Protease Inhibitors

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Protease Inhibitors

Subtype	C
Gene	PR
Mutation	L63S
Rx	PI-naive
IncludeMixtures	No

References	112
Patients	345
Isolates	355

Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr)	Patient	Isolate	Acc#	PIs	PIMinorDRMs	OtherMut	Subtype
Lole (1999)	IND21301	ind21301	AF067156	None		T12S, K14R, I15V, L19T, M36I, R41K, L63S, H69K, L89M, I93L	C
Vergne (2000)	LVMP1308	LVMP1308	AJ287041	None		T12S, I15V, L19I, M36I, N37H, R41K, L63S, H69K, I93L	C
Eshleman (2001)	SE681	SE681	AF388154	None		T12S, K14R, I15V, M36I, R41K, L63S, I64IM, H69K, L89M, I93L	C
Hoelscher (2001)	97TZ08	97TZ08	AF361878	None		T12S, I13V, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93L	C
Koch (2001)	NK-3	NK-3	AY007732	None		I15V, M36I, R41K, L63S, H69K, L89LM, I93L	C
	NK-7	NK-7	AY007736	None		T12S, G16E, L19I, M36I, R41K, D60E, I62V, L63S, I64M, H69K, K70R, L89M, I93L	C
Dowling (2002)	MSA4077	MSA4077	AF457085	None		T12S, L19S, N37K, R41N, L63S, H69K, V77I, V82I, L89M, I93L	C
	KISII5011	KISII5011	AF457061	None		T12S, I15V, L19V, K20R, M36I, N37K, R41N, L63S, H69K, K70R, L89M, I93L	C
Gibb (2002)	DMG4	4_w0		None		K20R, M36I, N37D, R41K, L63S, H69K, L89M, I93L	C
	DMG62	62_w48		None	L76LF	I13IV, M36I, R41K, L63S, I64IL, H69K, L89M, I93L	C
Handema (2002)	H00ZM4789	H00ZM4789	AB081169	None		T12S, I15V, G17D, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
Hierholzer (2002)	SU009	SU009	AY102489	None		T12S, I15V, M36I, R41K, K45R, L63S, I64L, H69K, L89M, I93L	C
Novitsky (2002)	00BW1773	00BW1773	AF443095	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, T74A, L89M, I93L	C
	00BW1686	00BW1686	AF443093	None		I15V, L19V, M36I, N37S, R41K, L63S, H69K, K70R, L89M, I93L	C
Brindeiro (2003)	BRP2170	BRP2170	AY213490	None		I15V, E35D, M36I, R41K, R57K, Q61H, I62V, L63S, L89M	C
Gordon (2003)	ZA045p01	ZA045p01	AY136998	None		T12S, K14R, I15V, L19V, M36I, R41K, L63S, H69K, P79PS, L89M, I93L	C
Vergne (2003)	VL99SN142HPD	99SN142	AJ583715	None		T12S, I15V, L19T, K20R, M36I, R41K, Q61E, L63S, H69K, L89M, I93L	C
Yang (2003)	HH004.	HH004.	AB090998	None		T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93L	C
	HH029	HH029	AB090999	None		T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, I93L	C
Arroyo (2004)	01TZA355	01TZA355	AY253315	None		I13V, E35D, M36I, R41K, K45R, R57K, L63S, H69K, L89M	C
	01TZA306	01TZA306	AY253318	None		I13V, K14R, I15V, G16E, E35D, M36I, R41K, K43R, K45R, R57K, L63S, H69K, L89M	C
Deshpande (2004)	in87	in87	AY515799	None		T12TS, L19I, E35D, N37S, R41K, L63S, H69K, I72IT, L89M, I93L	C
	in52	in52	AY515767	None		T12S, I15V, L19T, M36I, R41K, L63S, H69K, L89M, I93L	C
	in117	in117	AY515827	None		T12S, L19I, N37S, R41RK, L63S, I64IM, H69K, V77VI, L89M, I93L	C
	in47	in47	AY515764	None		T12S, L19I, M36I, R41K, D60E, I62V, L63S, H69K, L89M	C
	in138	in138	AY515845	None		T12S, K14R, G16E, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	in108	in108	AY515818	None		T12S, L19I, M36I, R41K, K45R, L63S, H69K, L89M, I93L	C
	in102	in102	AY515812	None		T12S, K14R, I15V, L19T, E34G, M36I, R41K, L63S, H69K, L89M, I93L	C
Eshleman (2004)	SE681	SE681_7d	AY428711	None		Q7H, R8L, T12S, K14R, I15L, G16V, Q18L, D29A, M36I, R41K, L63S, H69K, L89M, I93L	C
Eshleman (2004)	2393960	2393960	AY444211	None		K14KR, I15V, L19V, E35D, M36I, R41K, L63S, H69K, I93L	C
Gulick (2004)	RG24	RG24w0		None		T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, I93L	C
Holguin (2004)	IN0132	IN0132	AY551447	None		T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	IN0090	IN0090	AY551458	None		T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93L	C
Arroyo (2005)	CO178	CO178	AY734556	None		T12S, K14R, I15V, L19V, M36I, R41K, L63S, H69K, I93L	C
Balakrishnan (2005)	YRG9	YRG9	AY787495	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	YRG17	YRG17	AY787503	None		T12S, K14R, I15V, L19LI, M36I, R41K, L63S, H69K, V82VI, L89M, I93L	C
Bellocchi (2005)	879	MT000879	GU199533	None		T12A, I15V, L19IV, K20R, N37S, R41K, L63S, H69K, K70Q, V77I, L89M, I93L	C
	1229	MT001229	GU199564	None		T12S, I15IV, G16GE, L19I, E35D, M36I, R41K, K45KR, D60DE, I62IV, L63S, I64IL, H69K, L89LM, I93L	C
	068	MC068	GU199571	None		T12S, I15V, L19I, M36I, R41K, K45KR, L63S, H69K, I93L	C
Bussmann (2005)	01BW3772S	01BW3772S	AY829298	None		L19T, K20R, L63S, H69K, V77I, L89M, I93L	C
	01BW4012S	01BW4012S	AY829301	None		T12S, I15V, G16E, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93L	C
	01BW3389N	01BW3389N	AY829320	None		T12N, I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93L	C
	01BW4271N	01BW4271N	AY829331	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	01BW3605N	01BW3605N	AY829322	None		T12S, I15V, L19I, N37S, R41K, L63S, H69K, V77I, L89M, I93L	C
Eshleman (2005)	21239	21239_6M	AY746390	None		T12S, I15V, G16E, L19I, M36I, R41K, L63S, H69K, I93L	C
Eshleman (2005)	ESH5105	ESH5105	AY756857	None		I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	ESH9036	ESH9036	AY756880	None		T12S, I15IV, L19T, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
	ESH11008	ESH11008	AY756882	None		T12S, I15V, L19I, K20KR, M36MI, N37S, L63S, H69K, V77I, L89LM, I93L	C
	ESH11048	ESH11048	AY756884	None	V82E	T12S, I15V, L19I, R41K, D60E, L63S, H69K, I93L	C
Grossman (2005)	17913	17913PR112		None		K14KE, I15V, M36I, R41K, L63S, H69K, L89M, I93L	C
	24110	24110PR335		None		I13V, I15V, M36I, R41K, L63S, I64V, H69K, L89M, I93L	C
	28733	28733PR486		None		M36I, R41K, L63S, I64M, H69K, L89M, I93L	C
Non-B Workgroup (2005)	UK663	UK663	AY900780	None		T12S, I15V, L19I, M36I, R41K, R57K, L63S, I64L, H69K, K70R, L89M, I93L	C
	UK1494	UK1494	AY900806	None		T12S, I15V, L19I, E35D, M36I, R41K, L63S, H69K, V77I, L89M, I93L	C
	UK2047	UK2047	AY900837	None		I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
Saad (2005)	SM_01YE394	01YE394	AY790001	None		M36I, R41K, L63S, H69K, L89M, I93L	C
Weber (2005)	F88026	F88026	AY677467	None		T12S, I15V, L19I, M36I, N37D, K43R, L63S, H69K, I93L	C
	3008879	3008879	AY677491	None		I15V, L19I, M36I, N37Q, R41K, L63S, H69K, L89M, I93L	C
	F93511	F93511	AY714419	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93L	C
Bessong (2006)	POB_01PB16ZA	01PB16ZA	DQ222248	None		T12S, I15V, G16E, L19I, M36T, N37T, P39S, R41K, D60E, Q61E, L63S, H69K, T74A, L89M, I93L	C
	POB_02TS17ZA	02TS17ZA	DQ222267	None		I15V, L19T, K20R, E35D, M36I, N37D, L63S, H69K, K70R, P79A, L89M, I93L	C
	POB_02TS26ZA	02TS26ZA	DQ222272	None		T12S, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
Lindstrom (2006)	SIIDC0208	SIIDC0208		None		L19I, M36V, R41K, L63S, I64L, H69K, K70KR, L89M, I93L	C
Parreira (2006)	PG22	PG22	AM071421	None		T12S, I15V, L19I, K20R, M36L, R41K, L63S, H69K, K70Q, L89M, I93L	C
Rodrigues (2006)	BR04RS155	BR04RS155	DQ070559	None		I15V, L19V, M36I, N37K, R41N, L63S, H69K	C
Rousseau (2006)	Pt1	02PS001MB1	DQ275648	None		I15V, L19I, M36V, N37S, P39Q, L63S, H69K, V82I, I93L	C
	Pt90	03SK033B2	AY772692	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93L	C
	Pt102	03SK062B1	DQ164113	None		T12S, I15V, L19V, N37K, R41I, L63S, H69K, V77I, L89M, I93L	C
	Pt117	03SK097B1	AY878060	None		L19T, M36I, R41K, D60E, L63S, H69K, I93L	C
	Pt195	04SK164B1	DQ056405	None		L10V, T12S, I15V, G16E, L19I, M36I, N37S, R41K, L63S, H69K, I93L	C
	Pt205	04SK175B1	DQ164129	None		I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
Santos (2006)	C166	C166	DQ191007	None		L19Q, M36I, N37K, R41N, L63S, H69K, L89M, I93L	C
	PA209	PA209	DQ343984	None		N37K, R41N, L63S, I64M, H69K, L89M, I93L	C
	PA211	PA211	DQ343986	None		T12K, I15V, M36I, N37K, R41N, L63S, H69K, L89M, I93L	C
Vidal (2006)	NV_LBFE069	02.LBFE069	AM041006	None		T12A, I15V, K20R, E35D, M36I, N37D, K45R, R57K, L63S, H69K, L89M, I93L	C
	NV_LBS048	02.LBS048	AM041002	None		I13V, K14I, I15V, L19Q, K20R, M36I, R41K, D60E, Q61H, L63S, H69K, L89M, I93L	C
Brumme (2007)	1536	PRRT_1536	EF368846	None		T12S, I15V, L19I, K20R, E35D, M36I, R41K, D60E, Q61E, L63S, H69K, L89M, I93L	C
Church (2007)	5105	5105	EF602607	None		I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	7018	7018	EF602610	None		T12S, I15V, L19V, M36I, R41K, L63S, I64M, H69K, L89M, I93L	C
	9036	9036	EF602622	None		T12S, I15V, L19T, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
	11004	11004	EF602623	None		I15V, L19I, M36I, P39PT, R41K, L63S, H69K, L89M, I93L	C
	11008	11008	EF602624	None		T12S, I15V, L19I, K20KR, N37S, L63S, H69K, V77I, L89LM, I93L	C
Kassu (2007)	ETH-G-124	G-124	AB285804	None		L10V, T12TA, I15V, L19Q, K20R, M36I, R41K, K43R, L63S, H69K, I93L	C
Novitsky (2007)	1467	1467_0493	EF026205	None		I15V, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93L	C
		1467_1383	EF026206	None		K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
		1467_1415	EF026207	None		K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
		1467_1693	EF026208	None		K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	1604	1604_0753	EF026215	None		I15V, L19I, M36L, D60E, L63S, H69K, L89M, I93L	C
Sen (2007)	T091	NPT91-PL	EF186957	None		T4S, Q7E, T12S, I15V, L19I, M36I, R41K, Q61H, L63S, E65D, H69K, I72T, L89M	C
Soundararajan (2007)	TRC8	TRC8	EF491930	None		T12S, I13V, I15V, L19I, K20R, M36I, G40G*, R41K, L63S, H69K, I72T, I93L	C
	TRC14	TRC14	EF491935	None	L33F	T12S, K14R, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	TRC46	TRC46	EF491947	None		T12S, K14R, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93L	C
	TRC10	TRC10	EF491931	None		I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
Vicenti (2007)	4921	68542R	EF376501	None		T12S, I15V, L19IT, M36L, R41K, L63S, H69K, I93L	C
Vidal (2007)	U1817	02BU.U1817	AM260226	None		T12S, I15V, L19I, M36I, N37K, R41N, L63S, H69K, I93L	C
	U2335	02BU.U2335	AM260244	None		T12S, I15V, L19I, M36I, N37K, R41N, L63S, H69K, K70R, V82I, L89M, I93L	C
von Wyl (2007)	101	5053478	EF449917	None		L10V, L19I, A22V, L23F, M36I, L63S, H69K, L89M, I93L	C
Zhong (2007)	D0015	05CN_015	EF199562	None		T12S, I15V, G16A, L19I, M36V, R41K, D60E, L63S, H69K, K70R, L89M, I93L	C
	D0068	05CN_068	EF199597	None		T12S, I15V, L19T, M36V, R41K, D60E, L63S, H69K, L89M, I93L	C
	D0069	05CN_069	EF199598	None		T12S, I15V, L19M, M36V, R41K, D60E, L63S, H69K, L89M, I93L	C
Arora (2008)	57	PI-57		None		I15V, G16X, L19T, M36L, R41K, D60E, L63S, I64L, H69K, L89M, I93L	C
Deho (2008)	159	159	EU244649	None		T12S, I15V, L19I, M36I, R41K, D60E, Q61D, L63S, H69K, L89M, I93L	C
	2	2	EU244660	None		T12S, I15V, L19V, M36I, D60E, Q61E, L63S, H69K, L89M, I93L	C
Jacobs (2008)	1826	1826	EF602299	None		T12S, I15V, L19V, M36I, L63S, H69K, L89M, I93L	C
Kamoto (2008)	MW4	MW4	JQ617132	None		I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	MW25	MW25	JQ617144	None		I15V, L19I, N37T, R41K, L63S, H69K, A71T, I93L	C
	MW37	MW37	JQ617153	None		I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	MW40	MW40	JQ617156	None		I15V, L19I, K20R, E35D, M36I, R41K, D60E, Q61E, L63S, H69K, I93L	C
	MW41	MW41	JQ617157	None		I15V, L19I, M36I, R41K, L63S, H69K, T74A, L89M, I93L	C
	MW45	MW45	JQ617161	None		K14R, I15V, L19T, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93L	C
	MW47	MW47	JQ617163	None		K14N, I15V, L19T, K20R, M36I, Q61E, L63S, H69K, L89M, I93L	C
Lahuerta (2008)	P64838	P64838_99	EF407746	None		T12A, I15V, L19I, N37S, R41K, L63S, H69K, K70Q, V77I, L89M, I93L	C
Lall (2008)	G39	G39-AFMC22	EU158885	None		T12PS, K14R, I15V, L19IT, M36I, R41K, L63S, H69K, V82VI, I93L	C
	G40	G40-AFMC23	EU158886	None		T12PS, K14R, I15V, L19IT, M36I, R41K, L63S, H69K, V82VI, I93L	C
Marconi (2008)	SW014	sw014	EU308031	None		T12P, I15V, L19T, K20KR, E35D, M36I, N37E, R41RK, D60E, Q61E, L63S, H69K, L89M, I93L	C
Matthews (2008)	A373	A373	FJ199572	None		T12S, I15V, L19V, M36T, R41K, L63S, H69K, L89M, I93L	C
	J120M	J120M	FJ199576	None		L10I, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93L	C
	PS001	PS001	FJ199584	None		I15V, L19I, M36V, N37S, P39Q, L63S, H69K, V82I, I93L	C
	PS085	PS085	FJ199660	None		I15V, L19T, N37S, R41K, Q61D, L63S, H69K, V77I, L89M, I93L	C
	PS201	PS201	FJ199757	None		T12S, K14R, I15V, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93L	C
	PS399	PS399	FJ199806	None		T12S, I15V, L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93L	C
	PS425	PS425	FJ199824	None		I15V, L19I, M36I, R41K, L63S, H69K, I93L	C
	SK033	SK033	FJ199860	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93L	C
	SK062	SK062	FJ199874	None		T12S, I15V, L19V, N37K, R41I, L63S, H69K, V77I, L89M, I93L	C
	SK097	SK097	FJ199891	None		L19T, M36I, R41K, D60E, L63S, H69K, I93L	C
	SK175	SK175	FJ199946	None		I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
Nyombi (2008)	TMS020	TMS020	EU251798	None		T12S, I13V, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
	TMS029	TMS029	EU251803	None		T12S, I15V, G16E, L19I, E35G, M36I, N37S, R41K, L63S, H69K, L89M, I93L	C
Pillay (2008)	DR80	03ZA.DR80	AY589924	None		T12TS, I15V, L19IM, K20R, M36L, N37S, R41K, Q61N, L63S, H69K, V77I, L89M, I93L	C
Ayouba (2009)	2911	2911HALDPR	GQ351995	None		T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	3076	3076HALDPR	GQ351981	None		G16E, L19I, M36I, N37S, R41K, L63S, H69K, I93L	C
Brumme (2009)	V2537	V2537	GQ372203	None		T12S, I15V, G17D, L19I, M36I, N37K, R41K, Q61D, L63S, H69K, I93L	C
Cuevas (2009)	X2547_1	X2547_1	GU326128	None		T12S, I15V, L19I, E35D, M36I, N37D, R41K, Q61A, L63S, H69K, L89M, I93L	C
Hosseinipour (2009)	8732	8732	GQ228218	None		T12S, K14KR, I15V, L19I, M36I, N37D, R41K, L63S, H69K, I93L	C
	9405	9405	GQ228242	None		T12S, I13V, I15V, L19I, K20R, M36I, Q61E, L63S, H69K, L89M, I93L	C
	9458	9458	GQ228250	None		T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, I72V, L89M	C
	9456	9456	GQ228277	None		W6W*L, T12S, I15V, L19T, E35D, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
	8514	8514	GQ228287	None		T12S, I15V, L19I, M36L, R41K, D60E, I62V, L63S, I64M, H69K, L89M, I93IL	C
Iqbal (2009)	100025	100025	EU449521	None		T12S, K14KR, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	100032	100032	EU449528	None		T12S, K14R, I15V, L19I, M36V, R41K, L63S, H69K, I72IV, L89M, I93L	C
	100068	100068	EU449539	None		T12S, K14R, I15V, L19I, E21EK, M36I, R41K, L63S, H69K, I93L	C
	100127	100127	EU449542	None		T12S, K14R, I15V, G16E, L19I, M36T, R41K, L63S, H69K, L89M, I93L	C
Kandathil (2009)	VL07_272	VL07_272	EU683752	None		T12S, I15V, L19I, M36I, R41K, L63S, I64M, H69K, L89M, I93L	C
	CD07_331	CD07_331	EU683758	None		I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	CD07_373	CD07_373	EU683759	None		T12S, I15V, L19I, M36I, R41K, D60E, I62V, L63S, I64L, H69K, L89M, I93L	C
Kandathil (2009)	CD06_595	CD06_595	EU683781	None		K14R, I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93L	C
	VL06_130	VL06_130	EU744912	None		T12S, I15V, G16E, L19I, M36V, R41K, L63S, H69K, I93L	C
	CD06_411	CD06_411	EU683769	None		T12X, I15V, L19I, E35D, M36I, R41K, L63S, H69K, I93L	C
	CD06_468	CD06_468	EU683773	None		I15V, G16E, L19X, M36I, K45R, Q61E, L63S, H69K, I93L	C
	VL05_063	VL05_063	EU683774	None		T12S, K14R, I15V, L19I, M36I, R41K, K45R, D60E, I62V, L63S, H69K, L89M	C
Kassaye (2009)	TC-41	TC41_2004	FJ445734	None		I15V, G17D, L19I, E35D, M36I, R41K, K45R, R57K, L63S, H69K, L89M, I93L	C
	TC-47	TC47_2003	FJ445703	None		I15V, L19IT, M36I, R41K, I62V, L63S, H69K, A71T, I72E, L89M, I93L	C
		TC47_2004	FJ445723	None		I15V, L19T, M36I, R41K, I62V, L63S, H69K, A71T, I72E, I93L	C
	TC-63	TC63_2003	FJ445732	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
Rajesh (2009)	N37	TRCNPR37	FJ595400	None		T12S, I15V, L19I, M36I, R41K, D60DE, I62IV, L63S, I64L, H69K, L89M, I93L	C
	N47	TRCNPR47	FJ595410	None		T12S, I15V, L19I, M36L, N37S, L63S, H69K, V82I, L89M, I93L	C
	N12	TRCNPR12	FJ595375	None		T12S, K14KR, L19IT, K20KR, M36MI, R41K, L63S, H69K, L89LM, I93L	C
	N98	TRCNPR98	FJ595461	None		L10LV, T12S, I15V, G16E, L19I, M36I, N37D, Q61E, L63S, H69K, I72IT, I93L	C
	F2	TRCFPR2	FJ595464	None		T12S, I15V, L19I, M36I, L63S, H69K, I93L	C
	F8	TRCFPR8	FJ595470	None		T12A, I15V, G16E, L19I, M36I, R41K, L63S, H69K, I93L	C
Tu (2009)	2	PBMC2	EU518252	None		T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89I, I93L	C
	46	PBMC46	EU518287	None		T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93L	C
	50	PBMC50	EU518291	None		T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93L	C
		plasma50	EU518340	None		T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93L	C
	57	PBMC57	EU518297	None		T12S, I15V, L19I, M36I, N37D, R41K, D60E, L63S, I64IM, H69K, L89M, I93L	C
		plasma57	EU518346	None		T12S, I15V, L19I, M36IV, N37D, R41K, D60E, L63S, I64IM, H69K, L89M, I93L	C
Vercauteren (2009)	pt1955	1540027297	GQ399069	None		T12S, L19V, E34EG, E35ED, M36I, R41K, L63S, H69K, I93L	C
	pt1824	2367265021	GQ399200	None		I15V, G16E, L19I, N37K, R41N, D60E, L63S, H69K, I72IM, V77I, L89M, I93L	C
	pt1630	3584369141	GQ399394	None		I15V, M36I, R41K, L63S, I64IV, H69K, L89M, I93L	C
	pt1358	5077812830	GQ399666	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	pt863	7ouKxGxYB3	GQ400161	None		T12TA, K14KR, I15V, G16E, M36I, R41K, L63S, H69K, I72T, I93L	C
	pt593	9431363102	GQ400431	None		T12S, G17D, L19I, M36I, R41K, L63S, H69Q, L89M, I93L	C
	pt561	9586931726	GQ400463	None		T12S, G17D, L19I, M36I, R41K, I62IV, L63S, H69Q, L89M, I93L	C
	pt75	VYX2c41Zvw	GQ400949	None		I15V, L19T, M36I, N37AT, L63S, H69K, L89M, I93L	C
Wallis (2009)	GP08729512	GP08729512		None		T12S, I15V, L19I, K20R, M36I, N37D, R41K, I62V, L63S, H69K, V75I, L89M, I93L	C
	GT00565939	GT00565939		None		T12S, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
	TJC2367412	TJC2367412		None		K14R, I15V, L19I, M36I, R41K, D60E, Q61E, L63S, H69K, L89M, I93L	C
	TJC2366809	TJC2366809		None		I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93L	C
	TJC2377938	TJC2377938		None		T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
	TJC2382138	TJC2382138		None		L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	2305694	2305694		None		I15V, L19T, M36I, R41K, L63S, H69K, I93L	C
	GT00050233	GT00050233		None		T12S, I15V, L19I, M36I, R41K, K43KR, L63S, H69K, I93L	C
	TJC2393616	TJC2393616		None		T12S, I15V, L19T, D29DN, E35K, M36I, R41K, L63S, H69K, L89M, I93L	C
	TJC2409904	TJC2409904		None		T12S, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	TJC2378119	TJC2378119		None		L10M, I13V, L19V, M36I, R41K, L63S, H69K, I72E, L89M, I93L	C
	TJC2389178	TJC2389178		None		I15V, L19I, M36I, R41K, L63S, H69K, I93L	C
Yu (2009)	014	07CNGD014	FJ387041	None		T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
	015	07CNGD015	FJ387042	None		T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
Chaturbhuj (2010)	1-005	1-005	FJ878937	None		T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	1-017	1-017	FJ878946	None		T12S, I15V, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93L	C
Diop-Ndiaye (2010)	142HPD	142HPD	FN599687	None		T12S, I15V, L19T, K20R, M36I, R41K, Q61E, L63S, H69K, L89M, I93L	C
Djoko (2010)	613	CD0866	FR666613	None		L19I, N37S, R41K, L63S, H69K, V77I, L89M, I93L	C
Gonzalez (2010)	914_M00m	914_M00m	GQ427114	None		L10V, I15V, Q18H, L19I, M36I, N37S, R41K, L63S, H69K, A71T, P79S, I93L	C
	2919_M30m	2919_M30m	GQ427129	None		I15V, L19I, M36I, R41K, Q61G, L63S, H69K, T74S, L89M, I93L	C
	CP6	CP6	GQ433809	None		T12S, I15V, G16E, L19I, D60E, L63S, H69K, V77I, L89M, I93L	C
	KT5	KT5	GQ433833	None		T12S, K14R, G17D, L19I, K20R, M36I, N37K, R41K, L63S, H69K, L89M, I93L	C
Hamers (2010)	300033	CP076300033	HM119627	None		T12S, I15V, L19T, E35D, M36I, R41K, L63S, H69K, I93IL	C
	300065	CP076300065	HM119653	None		T12S, L19I, M36I, R41K, I62IV, L63S, H69K, I93L	C
	300130	CP076300130	HM119706	None		K14R, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93L	C
	300194	CP076300194	HM119765	None		L19V, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	300204	CP076300204	HM119774	None		I15V, L19I, E35D, M36I, N37ND, R57RK, L63S, H69K, L89M, I93IL	C
	300234	CP076300234	HM119798	None		K14R, I15V, G16E, L19I, M36I, R41K, L63S, H69K, L89KR, I93L	C
	300413	CP076300413	HM119837	None		T12S, K14R, I15V, L19I, K20R, E35D, M36I, R41K, Q61H, L63S, H69K, K70Q, L89M, I93L	C
	300421	CP076300421	HM119845	None		T12S, K14R, I15V, L19I, K20R, E35D, M36I, R41K, Q61H, L63S, H69K, K70Q, L89M, I93L	C
	300422	CP076300422	HM119846	None		T12S, L19T, K20R, M36I, N37NS, R41K, L63S, H69K, L89M, I93L	C
	300432	CP076300432	HM119856	None		T12S, I13V, I15V, L19I, M36I, R41K, Q61H, L63S, H69K, L89M, I93L	C
	300438	CP076300438	HM119860	None		T12S, L19T, M36I, N37E, P39S, I62IV, L63S, H69KQ, A71V, I72T, I93L	C
	300449	CP076300449	HM119870	None		T12S, G16E, L19I, M36I, R41K, Q61E, I62IV, L63S, I64M, H69K, L89M, I93L	C
	300452	CP076300452	HM119873	None		T12A, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	300455	CP076300455	HM119876	None		I15V, L19T, E35D, M36I, R41K, K45R, R57RK, D60E, Q61E, L63S, H69K, L89I, I93L	C
	300470	CP076300470	HM119890	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	300495	CP076300495	HM119914	None		T12S, L19V, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
	300504	CP076300504	HM119921	None		T12S, I15V, L19I, M36I, N37D, R57K, L63S, H69K, A71T, I93L	C
	300548	CP076300548	HM119959	None		L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93L	C
	300598	CP076300598	HM119999	None		I15V, L19I, M36I, L63S, H69K, L89M, I93L	C
	300626	CP076300626	HM120025	None		I15V, L19T, M36I, R41K, L63S, H69K, I93L	C
	300667	CP076300667	HM120058	None		L19I, M36I, N37S, R41K, L63S, I64IM, H69K, L89LM, I93L	C
	300674	CP076300674	HM120064	None		L19V, E35D, M36I, R41K, D60DE, Q61QE, L63S, H69K, L89M, I93L	C
	300685	CP076300685	HM120073	None		T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	302361	CP076302361	HM120087	None		L19M, M36I, R41K, L63S, H69K, V82I, L89M, I93L	C
	302417	CP076302417	HM120114	None		I15V, L19LI, M36I, R41K, L63S, H69K, I93L	C
	302426	CP076302426	HM120120	None		I13V, I15V, L19I, M36I, N37S, R41K, L63S, H69K, I72V, T74S, L89M, I93L	C
Papathanasopoulos (2010)	17503	07ZA17503	GU253413	None		T12A, K14R, I15V, G16E, L19I, E35D, M36I, N37D, R41K, K45R, D60E, Q61E, L63S, H69K, L89I, I93L	C
Wright (2010)	164	SK164	HM593171	None		L10LV, T12S, I15V, G16E, L19I, M36I, N37S, R41K, L63S, H69K, I93L	C
	175	SK175	HM593183	None		I15V, L19LI, M36I, R41K, L63S, H69K, I93L	C
	18	SK18	HM593187	None		T12S, I15V, L19I, K20R, E35D, M36I, R41K, Q61H, L63S, H69K, K70Q, L89M, I93L	C
	259	SK259	HM593263	None		T12S, I15V, L19I, E35D, M36I, R41K, R57RK, L63S, H69K, I72IV, T74TS, L89M, I93L	C
	327	SK327	HM593331	None		T12TS, I15IV, L19I, M36L, N37S, R41K, L63S, I64M, H69K, L89M, I93L	C
	33	SK33	HM593334	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, I72IM, V82VI, L89LM, I93L	C
	380	SK380	HM593386	None		T12S, I15V, L19I, N37S, L63S, H69K, L89M, I93L	C
	384	SK384	HM593390	None		T12S, K14KR, I15IV, G16E, L19IT, K20KR, E35D, M36I, R41K, L63S, H69K, L89IM, I93L	C
	437	SK437	HM593446	None		T12S, I15V, L19I, M36I, R41K, L63S, I64M, H69K, K70KR, L89M, I93L	C
	438	SK438	HM593447	None		T12S, I15V, L19IV, E35D, M36I, N37NS, R41K, L63S, H69K, L89M, I93L	C
	97	SK97	HM593508	None		K14KR, I15IV, L19IT, M36I, R41K, L63S, H69K, I93L	C
Yang (2010)	2010693437	2010693437	JQ616902	None		T12S, G16E, L19I, K20R, M36I, N37Q, L63S, H69K, V77I, L89M, I93L	C
Zhang (2010)	0616	CNsd0616	GQ443571	None		K14R, L19V, M36I, R41K, L63S, H69K, K70R, L89M, I93L	C
Bussmann (2011)	B0736	B0736	JQ617018	None		I15V, Q18L, L19V, E35D, M36I, R41K, L63S, H69K, I72IV, L89M, I93L	C
	B0592	B0592	JQ617084	None		I15V, L19I, M36I, L63S, H69K, I93L	C
de Medeiros (2011)	Pat002	RS017	JF487831	None		K14R, I15V, M36I, N37K, R41N, L63S, H69K, L89M, I93L	C
	Pat015	RS120	JF487844	None		I15V, M36I, N37K, R41N, L63S, H69K, V82I, L89M, I93L	C
Deshpande (2011)	Pat041	in1125	JF414429	None	Q58E	T12S, I15V, G16GE, Q18QH, L19I, K20R, E35D, M36I, R57RK, D60DE, Q61QH, L63S, H69K, L89M, I93L	C
	Pat017	in1091	JF414452	None		T12S, I15V, L19I, M36I, R41K, L63S, I64L, H69K, I93L	C
Graf (2011)	SC69	SC69	JF774022	None		I15V, M36I, N37K, R41N, L63S, H69K, I93L	C
Hamers (2011)	CP076301696	CP076301696	HQ993692	None		I15V, L19T, E35ED, M36I, R41K, L63S, H69K, L89M, I93L	C
	CP076305077	CP076305077	HQ994311	None		L19I, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93L	C
	CP076305085	CP076305085	HQ994316	None		T12TS, I15V, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93L	C
	CP076305113	CP076305113	HQ994336	None		T12S, L19IT, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93L	C
	CP076301437	CP076301437	HQ994412	None		I13V, K14N, L19I, K20R, M36I, N37NS, R41K, L63S, H69K, K70KR, L89M, I93L	C
	CP076301448	CP076301448	HQ994418	None		T12P, I15V, L19I, N37S, R41K, L63S, H69K, V77I, L89M, I93L	C
	CP076301480	CP076301480	HQ994443	None		L10X, V11VF, I15V, G17D, L19AV, K20R, E35D, M36I, R41K, K45R, L63S, H69K, T74TA, L89M, I93L	C
	CP076301520	CP076301520	HQ994466	None		I15V, L19V, M36L, N37S, R41RK, K45R, L63S, H69K, L89M, I93L	C
	CP076302166	CP076302166	HQ994518	None		T12S, K14R, I15V, L19IT, K20M, N37S, R57K, I62V, L63S, H69K, L89M, I93L	C
	CP076301013	CP076301013	HQ994567	None		T12S, I15V, L19I, K20R, E35D, M36I, R41K, K45R, L63S, H69K, V82I, L89M, I93L	C
	CP076301072	CP076301072	HQ994594	None		T12S, I15V, L19I, K20R, M36I, N37S, R41K, L63S, H69K, V77I, L89M, I93L	C
	CP076301075	CP076301075	HQ994596	None		T12S, I15V, L19IT, M36I, L63S, H69K, L89M, I93L	C
	CP763A03425	CP763A03425	HQ994673	None		I13V, I15V, G16E, L19I, M36I, R41K, K45R, Y59F, D60E, Q61N, L63S, H69K, L89M, I93L	C
	CP763A03678	CP763A03678	HQ994694	None		L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89LM, I93L	C
	CP076300946	CP076300946	HQ994721	None		I15V, L19I, K20R, M36I, R41K, L63S, H69K, K70Q, I72IV, V77I, V82VI, L89LM, I93L	C
	CP076300983	CP076300983	HQ994744	None		I15V, L19T, K20R, M36I, L63S, H69K, K70Q, I72IV, V77I, L89M, I93L	C
	CP076301043	CP076301043	HQ994774	None		T12S, I15V, L19I, K20R, M36I, N37NDGS, L63S, H69K, K70Q, V77I, V82I, L89I, I93L	C
	CP763A01781	CP763A01781	HQ994877	None		L10I, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	CP763A03354	CP763A03354	HQ994893	None		I15V, L19V, M36I, R41K, L63S, H69K, L89LFIM, I93L	C
	CP076302434	CP076302434	HQ995493	None		T12S, I15V, L19I, E35D, M36I, R41K, K45R, R57RK, L63S, H69K, L89M, I93L	C
Kasang (2011)	17192	17192	HM572398	None		T12S, I15V, Q18H, L19I, M36L, N37R, R41N, Q61N, L63S, I64IL, H69K, V82I, L89M, I93L	C
	2726	2726	HM572402	None		T12S, I15V, L19IV, L23LF, M36I, N37K, R41N, L63S, H69K, L89LM, I93L	C
Manasa (2011)	1002871	1002871	JN664997	None		L10I, T12S, L19V, M36I, R41K, Q61H, L63S, H69K, L89M, I93L	C
	1003634	1003634	JN665001	None		T12S, I15V, L19V, M36I, R57K, Q61N, L63S, C67F, H69K, L89M, I93L	C
	1005100	1005100	JN665015	None		T12S, I15V, L19I, K20R, E35D, M36I, R41K, K45R, D60E, Q61E, L63S, H69K, L89M, I93L	C
	1009139	1009139	JN665032	None		L19T, M36I, R41K, L63S, H69K, I93L	C
	1009328	1009328	JN665035	None		T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63S, H69K, L89M, I93L	C
Nwobegahay (2011)	BBVCT04ZA	BBVCT04ZA	GU139579	None		T12S, I15V, L19I, K20R, M36I, R41K, R57K, L63S, H69K, I93L	C
	BBVCT09ZA	BBVCT09ZA	GU139582	None		T12S, I15V, L19I, K20R, M36I, R41K, R57K, L63S, H69K, I93L	C
	BBVCT15ZA	BBVCT15ZA	GU139588	None		T12S, I15V, L19I, K20R, M36I, R41K, R57K, D60G, L63S, H69K, I93L	C
	BBVCT73ZA	BBVCT73ZA	GU139616	None		T12S, K14R, I15V, L19I, E35D, M36I, R41K, D60E, Q61E, L63S, H69K, L89M, I93L	C
	BBVCT77ZA	BBVCT77ZA	GU139619	None		I15V, L19T, K20R, E35D, M36I, R57K, L63S, H69K, L89M, I93L	C
	BBVCT05ZA	BBVCT05ZA	GU139621	None		L10I, T12S, I15V, L19I, M36I, R41K, L63S, H69K, K70R, I72T, I93L	C
Nwobegahay (2011)	08MB37ZA	08MB37ZA	GU188822	None		T12S, I15V, G16E, L19I, M36I, L63S, H69K, L89M, I93L	C
	08MB52ZA	08MB52ZA	GU188834	None		T12S, K14R, I15V, L19I, M36L, R41K, L63S, H69K, L89M, I93L	C
Parboosing (2011)	Pat052	HRS8	HQ844574	None		L10V, T12S, L19I, K20R, M36I, R41K, R57K, L63S, H69K, T74S, L89M, I93L	C
	Pat044	HRS44	HQ844582	None		T12S, I15V, L19V, E35D, M36I, R41K, L63S, H69K, I93L	C
	Pat040	HRS52	HQ844586	None		L10LI, T12S, I15V, L19T, M36I, R41K, L63S, H69K, L89LM, I93L	C
	Pat011	HRS204	HQ844615	None		T12S, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93L	C
	Pat005	HRS45	HQ916287	None		T12S, I15V, L19I, M36I, R41K, L63S, H69Q, L89M, I93L	C
Shahid (2011)	3P-019	3P-019	JN023037	None		T12S, K14R, I15V, L19T, M36I, R41K, L63S, H69K, I93L	C
Thorat (2011)	Pat007	IN-NARI-HIVDR-5-007	HQ166845	None		T12S, I15V, L19T, M36I, R41K, L63S, H69K, L89M, I93L	C
	Pat014	IN-NARI-HIVDR-5-014	HQ166852	None		T12S, I15V, L19I, M36MI, R41K, L63S, H69K, L89M, I93L	C
	Pat027	IN-NARI-HIVDR-5-027	HQ166865	None		L19I, M36MIL, N37S, R41K, L63S, H69K, L89M, I93L	C
	Pat040	IN-NARI-HIVDR-5-040	HQ166877	None		T12S, L19I, E35D, M36I, R41K, L63S, H69K, K70R, L89M, I93L	C
	Pat048	IN-NARI-HIVDR-5-048	HQ166884	None		T12S, I15V, L19T, M36I, R41K, L63S, H69K, I93L	C
van Zyl (2011)	A101	A101	JN638066	None		T12S, I15V, L19I, K20R, M36I, R41K, I62V, L63S, H69K, L89M, I93L	C
	A123	A123	JN638079	None		T12S, I15V, L19I, M36I, R41K, L63S, I64V, H69K, K70R, I93L	C
	A135	A135	JN638082	None		T12S, I13V, I15V, L19T, K20R, M36I, L63S, H69K, L89M, I93L	C
	A151	A151	JN638089	None		M36I, N37D, R41K, L63S, H69K, I93L	C
	A163	A163	JN638094	None		I13IV, K14R, I15V, L19LI, M36MI, N37NS, R41K, I62IV, L63S, H69K, L89M	C
	A164	A164	JN638095	None		I15V, L19M, M36I, R41K, L63S, H69K, L89M, I93L	C
	A200	A200	JN638120	None		I15V, L19I, N37S, R41K, L63S, I64M, H69K, V77I, I93L	C
	A201	A201	JN638121	None		T12S, K14R, I15V, G16E, L19I, N37S, R41K, L63S, H69K, V77I, I93L	C
	A268	A268	JN638160	None		L10M, L19I, E35D, R41K, R57RK, L63S, H69Q, L89M, I93L	C
	A272	A272	JN638164	None		T12S, I15V, L19I, M36I, N37D, R41K, L63S, H69K, T74S, I93L	C
	A280	A280	JN638171	None		T12S, I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93L	C
	A310	A310	JN638189	None		L19I, M36I, R41K, L63S, I64L, H69K, L89M, I93L	C
	A72	A72	JN638221	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	A79	A79	JN638224	None		T12S, I13V, I15V, L19T, K20R, M36I, Q61E, L63S, H69K, L89M, I93L	C
Wright (2011)	AS1-0323B2	AS1-0323B2	HQ696791	None		K14M, I15V, L19T, K20R, E35EK, M36I, R41K, I62V, L63S, I64L, H69K, L89I, I93L	C
	AS2-0016B2	AS2-0016B2	HQ696795	None		T12S, I15V, L19I, E35D, M36I, R41K, K45R, L63S, I64M, H69K, L89M, I93L	C
	AS2-0184B2	AS2-0184B2	HQ696800	None		I15V, L19I, K20R, M36I, P39PS, R41K, L63S, H69K, V77I, L89M, I93L	C
	OQ_052	OQ_052	HQ696834	None		I15V, L19I, K20R, M36I, R41T, L63S, H69K, V77I, L89M, I93L	C
	QA_006	QA_006	HQ696843	None		T12S, I15V, L19V, M36I, N37S, R41K, Q61E, L63S, H69K	C
	AS2-0016B8	AS2-0016B8	HQ696853	None		T12S, I15V, L19I, E35D, M36I, R41K, K45R, L63S, I64M, H69K, L89M, I93L	C
Ye (2011)	BJ07229	BJ07229	JF906588	None		T12S, I15V, L19I, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93L	C
Ye (2011)	CNBJ583	CNBJ583	HQ007342	None		T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
Zeng (2011)	K10	K10	JF505515	None		T12S, I15V, L19I, E35D, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
	K7	K7	JF505524	None		T12S, L19I, M36I, R41K, K45R, R57K, D60E, L63S, H69K, L89M, I93L	C
	K82	K82	JF505610	None		T12S, I15V, L19I, M36L, R41K, D60E, L63S, H69K, L89M, I93L	C
Chen (2012)	YN09DH0092	YN09DH0092	JQ658558	None		T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	YN09DH0101	YN09DH0101	JQ658565	None		T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	YN10DH0028	YN10DH0028	JQ658653	None		T12S, I13V, K14R, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
	YN10DH0077	YN10DH0077	JQ658698	None		T12S, I15V, L19I, E35EDG, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
da Silveira (2012)	BRMS51	BRMS51	JF342301	None		T12P, I15V, M36I, N37K, R41N, L63S, I64L, H69K, L89M, I93L	C
De Gascun (2012)	IRL06358	IRL06358	JN622824	None	Q58E	T12S, I15V, L19T, K20R, D29DV, E35D, M36I, R41K, P44PL, I62V, L63S, H69K, V82VI, L89M, I93L	C
	IRL10939	IRL10939	JN622828	None		T12S, I13IM, L19V, M36MI, R41K, K45KR, L63S, H69K, V77I, L89M, I93L	C
	IRL12687	IRL12687	JN622903	None		T12S, I15V, L19I, K20R, M36IL, N37NS, P39PS, R41K, L63S, H69K, L89M	C
	IRL49477	IRL49477	JN622930	None		T12S, I15GV, L19I, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L, N98NK	C
	IRL50716	IRL50716	JN622971	None		T12P, I15V, L19IT, K20R, E35D, M36IV, R41K, D60E, Q61E, L63S, H69K, L89M, I93L	C
	IRL57990	IRL57990	JN623028	None		T12TS, L19V, R41K, L63S, H69K, V77I, L89M, I93L	C
	IRL10512	IRL10512	JN623039	None		I15V, L19I, M36I, N37D, R41K, L63S, H69K, I72IM, L89LM, I93L	C
Hassan (2012)	RS09000940	RS09000940	HQ441682	None		I15V, M36I, N37K, R41N, L63S, H69K, T74S, L89M, I93L	C
Hingankar (2012)	IN-NARI-4-013	IN-NARI-4-013	JN314904	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
	IN-NARI-4-028	IN-NARI-4-028	JN314917	None		I15V, G16E, L19I, M36I, L63S, H69K, L89LM, I93L	C
	IN-NARI-4-035	IN-NARI-4-035	JN314923	None		T12S, I13V, K14KR, I15V, G16E, L19I, M36I, R41K, K45R, L63S, I64M, H69K, L89M, I93L	C
	IN-NARI-4-074	IN-NARI-4-074	JN314955	None		T12S, I13V, K14R, I15V, L19I, K20I, M36I, R41K, L63S, I64M, H69K, L89M	C
Iweriebor (2012)	07M17ZA	07M17ZA	GU201812	None		T12S, K14R, I15V, L19I, M36L, N37S, R41K, L63S, G68E, H69K, L89M, I93L	C
	07M20ZA	07M20ZA	GU201815	None		L10I, L19V, M36I, R41K, L63S, H69K, I93L	C
	07V9ZA	07V9ZA	GU201823	None		L10V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93L	C
Karlsson (2012)	SE_19	SE_19	JQ698679	None		T12S, I15V, G16GE, L19LI, M36I, R41K, L63S, H69K, L89M, I93L	C
Musyoki (2012)	DGM.39	DGM.39	JN176299	None	L23I	T12S, I15V, L19T, M36I, R41K, L63S, H69K, I93L	C
Nazziwa (2012)	6320901	6320901	JX499012	None		T12A, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93L	C
Nwobegahay (2012)	BBCR23ZA	BBCR23ZA	GU177476	None		T12S, I15V, L19I, M36I, N37D, R41K, L63S, I64L, H69K, I93L	C
	BBCR29ZA	BBCR29ZA	GU177480	None		T12S, I15V, L19I, K20R, E35N, N37E, R41K, D60E, L63S, H69K, V77I, V82I, L89M, I93L	C
	BBCR41ZA	BBCR41ZA	GU177486	None		T12S, L19I, K20R, M36I, R41K, D60E, Q61E, I62V, L63S, H69K, I93L	C
	MC01ZA	MC01ZA	GU177501	None		T12S, I15V, L19I, M36I, N37T, R41K, L63S, H69K, L89M, I93L	C
	MC07ZA	MC07ZA	GU177505	None		T12S, I15K, L19T, K20R, M36I, R41K, I62V, L63S, H69K, L89M, I93L	C
	MC29ZA	MC29ZA	GU177514	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93L	C
Sigaloff (2012)	KELKN220	KELKN220	JN628493	None		T12S, I15V, L19I, M36I, R41K, I62V, L63S, H69K, A71T, I93L	C
	KELKN228	KELKN228	JN628500	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93L	C
Telan (2012)	11063743	11063743	AB747463	None		L10I, I15V, L19I, M36I, R41K, L63S, C67S, H69K, L89M, I93L, C95S	C
Chen (2013)	11YNHH008	11YNHH008	JX412328	None		I15V, L19I, M36L, N37D, D60E, L63S, I64L, H69K, L89M, I93L	C
	11YNHH081	11YNHH081	JX412348	None		T12S, I15V, L19I, M36I, N37D, R41K, K45R, D60E, L63S, H69K, I93L	C
Frentz (2013)	EHR-14604	EHR-14604	JX299780	None		T12S, I15IV, L19I, M36I, R41K, Q61H, L63S, H69K, T74S, R87RT, L89M, I93L	C
	EHR-20575	EHR-20575	JX299877	None		T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93L	C
	EHR-34213	EHR-34213	JX300118	None		T12S, I13V, I15V, G16E, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93L	C
	EHR-77225	EHR-77225	JX300865	None		T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93L	C
Hawke (2013)	21376678	21376678	KC238062	None		I15V, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93L	C
Tramuto (2013)	CV1270_23	CV1270_23	HQ667677	None		M36I, R41K, L63S, H69K, L89M, I93L	C
	CV1273_28	CV1273_28	HQ667678	None		K20KR, M36I, R41K, L63S, H69K, L89M, I93L	C

Protease Inhibitors

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