 005 | VN005 | | None | | | | I13V, M36I, R41K, H69K, V82VI, L89M, F99FL | CRF01_AE |
| 006 | VN006 | | None | | | L33LF | I13V, M36I, P39PS, R41K, L63LP, H69K, L89M, F99FL | CRF01_AE |
| 007 | VN007 | | None | | | | I13V, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| 009 | VN009 | | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
Nyombi (2008) | TBK040 | TBK040 | EU251739 | None | | | | I13V, I15IV, E35D, M36I, R41K, R57K, I64M, H69K, L89M | CRF01_AE |
| TBK064 | TBK064 | EU251754 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89M | CRF01_AE |
| TMS134 | TMS134 | EU251832 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TMS137 | TMS137 | EU251833 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TMS337 | TMS337 | EU251874 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Palacios (2008) | 12623 | 12623 | | None | | | | I13V, L19I, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| 41023 | 41023 | | None | | | | I13V, I15V, E35D, M36I, R41K, R57RK, D60E, L63P, H69K, L89LM | CRF01_AE |
Rosen-Zvi (2008) | 36 | 02p36-1 | | None | | | | L10V, T12I, I13V, I15V, G16E, E35D, M36I, R41K, K45R, L63AT, H69K, I72IV, L89M | CRF01_AE |
| 82 | 03p82-1 | | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 83 | 06p83-1 | | None | | | | L10LV, I13V, E35D, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| | 07p83-2 | | None | | | | L10V, I13V, G16E, E35D, M36I, N37D, R41K, L63S, H69K, K70R, L89M | CRF01_AE |
| | 08p83-3 | | None | | | | L10V, I13V, E35D, M36I, N37D, R41K, L63S, H69K, K70R, L89M | CRF01_AE |
Sirivichayakul (2008) | BED-1 | BED-1Pr | JQ364259 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, K70R, L89M | CRF01_AE |
| BED-2 | BED-2Pr | JQ364260 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| BED-3 | BED-3Pr | JQ364261 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-5 | BED-5Pr | JQ364263 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-6 | BED-6Pr | JQ364264 | None | | | | I13V, M36I, N37S, R41K, H69K, L89M | CRF01_AE |
| BED-7 | BED-7Pr | JQ364265 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-9 | BED-9Pr | JQ364267 | None | | | | I13V, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L | CRF01_AE |
| BED-10 | BED-10Pr | JQ364268 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-15 | BED-15Pr | JQ364272 | None | | | L33F | I13V, G17D, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93V | CRF01_AE |
| BED-16 | BED-16Pr | JQ364273 | None | | | | L10V, I13V, G16E, E35D, M36I, L63S, H69K, L89M | CRF01_AE |
| BED-21 | BED-21Pr | JQ364277 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| BED-23 | BED-23Pr | JQ364279 | None | | | | I13V, E35D, M36I, R41K, C67Y, H69K, I72V, L89M | CRF01_AE |
| BED-25 | BED-25Pr | JQ364280 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| BED-26 | BED-26Pr | JQ364281 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-28 | BED-28Pr | JQ364282 | None | | | | L10I, I13V, K20R, E35D, M36I, R41K, H69K, L89M, I93V | CRF01_AE |
| BED-33 | BED-33Pr | JQ364285 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-34 | BED-34Pr | JQ364286 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-37 | BED-37Pr | JQ364289 | None | | | | I13V, K20I, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| BED-40 | BED-40Pr | JQ364292 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, L89M | CRF01_AE |
| BED-41 | BED-41Pr | JQ364293 | None | | | | I13V, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L | CRF01_AE |
| BED-42 | BED-42Pr | JQ364294 | None | | | | I13V, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L | CRF01_AE |
| BED-44 | BED-44Pr | JQ364295 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BED-45 | BED-45Pr | JQ364296 | None | | | | I13V, E35D, M36I, R41K, R57K, E65D, H69K, L89M | CRF01_AE |
| BED-48 | BED-48Pr | JQ364298 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| BED-49 | BED-49Pr | JQ364299 | None | | | | T12P, I13V, K20R, E35D, M36I, R41K, R57K, L63T, H69K, L89M | CRF01_AE |
| NBC-2 | NBC-2Pr | JQ364302 | None | | | | L10I, I13V, E35D, M36I, R41K, L89M | CRF01_AE |
| NBC-3 | NBC-3Pr | JQ364303 | None | | | | L10M, I13V, G17E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-5 | NBC-5Pr | JQ364305 | None | | | | L10I, I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| NBC-6 | NBC-6Pr | JQ364306 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-8 | NBC-8Pr | JQ364308 | None | | | | I13V, E35D, M36I, N37D, R41K, I64V, H69K, K70R, L89M | CRF01_AE |
| NBC-9 | NBC-9Pr | JQ364309 | None | | | | I13V, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| NBC-10 | NBC-10Pr | JQ364310 | None | | | | I13V, G16E, E35N, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NBC-11 | NBC-11Pr | JQ364311 | None | | | | I13V, K14R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| NBC-14 | NBC-14Pr | JQ364314 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NBC-15 | NBC-15Pr | JQ364315 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-16 | NBC-16Pr | JQ364316 | None | | | | L10V, I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-17 | NBC-17Pr | JQ364317 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| NBC-22 | NBC-22Pr | JQ364322 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-24 | NBC-24Pr | JQ364324 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-27 | NBC-27Pr | JQ364327 | None | | | | T12P, I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| NBC-28 | NBC-28Pr | JQ364328 | None | | | | I13V, E35D, M36I, R41K, I62V, L63F, H69K, K70R, L89M | CRF01_AE |
| NBC-33 | NBC-33Pr | JQ364333 | None | | | | L10V, I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| NBC-34 | NBC-34Pr | JQ364334 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-35 | NBC-35Pr | JQ364335 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NBC-36 | NBC-36Pr | JQ364336 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-37 | NBC-37Pr | JQ364337 | None | | | | L10I, I13V, G16E, E35D, M36I, N37D, R41K, H69K, K70R, I72V, P79H, L89I | CRF01_AE |
| NBC-38 | NBC-38Pr | JQ364338 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| NBC-39 | NBC-39Pr | JQ364339 | None | | | | L10V, I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-47 | NBC-47Pr | JQ364344 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-49 | NBC-49Pr | JQ364345 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NBC-50 | NBC-50Pr | JQ364346 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Wang (2008) | CYM005 | CYM005 | EU921956 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CYM007 | CYM007 | EU921958 | None | | | | I13V, I15V, L19M, M36I, R41K, L63P, H69K, K70KR, L89M | CRF01_AE |
| CYM015 | CYM015 | EU921964 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Aghokeng (2009) | CYN851 | CYN851 | GU191584 | None | | | | T12I, I13V, E35N, M36I, N37D, R41K, K45R, H69K, L89M | CRF01_AE |
| CYN194 | CYN194 | GU191586 | None | | | | I13V, E35N, M36I, N37D, R41K, K43R, L63P, H69K, L89M | CRF01_AE |
| CYO035 | CYO035 | GU191587 | None | | | | I13V, G16A, E35N, M36I, N37D, R41K, I62V, H69K, I72M, L89M | CRF01_AE |
| CDB0003 | CDB0003 | GU191634 | None | | | | L10V, I13V, K14KN, I15V, G16A, E35D, M36I, R41K, I62V, L63V, I64L, H69K, L89M | CRF01_AE |
| DD0242 | DD0242 | GU191643 | None | | | | I13V, G16E, E35N, M36I, N37D, R41K, K45R, H69K, I72R, L89M | CRF01_AE |
| AV_0206 | AV_0206 | GU191654 | None | | | | L10V, I13V, G17E, K20I, M36I, N37K, R41K, K55KR, L89M | CRF01_AE |
| HG_0344 | HG_0344 | GU191660 | None | | | | I13V, G17E, E35D, M36I, R41K, I62IV, L63S, H69K, L89M | CRF01_AE |
| HU_0093 | HU_0093 | GU191669 | None | | | | I13V, L19I, E35N, M36I, N37D, R41K, K43R, K45KR, R57K, H69K, L89M | CRF01_AE |
Auwanit (2009) | 21 | AE-PR21 | | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| 61 | AE-PR61 | | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M, L97I | CRF01_AE |
| 93 | AE-PR93 | | None | | | | T12P, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 98 | AE-PR98 | | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 129 | AE-PR129 | | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| 135 | AE-PR135 | | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 143 | AE-PR143 | | None | | | | L10M, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 13 | AE-PR13 | FJ463512 | None | | | L33F | I13V, M36I, R41K, H69K, L89M, I93V | CRF01_AE |
| 14 | AE-PR14 | FJ463513 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 17 | AE-PR17 | FJ463514 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, T74A, L89M, T91S | CRF01_AE |
| 19 | AE-PR19 | FJ463515 | None | | | | L10I, I13V, G16E, E35D, M36I, P39Q, R41K, H69K, I72V, L89M, C95G | CRF01_AE |
| 67 | AE-PR67 | FJ463520 | None | | | | I13V, E35D, M36I, R41K, D60DE, Q61QE, H69K, L89M | CRF01_AE |
| 68 | AE-PR68 | FJ463521 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 76 | AE-PR76 | FJ463523 | None | | | V11VI | T12A, I13V, E21K, E35D, M36I, R41K, R57K, I64V, H69K, L89M, T91S | CRF01_AE |
| 79 | AE-PR79 | FJ463524 | None | | | | L10I, I13V, G16GE, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| 81 | AE-PR81 | FJ463525 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 83 | AE-PR83 | FJ463526 | None | | | | L10I, I13V, K14R, L33V, M36I, R41K, H69K, L89M | CRF01_AE |
| 91 | AE-PR91 | FJ463527 | None | | | | I13V, I15V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| 97 | AE-PR97 | FJ463529 | None | | | | I13V, G17E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 104 | AE-PR104 | FJ463530 | None | | | | L10I, I13V, I15V, G16E, K20E, E35D, M36I, R41K, G51*R, L63T, H69K, K70R, L89M | CRF01_AE |
| 105 | AE-PR105 | FJ463531 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, K70KR, L89M | CRF01_AE |
| 107 | AE-PR107 | FJ463532 | None | | | | L10V, I13V, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| 112 | AE-PR112 | FJ463534 | None | | | | L10LI, I13V, G16GE, E35D, M36I, R41K, L63AV, H69K, L89M | CRF01_AE |
| 113 | AE-PR113 | FJ463535 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| 114 | AE-PR114 | FJ463536 | None | | | | I13V, E35ED, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| 119 | AE-PR119 | FJ463537 | None | | | | I13V, E35ED, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| 121 | AE-PR121 | FJ463538 | None | | | | I13V, E35ED, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| 128 | AE-PR128 | FJ463539 | None | | | | I13V, G17E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 130 | AE-PR130 | FJ463540 | None | | | | L10I, I13V, I15V, G16E, E35D, M36I, R41K, L63T, H69K, K70R, L89M | CRF01_AE |
| 133 | AE-PR133 | FJ463541 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, K70KR, L89M | CRF01_AE |
| 134 | AE-PR134 | FJ463542 | None | | | | L10LV, I13V, K14KR, I15V, Q18QH, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 153 | AE-PR153 | FJ463544 | None | | | | I13V, I15V, E21ED, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 156 | AE-PR156 | FJ463545 | None | | | L33F | I13V, E35D, M36I, R41K, R57K, C67S, H69K, L89M | CRF01_AE |
| 158 | AE-PR158 | FJ463546 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 161 | AE-PR161 | FJ463548 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| 162 | AE-PR162 | FJ463549 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82VI, R87RQ, L89M | CRF01_AE |
| 164 | AE-PR164 | FJ463550 | None | | | | T12P, I13V, E35D, M36I, R41K, H69K, K70KR, V82VI, L89M | CRF01_AE |
Ayouba (2009) | FD0047 | FD0047PI | GQ352053 | None | | | | I13V, E35D, M36I, N37S, R41K, H69K, L89M | CRF01_AE |
| FD0291 | FD0291PI | GQ352054 | None | | | | I13V, E35D, M36I, N37D, R41K, D60E, L63P, H69K, L89M | CRF01_AE |
| FD0340 | FD0340PI | GQ352059 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| FD0366 | FD0366PI | GQ352061 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| FD0369 | FD0369PI | GQ352056 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0414 | FD0414PI | GQ352063 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0487 | FD0487PI | GQ352072 | None | | | | I13V, M36I, R41K, L63P, H69K, K70R | CRF01_AE |
| FD0435 | FD0435PI | GQ352108 | None | | | | I13V, K14KR, E35D, M36I, R41K, H69K, L89I | CRF01_AE |
| FD0440 | FD0440PI | GQ352065 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M, T91V | CRF01_AE |
| FD0456 | FD0456PI | GQ352066 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0458 | FD0458PI | GQ352068 | None | | | L33F | I13V, E35D, M36I, R41K, H69K, L89M, I93V | CRF01_AE |
| FD0459 | FD0459PI | GQ352069 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0471 | FD0471PI | GQ352070 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, V77I, L89M | CRF01_AE |
| FD0481 | FD0481PI | GQ352062 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0492 | FD0492PI | GQ352109 | None | | | | L10V, T12TA, I13V, I15V, E35D, M36I, R41K, R57K, L63V, H69K, L89M | CRF01_AE |
| FD0525 | FD0525PI | GQ352075 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0526 | FD0526PI | GQ352076 | None | | | | L10V, I13V, E35D, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
| FD0538 | FD0538PI | GQ352078 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0539 | FD0539PI | GQ352079 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| FD0549 | FD0549PI | GQ352071 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0648 | FD0648PI | GQ352090 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M, T91V | CRF01_AE |
| FD0555 | FD0555PI | GQ352081 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0567 | FD0567PI | GQ352083 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0585 | FD0585PI | GQ352084 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0606 | FD0606PI | GQ352085 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0610 | FD0610PI | GQ352086 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0639 | FD0639PI | GQ352087 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0645 | FD0645PI | GQ352088 | None | | | L33F | I13V, E35D, M36I, R41K, R57K, C67Y, H69K, K70R, L89M, I93IV | CRF01_AE |
| FD0646 | FD0646PI | GQ352080 | None | | | L33F | I13V, E35D, M36I, P39Q, R41K, H69K, L89M, I93V, L97I | CRF01_AE |
| FD0832 | FD0832PI | GQ352100 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0671 | FD0671PI | GQ352092 | None | | | | I13V, K20R, E35ED, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| FD0704 | FD0704PI | GQ352093 | None | | | | L10I, I13V, G16GE, K20KR, E35D, M36I, R41K, K45R, L63S, H69K, K70R, V82VI, L89M, I93V | CRF01_AE |
| FD0707 | FD0707PI | GQ352094 | None | | | | I13V, I15V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0731 | FD0731PI | GQ352096 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0802 | FD0802PI | GQ352097 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0815 | FD0815PI | GQ352098 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0816 | FD0816PI | GQ352089 | None | | | | L10I, T12P, I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| FD0901 | FD0901PI | GQ352099 | None | | | | I13V, E35D, M36I, R41K, K45R, L63S, H69K, L89M | CRF01_AE |
| FD0833 | FD0833PI | GQ352101 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| FD0836 | FD0836PI | GQ352102 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0851 | FD0851PI | GQ352104 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0864 | FD0864PI | GQ352106 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FD0881 | FD0881PI | GQ352107 | None | | | | I13V, I15V, G16E, E35D, M36I, R41K, L63T, E65D, H69K, L89M | CRF01_AE |
| R07 | R07_PR | GQ352112 | None | | | | I13V, Q18QP, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| R09 | R09_PR | GQ352113 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| R11 | R11_PR | GQ352115 | None | | | | I13V, I15V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| R12 | R12_PR | GQ352116 | None | | | | I13V, E35ED, M36I, R41K, H69K, L89M | CRF01_AE |
| R13 | R13_PR | GQ352117 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| R14 | R14_PR | GQ352118 | None | | | | I13V, G17E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| R15 | R15_PR | GQ352119 | None | | | | I13V, E35D, M36I, R41K, R57K, Y59F, L63C, H69K, L89M | CRF01_AE |
| R17 | R17_PR | GQ352120 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| R20 | R20_PR | GQ352121 | None | | | | I13V, G16E, E35D, M36I, R41K, K43R, L63C, H69K, L89M | CRF01_AE |
| R21 | R21_PR | GQ352122 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| R24 | R24_PR | GQ352125 | None | | | | T12S, I13V, L19I, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| R25 | R25_PR | GQ352126 | None | | | | Q7QHL, I13V, K14KT, Q18QR, M36I, R41K, H69K, K70KE, L89LM | CRF01_AE |
| R29 | R29_PR | GQ352130 | None | | | | I13V, I15V, L19Q, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| R32 | R32_PR | GQ352133 | None | | | | I13V, I15V, K20I, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| R33 | R33_PR | GQ352134 | None | | | | I13V, I15V, E35D, M36I, R41RK, I66IF, H69K, K70KE, V82I, I85IV, L89M, I93L | CRF01_AE |
| R34 | R34_PR | GQ352135 | None | | | | I13V, E35D, M36I, R41K, I66T, H69K, L89M | CRF01_AE |
| R35 | R35_PR | GQ352136 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63C, H69K, K70R, L89M, F99L | CRF01_AE |
| R36 | R36_PR | GQ352137 | None | | | | I13V, G16A, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| R41 | R41_PR | GQ352141 | None | | | | I13V, E35D, M36I, R41K, H69Q, L89M | CRF01_AE |
| R42 | R42_PR | GQ352142 | None | | | | I13V, G16E, K20R, E35D, M36I, N37D, R41K, G49E, C67W, H69K, K70R, L89M | CRF01_AE |
| R43 | R43_PR | GQ352143 | None | | | | I13V, G16E, E35N, M36I, R41K, K45R, L63C, H69K, L89M | CRF01_AE |
| R44 | R44_PR | GQ352144 | None | | | | I13V, G16A, K20R, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| R46 | R46_PR | GQ352145 | None | | | | I13V, E35D, M36I, R41K, R57K, L63C, H69K, L89M, I93L | CRF01_AE |
| R51 | R51_PR | GQ352149 | None | | | | L10I, I13V, G16A, E35D, M36I, N37D, R41K, R57RK, I62IV, H69K, K70R, I72E, L89M | CRF01_AE |
| R54 | R54_PR | GQ352152 | None | | | | I13V, G16E, E35D, M36I, R41K, H69D, I72KR, L89M | CRF01_AE |
| R57 | R57_PR | GQ352155 | None | | | | I13V, L19I, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| R58 | R58_PR | GQ352156 | None | | | | I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| R60 | R60_PR | GQ352158 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| R61 | R61_PR | GQ352159 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| R65 | R65_PR | GQ352162 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| R66 | R66_PR | GQ352163 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, L89M | CRF01_AE |
| R70 | R70_PR | GQ352164 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| R76 | R76_PR | GQ352168 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| R77 | R77_PR | GQ352169 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| R78 | R78_PR | GQ352170 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, V82I, L89M | CRF01_AE |
| R80 | R80_PR | GQ352172 | None | | | | I13V, E35D, M36I, R41K, I64V, H69K, K70R, L89M | CRF01_AE |
Bartolo (2009) | HDC235 | 01AOHDC235 | EU068227 | None | | | | L10V, I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HDP112 | 01AOHDP112 | EU068236 | None | | | | L10I, I13V, E35D, M36I, R41K, L63V, C67Y, H69K, L89M | CRF01_AE |
| HSL38 | 01AOHSL38 | EU068261 | None | | | | L10V, I13V, I15V, E35D, M36I, N37D, R41K, R57K, D60E, Q61E, L63P, H69K, L89M | CRF01_AE |
| SNS35 | 01AOSNS35 | EU068297 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| SNS53 | 01AOSNS53 | EU068307 | None | | | | I13V, L19I, E35D, M36I, R41K, K45R, R57K, I62V, L63P, C67Y, H69K, L89M | CRF01_AE |
Brennan (2009) | A25 | ARC-A25 | EU711473 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A32 | ARC-A32 | EU711442 | None | | | | I13V, K14R, G17E, L19LM, K20IM, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
Brumme (2009) | A7531 | A7531 | GQ371781 | None | | | | L10V, I13V, I15V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| Y0523 | Y0523 | GQ372272 | None | | | | T12P, I13V, L33V, I62V, L63S, I64V, Q92QE, I93IL | CRF01_AE |
Cuevas (2009) | X2721_1 | X2721_1 | GU326188 | None | | | | I13V, M36I, P39S, R41K, D60E, Q61E, L63P, H69K, L89M, I93L | CRF01_AE |
Eshleman (2009) | G12165A6 | 08-101572 | FJ389125 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Fujisaki (2009) | 18 | 18 | AB442230 | None | | | L33F | I13V, E35D, M36I, R41K, R57K, H69K, K70KR, L89IM | CRF01_AE |
| 32 | 32 | AB442235 | None | | | L33LF | R8R*, L10LV, I13V, G17E, K20R, M36I, R41RK, I62V, L63PS, H69K, L89LM | CRF01_AE |
| 34 | 34 | AB442236 | None | | | | I13V, G17E, K20R, M36I, I62V, L63P, H69K, L89M | CRF01_AE |
| 55 | 55 | AB442244 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 59 | 59 | AB442246 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 67 | 67 | AB442250 | None | | | | L10LI, I13V, G16GE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 585 | 585 | AB442256 | None | | | L33F | L10LR, I13V, E35D, M36I, R41K, R57K, L63P, H69HKNQ, V77VIM, L89M, I93V | CRF01_AE |
| 631 | 631 | AB442295 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V77I, L89M, L97I | CRF01_AE |
| 651 | 651 | AB442312 | None | | | | I13V, E35D, M36I, R41K, I62IV, L63P, C67S, H69K, V77VI, L89M | CRF01_AE |
| 665 | 665 | AB442323 | None | | | L33F | L10I, I13V, M36I, R41K, K55KR, H69K, K70KR, V82I, L89M, I93V, F99L | CRF01_AE |
| 709 | 709 | AB442352 | None | | | | I13V, I15V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
Ishizaki (2009) | E14 | E14g | FJ006949 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| E33 | E33 | FJ006951 | None | | | | I13V, G16A, K20R, E35D, M36I, N37D, R41K, L63P, H69K, K70R, L89M, Q92K | CRF01_AE |
| C11 | C11g | FJ006956 | None | | | | I13V, G16A, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| C14 | C14 | FJ006958 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| C15 | C15 | FJ006959 | None | | | | I13V, G16E, K20R, E35D, M36I, P39Q, R41K, H69K, K70R, L89M | CRF01_AE |
| C16 | C16g | FJ006960 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C20 | C20c | FJ006963 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| C25 | C25 | FJ006967 | None | | | | I13V, E35D, M36I, R41K, H69K, T74S, L89M, I93L | CRF01_AE |
| C29 | C29 | FJ006968 | None | | | | I13V, G16A, K20I, E35D, M36V, R41K, H69K, L89M | CRF01_AE |
| C39 | C39 | FJ006969 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C47 | C47a | FJ006972 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C51 | C51g | FJ006974 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C58 | C58a | FJ006976 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C68 | C68 | FJ006978 | None | | | | L10I, I13V, E35D, M36I, R41K, C67Y, H69K, L89M | CRF01_AE |
| C80 | C80aag | FJ006981 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C89 | C89ag | FJ006983 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, V82I, L89M, I93V | CRF01_AE |
| A2_20 | A2_20 | FJ006987 | None | | | | I13V, E35D, M36I, R41K, G68E, H69K, L89M | CRF01_AE |
| A2_22 | A2_22tc | FJ006988 | None | | | | I13V, K20I, E35D, M36I, R41K, I62V, L63P, H69K, L89M | CRF01_AE |
| A2_41 | A2_41 | FJ006990 | None | | | | I13V, E35D, M36I, R41K, R57K, D60E, H69K, L89M | CRF01_AE |
| A2_51 | A2_51g | FJ006991 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_56 | A2_56tt | FJ006993 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A2_58 | A2_58a | FJ006995 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_61 | A2_61c | FJ006997 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_84 | A2_84ca | FJ007000 | None | | | | I13V, L19Q, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_89 | A2_89g | FJ007002 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_92 | A2_92 | FJ007004 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_101 | A2_101 | FJ007005 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_114 | A2_114gaa | FJ007008 | None | | | | I13V, Q18M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_135 | A2_135a | FJ007012 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_145 | A2_145t | FJ007014 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_154 | A2_154 | FJ007016 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_157 | A2_157a | FJ007017 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_162 | A2_162 | FJ007019 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, H69R, K70Q, L89M | CRF01_AE |
| A2_164 | A2_164t | FJ007020 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| A2_174 | A2_174ta | FJ007024 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_177 | A2_177 | FJ007026 | None | | | | L10V, I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_178 | A2_178 | FJ007027 | None | | | | I13V, E35D, M36I, R41K, L63M, H69K, K70R, L89M | CRF01_AE |
| A2_179 | A2_179 | FJ007028 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_187 | A2_187 | FJ007029 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_188 | A2_188t | FJ007030 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_190 | A2_190aagg | FJ007032 | None | | | | L10V, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_195 | A2_195 | FJ007035 | None | | | | I13V, G16E, L19I, K20I, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| A2_200 | A2_200aag | FJ007036 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_206 | A2_206 | FJ007038 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_211 | A2_211 | FJ007039 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| A2_215 | A2_215 | FJ007040 | None | | | | I13V, G17E, K20R, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| A2_223 | A2_223 | FJ007041 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_225 | A2_225 | FJ007042 | None | | | | I13V, G16E, E35D, M36I, R41K, L63N, H69K, L89M, T91A | CRF01_AE |
| A2_232 | A2_232 | FJ007044 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_236 | A2_236aa | FJ007045 | None | | | | I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| A2_239 | A2_239c | FJ007047 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_241 | A2_241g | FJ007049 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_243 | A2_243a | FJ007051 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_263 | A2_263 | FJ007055 | None | | | | I13V, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| A2_264 | A2_264 | FJ007056 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_275 | A2_275 | FJ007057 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A2_281 | A2_281t | FJ007058 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_285 | A2_285 | FJ007060 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_294 | A2_294a | FJ007061 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_314 | A2_314g | FJ007063 | None | | | | I13V, M36I, R41K, K43R, H69K, K70R, L89M | CRF01_AE |
| A2_317 | A2_317 | FJ007065 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_323 | A2_323 | FJ007066 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_336 | A2_336 | FJ007069 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_340 | A2_340 | FJ007070 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_345 | A2_345t | FJ007071 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K | CRF01_AE |
| A2_349 | A2_349aaat | FJ007073 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_365 | A2_365 | FJ007077 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_374 | A2_374a | FJ007078 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_376 | A2_376 | FJ007080 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_383 | A2_383 | FJ007081 | None | | | | I13V, G16E, K20R, E35D, M36I, P39S, R41K, K45R, H69K, L89M | CRF01_AE |
| A2_387 | A2_387 | FJ007082 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| A2_389 | A2_389 | FJ007083 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_395 | A2_395 | FJ007084 | None | | | | I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| A2_398 | A2_398 | FJ007085 | None | | | | I13V, E35D, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
| A2_399 | A2_399g | FJ007086 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
| A2_419 | A2_419 | FJ007090 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| A2_420 | A2_420a | FJ007091 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_422 | A2_422aag | FJ007093 | None | | | | I13V, K14R, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_424 | A2_424 | FJ007095 | None | | | | L10I, I13V, M36I, R41K, H69K, L89I | CRF01_AE |
| A2_425 | A2_425gag | FJ007096 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_426 | A2_426 | FJ007098 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_441 | A2_441 | FJ007099 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_444 | A2_444 | FJ007100 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_445 | A2_445 | FJ007101 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A2_448 | A2_448 | FJ007102 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, L89M, T91S | CRF01_AE |
| A2_449 | A2_449 | FJ007103 | None | | | | I13V, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A2_451 | A2_451 | FJ007104 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_460 | A2_460 | FJ007105 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_474 | A2_474 | FJ007110 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A2_477 | A2_477c | FJ007111 | None | | | | I13V, G16E, E35D, M36I, N37K, R41K, I62V, H69K, L89M | CRF01_AE |
| A1 | A1 | FJ007113 | None | | | | I13V, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| A3 | A3a | FJ007114 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A13 | A13ag | FJ007116 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A25 | A25 | FJ007120 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A35 | A35ga | FJ007121 | None | | | | I13V, E35D, M36I, N37D, R41K, K43R, H69K, V82I, L89M | CRF01_AE |
| A39 | A39c | FJ007124 | None | | | | I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| A40 | A40 | FJ007126 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A43 | A43 | FJ007127 | None | | | | I13V, E35D, M36I, R41K, R57K, H69R, K70Q, L89M | CRF01_AE |
| A47 | A47 | FJ007130 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A57 | A57 | FJ007131 | None | | | | I13V, E35D, M36I, R41K, H69K | CRF01_AE |
| A60 | A60 | FJ007132 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A63 | A63 | FJ007133 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| A64 | A64a | FJ007134 | None | | | | I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| A67 | A67 | FJ007136 | None | | | | I13V, E35D, M36I, R41K, L63P, I64M, H69K, P79S, L89M | CRF01_AE |
| A70 | A70 | FJ007137 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89I, Q92K | CRF01_AE |
| A78 | A78g | FJ007140 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| A80 | A80a | FJ007142 | None | | | | T12P, I13V, K14R, G16E, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| A85 | A85 | FJ007144 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A87 | A87 | FJ007145 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| A93 | A93 | FJ007146 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A96 | A96tagg | FJ007147 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A106 | A106 | FJ007153 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A111 | A111 | FJ007154 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A113 | A113 | FJ007155 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, Q61E, H69K, K70R, L89M | CRF01_AE |
| A117 | A117ac | FJ007156 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A118 | A118 | FJ007158 | None | | | | I13V, I15L, K20I, M36I, R41K, Q61E, H69K, L89M | CRF01_AE |
| A123 | A123 | FJ007159 | None | | | | I13V, E35D, M36I, R41K, I62V, I64L, H69K, P79D, L89M | CRF01_AE |
| A125 | A125g | FJ007160 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A127 | A127 | FJ007162 | None | | | | L10I, I13V, G16E, K20I, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| A129 | A129g | FJ007163 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A132 | A132a | FJ007165 | None | | | | I13V, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| A134 | A134ga | FJ007167 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A140 | A140 | FJ007170 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A149 | A149 | FJ007171 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A150 | A150 | FJ007172 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A152 | A152 | FJ007173 | None | | | | I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A154 | A154 | FJ007174 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A159 | A159 | FJ007177 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| A160 | A160g | FJ007178 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A162 | A162 | FJ007180 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A163 | A163ca | FJ007181 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A166 | A166tg | FJ007183 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| A168 | A168 | FJ007187 | None | | | | T12P, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A174 | A174g | FJ007190 | None | | | | L10I, I13V, K14R, G16E, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| A175 | A175 | FJ007192 | None | | | | I13V, E35D, M36I, N37S, R41K, H69K, L89M | CRF01_AE |
| A177 | A177t | FJ007193 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A180 | A180ag | FJ007195 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A185 | A185a | FJ007197 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A186 | A186ata | FJ007199 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| A190 | A190ga | FJ007201 | None | | | | I13V, Q18M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A195 | A195 | FJ007205 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A197 | A197 | FJ007206 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A198 | A198 | FJ007207 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A200 | A200a | FJ007209 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A209 | A209a | FJ007212 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A218 | A218ggg | FJ007214 | None | | | | L10I, I13V, K20R, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A223 | A223 | FJ007218 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A225 | A225t | FJ007219 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| A227 | A227 | FJ007221 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A231 | A231aaag | FJ007222 | None | | | | I13V, K20I, M36I, R41K, H69K, L89M | CRF01_AE |
| A233 | A233a | FJ007224 | None | | | | I13V, E35D, M36I, R41K, L63T, H69K, I72T, L89M | CRF01_AE |
| A234 | A234a | FJ007226 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A237 | A237 | FJ007228 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A243 | A243a | FJ007229 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A245 | A245 | FJ007233 | None | | | | I13V, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| A248 | A248 | FJ007235 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, A71T, L89M, I93L | CRF01_AE |
| A251 | A251 | FJ007236 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A253 | A253a | FJ007237 | None | | | | I13V, E35N, M36I, R41K, H69K, L89M | CRF01_AE |
| A258 | A258cag | FJ007239 | None | | | | I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| A260 | A260 | FJ007241 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A267 | A267 | FJ007242 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, L89M, T91S | CRF01_AE |
| A271 | A271 | FJ007243 | None | | | | I13V, L19V, E35D, M36I, G40E, R41K, K43R, H69K, L89M | CRF01_AE |
| A272 | A272 | FJ007244 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A276 | A276aa | FJ007245 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A277 | A277ta | FJ007247 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| A281 | A281 | FJ007249 | None | | | | L10I, I13V, K14R, L33V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| A286 | A286ct | FJ007253 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A289 | A289ct | FJ007256 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A290 | A290 | FJ007258 | None | | | | I13V, I15V, M36T, R41K, H69K, L89M | CRF01_AE |
| A296 | A296 | FJ007261 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A298 | A298 | FJ007262 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| A305 | A305 | FJ007263 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A312 | A312 | FJ007264 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A314 | A314 | FJ007267 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| A320 | A320t | FJ007271 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A331 | A331 | FJ007276 | None | | | | I13V, E35D, M36I, N37D, H69K, L89M | CRF01_AE |
| A332 | A332 | FJ007277 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A333 | A333a | FJ007278 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A341 | A341g | FJ007282 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A342 | A342 | FJ007284 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A345 | A345g | FJ007285 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A346 | A346g | FJ007287 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A347 | A347 | FJ007289 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A349 | A349a | FJ007290 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A353 | A353 | FJ007292 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A355 | A355a | FJ007293 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A357 | A357 | FJ007295 | None | | | | I13V, G16E, K20R, E35D, M36I, P39S, R41K, K45R, H69K, L89M | CRF01_AE |
| A360 | A360a | FJ007296 | None | | | V11I | I13V, G16E, K20I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A370 | A370 | FJ007302 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A381 | A381 | FJ007303 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A387 | A387 | FJ007304 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A388 | A388ct | FJ007305 | None | | | | I13V, M36I, R41K, L63P, H69K, T74S, L89M, I93L | CRF01_AE |
| A389 | A389 | FJ007307 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A392 | A392g | FJ007308 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A396 | A396aga | FJ007311 | None | | | | I13V, M36I, N37D, R41K, D60E, Q61E, L63P, H69K, K70R, L89M | CRF01_AE |
| A400 | A400-07 | FJ007313 | None | | | | L10V, I13V, K14R, E35E_N, M36I, R41K, H69K, L89M | CRF01_AE |
| A402 | A402 | FJ007314 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A403 | A403a | FJ007315 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| A406 | A406g | FJ007317 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A411 | A411 | FJ007320 | None | | | | I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A415 | A415 | FJ007321 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A417 | A417 | FJ007322 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, T91A | CRF01_AE |
| A434 | A434 | FJ007328 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A447 | A447 | FJ007331 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| A452 | A452 | FJ007332 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| A457 | A457 | FJ007333 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A459 | A459 | FJ007336 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A472 | A472 | FJ007337 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A475 | A475 | FJ007338 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A482 | A482 | FJ007339 | None | | | | I13V, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| A487 | A487g | FJ007340 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A493 | A493 | FJ007342 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A494 | A494a | FJ007343 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| E166 | E166 | FJ007346 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A26 | A26 | FJ007348 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A325 | A325 | FJ007352 | None | | | | I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A328 | A328 | FJ007353 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A337 | A337 | FJ007354 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A363 | A363 | FJ007355 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| A378 | A378 | FJ007356 | None | | | | I13V, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A465 | A465 | FJ007359 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_3 | A2_3 | FJ007360 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_49 | A2_49 | FJ007361 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_64 | A2_64 | FJ007362 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_65 | A2_65 | FJ007363 | None | | | | I13V, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| A2_90 | A2_90 | FJ007364 | None | | | | I13V, E35D, M36I, R41K, H69K, A71V, L89M, I93L | CRF01_AE |
| A2_212 | A2_212 | FJ007365 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| A2_382 | A2_382 | FJ007368 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A2_384 | A2_384 | FJ007369 | None | | | | I13V, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
Kousiappa (2009) | CY179 | CY179 | EU673410 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Koyalta (2009) | 19 | TCHAD-19 | FJ688178 | None | | | | I13V, G16E, L19I, E35N, M36I, N37D, R41K, K45R, R57K, L63H, H69K, I72V, V75I, L89M | CRF01_AE |
| 35 | TCHAD-35 | FJ688185 | None | | | | I13V, K14R, L19Q, E35D, M36I, R41K, Q61H, H69K, L89M | CRF01_AE |
| 59 | TCHAD-59 | FJ688193 | None | | | | L10V, I13V, L19P, K20I, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| 67 | TCHAD-67 | FJ688198 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Lee (2009) | S07003 | S07003 | EU715177 | None | | | | I13V, K14R, E35D, M36I, N37D, R41K, R57K, D60E, H69K, K70R, L89M | CRF01_AE |
| S07004 | S07004 | EU715178 | None | | | | I13V, K20KR, E35D, M36I, R41K, L63LP, H69K, L89M, I93L | CRF01_AE |
| S07030 | S07030 | EU715179 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| S07018 | S07018 | EU715180 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| S07024 | S07024 | EU715181 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| S07028 | S07028 | EU715183 | None | | | | I13V, E35D, M36I, P39S, R41K, H69K, L89M | CRF01_AE |
| S07007 | S07007 | EU715184 | None | | | | I13V, E35D, M36I, R41K, H69K, I72M, L89M | CRF01_AE |
| S07034 | S07034 | EU715186 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| S07035 | S07035 | EU715187 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| S07037 | S07037 | EU715188 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M, I93M | CRF01_AE |
| S07041 | S07041 | EU715190 | None | | | | I13V, I15IV, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| S07017 | S07017 | EU715191 | None | | | | I13V, K20I, E35D, M36I, R41K, C67CW, H69K, K70R, V82I, L89M | CRF01_AE |
| S07045 | S07045 | EU715192 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| S07042 | S07042 | EU715193 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| S07020 | S07020 | EU715194 | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| S07016 | S07016 | EU715195 | None | | | | I13V, G17GE, E35D, M36I, R41K, H69K, K70KQR, L89M | CRF01_AE |
| S07008 | S07008 | EU715196 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| S07046 | S07046 | EU715219 | None | | | | I13V, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| S07047 | S07047 | EU715221 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93L, L97I | CRF01_AE |
| S07050 | S07050 | EU715223 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| S07052 | S07052 | EU715225 | None | | | | I13V, E35D, M36I, P39S, R41K, H69K, L89M | CRF01_AE |
| S07053 | S07053 | EU715226 | None | | | | I13V, E35D, M36I, N37D, R57K, L63P, H69K, K70R, L89M | CRF01_AE |
| S07056 | S07056 | EU715230 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| S07060 | S07060 | EU715234 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
Liao (2009) | VNBG4 | VNBG4 | FJ185228 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNBG5 | VNBG5 | FJ185229 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNBG6 | 98VNBG6 | FJ185230 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNBG7 | 98VNBG7 | FJ185231 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| VNHD9 | 98VNHD9 | FJ185232 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHD10 | 98VNHD10 | FJ185233 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHD11 | 98VNHD11 | FJ185234 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNND15 | 98VNND15 | FJ185235 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNND17 | 98VNND17 | FJ185236 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHCM301 | 97VNHCM301 | FJ185237 | None | | | | I13V, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| VNHCM302 | 97VNHCM302 | FJ185238 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHCM303 | 97VNHCM303 | FJ185239 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHCM310 | 97VNHCM310 | FJ185240 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHCM314 | 97VNHCM314 | FJ185241 | None | | | | I13V, E35D, M36I, R41K, R57K, L63C, H69K, L89M | CRF01_AE |
| VNHCM319 | 97VNHCM319 | FJ185242 | None | | | | I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M, I93S | CRF01_AE |
| VNHCM343 | 97VNHCM343 | FJ185243 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHCM345 | 97VNHCM345 | FJ185244 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNAG201 | 97VNAG201 | FJ185245 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNAG202 | 97VNAG202 | FJ185246 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNAG204 | 97VNAG204 | FJ185247 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNAG206 | 97VNAG206 | FJ185248 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| VNAG207 | 97VNAG207 | FJ185249 | None | | | | I13V, K20KI, D25Y, E35D, M36I, R41K, Q61H, I62V, L63P, H69K, K70R, L89M | CRF01_AE |
| VNAG208 | 97VNAG208 | FJ185250 | None | | | | I13V, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| VNAG210 | 97VNAG210 | FJ185251 | None | | | | L10I, I13V, K20I, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| VNAG212 | 97VNAG212 | FJ185252 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| VNAG214 | 97VNAG214 | FJ185253 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNAG216 | 97VNAG216 | FJ185254 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| VNAG218 | 97VNAG218 | FJ185255 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNAG220 | 97VNAG220 | FJ185256 | None | | | | I13V, E35N, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| VNAG221 | 97VNAG221 | FJ185257 | None | | | | I13V, E35N, M36I, N37D, R41K, H69K, L89M, I93M | CRF01_AE |
| VNAG223 | 97VNAG223 | FJ185258 | None | | | | I13V, E35N, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHCM306 | 97VNHCM306 | FJ185259 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VNHCM309 | 97VNHCM309 | FJ185260 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Luo (2009) | wh.1466 | 05HBwh.1466 | FJ375090 | None | | | | I13V, G17E, K20R, M36I, R41K, H69K, K70R, L89M, I93L | CRF01_AE |
| wh.1890 | 06HBwh.1890 | FJ375097 | None | | | | L10V, I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Nouhin (2009) | KC03 | KC03PROT | FJ531941 | None | | | | L5LF, I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| KC05 | KC05PROT | FJ531943 | None | | | | L5LF, L10I, I13V, G16EK, M36I, R41K, H69K, L89M | CRF01_AE |
| KC06 | KC06PROT | FJ531944 | None | | | | L5LF, I13V, L19LV, K20I, T26TS, E35D, M36I, R41K, E65EK, H69K, V82I, L89M | CRF01_AE |
| KC08 | KC08PROT | FJ531946 | None | | | | I13V, G16E, K20KR, E35D, M36I, R41K, I62V, G68E, H69K, K70R, I72V, L89M | CRF01_AE |
| KC09 | KC09PROT | FJ531947 | None | | | | L5LF, T12A, I13V, L19LV, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| KC10 | KC10PROT | FJ531948 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| KC13 | KC13PROT | FJ531950 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| KC16 | KC16PROT | FJ531953 | None | | | | L5LF, I13V, L19LV, E35D, M36I, R41K, L63FS, H69K, L89M | CRF01_AE |
| KC18 | KC18PROT | FJ531955 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| KC20 | KC20PROT | FJ531957 | None | | | | R8RP, I13V, I15V, L19LV, E35DY, M36I, R41K, Q61QH, L63LI, E65EK, H69K, L89M | CRF01_AE |
| KC21 | KC21PROT | FJ531958 | None | | | | I13V, G17E, K20R, M36I, L63C, H69K, L89M, I93L | CRF01_AE |
| KC22 | KC22PROT | FJ531959 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| KC24 | KC24PROT | FJ531961 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| KC25 | KC25PROT | FJ531962 | None | | | | L10I, I13V, M36I, R41K, L63S, H69K, K70R, I72V, L89M | CRF01_AE |
| KC28 | KC28PROT | FJ531965 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| KC29 | KC29PROT | FJ531966 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| KC30 | KC30PROT | FJ531967 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| KC31 | KC31PROT | FJ531968 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| KC32 | KC32PROT | FJ531969 | None | | | | I13V, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| KC34 | KC34PROT | FJ531970 | None | | | | I13V, K20R, M36I, R41K, L63S, H69K, I72V, L89M | CRF01_AE |
| KC42 | KC42PROT | FJ531976 | None | | | | L10I, I13V, M36I, R41K, L63C, L89M | CRF01_AE |
| KC43 | KC43PROT | FJ531977 | None | | | | I13V, K20KR, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| KC45 | KC45PROT | FJ531979 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| KC46 | KC46PROT | FJ531980 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| KC48 | KC48PROT | FJ531982 | None | | | L33LI | L10I, I13V, E35D, M36I, R41K, H69K, A71AV, L89M, F99L | CRF01_AE |
| KC49 | KC49PROT | FJ531983 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| KC50 | KC50PROT | FJ531984 | None | | | | L5LF, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| KC51 | KC51PROT | FJ531985 | None | | | | L5LF, I13V, E35EK, M36I, R41K, R57K, H69K, K70R, V75VG, V82I, L89M | CRF01_AE |
| KC52 | KC52PROT | FJ531986 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| KC56 | KC56PROT | FJ531989 | None | | | | L10LV, I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| KC57 | KC57PROT | FJ531990 | None | | | | I13V, K20I, M36I, R41K, H69K, K70R, I72IV, V82I, L89M | CRF01_AE |
| KC58 | KC58PROT | FJ531991 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| KC59 | KC59PROT | FJ531992 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| KC61 | KC61PROT | FJ531993 | None | | | | L5LF, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| KC62 | KC62PROT | FJ531994 | None | | | | I13V, K14R, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| KC63 | KC63PROT | FJ531995 | None | | | | I13V, I15V, E35D, M36I, R41K, I62V, L63P, H69K, V82VI, L89M, F99FL | CRF01_AE |
| KC66 | KC66PROT | FJ531997 | None | | | V11I | I13V, E35D, M36I, N37D, H69K, L89M | CRF01_AE |
| KC67 | KC67PROT | FJ531998 | None | | | | I13V, I15IV, E35DG, M36I, R41K, H69K, I72L, L89M | CRF01_AE |
Sahbandar (2009) | IDJKT070 | IDJKT070 | AB468573 | None | | | | I13V, K20R, E35D, M36I, R41K, K45R, H69K, V77I, L89M, L97I | CRF01_AE |
Tu (2009) | 5 | PBMC5 | EU518254 | None | | | | I13V, E35D, M36I, R41K, H69R, L89M, I93L | CRF01_AE |
| | plasma5 | EU518303 | None | | | | I13V, E35D, M36I, R41K, H69R, L89M, I93L | CRF01_AE |
| 37 | PBMC37 | EU518279 | None | | | L33F | L10V, I13V, M36V, P39Q, R41K, H69K, L89M, I93V | CRF01_AE |
| | plasma37 | EU518328 | None | | | L33F | L10V, I13V, M36V, P39Q, R41K, H69K, L89M, I93V | CRF01_AE |
Vercauteren (2009) | pt2156 | 272597461 | GQ398868 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt2134 | 436137206 | GQ398890 | None | | | | I13V, E35D, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93L | CRF01_AE |
| pt2087 | 790272399 | GQ398937 | None | | | | I13V, K14KR, E35D, M36I, R41K, D60E, L63P, H69K, K70R, I72IT, L89M | CRF01_AE |
| pt2072 | 886924455 | GQ398952 | None | | | | I13V, K14R, I15IV, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt2071 | 888664425 | GQ398953 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| pt2009 | 1287777795 | GQ399015 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1970 | 1448749787 | GQ399054 | None | | | | L10IM, I13V, E35D, M36I, R41K, C67Y, H69K, K70KR, I72V, L89M | CRF01_AE |
| pt1960 | 1520485721 | GQ399064 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| pt1853 | 2146907658 | GQ399171 | None | | | | I13V, M36I, R41K, H69K, L89I | CRF01_AE |
| pt1807 | 2481643443 | GQ399217 | None | | | | L10V, I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| pt1803 | 2493546002 | GQ399221 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1760 | 2812352826 | GQ399264 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| pt1748 | 2911024973 | GQ399276 | None | | | L33LF | I13V, M36I, R41K, L63LP, H69K, L89M, I93L | CRF01_AE |
| pt1681 | 3242820501 | GQ399343 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1672 | 3311242754 | GQ399352 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| pt1651 | 3439403171 | GQ399373 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| pt1640 | 3541430468 | GQ399384 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1595 | 3787672902 | GQ399429 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| pt1586 | 3841341890 | GQ399438 | None | | | | I13V, I15V, M36I, R41K, L63V, H69K, V82I, L89M | CRF01_AE |
| pt1572 | 3906779451 | GQ399452 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M | CRF01_AE |
| pt1546 | 3jw3yAJwzx | GQ399478 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1514 | 4188161655 | GQ399510 | None | | | | L10I, T12TI, I13V, G16GE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1462 | 4507760777 | GQ399562 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| pt1453 | 4546116369 | GQ399571 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1417 | 4760279859 | GQ399607 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1376 | 4IRHRhl7ZP | GQ399648 | None | | | | I13V, E35D, M36I, R41K, I62IV, L63PS, H69K, T74TS, L89M | CRF01_AE |
| pt1339 | 5208160299 | GQ399685 | None | | | | I13V, K14R, I15V, M36I, R41K, D60E, L63P, C67Y, H69K, V82I, L89M, I93L | CRF01_AE |
| pt1297 | 5430375436 | GQ399727 | None | | | | L10I, I13V, K14R, E35D, M36I, R41K, H69K, V82I, L89M, L97I | CRF01_AE |
| pt1192 | 6030127748 | GQ399832 | None | | | | I13V, I15IV, E35D, M36I, R41K, R57K, H69K, K70KR, L89M | CRF01_AE |
| pt1160 | 6238054218 | GQ399864 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70KR, I72IV, L89M | CRF01_AE |
| pt1145 | 6282149296 | GQ399879 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| pt1118 | 6510659522 | GQ399906 | None | | | | I13V, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| pt1030 | 7017153593 | GQ399994 | None | | | | I13V, I15V, G16E, M36I, R41K, H69K, L89M | CRF01_AE |
| pt1001 | 7209704423 | GQ400023 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt997 | 7235844899 | GQ400027 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| pt990 | 7326852698 | GQ400034 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| pt819 | 8269843048 | GQ400205 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt804 | 8348148138 | GQ400220 | None | | | | I13V, E35D, M36I, R41K, D60E, I62V, L63P, H69K, L89M | CRF01_AE |
| pt679 | 8Df8tOm8ng | GQ400345 | None | | | | I13V, E35D, M36I, R41K, R57K, L63V, I64L, H69K, K70R, I72V, L89M | CRF01_AE |
| pt622 | 9277357784 | GQ400402 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| pt620 | 9280081964 | GQ400404 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| pt503 | 9904009115 | GQ400521 | None | | | | I13V, G16GE, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| pt465 | AoEg2Evi8m | GQ400559 | None | | | | I13V, G16E, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| pt393 | G7D0oKdDK8 | GQ400631 | None | | | | I13V, I15V, K20KR, E35D, M36I, N37D, R41RK, L63LF, H69K, L89M | CRF01_AE |
| pt392 | g8EJE9wviu | GQ400632 | None | | | | I13V, E35D, M36I, R41K, E65D, H69K, L89M | CRF01_AE |
| pt377 | gskinluLfh | GQ400647 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt375 | gtHKAHTyyV | GQ400649 | None | | | | L10LI, I13V, E35D, M36I, R41K, I62IV, L63HP, H69K, I72V, L89IM | CRF01_AE |
| pt357 | HvZMjO8ClE | GQ400667 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82VI, L89M | CRF01_AE |
| pt326 | jow3TbcW88 | GQ400698 | None | | | L33F | I13V, M36L, P39PT, R41K, H69K, L89M, I93V | CRF01_AE |
| pt315 | KER1TB7Wou | GQ400709 | None | | | | I13V, K14R, K20R, M36I, N37D, R41K, I64M, H69K, L89M | CRF01_AE |
| pt291 | Li2bOk211F | GQ400733 | None | | | | I13V, L19M, E35D, M36I, R41K, D60E, H69K, L89M | CRF01_AE |
| pt275 | m1w50EisMV | GQ400749 | None | | | | I13V, I15V, E35D, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
| pt262 | MtEEcRdta4 | GQ400762 | None | | | | L10I, I13V, K20I, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| pt238 | nWm6XBtAc6 | GQ400786 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| pt232 | oa7yWmwSeu | GQ400792 | None | | | | I13V, G16E, E35D, M36I, H69K, K70R, L89M | CRF01_AE |
| pt226 | okp6kkL1Ec | GQ400798 | None | | | | I13V, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| pt207 | PHHb74RisP | GQ400817 | None | | | | L10IV, I13V, K14KR, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt194 | pSTEv93yAo | GQ400830 | None | | | | L10I, I13V, E35D, M36I, R41K, L63P, H69K, V82VI, L89IM, I93IV | CRF01_AE |
| pt191 | PVUfYROa4v | GQ400833 | None | | | | I13V, I15IV, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt184 | qab6RBGd6g | GQ400840 | None | | | | I13V, G16A, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt172 | r2WwXWwQHt | GQ400852 | None | | | | I13V, I15IV, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt168 | rDdAVSdeXY | GQ400856 | None | | | | L10LV, I13V, G16GE, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| pt123 | TJEYY1UVsQ | GQ400901 | None | | | | I13V, K20R, E35DN, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| pt104 | Ulw8gwquRI | GQ400920 | None | | | | I13V, K20R, M36I, R41RT, L63LIRS, I64IV, H69K, K70KR, L89LM, I93IL | CRF01_AE |
| pt97 | uzTZcDw0Jo | GQ400927 | None | | | | I13V, K14R, I15V, Q18E, L33V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt71 | W2QrWEllGp | GQ400953 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| pt48 | XKy3Xx0wv4 | GQ400976 | None | | | | L10LI, T12A, I13V, K14KR, G16E, E35D, M36I, R41K, L63A, H69K, L89M, C95CG | CRF01_AE |
| pt45 | xRhWu7dGlW | GQ400979 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| pt40 | Y4c4OC8AQS | GQ400984 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
Yebra (2009) | SP42-303556 | SP42-303556 | EU342808 | None | | | | I13V, L19I, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Bonura (2010) | 1193_88 | 1193_88 | GU969548 | None | | | V11I | L10V, T12A, I13V, G16E, K20I, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
Castelbranco (2010) | 090052A | 090052A | HM357753 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Castro (2010) | PHI-5 | PHI-5 | GQ131600 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Chin (2010) | C066 | C066 | GQ290704 | None | | | | I13V, G17E, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| C074 | C074 | GQ290707 | None | | | | I13V, G16A, L19M, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| C087 | C087 | GQ290709 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| C102 | C102 | GQ290710 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C181 | C181 | GQ290718 | None | | | | L10V, I13V, K14R, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| C182 | C182 | GQ290719 | None | | | | L10I, I13V, E35D, M36I, R41K, L63T, H69K, L89M, L97I | CRF01_AE |
| K219 | K219 | GQ290740 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| K234 | K234 | GQ290742 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Djoko (2010) | 638 | CD4292 | FR666638 | None | | | | L10V, I13V, K14R, G16E, E35ED, M36I, N37EK, L63T, I64L, H69K, L89M | CRF01_AE |
| 639 | CD1425 | FR666639 | None | | | | I13V, M36I, R41K, H69K, L89IM | CRF01_AE |
| 651 | CD0335 | FR666651 | None | | | | I13V, K14KR, G16A, M36I, R41K, H69K, L89M | CRF01_AE |
| 683 | CD4078 | FR666683 | None | | | | L10I, I13V, G17E, E35D, M36L, R57RK, L63T, C67F, H69K, I72IV, L89M | CRF01_AE |
Djoko (2010) | GQ346 | 08GQ346 | FN557311 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Han (2010) | LN108 | LN108 | FJ531383 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN087 | LN087 | FJ531405 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN092 | LN092 | FJ531407 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN105 | LN105 | FJ531409 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| LN109 | LN109 | FJ531411 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| LN111 | LN111 | FJ531412 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN112 | LN112 | FJ531413 | None | | | | I13V, L19M, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| LN113 | LN113 | FJ531414 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN114 | LN114 | FJ531415 | None | | | | I13V, G16A, L19M, E35D, M36I, R41K, R57K, L63P, H69K, L89M, I93L | CRF01_AE |
| LN115 | LN115 | FJ531416 | None | | | | I13V, E35D, M36I, R41K, I64IL, H69K, L89M | CRF01_AE |
| LN116 | LN116 | FJ531417 | None | | | | I13V, I15V, L19M, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| LN125 | LN125 | FJ531422 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN128 | LN128 | FJ531424 | None | | | | I13V, G16E, L19I, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| LN132 | LN132 | FJ531425 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, V82I, L89M, I93L | CRF01_AE |
| LN138 | LN138 | FJ531428 | None | | | L33F | I13V, G16A, L19M, E35D, M36I, R41K, G68E, H69K, K70R, L89M, I93L | CRF01_AE |
| LN154 | LN154 | FJ531430 | None | | | | L10I, I13V, L19M, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| LN178 | LN178 | FJ531433 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN179 | LN179 | FJ531434 | None | | | | I13V, G16E, L19V, E35D, M36I, R41K, L63V, H69K, K70R, L89M, I93L | CRF01_AE |
| LN184 | LN184 | FJ531435 | None | | | | I13V, K14KN, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN187 | LN187 | FJ531436 | None | | | | I13V, L19M, E35ED, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| LN191 | LN191 | FJ531438 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| LN194 | LN194 | FJ531439 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN197 | LN197 | FJ531440 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| SY023 | SY023 | FJ531442 | None | | | | I13V, L19M, K20R, E35D, M36I, R41K, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| LN144 | LN144 | FJ531446 | None | | | | T12P, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN106 | LN106 | FJ531447 | None | | | | I13V, G16E, L19V, E35D, M36I, R41K, L63V, H69K, K70R, L89M, I93L | CRF01_AE |
| LN143 | LN143 | FJ531448 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN152 | LN152 | FJ531454 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| LN157 | LN157 | FJ531455 | None | | | | I13V, L19M, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| LN158 | LN158 | FJ531456 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LN202 | LN202 | FJ531458 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
Hattori (2010) | C05-2069060 | C05-2069060 | AB867758 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, L63P, H69K, L89M | CRF01_AE |
| A05-201031 | A05-201031 | AB863756 | None | | | | I13V, I15V, E35D, M36I, R41K, E65EQ, H69K, L89M | CRF01_AE |
| C05-51110263 | C05-51110263 | AB864670 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| C06-2066282 | C06-2066282 | AB864020 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| C07-20672254 | C07-20672254 | AB864074 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| C06-51110442 | C06-51110442 | AB864849 | None | | | | L10V, I13V, K14R, E35D, M36I, N37D, R41K, R57K, D60E, H69K, L89M | CRF01_AE |
| C07-2069144 | C07-2069144 | AB868135 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99FL | CRF01_AE |
| C06-6000C116 | C06-6000C116 | AB865819 | None | | | | I13V, I15V, D29A, E35D, M36I, R41K, R57K, L63S, H69K, V82I, L89M, T91V, I93L | CRF01_AE |
| C05-51110236 | C05-51110236 | AB864643 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M, T91V, I93L | CRF01_AE |
| C04-20671366 | C04-20671366 | AB863983 | None | | | | T12P, I13V, K20R, E35D, M36I, R41K, R57K, H69K, V77I, L89M, I93L, L97I | CRF01_AE |
| C07-2066348 | C07-2066348 | AB864085 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C06-2066315 | C06-2066315 | AB864045 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| C05-2069005 | C05-2069005 | AB867653 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C05-504601 | C05-504601 | AB864580 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| C06-51110331 | C06-51110331 | AB864738 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C07-504604 | C07-504604 | AB864606 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| C07-2066336 | C07-2066336 | AB864078 | None | | | L33F | I13V, M36I, R41K, L63I, H69K, L89M, I93L | CRF01_AE |
| C06-2066307 | C06-2066307 | AB864040 | None | | | | I13V, G17E, E35D, M36I, R41K, L63P, H69K, L89M, F99L | CRF01_AE |
| C06-51110418 | C06-51110418 | AB864825 | None | | | | L10I, I13V, I15V, G16E, E35D, M36I, P39T, R41K, H69K, L89M | CRF01_AE |
| C05-2069062 | C05-2069062 | AB867762 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, N37D, R41K, K43R, D60E, L63S, H69K, L89M, I93L | CRF01_AE |
| C04-2069028 | C04-2069028 | AB867600 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| C06-2066297 | C06-2066297 | AB864032 | None | | | L33F | L10LV, I13V, M36I, N37ND, R41K, L63P, H69K, L89M, I93V | CRF01_AE |
| C05-51110240 | C05-51110240 | AB864647 | None | | | | I13V, I15V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C06-2066288 | C06-2066288 | AB864026 | None | | | | I13V, K20R, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| C05-206804 | C05-206804 | AB864591 | None | | | | I13V, K14KR, G16GA, E35D, M36I, R41K, K43R, L63P, H69K, K70R, L89M | CRF01_AE |
| B05-511030 | B05-511030 | AB863896 | None | | | | Q7R, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M, I93L, F99FL | CRF01_AE |
| C06-504607 | C06-504607 | AB864594 | None | | | | L10I, I13V, K14R, G16E, E35D, M36I, R41K, K43R, L63C, H69K, L89LM | CRF01_AE |
| C05-206802 | C05-206802 | AB864589 | None | | | | T12P, I13V, E35D, M36I, R41K, I62V, H69K, T74S, L89M | CRF01_AE |
| C05-2066256 | C05-2066256 | AB864005 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C06-2066290 | C06-2066290 | AB864028 | None | | | L33F | I13V, R41K, L63P, H69K, I72M, L89M, Q92E | CRF01_AE |
| A06-201043 | A06-201043 | AB863769 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C06-504608 | C06-504608 | AB864595 | None | | | | I13V, L33V, E35D, M36I, R41K, R57K, L63A, H69K, L89M | CRF01_AE |
| C05-51110324 | C05-51110324 | AB864731 | None | | | | L10I, I13V, E35D, M36I, R41K, K43R, R57K, L63P, L89M | CRF01_AE |
| A07-201056 | A07-201056 | AB863788 | None | | | | I13V, G16E, E35D, M36I, R41K, L63P, H69K, K70R, L89M, I93L | CRF01_AE |
| C07-51110456 | C07-51110456 | AB864863 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| C05-2066238 | C05-2066238 | AB863997 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C06-51110371 | C06-51110371 | AB864778 | None | | | | L10I, I13V, K20R, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| C07-504603 | C07-504603 | AB864605 | None | | | | I13V, I15V, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| C05-206801 | C05-206801 | AB864588 | None | | | | L10LI, I13V, E35D, M36I, R41K, C67S, H69K, K70KR, I85V, L89M | CRF01_AE |
| C07-2069157 | C07-2069157 | AB868148 | None | | | | L10I, I13V, E35D, M36I, R41K, C67G, H69K, L89M | CRF01_AE |
| C06-2066324 | C06-2066324 | AB864052 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C06-51110444 | C06-51110444 | AB864851 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, V77I, L89M | CRF01_AE |
| F05-1644 | F05-1644 | AB866434 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| E08-50910723 | E08-50910723 | AB865916 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89M | CRF01_AE |
| C08-6000C192 | C08-6000C192 | AB865845 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89IM, F99FL | CRF01_AE |
| C08-504601 | C08-504601 | AB864607 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| F05-5103165 | F05-5103165 | AB866412 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, H69K, I72V, L89M | CRF01_AE |
| C08-51110650 | C08-51110650 | AB865057 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| F07-20081084 | F07-20081084 | AB866468 | None | | | | L10V, T12A, I13V, G16E, E35D, M36I, R41K, Q61E, H69K, L89M | CRF01_AE |
| C08-2066382 | C08-2066382 | AB864109 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C08-51110785 | C08-51110785 | AB865191 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| F08-5112167 | F08-5112167 | AB866798 | None | | | | L10IV, I13V, G16GE, E35D, M36I, R41K, C67CG, H69K, L89M, T91V | CRF01_AE |
| C07-51110553 | C07-51110553 | AB864960 | None | | | | I13V, E35D, M36I, R41K, L63A, H69K, K70R, L89M | CRF01_AE |
| D08-2031034 | D08-2031034 | AB865912 | None | | | L33F | T12P, I13V, M36I, N37ND, R41RK, L63P, C67S, H69K, K70R, L89M, I93L | CRF01_AE |
| F06-5112035 | F06-5112035 | AB866671 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| C07-51110565 | C07-51110565 | AB864972 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| D04-2031005 | D04-2031005 | AB865882 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| F06-5103199 | F06-5103199 | AB866445 | None | | | | I13V, G17E, K20R, M36I, R41K, I62IV, L63P, H69K, I72V, L89M | CRF01_AE |
| C08-20952484 | C08-20952484 | AB864149 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| F08-5112161 | F08-5112161 | AB866792 | None | | | | I13V, G16E, M36I, P39T, R41K, R57K, I62K, H69K, L89M | CRF01_AE |
| F08-5112124 | F08-5112124 | AB866760 | None | | | | L10V, I13V, I15IV, G17E, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| C08-6000C176 | C08-6000C176 | AB865839 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
| E08-50910722 | E08-50910722 | AB865914 | None | | | | L10I, I13V, G16E, Q18QL, E35D, M36I, R41K, R57RK, H69K, K70R, L89M | CRF01_AE |
| C07-51110476 | C07-51110476 | AB864883 | None | | | | L10V, T12A, I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| C08-2069064 | C08-2069064 | AB868216 | None | | | | I13V, E35D, M36I, R41K, Y59F, L63P, H69K, L89M | CRF01_AE |
| F07-20702 | F07-20702 | AB866459 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| F08-5112201 | F08-5112201 | AB866832 | None | | | | I13V, K14KR, E35D, M36I, R41K, L63P, H69K, V77VI, L89M | CRF01_AE |
| F08-5112137 | F08-5112137 | AB866773 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| C08-51110648 | C08-51110648 | AB865055 | None | | | | I13V, E35D, M36I, R41K, R57K, I64M, H69K, L89M | CRF01_AE |
| C08-51110635 | C08-51110635 | AB865042 | None | | | | L10I, I13V, I15V, E35D, M36I, N37D, R41K, L63V, H69K, L89M | CRF01_AE |
| E08-50910797 | E08-50910797 | AB865975 | None | | | | I13V, G16GE, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| F07-20701 | F07-20701 | AB866458 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, R57RK, I62V, H69K, V77I, L89M | CRF01_AE |
| C08-2066416 | C08-2066416 | AB864131 | None | | | | I13V, I15V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| F08-20081264 | F08-20081264 | AB866480 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, D60E, H69K, K70R, L89M | CRF01_AE |
| C08-51110708 | C08-51110708 | AB865115 | None | | | | I13V, E35D, M36I, R41K, Y59F, L63P, H69K, L89M | CRF01_AE |
| C07-51110604 | C07-51110604 | AB865011 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| C07-51110482 | C07-51110482 | AB864889 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, I72M, L89M | CRF01_AE |
| F06-5112057 | F06-5112057 | AB866693 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| C07-51110621 | C07-51110621 | AB865028 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| C08-2066430 | C08-2066430 | AB864139 | None | | | | I13V, I15V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| C08-51110782 | C08-51110782 | AB865188 | None | | | | L10I, I13V, E35D, M36I, R41K, L63V, H69K, L89M, L97I | CRF01_AE |
| E08-50910790 | E08-50910790 | AB865970 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, K70KR, L89M | CRF01_AE |
| C08-504604 | C08-504604 | AB864610 | None | | | | L10I, I13V, E35D, M36I, R41K, L63A, H69K, K70R, L89M | CRF01_AE |
| C08-6000C177 | C08-6000C177 | AB865840 | None | | | | I13V, K20R, E35D, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
| C08-51110753 | C08-51110753 | AB865160 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| F08-5112145 | F08-5112145 | AB866781 | None | | | | I13V, G16E, E35D, M36L, P39T, D60E, L63P, H69K, L89I, F99L | CRF01_AE |
| C08-51110721 | C08-51110721 | AB865128 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| C07-51110576 | C07-51110576 | AB864983 | None | | | | I13V, E35D, M36I, R41K, H69K, K70Q, I72T, L89M | CRF01_AE |
| F06-5112056 | F06-5112056 | AB866692 | None | | | | I13V, E35D, M36I, L38W, R41K, I62V, L63P, H69K, I72V, L89M | CRF01_AE |
Ndembi (2010) | DT3282_05_P1 | 3282 | GQ409614 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, K45R, R57K, L63P, H69K, K70R, L89M | CRF01_AE |
Phan (2010) | ND06 | ND06 | AB519452 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND08 | ND08 | AB519453 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND11 | ND11 | AB519455 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M, T91V | CRF01_AE |
| ND14 | ND14 | AB519456 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND22 | ND22 | AB519458 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND23 | ND23 | AB519459 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, Q61E, H69K, K70R, V82I, L89M | CRF01_AE |
| ND26 | ND26 | AB519461 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63F, H69K, K70R, L89M | CRF01_AE |
| ND29 | ND29 | AB519462 | None | | | | L10I, I13V, E35D, M36I, N37D, R41K, H69K, V82I, L89M | CRF01_AE |
| ND30 | ND30 | AB519463 | None | | | | I13V, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| ND38 | ND38 | AB519464 | None | | | | I13V, G16E, K20R, M36L, R41K, L63F, H69K, L89M | CRF01_AE |
| ND39 | ND39 | AB519465 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND40 | ND40 | AB519466 | None | | | | L10M, I13V, G16E, E35D, M36I, R41K, D60E, Q61E, H69K, K70R, L89M, I93V | CRF01_AE |
| ND42 | ND42 | AB519468 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, V77VIL, L89M | CRF01_AE |
| ND43 | ND43 | AB519469 | None | | | | I13V, G16A, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND49 | ND49 | AB519471 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND50 | ND50 | AB519472 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O902 | O902 | AB519474 | None | | | | I13V, K14R, G16E, E35ED, M36I, R41K, K55KN, H69K, L89M | CRF01_AE |
| O903 | O903 | AB519475 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O908 | O908 | AB519479 | None | | | | I13V, G16E, K20I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O909 | O909 | AB519480 | None | | | | I13V, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| O910 | O910 | AB519481 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| O911 | O911 | AB519482 | None | | | | T12A, I13V, G16E, K20I, E35D, M36I, R41K, L63S, H69K, L89M, T91A | CRF01_AE |
| O912 | O912 | AB519483 | None | | | | L10I, I13V, G16E, K20R, E35D, M36I, R41K, L63C, H69K | CRF01_AE |
| O914 | O914 | AB519485 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O915 | O915 | AB519486 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O916 | O916 | AB519487 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O918 | O918 | AB519489 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| O920 | O920 | AB519491 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| O921 | O921 | AB519492 | None | | | | T12P, I13V, K14R, Q18H, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| O922 | O922 | AB519493 | None | | | | I13V, G16E, K20I, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| O923 | O923 | AB519494 | None | | | | L10I, I13V, K20I, M36I, R41K, H69K, K70R, V82I, L89M, F99L | CRF01_AE |
| O925 | O925 | AB519496 | None | | | | L10I, T12A, I13V, G16E, K20R, E35D, M36I, R41K, I62V, L63S, H69K, L89M | CRF01_AE |
| O926 | O926 | AB519497 | None | | | | T12P, I13V, K14R, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| O927 | O927 | AB519498 | None | | | | I13V, M36I, R41K, I62V, L63S, H69K, V82I, L89M | CRF01_AE |
| O928 | O928 | AB519499 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, R57K, L63P, H69K, L89M, I93IFLV | CRF01_AE |
| O929 | O929 | AB519500 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O930 | O930 | AB519501 | None | | | | I13V, K14R, G16A, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| O931 | O931 | AB519502 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| O932 | O932 | AB519503 | None | | | | I13V, I15V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| O933 | O933 | AB519504 | None | | | | L10I, I13V, M36I, R41K, L63P, H69K | CRF01_AE |
| O936 | O936 | AB519507 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O937 | O937 | AB519508 | None | | | | L10I, I13V, I15V, E35D, M36I, N37D, R41K, H69Q, K70R, L89M | CRF01_AE |
| O938 | O938 | AB519509 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O939 | O939 | AB519510 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| O942 | O942 | AB519512 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89I | CRF01_AE |
| O944 | O944 | AB519514 | None | | | | I13V, G16E, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| O946 | O946 | AB519516 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K | CRF01_AE |
| O947 | O947 | AB519517 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, P79D, L89M | CRF01_AE |
| O948 | O948 | AB519518 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O949 | O949 | AB519519 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| O950 | O950 | AB519520 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| O951 | O951 | AB519521 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| O952 | O952 | AB519522 | None | | | | I13V, G16A, M36I, R41K, H69K, L89M | CRF01_AE |
| NB02 | NB02 | AB519524 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB03 | NB03 | AB519525 | None | | | | I13V, E35D, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
| NB05 | NB05 | AB519526 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB08 | NB08 | AB519527 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NB09 | NB09 | AB519528 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, K70R, L89M | CRF01_AE |
| NB10 | NB10 | AB519529 | None | | | | I13V, K14R, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NB12 | NB12 | AB519530 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M, T91A | CRF01_AE |
| NB23 | NB23 | AB519535 | None | | | | I13V, K20R, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
| NB24 | NB24 | AB519536 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, K70R, V77I, L89M | CRF01_AE |
| NB26 | NB26 | AB519538 | None | | | | I13V, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NB30 | NB30 | AB519540 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB31 | NB31 | AB519541 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| NB33 | NB33 | AB519542 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB37 | NB37 | AB519545 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NB40 | NB40 | AB519547 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB42 | NB42 | AB519548 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NB43 | NB43 | AB519549 | None | | | | I13V, M36I, R41K, I62V, L63P, H69K, L89M | CRF01_AE |
| NB44 | NB44 | AB519550 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| NB45 | NB45 | AB519551 | None | | | | I13V, G16E, E35D, M36I, R41K, D60E, I62V, H69K, L89M | CRF01_AE |
| NB46 | NB46 | AB519552 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| NB47 | NB47 | AB519553 | None | | | | I13V, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| NB48 | NB48 | AB519554 | None | | | | I13V, E35D, M36I, N37D, R41K, K43R, L63R, H69K, L89M | CRF01_AE |
| NB49 | NB49 | AB519555 | None | | | | I13V, I15V, G16E, E35D, M36I, N37D, R41K, K43R, H69K, I72V, L89M | CRF01_AE |
| NB56 | NB56 | AB519557 | None | | | L33F | I13V, M36I, R41K, E65D, H69K, L89M, I93V | CRF01_AE |
| AH01 | AH01 | AB519558 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| AH03 | AH03 | AB519560 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH05 | AH05 | AB519562 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH06 | AH06 | AB519563 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH07 | AH07 | AB519564 | None | | | | I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| AH10 | AH10 | AB519566 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, H69K, L89M, Q92R | CRF01_AE |
| AH11 | AH11 | AB519567 | None | | | | I13V, G16E, E35D, M36I, P39T, R41K, K45R, H69K, K70R, I72V, L89M | CRF01_AE |
| AH13 | AH13 | AB519568 | None | | | | R8Q, I13V, E35D, M36I, R41K, D60E, H69K, L89M, I93L | CRF01_AE |
| AH15 | AH15 | AB519569 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| AH18 | AH18 | AB519570 | None | | | | L10I, I13V, M36I, L38LMV, R41K, H69K, L89I | CRF01_AE |
| AH19 | AH19 | AB519571 | None | | | | I13V, K14R, M36I, R41K, L63P, H69K, V82I, L89M, I93L | CRF01_AE |
| AH22 | AH22 | AB519572 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH23 | AH23 | AB519573 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH24 | AH24 | AB519574 | None | | | | I13V, E35D, M36I, R41K, R57K, L63S, H69K, L89M | CRF01_AE |
| AH25 | AH25 | AB519575 | None | | | | I13V, E35D, M36I, R41K, R57K, L63S, H69K, L89M | CRF01_AE |
| AH26 | AH26 | AB519576 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH27 | AH27 | AB519577 | None | | | | I13V, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| AH28 | AH28 | AB519578 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| AH30 | AH30 | AB519579 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH31 | AH31 | AB519580 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| AH33 | AH33 | AB519582 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| AH34 | AH34 | AB519583 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| AH36 | AH36 | AB519585 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH37 | AH37 | AB519586 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH40 | AH40 | AB519587 | None | | | V11I | I13V, G16E, K20R, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| AH41 | AH41 | AB519588 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH43 | AH43 | AB519590 | None | | | | T12P, I13V, K14R, G16E, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| AH45 | AH45 | AB519591 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH46 | AH46 | AB519592 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| AH48 | AH48 | AB519594 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AH49 | AH49 | AB519595 | None | | | | I13V, K20R, M36I, N37D, R41K, K43R, Q61E, L63P, H69K, L89M, I93L | CRF01_AE |
| ND07 | ND07 | AB519596 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| ND09 | ND09 | AB519597 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72T, L89I | CRF01_AE |
| ND13 | ND13 | AB519598 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| ND17 | ND17 | AB519599 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND32 | ND32 | AB519601 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND34 | ND34 | AB519603 | None | | | | L10I, I13V, G16E, M36I, R41K, H69K, L89I | CRF01_AE |
| ND44 | ND44 | AB519604 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND45 | ND45 | AB519605 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| ND48 | ND48 | AB519606 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB04 | NB04 | AB519607 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| NB06 | NB06 | AB519608 | None | | | | I13V, G16E, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| NB07 | NB07 | AB519609 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, V77I, L89M | CRF01_AE |
| NB11 | NB11 | AB519610 | None | | | G48R | I13V, G16E, E35D, M36I, R41K, C67Y, H69K, L89M | CRF01_AE |
| NB13 | NB13 | AB519611 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| NB22 | NB22 | AB519614 | None | | | | I13V, G16A, M36I, R41K, H69K, L89M | CRF01_AE |
| NB34 | NB34 | AB519616 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB39 | NB39 | AB519617 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| NB51 | NB51 | AB519620 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| AH16 | AH16 | AB519622 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| AH38 | AH38 | AB519624 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Sanders-Buell (2010) | 569M | 569M | GQ477441 | None | | | | L10I, T12P, I13V, L19I, E35D, M36I, R41K, C67W, H69K, L89M | CRF01_AE |
Soares (2010) | CM04_089 | CM04_089 | GU366141 | None | | | | L10V, I13V, K20I, L33V, E35N, M36I, N37D, R41K, L63P, G68E, H69R, V77I, L89M | CRF01_AE |
| CM04_093 | CM04_093 | GU366142 | None | | | | L10I, I13V, K20R, E35D, M36I, N37D, R41K, L63S, C67S, H69K, L89M | CRF01_AE |
| CM04_095 | CM04_095 | GU366143 | None | | | | I13V, G16A, E35N, M36I, N37D, R41K, R57K, D60E, H69K, L89M | CRF01_AE |
| CM02_019 | CM02_019 | GU366149 | None | | | | L10V, I13V, I15V, L19I, E35N, M36I, N37D, R41K, K43R, H69K, L89M | CRF01_AE |
Tovanabutra (2010) | KECst_028 | KECst_028 | FJ623479 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| KECst_015 | KECst_015 | FJ623490 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, H69N, I72L, L89M | CRF01_AE |
von Wyl (2010) | 4798588 | 4798588 | GQ848140 | None | | | | L10I, I13V, G16GE, K20R, E35D, M36I, R41K, D60DE, L63PS, H69K, L89M, I93LV | CRF01_AE |
Zhang (2010) | 06112 | CNsd06112 | GQ443552 | None | | | | I13V, K20R, M36I, R41K, L63LP, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| 05176 | CNsd05176 | GQ443561 | None | | | | I13V, E35D, M36I, R41K, R57K, L63LP, H69K, L89M | CRF01_AE |
| 05178 | CNsd05178 | GQ443562 | None | | | L33F | I13V, E35D, M36I, R41K, L63LP, H69K, K70KR, L89M, I93V | CRF01_AE |
| 05179 | CNsd05179 | GQ443563 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 06121 | CNsd06121 | GQ443567 | None | | | | I13V, E35D, M36V, R41K, I62V, H69K, K70R, V82I, L89M, F99L | CRF01_AE |
| 0691 | CNsd0691 | GQ443575 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 0525 | CNsd0525 | GQ443579 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, K70KR, V82I, L89M, F99L | CRF01_AE |
| 06149 | CNsd06149 | GQ443581 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, V82I, L89M, F99L | CRF01_AE |
| 06178 | CNsd06178 | GQ443583 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 06179 | CNsd06179 | GQ443584 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 06133 | CNsd06133 | GQ443586 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 06113 | CNsd06113 | GQ443588 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, K70R, L89M, I93L | CRF01_AE |
| 0695 | CNsd0695 | GQ443589 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 0604 | CNsd0604 | GQ443592 | None | | | | I13V, K20R, M36I, N37D, R41K, H69K, K70KR, I72IT, L89M | CRF01_AE |
| 06157 | CNsd06157 | GQ443594 | None | | | | I13V, G16E, K20I, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 06145 | CNsd06145 | GQ443597 | None | | | | I13V, G16A, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
Zolfo (2010) | A15293 | A15293BL | HM565616 | None | | | | I13V, E35ED, M36I, R41K, L63LV, H69K, L89M | CRF01_AE |
| | A15293M6 | HM565696 | None | | | | I13V, E35ED, M36I, R41K, L63LV, H69K, L89M | CRF01_AE |
| A14475 | A14475M12 | HM565664 | None | | | | I13V, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| A14968 | A14968M12 | HM565666 | None | | | | I13V, E35D, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
| A14446 | A14446M24 | HM565668 | None | | | | I13V, K14KR, I15V, E35D, M36I, R41K, L63LP, H69K, K70R, L89M | CRF01_AE |
| A15177 | A15177M12 | HM565670 | None | | | | I13V, M36I, L63P, H69K, L89M | CRF01_AE |
| A12855 | A12855M12 | HM565671 | None | | | | L10V, I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A13197 | A13197M30 | HM565672 | None | | | | L10I, I13V, E35D, M36I, R41K, D60E, Q61E, H69K, L89M | CRF01_AE |
| A14533 | A14533M18 | HM565673 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| A15349 | A15349M12 | HM565675 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A14757 | A14757M18 | HM565676 | None | | | | I13V, I15V, G16E, E35D, M36I, R41K, L63C, H69K | CRF01_AE |
| A14652 | A14652M18 | HM565678 | None | | | | L10I, I13V, K14R, G16E, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| A13955 | A13955M18 | HM565679 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| | A13955M24 | HM565629 | None | | | | L10I, I13V, I15V, E35D, M36I, R41K, I62IV, H69K, L89M, L97I | CRF01_AE |
| A15195 | A15195M12 | HM565681 | None | | | | I13V, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| A14006 | A14006M24 | HM565682 | None | | | L10FV | I13V, G16E, E35D, M36I, N37NI, R41K, H69K, K70KR, L89M | CRF01_AE |
| A13768 | A13768M24 | HM565683 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| A15056 | A15056M12 | HM565684 | None | | | | L10V, I13V, G16E, K20R, M36I, R41K, L63S, H69K | CRF01_AE |
| A15615 | A15615M6 | HM565687 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, Q61E, H69K, K70R, L89M | CRF01_AE |
| | A15615M12 | HM565614 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, Q61E, H69K, K70R, L89M | CRF01_AE |
| A15427 | A15427M6 | HM565689 | None | | | | I13V, K20R, E34EQ, M36I, R41K, R57RT, H69K, L89M | CRF01_AE |
| | A15427M12 | HM565615 | None | | | | I13V, K20R, D25DG, M36I, R41K, H69K, L89M | CRF01_AE |
| A15274 | A15274M12 | HM565690 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| | A15274M18 | HM565613 | None | | | | I13V, I15V, K20KR, E35D, M36I, R41K, H69K, V82I, L89M, L97LF | CRF01_AE |
| A15436 | A15436M6 | HM565691 | None | | | | T12TA, I13V, E35ED, M36I, R41K, I62IV, L63AS, H69K, L89M | CRF01_AE |
| A15294 | A15294M6 | HM565692 | None | | | | I13V, E35D, M36I, R41K, H69K, P79PS, L89M | CRF01_AE |
| | A15294M12 | HM565618 | None | | | | I13V, E35D, M36I, R41K, H69K, P79PS, L89M | CRF01_AE |
| A15442 | A15442M6 | HM565693 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, L63C, H69K, K70R, L89M | CRF01_AE |
| A14643 | A14643M12 | HM565694 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| | A14643M18 | HM565617 | None | | | | L10LV, I13V, G16E, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| A15334 | A15334M6 | HM565695 | None | | | | I13V, I15V, M36IT, R41K, L63P, H69K, K70R, I72IV | CRF01_AE |
| A13748 | A13748M18 | HM565699 | None | | | | L10I, I13V, E35D, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
| | A13748M24 | HM565637 | None | | | | L10I, I13V, E35D, M36I, R41K, K55KR, L63T, H69K, L89M | CRF01_AE |
| A13412 | A13412M18 | HM565700 | None | | | | L10I, I13V, G16E, K20I, E35D, M36I, R41K, H69K, K70G, V77I, L89M | CRF01_AE |
| | A13412M24 | HM565661 | None | | | | L10I, I13V, G16E, K20I, E35DN, M36I, R41K, H69K, K70GR, V77I, L89M | CRF01_AE |
| A14971 | A14971M6 | HM565701 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| | A14971M12 | HM565620 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| A14888 | A14888M6 | HM565702 | None | | | | L10LI, I13V, M36I, R41K, H69KQ, V82VI, L89M | CRF01_AE |
| A14843 | A14843M6 | HM565703 | None | | | | I13V, L33LV, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | A14843M12 | HM565674 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A13655 | A13655M18 | HM565705 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A13861 | A13861M6 | HM565707 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | A13861M12 | HM565635 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A13143 | A13143M6 | HM565708 | None | | | | I13V, E35D, M36I, R41K, K45KR, H69K, K70R, I72IT, L89M | CRF01_AE |
| A14998 | A14998M6 | HM565709 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A14708 | A14708M6 | HM565710 | None | | | | I13V, E35D, M36I, R41K, K45R, L63LAPV, H69K, L89M | CRF01_AE |
| A14207 | A14207M12 | HM565711 | None | | | | L10I, I13V, I15IV, G16GE, E35D, M36I, R41K, H69K, K70KR, L89M, L97I | CRF01_AE |
| | A14207M18 | HM565651 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M, L97I | CRF01_AE |
| | A14207M24 | HM565650 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M, L97I | CRF01_AE |
| A14040 | A14040M18 | HM565712 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| | A14040M24 | HM565656 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| | A14040M30 | HM565655 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| A14549 | A14549M18 | HM565713 | None | | | | L10I, I13V, E35D, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
| A14437 | A14437RS | HM565714 | None | | | | L10I, I13V, G17E, K20R, E35ED, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| | A14437M18 | HM565625 | None | | | | L10LI, I13V, G17E, K20R, E35ED, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| A13712 | A13712RS | HM565715 | None | | | | I13V, M36I, R41RK, H69K, L89M | CRF01_AE |
| A13557 | A13557RS | HM565717 | None | | | | L10I, I13V, G16GE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | A13557M24 | HM565657 | None | | | | L10I, I13V, G16E, L19LP, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| | A13557M30 | HM565654 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| A12984 | A12984RS | HM565718 | None | | | | L10LI, I13V, E35D, M36I, R41K, I64IV, H69K, L89M | CRF01_AE |
| | A12984M12 | HM565638 | None | | | | L10LI, I13V, E35D, M36I, R41K, I64IV, H69K, L89M | CRF01_AE |
| A14109 | A14109RS | HM565720 | None | | | | I13V, E35D, M36I, K45R, R57K, L63T, H69K, L89M, T91V | CRF01_AE |
| | A14109M18 | HM565627 | None | | | | I13V, G16GE, E35D, M36I, K45R, R57K, L63T, H69K, L89M, T91V | CRF01_AE |
| A14438 | A14438RS | HM565721 | None | | | | I13V, G17E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| | A14438M18 | HM565647 | None | | | | I13V, G17E, E35D, M36IL, N37NS, R41K, L63C, H69K, L89M | CRF01_AE |
| | A14438M24 | HM565646 | None | | | | I13V, G17E, E35D, M36I, R41K, L63C, H69K, K70KR, L89M | CRF01_AE |
| A14477 | A14477RS | HM565723 | None | | | | I13V, G16A, M36I, R41K, H69K, L89M | CRF01_AE |
| | A14477M18 | HM565624 | None | | | | I13V, G16A, M36I, R41K, H69K, I85IT, L89M | CRF01_AE |
| A14515 | A14515RS | HM565724 | None | | | | I13V, G16E, M36I, R41K, H69K, I72M, L89M | CRF01_AE |
| | A14515M12 | HM565622 | None | | | | I13V, G16E, M36I, R41K, H69K, I72M, L89M | CRF01_AE |
| A14991 | A14991RS | HM565726 | None | | | | I13V, K20R, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
| A13910 | A13910RS | HM565727 | None | | | | L10I, I13V, G16GE, E35D, M36I, N37ND, R41K, L63I, H69K, L89M | CRF01_AE |
| | A13910M18 | HM565630 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63I, H69K, L89M | CRF01_AE |
| A14127 | A14127RS | HM565728 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | A14127M18 | HM565626 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A13472 | A13472RS | HM565729 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| | A13472M18 | HM565632 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A14435 | A14435M12 | HM565649 | None | | | | L10I, I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| | A14435M18 | HM565648 | None | | | | L10I, I13V, E35D, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| A12757 | A12757RS | HM565731 | None | | | | L10LI, I13V, G16GE, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| | A12757M24 | HM565643 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| A12500 | A12500RS | HM565732 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, K70R, L89M | CRF01_AE |
| | A12500M30 | HM565663 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, K70R, L89M | CRF01_AE |
| A14705 | A14705BL | HM565734 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| A14063 | A14063RS | HM565735 | None | | | | I13V, L19LM, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| | A14063M18 | HM565653 | None | | | | I13V, L19LM, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| | A14063M24 | HM565652 | None | | | | I13V, L19LM, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| A13530 | A13530RS | HM565736 | None | | | | I13V, K20R, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| | A13530M12 | HM565660 | None | | | | I13V, K20R, M36I, R41K, L63C, H69K, V82I, L89M, T91TI | CRF01_AE |
| | A13530M18 | HM565659 | None | | | | I13V, K20R, M36I, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| | A13530M24 | HM565658 | None | | | | I13V, K20R, M36I, N37NS, R41K, L63C, H69K, V82I, L89M | CRF01_AE |
| A14428 | A14428RS | HM565737 | None | | | | L10I, I13V, E35D, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
Aghokeng (2011) | HJ1668 | HJ1668 | JN639449 | None | | | | I13V, E35DN, M36I, N37D, R41K, R57RK, H69K, L89M | CRF01_AE |
| HJ1956 | HJ1956 | JN639450 | None | | | | L10I, I13V, I15V, K20I, E35N, M36I, N37D, R41K, L63Q, H69Q, L89M | CRF01_AE |
| HJ1866 | HJ1866 | JN639451 | None | | | | L10LI, I13V, K14KR, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| HJ1871 | HJ1871 | JN639452 | None | | | | I13V, L19I, K20I, E35N, M36I, N37DE, R41K, H69K, L89M | CRF01_AE |
| SK8011-PI | SK8011-PI | HQ864341 | None | | | | I13V, E35D, M36I, N37D, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| SK8034-PI | SK8034-PI | HQ864342 | None | | | | L10IV, I13V, K20KT, E35DN, M36L, N37D, R41K, R57K, L63P, H69K, L89M | CRF01_AE |
| SK7004-PI | SK7004-PI | HQ864344 | None | | | | I13V, K14KR, E35D, M36I, R41K, D60E, H69K, I72V, L89M, I93L | CRF01_AE |
Aghokeng (2011) | SK4003-M18 | SK4003-M18 | HQ864328 | None | | | | I13V, L19I, K20I, E35S, M36I, N37D, K43R, L63P, I64IM, H69K, L89M | CRF01_AE |
Bontell (2011) | Pat063 | 08.VL730Hs | HQ852853 | None | | | | L10I, I13V, K20KR, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat062 | 08.VL731Hs | HQ852854 | None | | | | I13V, K20R, M36I, N37D, R41K, L63H, H69K, K70R, L89M, I93L | CRF01_AE |
| Pat059 | 08.VL735Hs | HQ852857 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat058 | 08.VL737Hs | HQ852858 | None | | | | Q7R, I13V, E35ED, M36I, R41K, D60DE, H69K, V82VI, L89M, I93IL, L97LI | CRF01_AE |
| Pat057 | 08.VL740Hi | HQ852859 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| Pat056 | 08.VL744Hi | HQ852860 | None | | | | I13V, K20R, M36I, N37D, R41K, D60E, H69K, L89M | CRF01_AE |
| Pat054 | 08.VL762Hi | HQ852862 | None | | | | L10I, I13V, G16E, M36I, R41K, L63H, H69K, L89M, I93IL, L97I | CRF01_AE |
| Pat053 | 08.VL763Hs | HQ852863 | None | | | | I13V, G16E, K20KI, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat052 | 08.VL764Hi | HQ852864 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat050 | 08.VL766Hi | HQ852866 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, H69K, I72V, L89M, T91I | CRF01_AE |
| Pat048 | 08.VL768Hs | HQ852868 | None | | | | L10V, I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat047 | 08.VL770H | HQ852869 | None | | | | I13V, K20R, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| Pat046 | 08.VL771Hs | HQ852870 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat045 | 08.VL772Hs | HQ852871 | None | | | | L10I, I13V, G16E, L19LI, E35D, M36I, R41K, L63T, H69K, L89I | CRF01_AE |
| Pat044 | 08.VL773Hs | HQ852872 | None | | | | I13V, G16E, K20R, E35D, M36I, P39T, R41K, I62V, H69K, L89M | CRF01_AE |
| Pat042 | 08.VL776Hi | HQ852874 | None | | | | I13V, I15V, N37S, R41K, H69K, L89M | CRF01_AE |
| Pat041 | 08.VL777Hi | HQ852875 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat040 | 08.VL778Hi | HQ852876 | None | | | | I13V, K14R, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat039 | 08.VL779Ui | HQ852877 | None | | | | I13V, E35ED, M36I, R41K, E65EK, H69K, K70R, L89M | CRF01_AE |
| Pat038 | 08.VL782Ui | HQ852878 | None | | | | I13V, K20I, E35D, M36I, R41K, D60E, Q61E, L63P, H69K, V82I, L89M | CRF01_AE |
| Pat037 | 08.VL783Us | HQ852879 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat036 | 08.VL784Ui | HQ852880 | None | | | | I13V, G16E, Q18E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat035 | 08.VL786Us | HQ852881 | None | | | | L10V, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat034 | 08.VL787U | HQ852882 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| Pat032 | 08.VL789Us | HQ852884 | None | | | | L10I, I13V, M36I, R41K, L63Q, H69K, L89M | CRF01_AE |
| Pat031 | 09.VL790Yi | HQ852885 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat029 | 09.VL946Hi | HQ852887 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| Pat027 | 09.VL948Hi | HQ852889 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| Pat026 | 09.VL949Hs | HQ852890 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, V82I, L89M | CRF01_AE |
| Pat025 | 09.VL951Hi | HQ852891 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF01_AE |
| Pat024 | 09.VL952Hi | HQ852892 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| Pat023 | 09.VL953Hi | HQ852893 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat021 | 09.VL955H | HQ852895 | None | | | | L10LV, I13V, G16GE, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| Pat020 | 09.VL956Hi | HQ852896 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat019 | 09.VL957Hs | HQ852897 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat017 | 09.VL960Hs | HQ852899 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat016 | 09.VL963H | HQ852900 | None | | | | L10LI, I13V, E35D, M36I, N37D, R41K, H69K, K70R, L89IM | CRF01_AE |
| Pat015 | 09.VL967Hi | HQ852901 | None | | | | I13V, M36N, N37K, R41K, L63P, H69K, L89M | CRF01_AE |
| Pat014 | 09.VL968Hs | HQ852902 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat013 | 09.VL969Hi | HQ852903 | None | | | | I13V, M36I, R41K, Q61E, H69KR, L89M | CRF01_AE |
| Pat012 | 09.VL971Us | HQ852904 | None | | | | I13V, M36I, R41K, L63PS, I64V, H69K | CRF01_AE |
| Pat011 | 09.VL972U | HQ852905 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat010 | 09.VL973Us | HQ852906 | None | | | | L10LI, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat009 | 09.VL975Us | HQ852907 | None | | | | L10LI, I13V, E35D, M36I, N37D, R41K, H69K, K70R, L89IM | CRF01_AE |
| Pat007 | 09.VL978Ui | HQ852909 | None | | | | I13V, G16E, E35D, M36I, R41K, R57RK, H69K, K70KR, L89M | CRF01_AE |
| Pat004 | 09.VL984U | HQ852912 | None | | | | T12P, I13V, G16E, K20I, M36I, N37NT, P39L, R41K, L63Q, H69K, K70R, L89M | CRF01_AE |
| Pat002 | 09.VL986U | HQ852914 | None | | | | I13V, G16E, E35D, M36I, R41K, I62IV, H69K, K70R, V82VI, L89M | CRF01_AE |
| Pat001 | 09.VL987Us | HQ852915 | None | | | | L10V, I13V, I15V, G16A, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
Bunupuradah (2011) | 079-008-005 | 079-008-005Pr | | None | | | | L10V, I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 079-008-008 | 079-008-008Pr | | None | | | | L10V, T12P, I13V, I15V, G16E, E35D, M36I, R41K, R57K, Q61E, H69K, K70R, L89M | CRF01_AE |
| pt001 | pt001Pr | | None | | | | I13V, G16E, E35D, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
Charpentier (2011) | 11 | CP001554 | | None | | | | I13V, L19LI, E35D, M36I, R41K, L63P, H69K, I72IV, L89M | CRF01_AE |
| 33 | CP001621a | | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 67 | CP001369 | | None | | | | L10V, I13V, G16E, E35D, M36I, N37DE, R41K, L63Q, H69K, K70R, I72V, L89M | CRF01_AE |
| 128 | CP0011161 | | None | | | | L10V, I13V, G16E, E35D, M36I, P39PS, R41K, H69K, L89M | CRF01_AE |
| 133 | CP001227 | | None | | | | L10I, I13V, E35D, M36I, R41K, W42WR, L63T, I66IM, H69K, P79PH, L89M | CRF01_AE |
| 148 | CP001621b | | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 219 | CP001004 | | None | | | | I13V, E35D, M36I, R41K, K45R, I62V, L63P, G68E, H69R, L89M | CRF01_AE |
Charpentier (2011) | CR-10 | CR-10 | FJ688216 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Dean (2011) | IVVI0024 | IVVI0024 | JQ312330 | None | | | | I13V, G16E, E35D, M36I, R41K, I62IV, H69K, K70R, L89M | CRF01_AE |
| IVVI0034 | IVVI0034 | JQ312331 | None | | | | I13V, K20KR, E35D, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
| IVVI0042 | IVVI0042 | JQ312332 | None | | | | I13V, G16E, M36I, R41K, H69K, V82VI, L89IM, Q92K | CRF01_AE |
| IVVI0054 | IVVI0054 | JQ312334 | None | | | | I13V, G16E, E35D, M36I, R41K, K45R, L63LP, H69K, L89M | CRF01_AE |
| IVVI0058 | IVVI0058 | JQ312335 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI0073 | IVVI0073 | JQ312336 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| IVVI0075 | IVVI0075 | JQ312337 | None | | | | I13V, M36I, R41K, H69K, K70R, V82I, L89M | CRF01_AE |
| IVVI0100 | IVVI0100 | JQ312338 | None | | | | L10V, I13V, K14R, Q18H, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI0112 | IVVI0112 | JQ312339 | None | | | | I13V, G16E, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| IVVI0114 | IVVI0114 | JQ312340 | None | | | | I13V, K20R, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| IVVI0116 | IVVI0116 | JQ312341 | None | | | | I13V, E35D, M36I, N37D, R41K, R57K, H69K, L89M | CRF01_AE |
| IVVI0118 | IVVI0118 | JQ312342 | None | | | | I13V, M36I, R41K, D60E, H69K, L89M | CRF01_AE |
| IVVI0127 | IVVI0127 | JQ312344 | None | | | | I13V, E35D, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
| IVVI0130 | IVVI0130 | JQ312346 | None | | | | T12P, I13V, K14R, E35D, M36I, P39S, R41K, L63P, C67CY, H69K, L89M | CRF01_AE |
| IVVI0138 | IVVI0138 | JQ312347 | None | | | | L10V, I13V, Q18H, M36IT, R41K, H69K, L89M | CRF01_AE |
| IVVI0157 | IVVI0157 | JQ312350 | None | | | | I13V, E35ED, M36I, N37ND, R41K, H69K, L89M | CRF01_AE |
| IVVI0159 | IVVI0159 | JQ312351 | None | | | | I13V, G16E, K20R, M36I, N37D, R41K, L63PS, H69K, L89LM, I93L | CRF01_AE |
| IVVI0176 | IVVI0176 | JQ312354 | None | | | | L10V, I13V, Q18H, M36T, R41K, H69K, L89M | CRF01_AE |
| IVVI0186 | IVVI0186 | JQ312355 | None | | | | I13V, E35D, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
| IVVI0187 | IVVI0187 | JQ312356 | None | | | | I13V, G16E, M36I, R41K, H69K, V82VI, L89IM, Q92K | CRF01_AE |
| IVVI0193 | IVVI0193 | JQ312359 | None | | | | I13V, E35ED, M36I, G40GR, R41K, D60E, H69K, L89M | CRF01_AE |
| IVVI0259 | IVVI0259 | JQ312362 | None | | | | T12P, I13V, K14R, Q18H, E35D, M36I, P39S, R41K, L63T, H69K, V82VI, L89M | CRF01_AE |
| IVVI0287 | IVVI0287 | JQ312363 | None | | | | I13V, E35D, M36I, R41K, I62IV, H69K, L89M | CRF01_AE |
| IVVI0297 | IVVI0297 | JQ312364 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, V82VI, L89M | CRF01_AE |
| IVVI0312 | IVVI0312 | JQ312365 | None | | | | I13V, G16E, K20KR, E35D, M36I, R41K, L63G, H69K, L89M | CRF01_AE |
| IVVI0334 | IVVI0334 | JQ312366 | None | | | | I13V, G16E, K20KR, E35D, M36I, R41K, L63G, H69K, L89M | CRF01_AE |
| IVVI0337 | IVVI0337 | JQ312367 | None | | | | T12P, I13V, K14R, Q18H, E35D, M36I, P39S, R41K, L63T, H69K, L89M | CRF01_AE |
| IVVI0362 | IVVI0362 | JQ312369 | None | | | | L10I, I13V, K14R, Q18QH, E35ED, M36I, R41K, D60DE, L63LP, H69K, L89M | CRF01_AE |
| IVVI1862 | IVVI1862 | JQ312370 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89IM | CRF01_AE |
| IVVI1869 | IVVI1869 | JQ312371 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| IVVI1895 | IVVI1895 | JQ312372 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI1927 | IVVI1927 | JQ312373 | None | | | | L10I, I13V, K14KE, G16E, E35D, M36I, R41K, L63C, C67CY, H69K, L89M | CRF01_AE |
| IVVI1928 | IVVI1928 | JQ312374 | None | | | | L10I, I13V, K14KR, G16GE, E35D, M36I, R41K, L63C, E65ED, H69K, K70KR, L89M | CRF01_AE |
| IVVI1932 | IVVI1932 | JQ312375 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI1980 | IVVI1980 | JQ312378 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI1988 | IVVI1988 | JQ312379 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI1990 | IVVI1990 | JQ312380 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI2001 | IVVI2001 | JQ312381 | None | | | | L10LI, I13V, I15IV, E35ED, M36I, R41K, L63S, H69K, L89M | CRF01_AE |
| IVVI2003 | IVVI2003 | JQ312382 | None | | | | I13V, K14KR, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI2028 | IVVI2028 | JQ312383 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI2073 | IVVI2073 | JQ312385 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI2074 | IVVI2074 | JQ312386 | None | | | | I13V, G16GA, E35D, M36I, R41K, K45KR, R57RK, H69K, L89M | CRF01_AE |
| IVVI2077 | IVVI2077 | JQ312387 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI2123 | IVVI2123 | JQ312388 | None | | | | I13V, K20R, E35ED, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| IVVI2129 | IVVI2129 | JQ312389 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M, Q92QK, I93IL | CRF01_AE |
| IVVI2133 | IVVI2133 | JQ312390 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI3801 | IVVI3801 | JQ312394 | None | | | | I13V, D29DG, M36I, R41K, H69K, L89M | CRF01_AE |
| IVVI5295 | IVVI5295 | JQ312396 | None | | | | L10IV, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| IVVI7117 | IVVI7117 | JQ312404 | None | | | I84IM | I13V, G16A, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| IVVI7118 | IVVI7118 | JQ312405 | None | | | | I13V, G16AE, K20KR, E35D, M36I, N37ND, R41K, K45KR, H69K, K70KR, I72IR, L89M | CRF01_AE |
| IVVI7187 | IVVI7187 | JQ312408 | None | | | | I13V, G16A, M36I, N37D, R41K, H69K, K70R, L89IM, I93IL | CRF01_AE |
| IVVI7283 | IVVI7283 | JQ312415 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, R57K, G68GE, H69K, K70R, L89I | CRF01_AE |
| IVVI7324 | IVVI7324 | JQ312417 | None | | | | I13V, Q18QH, E35DN, M36I, N37D, R41K, I66IV, H69K, K70KR, L89M | CRF01_AE |
| IVVI7359 | IVVI7359 | JQ312418 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, K45R, L63P, H69K, K70R, L89M | CRF01_AE |
| IVVI7392 | IVVI7392 | JQ312420 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, R57K, G68GE, H69K, K70R, L89I | CRF01_AE |
El Annaz (2011) | 12087 | 12087 | HQ393311 | None | | | | I13V, K20R, E35D, M36I, N37D, P39Q, R41K, L63P, H69K, I72V, L89M, T91N | CRF01_AE |
Fokam (2011) | CIRCB-8845 | CIRCB-8845 | JQ796105 | None | | | | L10LI, I13V, K20R, E35D, M36I, N37D, R41K, R57RK, L63LP, H69K, I72IV, L89M | CRF01_AE |
| CIRCB-12497 | CIRCB-12497 | JQ796122 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CIRCB-7759 | CIRCB-7759 | JQ796153 | None | | | | R8RP, L10LI, I13V, L19LV, K20R, E21E*, E35D, M36I, N37D, R41K, H69K, L89M, L90LW | CRF01_AE |
| CIRCB-10536 | CIRCB-10536 | JQ796172 | None | | | | I13V, G16A, K20KR, E35D, M36I, N37D, R41K, E65D, H69K, V82VI, L89M | CRF01_AE |
| CIRCB-10552 | CIRCB-10552 | JQ796173 | None | | | | I13V, E35N, M36I, N37D, R41K, I62IV, L63PS, H69K, K70R, L89M | CRF01_AE |
Hamers (2011) | CP076301579 | CP076301579 | HQ993618 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076301718 | CP076301718 | HQ993711 | None | | | | L5X, L10V, I13V, E35D, M36I, R41K, D60E, Q61E, I62V, L63P, H69K, L89M | CRF01_AE |
| CP076302204 | CP076302204 | HQ993809 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076302318 | CP076302318 | HQ993860 | None | | | | I13V, E35D, M36I, R41K, I64IM, H69K, L89M | CRF01_AE |
| CP076304169 | CP076304169 | HQ993887 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076304174 | CP076304174 | HQ993890 | None | | | | L10I, I13V, I15IV, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| CP076303613 | CP076303613 | HQ994074 | None | | | | I13V, I15IV, E35ED, M36I, N37NDEK, R41RK, R57RK, L63LP, H69K, K70R, L89M | CRF01_AE |
| CP076305151 | CP076305151 | HQ994106 | None | | | | I13V, K20I, E35G, M36I, N37S, R41K, H69K, V77I, P79PS, L89M | CRF01_AE |
| CP076300740 | CP076300740 | HQ994930 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076301824 | CP076301824 | HQ994982 | None | | | | I13V, G16E, E35D, M36I, R57K, L63H, H69K, K70R, I72V, L89M | CRF01_AE |
| CP076302062 | CP076302062 | HQ995025 | None | | | | I13V, K20KI, M36I, N37ND, R41RK, L63P, G68GE, H69KR, L89IM | CRF01_AE |
| CP076302937 | CP076302937 | HQ995039 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076302966 | CP076302966 | HQ995052 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076302975 | CP076302975 | HQ995055 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076302994 | CP076302994 | HQ995066 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076303024 | CP076303024 | HQ995088 | None | | | | T12P, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076303025 | CP076303025 | HQ995089 | None | | | | L10V, I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076300882 | CP076300882 | HQ995135 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, L63P, H69K, K70R, L89M | CRF01_AE |
| CP076300890 | CP076300890 | HQ995139 | None | | | | I13V, M36I, R41K, L63T, I64M, H69K, L89M | CRF01_AE |
| CP076301833 | CP076301833 | HQ995166 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076301861 | CP076301861 | HQ995172 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076301991 | CP076301991 | HQ995177 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076303060 | CP076303060 | HQ995240 | None | | | | I13V, E35D, M36I, R41K, R57K, D60E, H69K, L89M | CRF01_AE |
| CP076303073 | CP076303073 | HQ995253 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076303091 | CP076303091 | HQ995268 | None | | | | I13V, E35D, M36I, R41K, K43R, R57K, H69K, L89M | CRF01_AE |
| CP076303097 | CP076303097 | HQ995273 | None | | | | L10V, I13V, K14R, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076303135 | CP076303135 | HQ995307 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| CP076300737 | CP076300737 | HQ995326 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, L63LP, H69K, L89M | CRF01_AE |
| CP076300755 | CP076300755 | HQ995331 | None | | | | I13V, I15IV, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076300792 | CP076300792 | HQ995356 | None | | | | T12S, I13V, L19I, E35D, M36I, R41K, R57K, L63P, H69K, L89M | CRF01_AE |
| CP076301900 | CP076301900 | HQ995379 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, I72IM, L89M | CRF01_AE |
| CP076301910 | CP076301910 | HQ995385 | None | | | L10F | I13V, E35D, M36I, R41K, R57K, Q58H, H69K, L89M | CRF01_AE |
| CP076301944 | CP076301944 | HQ995409 | None | | | | L10I, I13V, E35D, M36I, R41K, H69Q, L89M | CRF01_AE |
| CP076301960 | CP076301960 | HQ995424 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72IMV, L89M | CRF01_AE |
| CP076302081 | CP076302081 | HQ995464 | None | | | | I13V, L19M, K20R, E35D, M36I, R41K, R57K, H69K, T74TK, L89M, I93M | CRF01_AE |
| CP076302931 | CP076302931 | HQ995488 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
Kao (2011) | Pat379 | 21152 | HQ657661 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat338 | 26584 | HQ657702 | None | | | | I13V, I15V, L19M, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| Pat285 | 27003 | HQ657755 | None | | | | I13V, G16E, K20R, E35D, M36I, N37ND, R41K, R57RK, I62V, H69K, V77I, L89M | CRF01_AE |
| Pat250 | 27347 | HQ657790 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat191 | 35822 | HQ657849 | None | | | | I13V, L19M, E35D, M36I, R41K, K45R, L63LP, H69K, L89M | CRF01_AE |
| Pat183 | 35886 | HQ657857 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M, I93L | CRF01_AE |
| Pat159 | 36083 | HQ657881 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| Pat134 | 36250 | HQ657906 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| Pat130 | 36267 | HQ657910 | None | | | | L10V, I13V, G16E, E35D, M36I, N37K, R41K, L63C, H69K | CRF01_AE |
| Pat074 | 36544 | HQ657966 | None | | | | L10LIV, I13V, K14KR, K20KR, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat056 | 36568 | HQ657984 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat053 | 36599 | HQ657987 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| Pat050 | 36627 | HQ657990 | None | | | | L10V, I13V, G16E, M36I, R41K, K45R, L63H, H69K, K70R, L89M, I93L | CRF01_AE |
| Pat049 | 36628 | HQ657991 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| Pat048 | 36629 | HQ657992 | None | | | | I13V, I15IV, E35D, M36I, R41K, Q61E, H69K, L89M | CRF01_AE |
| Pat044 | 36636 | HQ657996 | None | | | | I13V, E35D, M36I, R41K, H69K, K70KR, I72V, I85IM, L89M | CRF01_AE |
Kasang (2011) | 2029 | 2029 | HM572381 | None | | | | I13V, L19I, E35D, M36I, R41K, R57K, D60E, H69K, K70R, L89M | CRF01_AE |
| 32646 | 32646 | HM572389 | None | | | | I13V, E35D, M36I, R41K, L63F, H69K, L89M | CRF01_AE |
| 1326 | 1326 | HM572420 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
Lazaro (2011) | AG-M2 | AG-M2 | HQ542613 | None | | | V11I | I13V, G16E, K20I, E35D, M36L, R41K, Q61E, H69K, K70R, L89M, I93L | CRF01_AE |
| AG-M4 | AG-M4 | HQ542615 | None | | | | I13V, I15V, E35D, M36I, R41K, I62IV, L63Q, H69K, L89M | CRF01_AE |
| AG-M9 | AG-M9 | HQ542619 | None | | | | W6WG, I13V, E35D, M36I, N37ND, R41RK, R57RK, H69K, V82I, L89M | CRF01_AE |
| AG-M17 | AG-M17 | HQ542627 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| VT-M9 | VT-M9 | HQ542638 | None | | | | I13V, E35D, M36IT, R41K, L63P, H69K, K70R, A71V, L89M, I93L | CRF01_AE |
| VT-M18 | VT-M18 | HQ542646 | None | | | | L10V, I13V, G16A, K20R, E35D, M36I, N37D, R41K, K43KR, L63C, H69K, K70KR, L89M | CRF01_AE |
| TG-M7 | TG-M7 | HQ542677 | None | | | | I13V, G16E, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| TG-M9 | TG-M9 | HQ542679 | None | | | | I13V, G16E, K20KI, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| DT-M5 | DT-M5 | HQ542693 | None | | | | L10LI, I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| AG-M3 | AG-M3 | HQ542614 | None | | | | I13V, E35D, M36I, R41K, R57K, I62IV, H69K, L89M | CRF01_AE |
| AG-M5 | AG-M5 | HQ542616 | None | | | | I13V, K20KR, E35D, M36I, R41K, H69K, I72IM, L89M | CRF01_AE |
| AG-M7 | AG-M7 | HQ542617 | None | | | | I13V, E35D, M36I, R41K, K43R, L63C, H69K, V82VI, L89M | CRF01_AE |
| AG-M8 | AG-M8 | HQ542618 | None | | | | I13V, E35D, M36I, R41K, R57RK, L63LP, H69K, L89M | CRF01_AE |
| AG-M12 | AG-M12 | HQ542622 | None | | | | L10I, I13V, M36I, R41K, H69K, V82I, L89I | CRF01_AE |
| AG-M13 | AG-M13 | HQ542623 | None | | | | L10I, I13V, G16GA, M36I, R41K, D60DN, L63C, H69K, L89M | CRF01_AE |
| AG-M14 | AG-M14 | HQ542624 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82VI, L89M | CRF01_AE |
| AG-M15 | AG-M15 | HQ542625 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| AG-M16 | AG-M16 | HQ542626 | None | | | | I13V, E35D, M36I, R41K, D60E, H69K, L89M | CRF01_AE |
| AG-M18 | AG-M18 | HQ542628 | None | | | | I13V, K20KR, E35D, M36I, R41K, H69K, L89M, T91TI | CRF01_AE |
| AG-M21 | AG-M21 | HQ542630 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, T91V | CRF01_AE |
| AG-M24 | AG-M24 | HQ542632 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AG-M25 | AG-M25 | HQ542633 | None | | | | I13V, K20R, M36I, R41K, K45KR, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| VT-M3 | VT-M3 | HQ542635 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VT-M13 | VT-M13 | HQ542641 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| VT-M14 | VT-M14 | HQ542642 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| VT-M15 | VT-M15 | HQ542643 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| VT-M16 | VT-M16 | HQ542644 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, I62IM, H69K, K70R, L89M | CRF01_AE |
| VT-M22 | VT-M22 | HQ542650 | None | | | | I13V, E35D, M36I, N37D, R41K, L63T, E65D, H69K, L89M | CRF01_AE |
| DN-M3 | DN-M3 | HQ542656 | None | | | | I13V, G16A, E35N, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| DN-M6 | DN-M6 | HQ542658 | None | | | | L10LV, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| DN-M11 | DN-M11 | HQ542662 | None | | | | I13V, G16A, M36I, N37D, R41K, P44PS, H69K, K70R, L89M, I93L | CRF01_AE |
| DN-M13 | DN-M13 | HQ542664 | None | | | | I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| DN-M18 | DN-M18 | HQ542667 | None | | | | T4N, L10LI, I13V, K14R, G16GE, M36I, R41K, D60E, Q61QE, L63P, H69K, L89M, I93L | CRF01_AE |
| DN-M22 | DN-M22 | HQ542669 | None | | | V11I | I13V, I15V, G16GE, K20I, E35ED, M36I, R41K, H69K, L89M | CRF01_AE |
| DN-M23 | DN-M23 | HQ542670 | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TG-M1 | TG-M1 | HQ542672 | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| TG-M4 | TG-M4 | HQ542674 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, Q61QE, H69K, K70R, I72V, L89M | CRF01_AE |
| TG-M5 | TG-M5 | HQ542675 | None | | | | L10I, I13V, G16E, E35DN, M36I, R41K, L63LV, H69K, L89M | CRF01_AE |
| TG-M6 | TG-M6 | HQ542676 | None | | | | I13V, K14KR, Q18H, E35D, M36I, R41K, R57RK, L63PS, H69K, V77I, L89M | CRF01_AE |
| TG-M12 | TG-M12 | HQ542681 | None | | | | I13V, G16A, K20R, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| TG-M15 | TG-M15 | HQ542683 | None | | | | I13V, I15V, G16E, E35D, M36I, R41K, H69K, L89M, Q92K | CRF01_AE |
| TG-M16 | TG-M16 | HQ542684 | None | | | L33F | I13V, G16A, M36I, N37D, R41K, L63F, H69K, L89M, I93L, L97P | CRF01_AE |
| TG-M17 | TG-M17 | HQ542685 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, K55N, L63C, H69K, L89M | CRF01_AE |
| TG-M20 | TG-M20 | HQ542687 | None | | | | I13V, G16A, E35D, M36I, N37D, R57RK, L63C, H69K, V82VI, L89M | CRF01_AE |
| TG-M21 | TG-M21 | HQ542688 | None | | | | I13V, K20KR, E35D, M36I, R41K, K43KN, H69K, L89M | CRF01_AE |
| TG-M24 | TG-M24 | HQ542690 | None | | | | I13V, G16A, E35D, M36I, N37D, L63C, H69K, V82VI, L89M | CRF01_AE |
| DT-M1 | DT-M1 | HQ542691 | None | | | | L10LV, I13V, G16E, E35D, M36I, R41K, H69K, I72IV, L89M | CRF01_AE |
| DT-M4 | DT-M4 | HQ542692 | None | | | | L10V, I13V, E35D, M36I, R41K, L63P, H69K, K70R, L89M | CRF01_AE |
| DT-M8 | DT-M8 | HQ542694 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| DT-M10 | DT-M10 | HQ542696 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, L63V, I64M, H69K, L89M, I93L | CRF01_AE |
| DT-M12 | DT-M12 | HQ542697 | None | | | | I13V, K14R, I15IV, E35D, M36I, R41K, R57K, L63C, H69K, L89M | CRF01_AE |
| DT-M13 | DT-M13 | HQ542698 | None | | | | L10I, I13V, M36I, R41K, L63C, H69K | CRF01_AE |
| DT-M14 | DT-M14 | HQ542699 | None | | | L10LFIV | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| DT-M16 | DT-M16 | HQ542701 | None | | | | I13V, K14R, I15V, G16E, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| DT-M21 | DT-M21 | HQ542706 | None | | | | T12A, I13V, E35D, M36I, R41K, K45R, L63T, H69K, V82I, L89M | CRF01_AE |
| DT-M24 | DT-M24 | HQ542707 | None | | | | I13V, I15IV, E35D, M36I, R41K, H69KR, L89M | CRF01_AE |
| DT-M25 | DT-M25 | HQ542708 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Li (2011) | 1119 | 1119 | HQ215553 | None | | | | I13V, L19M, K20R, E35D, M36I, R41K, R57K, H69K, V82I, L89M, I93L | CRF01_AE |
Ndembi (2011) | NTCPS729 | NTCPS729 | HQ702616 | None | | | | I13V, K14R, E35D, M36I, N37D, R41K, R57K, D60E, I62V, C67H, H69K, L89M | CRF01_AE |
| AICPS434 | AICPS434 | HQ702617 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| NTCPS726 | NTCPS726 | HQ702620 | None | | | | I13V, E35D, M36I, R41K, R57K, D60E, L63P, H69K, L89M | CRF01_AE |
Ng (2011) | FREE002 | FREE002 | HQ539007 | None | | | | I13V, K20R, M36I, N37D, Q61E, L63P, H69K, L89M, I93L | CRF01_AE |
| FREE008 | FREE008 | HQ539010 | None | | | I50S | I13V, E35D, M36I, R57K, L63P, H69K, I72T, L89M | CRF01_AE |
| FREE019 | FREE019 | HQ539014 | None | | | | T12P, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FREE024 | FREE024 | HQ539016 | None | | | | I13V, K20R, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| FREE026 | FREE026 | HQ539017 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| FREE027 | FREE027 | HQ539018 | None | | | | I13V, E35D, M36I, R57K, H69K, V82I, L89M | CRF01_AE |
| FREE034 | FREE034 | HQ539022 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M, T91V | CRF01_AE |
| FREE038 | FREE038 | HQ539023 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FREE061 | FREE061 | HQ539028 | None | | | | I13V, I15V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| FREE063 | FREE063 | HQ539029 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| FREE065 | FREE065 | HQ539030 | None | | | L33F | I13V, G16E, N37S, P39S, L63S, H69K, K70R, L89M, I93L | CRF01_AE |
| FREE068 | FREE068 | HQ539032 | None | | | | I13V, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| HM002 | HM002 | HQ539037 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM003 | HM003 | HQ539038 | None | | | | I13V, K20R, E35D, M36I, R41K, L63P, H69K, L89M, Q92H, I93L | CRF01_AE |
| HM004 | HM004 | HQ539039 | None | | | | Q7R, I13V, G16E, K20R, E35D, M36I, R41K, H69K, V77I, L89M, T91A, L97I | CRF01_AE |
| HM007 | HM007 | HQ539042 | None | | | | I13V, E35N, M36I, R41K, H69K, I72V, L89M, F99L | CRF01_AE |
| HM008 | HM008 | HQ539043 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM009 | HM009 | HQ539044 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM012 | HM012 | HQ539047 | None | | | | L10I, I13V, G16E, E35D, M36I, R57K, L63S, H69K, L89M | CRF01_AE |
| HM014 | HM014 | HQ539049 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM016 | HM016 | HQ539051 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM018 | HM018 | HQ539053 | None | | | L89V | I13V, E35D, M36I, R41K, H69K | CRF01_AE |
| HM020 | HM020 | HQ539054 | None | | | | I13V, K14R, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM023 | HM023 | HQ539057 | None | | | | I13V, M36I, R41K, L63P, I64V, H69K | CRF01_AE |
| HM025 | HM025 | HQ539059 | None | | | | T12P, I13V, K20R, A22T, E35D, M36I, R41K, E65K, H69K, L89M, L97I | CRF01_AE |
| HM026 | HM026 | HQ539060 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| HM028 | HM028 | HQ539062 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| HM029 | HM029 | HQ539063 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| HM030 | HM030 | HQ539064 | None | | | | T12A, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM035 | HM035 | HQ539068 | None | | | | I13V, L33V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM038 | HM038 | HQ539071 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| HM040 | HM040 | HQ539073 | None | | | | L10I, I13V, E35D, M36I, R41K, H69Q, L89M | CRF01_AE |
| HM042 | HM042 | HQ539075 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| HM043 | HM043 | HQ539076 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM044 | HM044 | HQ539077 | None | | | | I13V, E35D, M36I, R57K, L63P, H69K, L89M | CRF01_AE |
| HM045 | HM045 | HQ539078 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM047 | HM047 | HQ539080 | None | | | | I13V, E35D, M36I, R41K, H69K, I72T, L89M | CRF01_AE |
| HM051 | HM051 | HQ539084 | None | | | | I13V, G16E, K20R, E35D, M36I, P39S, R41K, K45R, L63P, H69K, L89M, I93L | CRF01_AE |
| HM054 | HM054 | HQ539087 | None | | | | I13V, G16E, K20M, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| HM055 | HM055 | HQ539088 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM058 | HM058 | HQ539090 | None | | | | I13V, I15V, M36I, R41K, H69K, L89M | CRF01_AE |
| HM063 | HM063 | HQ539094 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM067 | HM067 | HQ539096 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM070 | HM070 | HQ539099 | None | | | | I13V, K20R, M36I, R41K, C67Y, H69K, L89M | CRF01_AE |
| HM073 | HM073 | HQ539102 | None | | | | I13V, E35D, M36I, R41K, I62V, L63P, H69R, L89M | CRF01_AE |
| HM074 | HM074 | HQ539103 | None | | | | I13V, G16E, E35D, M36I, R57K, Q61E, H69K, K70R, V82I, L89M | CRF01_AE |
| HM078 | HM078 | HQ539107 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM081 | HM081 | HQ539110 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| HM085 | HM085 | HQ539113 | None | | | | I13V, I15V, E35D, M36I, R57K, H69K, V82I, L89M | CRF01_AE |
| HM086 | HM086 | HQ539114 | None | | | | I13V, K20I, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M | CRF01_AE |
| HM089 | HM089 | HQ539117 | None | | | | T12P, I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| HM090 | HM090 | HQ539118 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM094 | HM094 | HQ539121 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, Q61E, H69K, I72V, L89M | CRF01_AE |
| HM095 | HM095 | HQ539122 | None | | | | L10I, I13V, K14R, G16E, E35D, M36I, N37D, R41K, H69K, L89M, F99L | CRF01_AE |
| HM096 | HM096 | HQ539123 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM099 | HM099 | HQ539125 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| HM100 | HM100 | HQ539126 | None | | | | I13V, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| HM104 | HM104 | HQ539130 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| HM105 | HM105 | HQ539131 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| HM108 | HM108 | HQ539134 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M, F99L | CRF01_AE |
| HM109 | HM109 | HQ539135 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M, L97I | CRF01_AE |
| HM112 | HM112 | HQ539138 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| HM116 | HM116 | HQ539142 | None | | | | I13V, E35D, M36I, R57K, H69K, L89M | CRF01_AE |
| HM119 | HM119 | HQ539144 | None | | | | I13V, I15V, G16E, K20R, E35D, M36I, R57K, D60E, L63S, H69K, L89M, I93L | CRF01_AE |
| HM123 | HM123 | HQ539148 | None | | | | I13V, E35D, M36I, R41K, D60E, Q61E, H69K, L89M | CRF01_AE |
| HM125 | HM125 | HQ539150 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM126 | HM126 | HQ539151 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM129 | HM129 | HQ539154 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| HM131 | HM131 | HQ539156 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM132 | HM132 | HQ539157 | None | | | | I13V, I15V, M36I, R57K, Q61E, L63P, H69K, K70R, L89M | CRF01_AE |
| HM135 | HM135 | HQ539160 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM136 | HM136 | HQ539161 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| HM137 | HM137 | HQ539162 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM138 | HM138 | HQ539163 | None | | | | I13V, G16E, M36I, H69K, I72V, V82I, L89M | CRF01_AE |
| HM140 | HM140 | HQ539165 | None | | | | T12P, I13V, K14R, E35D, M36I, R41K, L63S, H69K, T74S, L89M | CRF01_AE |
| HM143 | HM143 | HQ539168 | None | | | | I13V, E35D, M36I, R41K, I62V, L63P, H69K, K70R, V82I, L89M, T91I | CRF01_AE |
| HM144 | HM144 | HQ539169 | None | | | | I13V, G16E, K20I, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM145 | HM145 | HQ539170 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM150 | HM150 | HQ539175 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| HM152 | HM152 | HQ539176 | None | | | | I13V, K20I, E35D, M36I, R57K, H69K, V82I, L89M | CRF01_AE |
| HM153 | HM153 | HQ539177 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| HM155 | HM155 | HQ539180 | None | | | | I13V, M36I, D60E, H69K, L89M, I93L | CRF01_AE |
| HM159 | HM159 | HQ539182 | None | | | | I13V, K20R, E35D, M36I, N37D, H69K, L89M | CRF01_AE |
| HM160 | HM160 | HQ539183 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MOVL020 | MOVL020 | HQ539186 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, L89M | CRF01_AE |
| MOVL024 | MOVL024 | HQ539188 | None | | | | I13V, E35D, M36I, R41K, H69K, K70Q, L89M | CRF01_AE |
| MOVL136 | MOVL136 | HQ539190 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MOVL067 | MOVL067 | HQ539192 | None | | | | I13V, E35D, M36I, N37D, R57K, L63P, H69K, K70R, L89M | CRF01_AE |
| MOVL094 | MOVL094 | HQ539194 | None | | | | I13V, E35D, M36I, R41K, Q61E, H69K, I72M, L89M | CRF01_AE |
| MOVL119 | MOVL119 | HQ539196 | None | | | | T12P, I13V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| MOVL127 | MOVL127 | HQ539198 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MOVL134 | MOVL134 | HQ539199 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, V82I, L89M | CRF01_AE |
| MOVL148 | MOVL148 | HQ539200 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| MOVL183 | MOVL183 | HQ539202 | None | | | | I13V, M36I, N37S, R41K, H69K, I72V, L89M | CRF01_AE |
| MOVL224 | MOVL224 | HQ539203 | None | | | | I13V, I15V, G16E, K20R, E35D, M36I, R57K, D60E, L63S, H69K, L89M, I93L | CRF01_AE |
Ngo-Giang-Huong (2011) | PHPT0375 | PHPT0375PR-RT | HQ996498 | None | | | L33F | L10I, I13V, E35D, M36I, R41K, G68E, H69K, K70R, L89IM | CRF01_AE |
| PHPT2522 | PHPT2522PR-RT | HQ996499 | None | | | | L10V, I13V, K14R, G16E, E35D, M36I, N37E, R41K, H69K, K70R, L89M | CRF01_AE |
| PHPT4397 | PHPT4397PR-RT | HQ996500 | None | | | | L10IV, I13V, I15V, G16E, K20KI, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| PHPT4703 | PHPT4703PR-RT | HQ996501 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| PHPT1216 | PHPT1216PR-RT | HQ996502 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| PHPT2944 | PHPT2944PR-RT | HQ996503 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| PHPT4016 | PHPT4016PR-RT | HQ996504 | None | | | | I13V, E35D, M36I, R41K, H69K, L89IM | CRF01_AE |
| PHPT4484 | PHPT4484PR-RT | HQ996505 | None | | | | I13V, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| PHPT2780 | PHPT2780PR-RT | HQ996506 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| PHPT4619 | PHPT4619PR-RT | HQ996507 | None | | | | I13V, E35D, M36I, N37ND, R41K, H69K, L89M | CRF01_AE |
| PHPT4015 | PHPT4015PR-RT | HQ996509 | None | | | | I13V, I15V, K20I, M36I, H69K, I72E, V82I, L89M | CRF01_AE |
| PHPT1374 | PHPT1374PR-RT | HQ996511 | None | | | | L10LV, T12TP, I13V, I15IV, K20R, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| PHPT1927 | PHPT1927PR-RT | HQ996513 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| PHPT4163 | PHPT4163PR-RT | HQ996517 | None | | | | I13V, I15IV, K20KI, E35D, M36I, R41K, K43KR, R57RK, H69K, V82I, L89M, T91V | CRF01_AE |
| PHPT2709 | PHPT2709PR-RT | HQ996518 | None | | | | L10I, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| PHPT2972 | PHPT2972PR-RT | HQ996523 | None | | | | L10I, T12A, I13V, E35D, M36I, R41K, R57K, H69K, L89I | CRF01_AE |
| PHPT1601 | PHPT1601PR-RT | HQ996524 | None | | | | L10LI, I13V, G16E, E35D, M36I, R41K, R57K, I62IV, H69K, L89M | CRF01_AE |
| PHPT4801 | PHPT4801PR-RT | HQ996525 | None | | | | I13V, I15V, K20KR, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| PHPT1567 | PHPT1567PR-RT | HQ996526 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| PHPT0650 | PHPT0650PR-RT | HQ996527 | None | | | | I13V, E35D, M36I, R41K, R57K, L63S, H69K, K70R, L89M | CRF01_AE |
Sigaloff (2011) | HIV102032 | HIV102032 | JN132291 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, I62V, I64M, H69K, L89M | CRF01_AE |
Su (2011) | LZ1007 | LZ1007 | HQ588180 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2008 | LZ2008 | HQ588183 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2009 | LZ2009 | HQ588184 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2013 | LZ2013 | HQ588186 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2014 | LZ2014 | HQ588187 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| LZ2015 | LZ2015 | HQ588188 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2016 | LZ2016 | HQ588189 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2017 | LZ2017 | HQ588190 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2018 | LZ2018 | HQ588191 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2019 | LZ2019 | HQ588192 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2020 | LZ2020 | HQ588193 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2022 | LZ2022 | HQ588194 | None | | | | I13V, E35D, M36I, R41K, R57K, Q61E, H69K, K70R, L89M | CRF01_AE |
| LZ2034 | LZ2034 | HQ588196 | None | | | | I13V, E35D, M36I, R41K, H69K, L89I | CRF01_AE |
| LZ2055 | LZ2055 | HQ588197 | None | | | | I13V, M36I, R41K, H69K, K70R, T74S, L89M, I93L, G94A | CRF01_AE |
| LZ2066 | LZ2066 | HQ588199 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2070 | LZ2070 | HQ588201 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| LZ2082 | LZ2082 | HQ588202 | None | | | | I13V, M36I, R57K, L63D, H69R, I72T, L89M, I93L | CRF01_AE |
| LZ2090 | LZ2090 | HQ588203 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| LZ2100 | LZ2100 | HQ588206 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2101 | LZ2101 | HQ588207 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| LZ2107 | LZ2107 | HQ588208 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2110 | LZ2110 | HQ588210 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| LZ2123 | LZ2123 | HQ588216 | None | | | | T12A, I13V, M36I, R41K, H69R, V77I, L89M, I93L | CRF01_AE |
| LZ2130 | LZ2130 | HQ588217 | None | | | | T12A, I13V, M36I, R41K, H69R, V77I, L89M, I93L | CRF01_AE |
| LZ2136 | LZ2136 | HQ588219 | None | | | | T12A, I13V, E35D, M36I, R41K, K45E, Y59C, E65A, H69K, K70E, G73V, V75A, G78R, L89M | CRF01_AE |
| LZ2147 | LZ2147 | HQ588223 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2160 | LZ2160 | HQ588226 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2163 | LZ2163 | HQ588229 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2164 | LZ2164 | HQ588230 | None | | | | L10V, I13V, G16E, M36I, R41K, H69K, L89M | CRF01_AE |
| LZ2168 | LZ2168 | HQ588231 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, L63V, H69K, I72V, L89M, I93L | CRF01_AE |
| GXNN5820 | GXNN5820 | HQ588233 | None | | | | I13V, G16E, L19I, K20M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN5851 | GXNN5851 | HQ588234 | None | | | | I13V, M36I, R41K, H69R, L89M, I93L | CRF01_AE |
| GXNN5927 | GXNN5927 | HQ588235 | None | | | | I13V, E35D, M36I, R41K, H69R, L89M, I93L | CRF01_AE |
| GXNN5019 | GXNN5019 | HQ588238 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| GXBY5817 | GXBY5817 | HQ588239 | None | | | | I13V, E35D, M36I, R41K, H69R, I72V, L89M, I93L | CRF01_AE |
| GXNN2983 | GXNN2983 | HQ588240 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| GXHX5907 | GXHX5907 | HQ588242 | None | | | | I13V, G16E, L19I, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| GXHX6819 | GXHX6819 | HQ588243 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN1960 | GXNN1960 | HQ588244 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXHX1605 | GXHX1605 | HQ588245 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| GXNN1610 | GXNN1610 | HQ588246 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN1877 | GXNN1877 | HQ588247 | None | | | | I13V, G16GE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN4801 | GXNN4801 | HQ588249 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| GXBY5848 | GXBY5848 | HQ588250 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| GXNN7001 | GXNN7001 | HQ588251 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN7368 | GXNN7368 | HQ588252 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXHX6917 | GXHX6917 | HQ588254 | None | | | | I13V, G16E, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| GXHX7248 | GXHX7248 | HQ588255 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| GXHX7249 | GXHX7249 | HQ588256 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| GXNN7330 | GXNN7330 | HQ588257 | None | | | | I13V, G17D, K20R, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| GXBY7485 | GXBY7485 | HQ588258 | None | | | | I13V, G16E, E35D, M36I, R41K, K45R, H69K, L89M | CRF01_AE |
| GXNN1819 | GXNN1819 | HQ588260 | None | | | | I13V, G16E, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| GXBY3609 | GXBY3609 | HQ588262 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN3989 | GXNN3989 | HQ588263 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN5341 | GXNN5341 | HQ588264 | None | | | | I13V, M36I, N37Y, R41K, H69K, V82I, L89M | CRF01_AE |
| GXNN5642 | GXNN5642 | HQ588265 | None | | | | T12TI, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN5863 | GXNN5863 | HQ588266 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN6069 | GXNN6069 | HQ588267 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| GXBY6187 | GXBY6187 | HQ588268 | None | | | | I13V, E35D, M36V, R41K, H69K, L89M | CRF01_AE |
| GXHX7293 | GXHX7293 | HQ588269 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN5822 | GXNN5822 | HQ588270 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| GXNN7219 | GXNN7219 | HQ588274 | None | | | | I13V, K20I, E35G, M36I, R41K, H69K, A71T, L89T | CRF01_AE |
| GXNN0594 | GXNN0594 | HQ588302 | None | | | | I13V, G16E, E35D, M36I, R41K, K55KN, H69K, I72V, L89M | CRF01_AE |
Telan (2011) | 09MM_09-1840 | 09MM_09-1840 | AB587100 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| 10MC_01-52 | 10MC_01-52 | AB587106 | None | | | | I13V, K14R, K20R, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
Yang (2011) | KN-15 | KN-15 | JQ616929 | None | | | | T12S, I13V, E35D, M36I, R41K, K45R, R57K, L63S, H69K, L89M | CRF01_AE |
Ye (2011) | BJ07149 | BJ07149 | JF906577 | None | | | | T12A, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| BJ07268 | BJ07268 | JF906600 | None | | | | I13V, G16E, L19T, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| BJ07357 | BJ07357 | JF906619 | None | | | | I13V, K14R, L19T, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| BJ07364 | BJ07364 | JF906621 | None | | | | I13V, L19T, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| BJ07371 | BJ07371 | JF906624 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| BJ07425 | BJ07425 | JF906641 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, K70R, V77I, L89M | CRF01_AE |
| BJ07546 | BJ07546 | JF906667 | None | | | | I13V, L19T, E35D, M36I, R41K, H69K, I72V, V77I, L89M | CRF01_AE |
| BJ07621 | BJ07621 | JF906688 | None | | | | I13V, L19I, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| BJ07627 | BJ07627 | JF906691 | None | | | | L10V, I13V, G16E, L19I, E35D, M36I, R41K, K45R, H69K, K70R, L89M | CRF01_AE |
| BJ07632 | BJ07632 | JF906693 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| BJ07639 | BJ07639 | JF906696 | None | | | | I13V, L19M, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
Zeng (2011) | K4 | K4 | JF505560 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, I93L | CRF01_AE |
| K5 | K5 | JF505561 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, V82I, L89M | CRF01_AE |
| K39 | K39 | JF505562 | None | | | | L10M, I13V, L19M, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| K55 | K55 | JF505565 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, V82I, L89M, I93L | CRF01_AE |
| U4 | U4 | JF505567 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| G1 | G1 | JF505568 | None | | | | I13V, E35D, M36I, R41K, H69K, T74S, L89M, I93L | CRF01_AE |
| G2 | G2 | JF505569 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| G6 | G6 | JF505573 | None | | | | I13V, E35D, M36I, R41K, K45R, H69K, I72V, L89M | CRF01_AE |
| G7 | G7 | JF505574 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| K9 | K9 | JF505577 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| G9 | G9 | JF505581 | None | | | | I13V, M36I, H69K, L89M | CRF01_AE |
| G8 | G8 | JF505591 | None | | | | I13V, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| K37 | K37 | JF505592 | None | | | | I13V, E35D, M36I, R41K, H69K, I72M, V82I, L89M | CRF01_AE |
| K60 | K60 | JF505593 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| M2 | M2 | JF505612 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| K41 | K41 | JF505564 | None | | | | I13V, I15V, K20I, E35D, M36I, R41K, H69K, K70R, I72V, V82I, L89M | CRF01_AE |
| K6 | K6 | JF505566 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| G10 | G10 | JF505594 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
An (2012) | 09LNA379 | 09LNA379 | JX960603 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 10LNA103 | 10LNA103 | JX960608 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 10LNA124 | 10LNA124 | JX960609 | None | | | | L10V, I13V, K14R, G16E, E35D, M36I, R41K, H69K, K70Q, L89M, Q92K | CRF01_AE |
| 10LNA819 | 10LNA819 | JX960610 | None | | | | L10V, I13V, K14R, G16E, E35D, M36I, R41K, H69K, K70Q, L89M, Q92K, C95Y | CRF01_AE |
| 08LNA002 | 08LNA002 | JX960612 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 09LNA020 | 09LNA020 | JX960613 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 09LNA230 | 09LNA230 | JX960614 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 10LNA821 | 10LNA821 | JX960616 | None | | | | I13V, L19M, E35D, M36I, R41K, C67Y, H69K, R87Q, L89M | CRF01_AE |
| 09LNA527 | 09LNA527 | JX960625 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, K70R, V82I, L89M, I93L | CRF01_AE |
| 10LNA105 | 10LNA105 | JX960626 | None | | | | I13V, G16E, L19M, K20R, E35D, M36I, R41K, K45R, I62V, L63T, H69K, V82I, L89M, I93L | CRF01_AE |
| 09LNA353 | 09LNA353 | JX960628 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 10LNA016 | 10LNA016 | JX960629 | None | | | | I13V, L19M, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| 09LNA136 | 09LNA136 | JX960631 | None | | | | I13V, L19I, M36I, H69K, L89M | CRF01_AE |
| 10LNA976 | 10LNA976 | JX960632 | None | | | | T12S, I13V, L19I, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| 09LNA025 | 09LNA025 | JX960634 | None | | | | I13V, L19M, E35D, M36I, R41K, L63P, H69K, K70R, V77I, L89M | CRF01_AE |
| 09LNA423 | 09LNA423 | JX960635 | None | | | | I13V, E35D, M36I, R41K, K45R, L63C, H69K, L89M | CRF01_AE |
Caron (2012) | Gab062202 | Gab062202 | HQ541924 | None | | | | I13V, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| Gab081183 | Gab081183 | HQ541932 | None | | | | I13V, G17E, L19I, E35D, M36I, N37D, R41K, K43R, L63P, H69K, L89M | CRF01_AE |
| Gab082111 | Gab082111 | HQ541935 | None | | | | I13V, L19I, E35N, M36L, N37D, R41K, L63P, H69K, L89M | CRF01_AE |
| Gab082238 | Gab082238 | HQ541937 | None | | | | I13V, I15V, L19I, K20R, E35D, M36I, N37D, R41K, D60E, Q61E, L63P, H69K, K70R, I72T, L89M | CRF01_AE |
Chen (2012) | YN09DH0001 | YN09DH0001 | JQ658474 | None | | | | I13V, E35D, M36I, R41K, H69K, I72IV, V77I, V82I, L89M | CRF01_AE |
| YN09DH0002 | YN09DH0002 | JQ658475 | None | | | | I13V, E35D, M36I, R41K, H69K, V77I, V82I, L89M | CRF01_AE |
| YN09DH0016 | YN09DH0016 | JQ658489 | None | | | | L10I, I13V, I15V, K20I, E35D, M36I, L63P, H69K, V82I, L89M, I93V | CRF01_AE |
| YN09DH0021 | YN09DH0021 | JQ658492 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| YN09DH0032 | YN09DH0032 | JQ658502 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| YN09DH0046 | YN09DH0046 | JQ658516 | None | | | | L10V, I13V, I15IM, E35D, M36I, N37D, R41K, R57K, H69K, L89M, I93L | CRF01_AE |
| YN09DH0056 | YN09DH0056 | JQ658525 | None | | | L33F | I13V, K14N, L23LP, E35D, M36I, H69K, I72IV, L89M, I93V | CRF01_AE |
| YN09DH0099 | YN09DH0099 | JQ658563 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, L63I, H69K, I72IV, L89M, I93IV | CRF01_AE |
| YN09DH0109 | YN09DH0109 | JQ658572 | None | | | | I13V, L33V, M36I, R41K, K55KR, H69K, L89M | CRF01_AE |
| YN09DH0139 | YN09DH0139 | JQ658597 | None | | | | I13V, I15IV, K20KR, E35D, M36V, R41K, H69K, K70KR, L89M | CRF01_AE |
| YN09DH0150 | YN09DH0150 | JQ658607 | None | | | | T12I, I13V, G16E, E35D, M36I, R41K, R57K, I62V, H69K, L89M, I93IV | CRF01_AE |
| YN09DH0155 | YN09DH0155 | JQ658612 | None | | | | I13V, E35D, M36I, N37D, R41K, L63P, H69K, V77I, L89M | CRF01_AE |
| YN09DH0157 | YN09DH0157 | JQ658614 | None | | | | I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| YN09DH0165 | YN09DH0165 | JQ658622 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, L63I, H69K, L89M, I93IV | CRF01_AE |
| YN10DH0020 | YN10DH0020 | JQ658646 | None | | | | I13V, M36V, R41K, L63P, H69K, A71V, I72IV, I93L | CRF01_AE |
| YN10DH0022 | YN10DH0022 | JQ658647 | None | | | | L10I, I13V, E35D, M36I, R41K, H69KQ, L89M | CRF01_AE |
| YN10DH0024 | YN10DH0024 | JQ658649 | None | | | L33F | I13V, M36I, P39Q, R41K, R57RK, L63P, H69K, L89M, I93L | CRF01_AE |
| YN10DH0038 | YN10DH0038 | JQ658662 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72IV, L89M | CRF01_AE |
| YN10DH0043 | YN10DH0043 | JQ658667 | None | | | | L10LI, I13V, E35D, M36I, R41K, D60DE, Q61QE, L63P, H69K, K70KR, L89M, I93V | CRF01_AE |
| YN10DH0044 | YN10DH0044 | JQ658668 | None | | | | L10I, I13V, E35D, M36I, R41K, L63P, H69KQ, L89M, I93V | CRF01_AE |
| YN10DH0058 | YN10DH0058 | JQ658681 | None | | | | I13V, E35D, M36I, R41K, I62V, H69K, K70R, I72IV, V82I, L89M | CRF01_AE |
| YN10DH0071 | YN10DH0071 | JQ658692 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, I72IV, V82VI, L89M | CRF01_AE |
| YN10DH0076 | YN10DH0076 | JQ658697 | None | | | | L10LV, I13V, I15IV, G16GE, E35D, M36I, N37NI, R41K, L63PS, C67*DEY, H69KR, L89M, T91S | CRF01_AE |
| YN10DH0085 | YN10DH0085 | JQ658706 | None | | | | I13V, M36I, R41K, I62V, L63P, H69K, K70R, V82I, L89M | CRF01_AE |
| YN10DH0104 | YN10DH0104 | JQ658725 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, V82I, L89M | CRF01_AE |
| YN10DH0121 | YN10DH0121 | JQ658741 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| YN10DH0129 | YN10DH0129 | JQ658749 | None | | | | I13V, I15V, L19I, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| YN10DH0130 | YN10DH0130 | JQ658750 | None | | | | L10I, I13V, G16A, E35ED, M36I, R41K, I62V, H69K, V77VI, L89IM, I93IM | CRF01_AE |
| YN10DH0142 | YN10DH0142 | JQ658761 | None | | | | L10I, I13V, G16E, E35D, M36I, P39Q, I62V, L63P, H69K, K70R, V82I, L89M, F99L | CRF01_AE |
| YN10DH0146 | YN10DH0146 | JQ658765 | None | | | | I13V, K14R, M36I, R41RK, H69K, K70KR, L89M | CRF01_AE |
| YN10DH0149 | YN10DH0149 | JQ658768 | None | | | | I13V, E35D, M36I, N37S, R41K, L63P, H69KR, L89M, I93V | CRF01_AE |
De Gascun (2012) | IRL13510 | IRL13510 | JN622219 | None | | | | I13V, K14R, M36I, R41K, H69K, L89M | CRF01_AE |
| IRL17746 | IRL17746 | JN622220 | None | | | | I13V, K14KE, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IRL25181 | IRL25181 | JN622221 | None | | | | Q7QR, L10V, I13V, G16E, K20I, E35D, M36I, N37NY, R41K, K45KN, L63V, H69K, G78GA, I85IM, L89M | CRF01_AE |
| IRL35854 | IRL35854 | JN622222 | None | | | | L10V, I13V, I15V, K20R, M36I, N37ND, R41RK, L63S, H69K, K70R, L89M | CRF01_AE |
| IRL39248 | IRL39248 | JN622223 | None | | | | L10V, I13V, K20R, M36I, R41K, L63S, H69K, K70R, L89M | CRF01_AE |
| IRL08974 | IRL08974 | JN622224 | None | | | | L10I, I13V, E35D, M36I, R41K, C67G, H69K, L89M | CRF01_AE |
| IRL40236 | IRL40236 | JN622227 | None | | | | I13V, G16E, E35D, M36I, R41K, I62V, H69K, L89M | CRF01_AE |
| IRL22469 | IRL22469 | JN622228 | None | | | | I13V, G16GA, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IRL27862 | IRL27862 | JN622229 | None | | | | I13V, K20R, M36I, N37S, R41RK, H69K, L89M, I93L | CRF01_AE |
| IRL39742 | IRL39742 | JN622230 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89I, Q92R | CRF01_AE |
| IRL52172 | IRL52172 | JN622231 | None | | | | L10IV, I13V, E35D, M36I, R41K, R57RK, I62V, L63H, H69K, P79PS, L89M | CRF01_AE |
| IRL58673 | IRL58673 | JN622232 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| IRL54561 | IRL54561 | JN622233 | None | | | | L10V, T12A, I13V, G16E, K20I, E35D, M36I, R41K, L63V, H69K, L89M | CRF01_AE |
| IRL15038 | IRL15038 | JN622253 | None | | | | L10I, T12TP, I13V, G16A, E35D, M36I, R41K, R57RK, H69K, L89M | CRF01_AE |
| IRL14463 | IRL14463 | JN622290 | None | | | | I13V, K20KR, E35D, M36I, R41K, R57RK, I62V, L63T, H69K, T74S, R87RI, L89M | CRF01_AE |
| IRL33062 | IRL33062 | JN622365 | None | | | | L10I, I13V, K14KR, I15V, K20KR, M36I, R41K, H69KQ, L89M | CRF01_AE |
Duc (2012) | 3780 | 3780 | JQ617183 | None | | | | I13V, G16A, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| 3708 | 3708 | JQ617184 | None | | | | L10I, I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| 3710 | 3710 | JQ617186 | None | | | | T12AP, I13V, K14KR, I15IV, L19LI, E35D, M36I, N37D, R41K, Q61QE, L63P, H69K, L89M | CRF01_AE |
| 3713 | 3713 | JQ617189 | None | | | | I13V, G16V, K20I, E35ED, M36I, N37D, R41K, K45KR, L63PS, H69K, K70R, L89M, I93L | CRF01_AE |
| 3714 | 3714 | JQ617190 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| 3715 | 3715 | JQ617191 | None | | | | I13V, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| 3716 | 3716 | JQ617192 | None | | | | I13V, G16E, E35D, M36I, P39Q, R41K, D60DE, H69K, L89M | CRF01_AE |
| 3717 | 3717 | JQ617193 | None | | | | I13V, G16GA, E35D, M36I, N37ND, R41K, H69K, L89M | CRF01_AE |
| 3720 | 3720 | JQ617196 | None | | | | I13V, G16E, E35D, M36I, P39PS, R41K, D60E, H69K, K70KR, I72V, L89M | CRF01_AE |
| 3723 | 3723 | JQ617199 | None | | | | I13V, G16A, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| 3725 | 3725 | JQ617201 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, K43R, C67CY, H69K, K70R, L89M | CRF01_AE |
| 3726 | 3726 | JQ617202 | None | | | | I13V, G16A, E35D, M36I, R41K, K45R, Y59YF, L63C, H69K, L89M, I93IL | CRF01_AE |
| 3731 | 3731 | JQ617207 | None | | | | I13V, K20KR, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| 3732 | 3732 | JQ617208 | None | | | | W6WL, L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 3733 | 3733 | JQ617209 | None | | | | W6WL, I13V, G16A, E35D, M36I, N37D, R41K, Q61E, H69K, K70R, V77VI, L89M | CRF01_AE |
| 3735 | 3735 | JQ617211 | None | | | | I13V, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| 3738 | 3738 | JQ617214 | None | | | | I13V, G17E, E35D, M36I, R41K, R57RK, L63C, E65EK, H69K, L89M | CRF01_AE |
| 3740 | 3740 | JQ617216 | None | | | | I13V, G16A, E35ED, M36I, N37D, R41K, D60DE, H69K, K70R, L89M | CRF01_AE |
| 3741 | 3741 | JQ617217 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| 3742 | 3742 | JQ617218 | None | | | | I13V, M36I, R41K, L63C, H69K, K70R, L89M | CRF01_AE |
| 3743 | 3743 | JQ617219 | None | | | | L10V, T12TA, I13V, K14KR, G16E, E35D, M36I, R41K, L63C, H69K, L89M, T91IV, L97LI | CRF01_AE |
| 3744 | 3744 | JQ617220 | None | | | | W6WL, L10I, I13V, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| 3745 | 3745 | JQ617221 | None | | | | I13V, G16E, E35D, M36I, R41K, D60E, H69K, K70R, L89M | CRF01_AE |
| 3746 | 3746 | JQ617222 | None | | | | I13V, G16GE, E35D, M36I, N37NI, R41K, L63C, H69K, L89M | CRF01_AE |
| 3747 | 3747 | JQ617223 | None | | | | I13V, K20KI, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| 3748 | 3748 | JQ617224 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| 3749 | 3749 | JQ617225 | None | | | | I13V, M36I, R41K, H69K, V82VI, L89M | CRF01_AE |
| 3752 | 3752 | JQ617228 | None | | | | L10V, I13V, K14R, K20R, E35D, M36I, R41K, L63P, H69K | CRF01_AE |
| 3755 | 3755 | JQ617231 | None | | | | W6WL, I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70R, L89M | CRF01_AE |
| 3756 | 3756 | JQ617232 | None | | | | W6WL, L10LI, I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| 3762 | 3762 | JQ617238 | None | | | | W6WL, L10I, I13V, G16E, E35D, M36I, R41K, H69KR, I72ILM, L89M, I93M | CRF01_AE |
| 3765 | 3765 | JQ617241 | None | | | | I13V, G16A, E35D, M36I, N37D, R41K, H69K, K70KR, T74TA, L89M, I93LV | CRF01_AE |
| 3766 | 3766 | JQ617242 | None | | | | W6WL, I13V, G16A, E35D, M36I, N37D, R41K, L63C, H69K, L89M | CRF01_AE |
| 3767 | 3767 | JQ617243 | None | | | | L10IV, I13V, G16E, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| 3769 | 3769 | JQ617245 | None | | | | W6WL, L10LI, I13V, G16A, E35D, M36IL, N37DE, R41RK, K43KR, L63T, E65ED, H69K, K70R, I72IMT, L89M | CRF01_AE |
| 3771 | 3771 | JQ617247 | None | | | | W6WL, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 3772 | 3772 | JQ617248 | None | | | | W6WL, I13V, I15IV, K20KR, E35D, M36I, N37ND, R41KQ, H69K, L89M | CRF01_AE |
| 3774 | 3774 | JQ617250 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, L63C, H69K, L89M | CRF01_AE |
| 3776 | 3776 | JQ617252 | None | | | | I13V, K14R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 3779 | 3779 | JQ617255 | None | | | | T12TP, I13V, I15IV, E35D, M36I, R41K, K43KR, H69K, L89M | CRF01_AE |
Hamers (2012) | CP076306001 | CP076306001 | JQ480266 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| CP076304748 | CP076304748 | | None | | | | L10I, I13V, E35D, M36I, R41K, K45R, L63P, H69N, L89M | CRF01_AE |
Jahanbakhsh (2012) | THR48 | THR48PRRT | AB716138 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
Karlsson (2012) | SE_6 | SE_6 | JQ698668 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_12 | SE_12 | JQ698673 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_17 | SE_17 | JQ698678 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_51 | SE_51 | JQ698702 | None | | | | I13V, K20R, E35D, M36I, R41RK, L63PS, H69K, K70R, V82VI, L89M, T91A, F99L | CRF01_AE |
| SE_56 | SE_56 | JQ698706 | None | | | | L10V, I13V, G16E, E35D, M36I, R41K, H69K, L89M, F99L | CRF01_AE |
| SE_59 | SE_59 | JQ698709 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| SE_62 | SE_62 | JQ698712 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_100 | SE_100 | JQ698735 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_105 | SE_105 | JQ698740 | None | | | | I13V, M36I, R41K, H69K, L89M | CRF01_AE |
| SE_110 | SE_110 | JQ698743 | None | | | | I13V, E35D, M36I, R41K, I62IV, L63PS, H69K, T74TS, L89M | CRF01_AE |
| SE_124 | SE_124 | JQ698753 | None | | | | I13V, G16A, E35D, M36I, R41K, H69K, K70KR, L89M | CRF01_AE |
| SE_140 | SE_140 | JQ698765 | None | | | | I13V, G16E, E35D, M36I, R41K, R57K, L63H, E65EK, H69K, R87RQ, L89M, T96TI | CRF01_AE |
| SE_149 | SE_149 | JQ698770 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_162 | SE_162 | JQ698780 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| SE_165 | SE_165 | JQ698782 | None | | | | I13V, G16E, L19LIM, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_175 | SE_175 | JQ698787 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| SE_200 | SE_200 | JQ698806 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_214 | SE_214 | JQ698818 | None | | | | L10I, I13V, I15V, K20KI, E35D, M36I, N37DE, K45KR, L63P, H69K, V82I, L89M, I93V, F99L | CRF01_AE |
| SE_218 | SE_218 | JQ698821 | None | | | | I13V, I15IV, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| SE_242 | SE_242 | JQ698836 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_260 | SE_260 | JQ698847 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, I72IV, L89M | CRF01_AE |
| SE_271 | SE_271 | JQ698856 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_279 | SE_279 | JQ698860 | None | | | | I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M, Q92K | CRF01_AE |
| SE_282 | SE_282 | JQ698861 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| SE_291 | SE_291 | JQ698866 | None | | | | I13V, K20R, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
Liu (2012) | 00TH_R1741 | 00_R1741 | AY945734 | None | | | | L10I, I13V, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| KL018 | 03_018.1 | DQ366664 | None | | | | I13V, I15V, K20R, E35D, M36I, N37D, R41K, H69K, L89M | CRF01_AE |
| M043 | M043 | DQ354113 | None | | | | I13V, I15V, E35D, M36I, N37D, R41K, H69K, L89M, I93L | CRF01_AE |
Mollan (2012) | MK9 | MK9w0 | | None | | | | I13V, I15V, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
| | MK9w107 | | None | | | | I13V, I15IV, K20KR, E35D, M36I, R41K, K43R, H69K, L89M | CRF01_AE |
Nazziwa (2012) | 3036602 | 3036602 | JX498985 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| 3058001 | 3058001 | JX498994 | None | | | | L10I, I13V, E35D, M36I, R41K, K43R, L63S, C67F, H69K, L89M | CRF01_AE |
Ndase (2012) | 52041312 | 52041312 | KC900666 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89M | CRF01_AE |
| 54017022 | 54017022 | KC900784 | None | | | | T12A, I13V, I15V, E35D, M36I, R41K, K45R, R57K, L63AITV, H69K, L89M | CRF01_AE |
| 52052162 | 52052162 | KC900717 | None | | | | I13V, E35D, M36I, R41K, K45R, L63S, H69K, K70R, L89M | CRF01_AE |
| 58028692 | 58028692 | KC900688 | None | | | | I13V, L19I, E35D, M36I, R41K, K45R, R57K, D60E, C67E, H69K, L89M | CRF01_AE |
| 54055952 | 54055952 | KC900660 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, L63P, H69K, L89M | CRF01_AE |
Oliveira (2012) | 05CVHAN51 | 05CVHAN51 | JF267456 | None | | | | T12R, I13V, L19I, M36I, N37D, R41K, R57K, V82I, L89M | CRF01_AE |
Rolland (2012) | AA001a12L | AA001a12L | JX446647 | None | | | | I13V, L19M, E35D, M36I, R41K, I62V, L63P, H69K, V77I, V82I, L89M | CRF01_AE |
| AA002a_LH13 | AA002a_LH13 | JX446668 | None | | | | I13V, E35D, M36I, R41K, R57K, L63P, H69K, L89M | CRF01_AE |
| AA003b12L | AA003b12L | JX446691 | None | | | | L10V, I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89M | CRF01_AE |
| AA004a_wg1 | AA004a_wg1 | JX446711 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| AA005a06L | AA005a06L | JX446722 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| AA006a03 | AA006a03 | JX446737 | None | | | L33F | I13V, M36I, N37S, P39S, R41K, H69K, L89M, I93V | CRF01_AE |
| AA007a_WG14 | AA007a_WG14 | JX446760 | None | | | | L10I, T12A, I13V, K14R, G16E, E35D, M36I, R41K, I62V, L63S, H69K, L89M | CRF01_AE |
| AA008a_LH15 | AA008a_LH15 | JX446769 | None | | | | I13V, G16E, E35D, M36I, N37K, R41K, R57K, H69K, L89M | CRF01_AE |
| AA009b03L | AA009b03L | JX446787 | None | | | | I13V, K14R, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA012a_LH8 | AA012a_LH8 | JX446832 | None | | | | I13V, K20R, M36I, R41K, H69K, L89M | CRF01_AE |
| AA014a02L | AA014a02L | JX446859 | None | | | | I13V, E35D, M36I, R41K, L63P, H69K, L89M, I93L | CRF01_AE |
| AA015a_LH1 | AA015a_LH1 | JX446869 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA016a05L | AA016a05L | JX446883 | None | | | | I13V, E35D, M36I, R41K, Q61E, H69K, L89M | CRF01_AE |
| AA017a_wg4 | AA017a_wg4 | JX446902 | None | | | L33F | I13V, E35D, M36I, R41K, H69K, L89M, T91I | CRF01_AE |
| AA020a_wg2 | AA020a_wg2 | JX446927 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA021a06L | AA021a06L | JX446938 | None | | | | I13V, I15V, E35D, M36I, R41K, R57K, H69K, K70R, L89M | CRF01_AE |
| AA022a_LH7 | AA022a_LH7 | JX446958 | None | | | | I13V, E35D, M36I, R41K, K45R, L63P, H69K, L89M | CRF01_AE |
| AA023a11L | AA023a11L | JX446974 | None | | | | I13V, E35D, M36I, R41K, K43R, I62V, L63P, H69K, V82I, L89M | CRF01_AE |
| AA024a08 | AA024a08 | JX446989 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA026a01L | AA026a01L | JX447012 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M, T91V | CRF01_AE |
| AA028a_wg9 | AA028a_wg9 | JX447032 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA029b02L | AA029b02L | JX447037 | None | | | | L10V, I13V, G16E, K20R, E35D, M36I, R41K, H69K, I72V, L89M | CRF01_AE |
| AA030a12 | AA030a12 | JX447062 | None | | | | L10I, I13V, E35D, M36I, R41K, C67W, H69K, K70R, L89M | CRF01_AE |
| AA031a_LH2 | AA031a_LH2 | JX447069 | None | | | | I13V, I15V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA032a05 | AA032a05 | JX447075 | None | | | | I13V, E35D, M36I, R41K, R57K, L89M | CRF01_AE |
| AA033a_wg4a | AA033a_wg4a | JX447079 | None | | | | I13V, L19M, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA034a_wg4 | AA034a_wg4 | JX447090 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA035a03L | AA035a03L | JX447096 | None | | | | I13V, K20I, E35D, M36I, R41K, H69K, V82I, L89M | CRF01_AE |
| AA036a05L | AA036a05L | JX447114 | None | | | | I13V, E35D, M36I, R41K, L63LP, H69K, L89M | CRF01_AE |
| AA037a_wg1 | AA037a_wg1 | JX447130 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| AA038a_WG3 | AA038a_WG3 | JX447132 | None | | | | L10V, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA041a01L | AA041a01L | JX447167 | None | | | | I13V, M36I, R41K, L63C, H69K, T74A, L89M, I93L | CRF01_AE |
| AA042a07L | AA042a07L | JX447193 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA044a_LH20 | AA044a_LH20 | JX447218 | None | | | | I13V, E35D, M36I, R41K, L63S, H69K | CRF01_AE |
| AA045a01L | AA045a01L | JX447232 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA048b12L | AA048b12L | JX447241 | None | | | | I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| AA049a_WG11 | AA049a_WG11 | JX447266 | None | | | | L10I, I13V, E35D, M36I, R41K, H69K, V77I, L89M | CRF01_AE |
| AA050a_WG2 | AA050a_WG2 | JX447285 | None | | | | I13V, G16A, E35D, M36I, R41K, D60E, Q61E, H69K, L89M, I93L | CRF01_AE |
| AA051b03L | AA051b03L | JX447291 | None | | | | L10I, I13V, K14R, E35D, M36I, R41K, K43R, I62V, L63S, H69K, V82I, L89M | CRF01_AE |
| AA052a01 | AA052a01 | JX447300 | None | | | | I13V, G16A, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA055a_WG3 | AA055a_WG3 | JX447311 | None | | | | I13V, E35D, M36I, R41K, H69K, A71AV, L89M | CRF01_AE |
| AA056a_WG6 | AA056a_WG6 | JX447317 | None | | | | L10I, I13V, E35D, M36I, R41K, R57K, H69K, L89M, F99L | CRF01_AE |
| AA057a07L | AA057a07L | JX447325 | None | | | | I13V, I15V, E35D, M36I, R41K, Q61E, L63S, H69K, K70R, L89M | CRF01_AE |
| AA058a02L | AA058a02L | JX447339 | None | | | | I13V, K20R, E35D, M36I, R41K, C67CY, H69K, L89M | CRF01_AE |
| AA060a_WG8 | AA060a_WG8 | JX447367 | None | | | | I13V, G16E, K20R, E35D, M36I, R41K, H69K, K70R, L89M | CRF01_AE |
| AA061a10L | AA061a10L | JX447371 | None | | | | L10A, I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA062b03L | AA062b03L | JX447392 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA063a_WG35 | AA063a_WG35 | JX447408 | None | | | | I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89I | CRF01_AE |
| AA064a_WG4 | AA064a_WG4 | JX447415 | None | | | | I13V, G16E, E35D, M36I, N37S, R41K, K45R, R57K, H69K, N83S, L89M | CRF01_AE |
| AA065a07L | AA065a07L | JX447424 | None | | | | I13V, G16E, E35D, M36I, R41K, L63T, H69K, L89M | CRF01_AE |
| AA066a07L | AA066a07L | JX447440 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA067a_WG13 | AA067a_WG13 | JX447459 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA068a_23 | AA068a_23 | JX447469 | None | | | | I13V, G16E, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA069a02L | AA069a02L | JX447478 | None | | | | T12A, I13V, E35D, M36I, R41K, R57K, H69K, L89M | CRF01_AE |
| AA072a05 | AA072a05 | JX447504 | None | | | | L10V, I13V, I15V, E35D, M36I, R41K, L63P, H69K, L89M | CRF01_AE |
| AA073a_LH5 | AA073a_LH5 | JX447512 | None | | | | L10V, I13V, E35D, M36I, R41K, K43R, H69K, V82I, L89M | CRF01_AE |
| AA074a01L | AA074a01L | JX447524 | None | | | | I13V, E35D, M36I, R41K, H69K, K70R, I72V, L89M | CRF01_AE |
| AA075a_WG2 | AA075a_WG2 | JX447538 | None | | | | I13V, E35D, M36I, R41K, H69K, L89M | CRF01_AE |
| AA076a01L | AA076a01L | |