<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Protease Inhibitors

Subtype C
Gene PR
Mutation L63S
Rx PI-naive
IncludeMixtures No
References 124
Patients 436
Isolates 449
 
Show mutation frequency as:
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Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# PIs WksPIMajorDRMs PIMinorDRMs OtherMutSubtype
Lole (1999)IND21301ind21301AF067156None   T12S, K14R, I15V, L19T, M36I, R41K, L63S, H69K, L89M, I93LC
Vergne (2000)LVMP1308LVMP1308AJ287041None   T12S, I15V, L19I, M36I, N37H, R41K, L63S, H69K, I93LC
Eshleman (2001)SE681SE681AF388154None   T12S, K14R, I15V, M36I, R41K, L63S, I64IM, H69K, L89M, I93LC
Hoelscher (2001)97TZ0897TZ08AF361878None   T12S, I13V, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93LC
Koch (2001)NK-3NK-3AY007732None   I15V, M36I, R41K, L63S, H69K, L89LM, I93LC
 NK-7NK-7AY007736None   T12S, G16E, L19I, M36I, R41K, D60E, I62V, L63S, I64M, H69K, K70R, L89M, I93LC
Dowling (2002)MSA4077MSA4077AF457085None   T12S, L19S, N37K, R41N, L63S, H69K, V77I, V82I, L89M, I93LC
 KISII5011KISII5011AF457061None   T12S, I15V, L19V, K20R, M36I, N37K, R41N, L63S, H69K, K70R, L89M, I93LC
Gibb (2002)DMG44_w0 None   K20R, M36I, N37D, R41K, L63S, H69K, L89M, I93LC
 DMG6262_w48 None  L76LFI13IV, M36I, R41K, L63S, I64IL, H69K, L89M, I93LC
Handema (2002)H00ZM4789H00ZM4789AB081169None   T12S, I15V, G17D, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
Hierholzer (2002)SU009SU009AY102489None   T12S, I15V, M36I, R41K, K45R, L63S, I64L, H69K, L89M, I93LC
Novitsky (2002)00BW177300BW1773AF443095None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, T74A, L89M, I93LC
 00BW168600BW1686AF443093None   I15V, L19V, M36I, N37S, R41K, L63S, H69K, K70R, L89M, I93LC
Brindeiro (2003)BRP2170BRP2170AY213490None   I15V, E35D, M36I, R41K, R57K, Q61H, I62V, L63S, L89MC
Gordon (2003)ZA045p01ZA045p01AY136998None   T12S, K14R, I15V, L19V, M36I, R41K, L63S, H69K, P79PS, L89M, I93LC
Vergne (2003)VL99SN142HPD99SN142AJ583715None   T12S, I15V, L19T, K20R, M36I, R41K, Q61E, L63S, H69K, L89M, I93LC
Yang (2003)HH004.HH004.AB090998None   T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93LC
 HH029HH029AB090999None   T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, I93LC
Arroyo (2004)01TZA35501TZA355AY253315None   I13V, E35D, M36I, R41K, K45R, R57K, L63S, H69K, L89MC
 01TZA30601TZA306AY253318None   I13V, K14R, I15V, G16E, E35D, M36I, R41K, K43R, K45R, R57K, L63S, H69K, L89MC
Deshpande (2004)in87in87AY515799None   T12TS, L19I, E35D, N37S, R41K, L63S, H69K, I72IT, L89M, I93LC
 in52in52AY515767None   T12S, I15V, L19T, M36I, R41K, L63S, H69K, L89M, I93LC
 in117in117AY515827None   T12S, L19I, N37S, R41RK, L63S, I64IM, H69K, V77VI, L89M, I93LC
 in47in47AY515764None   T12S, L19I, M36I, R41K, D60E, I62V, L63S, H69K, L89MC
 in138in138AY515845None   T12S, K14R, G16E, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 in108in108AY515818None   T12S, L19I, M36I, R41K, K45R, L63S, H69K, L89M, I93LC
 in102in102AY515812None   T12S, K14R, I15V, L19T, E34G, M36I, R41K, L63S, H69K, L89M, I93LC
Eshleman (2004)SE681SE681_7dAY428711None   Q7H, R8L, T12S, K14R, I15L, G16V, Q18L, D29A, M36I, R41K, L63S, H69K, L89M, I93LC
Eshleman (2004)23939602393960AY444211None   K14KR, I15V, L19V, E35D, M36I, R41K, L63S, H69K, I93LC
Gulick (2004)RG24RG24w0 None   T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, I93LC
Holguin (2004)IN0132IN0132AY551447None   T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 IN0090IN0090AY551458None   T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93LC
Arroyo (2005)CO178CO178AY734556None   T12S, K14R, I15V, L19V, M36I, R41K, L63S, H69K, I93LC
Balakrishnan (2005)YRG9YRG9AY787495None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 YRG17YRG17AY787503None   T12S, K14R, I15V, L19LI, M36I, R41K, L63S, H69K, V82VI, L89M, I93LC
Bellocchi (2005)879MT000879GU199533None   T12A, I15V, L19IV, K20R, N37S, R41K, L63S, H69K, K70Q, V77I, L89M, I93LC
 1229MT001229GU199564None   T12S, I15IV, G16GE, L19I, E35D, M36I, R41K, K45KR, D60DE, I62IV, L63S, I64IL, H69K, L89LM, I93LC
 068MC068GU199571None   T12S, I15V, L19I, M36I, R41K, K45KR, L63S, H69K, I93LC
Bussmann (2005)01BW3772S01BW3772SAY829298None   L19T, K20R, L63S, H69K, V77I, L89M, I93LC
 01BW4012S01BW4012SAY829301None   T12S, I15V, G16E, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 01BW3389N01BW3389NAY829320None   T12N, I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 01BW4271N01BW4271NAY829331None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 01BW3605N01BW3605NAY829322None   T12S, I15V, L19I, N37S, R41K, L63S, H69K, V77I, L89M, I93LC
Eshleman (2005)2123921239_6MAY746390None   T12S, I15V, G16E, L19I, M36I, R41K, L63S, H69K, I93LC
Eshleman (2005)ESH5105ESH5105AY756857None   I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 ESH9036ESH9036AY756880None   T12S, I15IV, L19T, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 ESH11008ESH11008AY756882None   T12S, I15V, L19I, K20KR, M36MI, N37S, L63S, H69K, V77I, L89LM, I93LC
 ESH11048ESH11048AY756884None  V82ET12S, I15V, L19I, R41K, D60E, L63S, H69K, I93LC
Grossman (2005)1791317913PR112 None   K14KE, I15V, M36I, R41K, L63S, H69K, L89M, I93LC
 2411024110PR335 None   I13V, I15V, M36I, R41K, L63S, I64V, H69K, L89M, I93LC
 2873328733PR486 None   M36I, R41K, L63S, I64M, H69K, L89M, I93LC
Non-B Workgroup (2005)UK663UK663AY900780None   T12S, I15V, L19I, M36I, R41K, R57K, L63S, I64L, H69K, K70R, L89M, I93LC
 UK1494UK1494AY900806None   T12S, I15V, L19I, E35D, M36I, R41K, L63S, H69K, V77I, L89M, I93LC
 UK2047UK2047AY900837None   I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
Saad (2005)SM_01YE39401YE394AY790001None   M36I, R41K, L63S, H69K, L89M, I93LC
Weber (2005)F88026F88026AY677467None   T12S, I15V, L19I, M36I, N37D, K43R, L63S, H69K, I93LC
 30088793008879AY677491None   I15V, L19I, M36I, N37Q, R41K, L63S, H69K, L89M, I93LC
 F93511F93511AY714419None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93LC
Bessong (2006)POB_01PB16ZA01PB16ZADQ222248None   T12S, I15V, G16E, L19I, M36T, N37T, P39S, R41K, D60E, Q61E, L63S, H69K, T74A, L89M, I93LC
 POB_02TS17ZA02TS17ZADQ222267None   I15V, L19T, K20R, E35D, M36I, N37D, L63S, H69K, K70R, P79A, L89M, I93LC
 POB_02TS26ZA02TS26ZADQ222272None   T12S, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
Lindstrom (2006)SIIDC0208SIIDC0208 None   L19I, M36V, R41K, L63S, I64L, H69K, K70KR, L89M, I93LC
Parreira (2006)PG22PG22AM071421None   T12S, I15V, L19I, K20R, M36L, R41K, L63S, H69K, K70Q, L89M, I93LC
Rodrigues (2006)BR04RS155BR04RS155DQ070559None   I15V, L19V, M36I, N37K, R41N, L63S, H69KC
Rousseau (2006)Pt102PS001MB1DQ275648None   I15V, L19I, M36V, N37S, P39Q, L63S, H69K, V82I, I93LC
 Pt9003SK033B2AY772692None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93LC
 Pt10203SK062B1DQ164113None   T12S, I15V, L19V, N37K, R41I, L63S, H69K, V77I, L89M, I93LC
 Pt11703SK097B1AY878060None   L19T, M36I, R41K, D60E, L63S, H69K, I93LC
 Pt19504SK164B1DQ056405None   L10V, T12S, I15V, G16E, L19I, M36I, N37S, R41K, L63S, H69K, I93LC
 Pt20504SK175B1DQ164129None   I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
Santos (2006)C166C166DQ191007None   L19Q, M36I, N37K, R41N, L63S, H69K, L89M, I93LC
 PA209PA209DQ343984None   N37K, R41N, L63S, I64M, H69K, L89M, I93LC
 PA211PA211DQ343986None   T12K, I15V, M36I, N37K, R41N, L63S, H69K, L89M, I93LC
Vidal (2006)NV_LBFE06902.LBFE069AM041006None   T12A, I15V, K20R, E35D, M36I, N37D, K45R, R57K, L63S, H69K, L89M, I93LC
 NV_LBS04802.LBS048AM041002None   I13V, K14I, I15V, L19Q, K20R, M36I, R41K, D60E, Q61H, L63S, H69K, L89M, I93LC
Brumme (2007)1536PRRT_1536EF368846None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, D60E, Q61E, L63S, H69K, L89M, I93LC
Church (2007)51055105EF602607None   I15V, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 70187018EF602610None   T12S, I15V, L19V, M36I, R41K, L63S, I64M, H69K, L89M, I93LC
 90369036EF602622None   T12S, I15V, L19T, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 1100411004EF602623None   I15V, L19I, M36I, P39PT, R41K, L63S, H69K, L89M, I93LC
 1100811008EF602624None   T12S, I15V, L19I, K20KR, N37S, L63S, H69K, V77I, L89LM, I93LC
Kassu (2007)ETH-G-124G-124AB285804None   L10V, T12TA, I15V, L19Q, K20R, M36I, R41K, K43R, L63S, H69K, I93LC
Novitsky (2007)14671467_0493EF026205None   I15V, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93LC
  1467_1383EF026206None   K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
  1467_1415EF026207None   K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
  1467_1693EF026208None   K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 16041604_0753EF026215None   I15V, L19I, M36L, D60E, L63S, H69K, L89M, I93LC
Sen (2007)T091NPT91-PLEF186957None   T4S, Q7E, T12S, I15V, L19I, M36I, R41K, Q61H, L63S, E65D, H69K, I72T, L89MC
Soundararajan (2007)TRC8TRC8EF491930None   T12S, I13V, I15V, L19I, K20R, M36I, G40G*, R41K, L63S, H69K, I72T, I93LC
 TRC14TRC14EF491935None  L33FT12S, K14R, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 TRC46TRC46EF491947None   T12S, K14R, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93LC
 TRC10TRC10EF491931None   I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
Vicenti (2007)492168542REF376501None   T12S, I15V, L19IT, M36L, R41K, L63S, H69K, I93LC
Vidal (2007)U181702BU.U1817AM260226None   T12S, I15V, L19I, M36I, N37K, R41N, L63S, H69K, I93LC
 U233502BU.U2335AM260244None   T12S, I15V, L19I, M36I, N37K, R41N, L63S, H69K, K70R, V82I, L89M, I93LC
von Wyl (2007)1015053478EF449917None   L10V, L19I, A22V, L23F, M36I, L63S, H69K, L89M, I93LC
Zhong (2007)D001505CN_015EF199562None   T12S, I15V, G16A, L19I, M36V, R41K, D60E, L63S, H69K, K70R, L89M, I93LC
 D006805CN_068EF199597None   T12S, I15V, L19T, M36V, R41K, D60E, L63S, H69K, L89M, I93LC
 D006905CN_069EF199598None   T12S, I15V, L19M, M36V, R41K, D60E, L63S, H69K, L89M, I93LC
Arora (2008)57PI-57 None   I15V, G16X, L19T, M36L, R41K, D60E, L63S, I64L, H69K, L89M, I93LC
Deho (2008)159159EU244649None   T12S, I15V, L19I, M36I, R41K, D60E, Q61D, L63S, H69K, L89M, I93LC
 22EU244660None   T12S, I15V, L19V, M36I, D60E, Q61E, L63S, H69K, L89M, I93LC
Jacobs (2008)18261826EF602299None   T12S, I15V, L19V, M36I, L63S, H69K, L89M, I93LC
Kamoto (2008)MW4MW4JQ617132None   I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 MW25MW25JQ617144None   I15V, L19I, N37T, R41K, L63S, H69K, A71T, I93LC
 MW37MW37JQ617153None   I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 MW40MW40JQ617156None   I15V, L19I, K20R, E35D, M36I, R41K, D60E, Q61E, L63S, H69K, I93LC
 MW41MW41JQ617157None   I15V, L19I, M36I, R41K, L63S, H69K, T74A, L89M, I93LC
 MW45MW45JQ617161None   K14R, I15V, L19T, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93LC
 MW47MW47JQ617163None   K14N, I15V, L19T, K20R, M36I, Q61E, L63S, H69K, L89M, I93LC
Lahuerta (2008)P64838P64838_99EF407746None   T12A, I15V, L19I, N37S, R41K, L63S, H69K, K70Q, V77I, L89M, I93LC
Lall (2008)G39G39-AFMC22EU158885None   T12PS, K14R, I15V, L19IT, M36I, R41K, L63S, H69K, V82VI, I93LC
 G40G40-AFMC23EU158886None   T12PS, K14R, I15V, L19IT, M36I, R41K, L63S, H69K, V82VI, I93LC
Marconi (2008)SW014sw014EU308031None   T12P, I15V, L19T, K20KR, E35D, M36I, N37E, R41RK, D60E, Q61E, L63S, H69K, L89M, I93LC
Matthews (2008)A373A373FJ199572None   T12S, I15V, L19V, M36T, R41K, L63S, H69K, L89M, I93LC
 J120MJ120MFJ199576None   L10I, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93LC
 PS001PS001FJ199584None   I15V, L19I, M36V, N37S, P39Q, L63S, H69K, V82I, I93LC
 PS085PS085FJ199660None   I15V, L19T, N37S, R41K, Q61D, L63S, H69K, V77I, L89M, I93LC
 PS201PS201FJ199757None   T12S, K14R, I15V, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
 PS399PS399FJ199806None   T12S, I15V, L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93LC
 PS425PS425FJ199824None   I15V, L19I, M36I, R41K, L63S, H69K, I93LC
 SK033SK033FJ199860None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93LC
 SK062SK062FJ199874None   T12S, I15V, L19V, N37K, R41I, L63S, H69K, V77I, L89M, I93LC
 SK097SK097FJ199891None   L19T, M36I, R41K, D60E, L63S, H69K, I93LC
 SK175SK175FJ199946None   I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
Nyombi (2008)TMS020TMS020EU251798None   T12S, I13V, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 TMS029TMS029EU251803None   T12S, I15V, G16E, L19I, E35G, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
Pillay (2008)DR8003ZA.DR80AY589924None   T12TS, I15V, L19IM, K20R, M36L, N37S, R41K, Q61N, L63S, H69K, V77I, L89M, I93LC
Ayouba (2009)29112911HALDPRGQ351995None   T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 30763076HALDPRGQ351981None   G16E, L19I, M36I, N37S, R41K, L63S, H69K, I93LC
Brumme (2009)V2537V2537GQ372203None   T12S, I15V, G17D, L19I, M36I, N37K, R41K, Q61D, L63S, H69K, I93LC
Cuevas (2009)X2547_1X2547_1GU326128None   T12S, I15V, L19I, E35D, M36I, N37D, R41K, Q61A, L63S, H69K, L89M, I93LC
Hosseinipour (2009)87328732GQ228218None   T12S, K14KR, I15V, L19I, M36I, N37D, R41K, L63S, H69K, I93LC
 94059405GQ228242None   T12S, I13V, I15V, L19I, K20R, M36I, Q61E, L63S, H69K, L89M, I93LC
 94589458GQ228250None   T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, I72V, L89MC
 94569456GQ228277None   W6W*L, T12S, I15V, L19T, E35D, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 85148514GQ228287None   T12S, I15V, L19I, M36L, R41K, D60E, I62V, L63S, I64M, H69K, L89M, I93ILC
Iqbal (2009)100025100025EU449521None   T12S, K14KR, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 100032100032EU449528None   T12S, K14R, I15V, L19I, M36V, R41K, L63S, H69K, I72IV, L89M, I93LC
 100068100068EU449539None   T12S, K14R, I15V, L19I, E21EK, M36I, R41K, L63S, H69K, I93LC
 100127100127EU449542None   T12S, K14R, I15V, G16E, L19I, M36T, R41K, L63S, H69K, L89M, I93LC
Kandathil (2009)VL07_272VL07_272EU683752None   T12S, I15V, L19I, M36I, R41K, L63S, I64M, H69K, L89M, I93LC
 CD07_331CD07_331EU683758None   I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 CD07_373CD07_373EU683759None   T12S, I15V, L19I, M36I, R41K, D60E, I62V, L63S, I64L, H69K, L89M, I93LC
 CD06_595CD06_595EU683781None   K14R, I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 VL06_130VL06_130EU744912None   T12S, I15V, G16E, L19I, M36V, R41K, L63S, H69K, I93LC
 CD06_411CD06_411EU683769None   T12X, I15V, L19I, E35D, M36I, R41K, L63S, H69K, I93LC
 CD06_468CD06_468EU683773None   I15V, G16E, L19X, M36I, K45R, Q61E, L63S, H69K, I93LC
 VL05_063VL05_063EU683774None   T12S, K14R, I15V, L19I, M36I, R41K, K45R, D60E, I62V, L63S, H69K, L89MC
Kassaye (2009)TC-41TC41_2004FJ445734None   I15V, G17D, L19I, E35D, M36I, R41K, K45R, R57K, L63S, H69K, L89M, I93LC
 TC-47TC47_2003FJ445703None   I15V, L19IT, M36I, R41K, I62V, L63S, H69K, A71T, I72E, L89M, I93LC
  TC47_2004FJ445723None   I15V, L19T, M36I, R41K, I62V, L63S, H69K, A71T, I72E, I93LC
 TC-63TC63_2003FJ445732None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
Rajesh (2009)N37TRCNPR37FJ595400None   T12S, I15V, L19I, M36I, R41K, D60DE, I62IV, L63S, I64L, H69K, L89M, I93LC
 N47TRCNPR47FJ595410None   T12S, I15V, L19I, M36L, N37S, L63S, H69K, V82I, L89M, I93LC
 N12TRCNPR12FJ595375None   T12S, K14KR, L19IT, K20KR, M36MI, R41K, L63S, H69K, L89LM, I93LC
 N98TRCNPR98FJ595461None   L10LV, T12S, I15V, G16E, L19I, M36I, N37D, Q61E, L63S, H69K, I72IT, I93LC
 F2TRCFPR2FJ595464None   T12S, I15V, L19I, M36I, L63S, H69K, I93LC
 F8TRCFPR8FJ595470None   T12A, I15V, G16E, L19I, M36I, R41K, L63S, H69K, I93LC
Tu (2009)2PBMC2EU518252None   T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89I, I93LC
 46PBMC46EU518287None   T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93LC
 50PBMC50EU518291None   T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93LC
  plasma50EU518340None   T12S, I15V, L19I, M36V, R41K, D60E, L63S, H69K, L89M, I93LC
 57PBMC57EU518297None   T12S, I15V, L19I, M36I, N37D, R41K, D60E, L63S, I64IM, H69K, L89M, I93LC
  plasma57EU518346None   T12S, I15V, L19I, M36IV, N37D, R41K, D60E, L63S, I64IM, H69K, L89M, I93LC
Vercauteren (2009)pt19551540027297GQ399069None   T12S, L19V, E34EG, E35ED, M36I, R41K, L63S, H69K, I93LC
 pt18242367265021GQ399200None   I15V, G16E, L19I, N37K, R41N, D60E, L63S, H69K, I72IM, V77I, L89M, I93LC
 pt16303584369141GQ399394None   I15V, M36I, R41K, L63S, I64IV, H69K, L89M, I93LC
 pt13585077812830GQ399666None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 pt8637ouKxGxYB3GQ400161None   T12TA, K14KR, I15V, G16E, M36I, R41K, L63S, H69K, I72T, I93LC
 pt5939431363102GQ400431None   T12S, G17D, L19I, M36I, R41K, L63S, H69Q, L89M, I93LC
 pt5619586931726GQ400463None   T12S, G17D, L19I, M36I, R41K, I62IV, L63S, H69Q, L89M, I93LC
 pt75VYX2c41ZvwGQ400949None   I15V, L19T, M36I, N37AT, L63S, H69K, L89M, I93LC
Wallis (2009)GP08729512GP08729512 None   T12S, I15V, L19I, K20R, M36I, N37D, R41K, I62V, L63S, H69K, V75I, L89M, I93LC
 GT00565939GT00565939 None   T12S, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 TJC2367412TJC2367412 None   K14R, I15V, L19I, M36I, R41K, D60E, Q61E, L63S, H69K, L89M, I93LC
 TJC2366809TJC2366809 None   I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 TJC2377938TJC2377938 None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 TJC2382138TJC2382138 None   L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 23056942305694 None   I15V, L19T, M36I, R41K, L63S, H69K, I93LC
 GT00050233GT00050233 None   T12S, I15V, L19I, M36I, R41K, K43KR, L63S, H69K, I93LC
 TJC2393616TJC2393616 None   T12S, I15V, L19T, D29DN, E35K, M36I, R41K, L63S, H69K, L89M, I93LC
 TJC2409904TJC2409904 None   T12S, L19I, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 TJC2378119TJC2378119 None   L10M, I13V, L19V, M36I, R41K, L63S, H69K, I72E, L89M, I93LC
 TJC2389178TJC2389178 None   I15V, L19I, M36I, R41K, L63S, H69K, I93LC
Yu (2009)01407CNGD014FJ387041None   T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 01507CNGD015FJ387042None   T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
Chaturbhuj (2010)1-0051-005FJ878937None   T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 1-0171-017FJ878946None   T12S, I15V, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
Diop-Ndiaye (2010)142HPD142HPDFN599687None   T12S, I15V, L19T, K20R, M36I, R41K, Q61E, L63S, H69K, L89M, I93LC
Djoko (2010)613CD0866FR666613None   L19I, N37S, R41K, L63S, H69K, V77I, L89M, I93LC
Gonzalez (2010)914_M00m914_M00mGQ427114None   L10V, I15V, Q18H, L19I, M36I, N37S, R41K, L63S, H69K, A71T, P79S, I93LC
 2919_M30m2919_M30mGQ427129None   I15V, L19I, M36I, R41K, Q61G, L63S, H69K, T74S, L89M, I93LC
 CP6CP6GQ433809None   T12S, I15V, G16E, L19I, D60E, L63S, H69K, V77I, L89M, I93LC
 KT5KT5GQ433833None   T12S, K14R, G17D, L19I, K20R, M36I, N37K, R41K, L63S, H69K, L89M, I93LC
Papathanasopoulos (2010)1750307ZA17503GU253413None   T12A, K14R, I15V, G16E, L19I, E35D, M36I, N37D, R41K, K45R, D60E, Q61E, L63S, H69K, L89I, I93LC
Wright (2010)164SK164HM593171None   L10LV, T12S, I15V, G16E, L19I, M36I, N37S, R41K, L63S, H69K, I93LC
 175SK175HM593183None   I15V, L19LI, M36I, R41K, L63S, H69K, I93LC
 18SK18HM593187None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, Q61H, L63S, H69K, K70Q, L89M, I93LC
 259SK259HM593263None   T12S, I15V, L19I, E35D, M36I, R41K, R57RK, L63S, H69K, I72IV, T74TS, L89M, I93LC
 327SK327HM593331None   T12TS, I15IV, L19I, M36L, N37S, R41K, L63S, I64M, H69K, L89M, I93LC
 33SK33HM593334None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I72IM, V82VI, L89LM, I93LC
 380SK380HM593386None   T12S, I15V, L19I, N37S, L63S, H69K, L89M, I93LC
 384SK384HM593390None   T12S, K14KR, I15IV, G16E, L19IT, K20KR, E35D, M36I, R41K, L63S, H69K, L89IM, I93LC
 437SK437HM593446None   T12S, I15V, L19I, M36I, R41K, L63S, I64M, H69K, K70KR, L89M, I93LC
 438SK438HM593447None   T12S, I15V, L19IV, E35D, M36I, N37NS, R41K, L63S, H69K, L89M, I93LC
 97SK97HM593508None   K14KR, I15IV, L19IT, M36I, R41K, L63S, H69K, I93LC
Yang (2010)20106934372010693437JQ616902None   T12S, G16E, L19I, K20R, M36I, N37Q, L63S, H69K, V77I, L89M, I93LC
Zhang (2010)0616CNsd0616GQ443571None   K14R, L19V, M36I, R41K, L63S, H69K, K70R, L89M, I93LC
Bussmann (2011)B0736B0736JQ617018None   I15V, Q18L, L19V, E35D, M36I, R41K, L63S, H69K, I72IV, L89M, I93LC
 B0592B0592JQ617084None   I15V, L19I, M36I, L63S, H69K, I93LC
de Medeiros (2011)Pat002RS017JF487831None   K14R, I15V, M36I, N37K, R41N, L63S, H69K, L89M, I93LC
 Pat015RS120JF487844None   I15V, M36I, N37K, R41N, L63S, H69K, V82I, L89M, I93LC
Deshpande (2011)Pat041in1125JF414429None  Q58ET12S, I15V, G16GE, Q18QH, L19I, K20R, E35D, M36I, R57RK, D60DE, Q61QH, L63S, H69K, L89M, I93LC
 Pat017in1091JF414452None   T12S, I15V, L19I, M36I, R41K, L63S, I64L, H69K, I93LC
Graf (2011)SC69SC69JF774022None   I15V, M36I, N37K, R41N, L63S, H69K, I93LC
Hamers (2011)300033CP076300033HM119627None   T12S, I15V, L19T, E35D, M36I, R41K, L63S, H69K, I93ILC
 300065CP076300065HM119653None   T12S, L19I, M36I, R41K, I62IV, L63S, H69K, I93LC
 300130CP076300130HM119706None   K14R, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
 300194CP076300194HM119765None   L19V, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 300204CP076300204HM119774None   I15V, L19I, E35D, M36I, N37ND, R57RK, L63S, H69K, L89M, I93ILC
 300234CP076300234HM119798None   K14R, I15V, G16E, L19I, M36I, R41K, L63S, H69K, L89KR, I93LC
 300413CP076300413HM119837None   T12S, K14R, I15V, L19I, K20R, E35D, M36I, R41K, Q61H, L63S, H69K, K70Q, L89M, I93LC
 300421CP076300421HM119845None   T12S, K14R, I15V, L19I, K20R, E35D, M36I, R41K, Q61H, L63S, H69K, K70Q, L89M, I93LC
 300422CP076300422HM119846None   T12S, L19T, K20R, M36I, N37NS, R41K, L63S, H69K, L89M, I93LC
 300432CP076300432HM119856None   T12S, I13V, I15V, L19I, M36I, R41K, Q61H, L63S, H69K, L89M, I93LC
 300438CP076300438HM119860None   T12S, L19T, M36I, N37E, P39S, I62IV, L63S, H69KQ, A71V, I72T, I93LC
 300449CP076300449HM119870None   T12S, G16E, L19I, M36I, R41K, Q61E, I62IV, L63S, I64M, H69K, L89M, I93LC
 300452CP076300452HM119873None   T12A, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 300455CP076300455HM119876None   I15V, L19T, E35D, M36I, R41K, K45R, R57RK, D60E, Q61E, L63S, H69K, L89I, I93LC
 300470CP076300470HM119890None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 300495CP076300495HM119914None   T12S, L19V, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 300504CP076300504HM119921None   T12S, I15V, L19I, M36I, N37D, R57K, L63S, H69K, A71T, I93LC
 300548CP076300548HM119959None   L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 300598CP076300598HM119999None   I15V, L19I, M36I, L63S, H69K, L89M, I93LC
 300626CP076300626HM120025None   I15V, L19T, M36I, R41K, L63S, H69K, I93LC
 300667CP076300667HM120058None   L19I, M36I, N37S, R41K, L63S, I64IM, H69K, L89LM, I93LC
 300674CP076300674HM120064None   L19V, E35D, M36I, R41K, D60DE, Q61QE, L63S, H69K, L89M, I93LC
 300685CP076300685HM120073None   T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 302361CP076302361HM120087None   L19M, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 302417CP076302417HM120114None   I15V, L19LI, M36I, R41K, L63S, H69K, I93LC
 302426CP076302426HM120120None   I13V, I15V, L19I, M36I, N37S, R41K, L63S, H69K, I72V, T74S, L89M, I93LC
 CP076301696CP076301696HQ993692None   I15V, L19T, E35ED, M36I, R41K, L63S, H69K, L89M, I93LC
 CP076305077CP076305077HQ994311None   L19I, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93LC
 CP076305085CP076305085HQ994316None   T12TS, I15V, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
 CP076305113CP076305113HQ994336None   T12S, L19IT, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93LC
 CP076301437CP076301437HQ994412None   I13V, K14N, L19I, K20R, M36I, N37NS, R41K, L63S, H69K, K70KR, L89M, I93LC
 CP076301448CP076301448HQ994418None   T12P, I15V, L19I, N37S, R41K, L63S, H69K, V77I, L89M, I93LC
 CP076301480CP076301480HQ994443None   L10X, V11VF, I15V, G17D, L19AV, K20R, E35D, M36I, R41K, K45R, L63S, H69K, T74TA, L89M, I93LC
 CP076301520CP076301520HQ994466None   I15V, L19V, M36L, N37S, R41RK, K45R, L63S, H69K, L89M, I93LC
 CP076302166CP076302166HQ994518None   T12S, K14R, I15V, L19IT, K20M, N37S, R57K, I62V, L63S, H69K, L89M, I93LC
 CP076301013CP076301013HQ994567None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, K45R, L63S, H69K, V82I, L89M, I93LC
 CP076301072CP076301072HQ994594None   T12S, I15V, L19I, K20R, M36I, N37S, R41K, L63S, H69K, V77I, L89M, I93LC
 CP076301075CP076301075HQ994596None   T12S, I15V, L19IT, M36I, L63S, H69K, L89M, I93LC
 CP763A03425CP763A03425HQ994673None   I13V, I15V, G16E, L19I, M36I, R41K, K45R, Y59F, D60E, Q61N, L63S, H69K, L89M, I93LC
 CP763A03678CP763A03678HQ994694None   L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89LM, I93LC
 CP076300946CP076300946HQ994721None   I15V, L19I, K20R, M36I, R41K, L63S, H69K, K70Q, I72IV, V77I, V82VI, L89LM, I93LC
 CP076300983CP076300983HQ994744None   I15V, L19T, K20R, M36I, L63S, H69K, K70Q, I72IV, V77I, L89M, I93LC
 CP076301043CP076301043HQ994774None   T12S, I15V, L19I, K20R, M36I, N37NDGS, L63S, H69K, K70Q, V77I, V82I, L89I, I93LC
 CP763A01781CP763A01781HQ994877None   L10I, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 CP763A03354CP763A03354HQ994893None   I15V, L19V, M36I, R41K, L63S, H69K, L89LFIM, I93LC
 CP076302434CP076302434HQ995493None   T12S, I15V, L19I, E35D, M36I, R41K, K45R, R57RK, L63S, H69K, L89M, I93LC
Kasang (2011)1719217192HM572398None   T12S, I15V, Q18H, L19I, M36L, N37R, R41N, Q61N, L63S, I64IL, H69K, V82I, L89M, I93LC
 27262726HM572402None   T12S, I15V, L19IV, L23LF, M36I, N37K, R41N, L63S, H69K, L89LM, I93LC
Manasa (2011)10028711002871JN664997None   L10I, T12S, L19V, M36I, R41K, Q61H, L63S, H69K, L89M, I93LC
 10036341003634JN665001None   T12S, I15V, L19V, M36I, R57K, Q61N, L63S, C67F, H69K, L89M, I93LC
 10051001005100JN665015None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, K45R, D60E, Q61E, L63S, H69K, L89M, I93LC
 10091391009139JN665032None   L19T, M36I, R41K, L63S, H69K, I93LC
 10093281009328JN665035None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
Nwobegahay (2011)BBVCT04ZABBVCT04ZAGU139579None   T12S, I15V, L19I, K20R, M36I, R41K, R57K, L63S, H69K, I93LC
 BBVCT09ZABBVCT09ZAGU139582None   T12S, I15V, L19I, K20R, M36I, R41K, R57K, L63S, H69K, I93LC
 BBVCT15ZABBVCT15ZAGU139588None   T12S, I15V, L19I, K20R, M36I, R41K, R57K, D60G, L63S, H69K, I93LC
 BBVCT73ZABBVCT73ZAGU139616None   T12S, K14R, I15V, L19I, E35D, M36I, R41K, D60E, Q61E, L63S, H69K, L89M, I93LC
 BBVCT77ZABBVCT77ZAGU139619None   I15V, L19T, K20R, E35D, M36I, R57K, L63S, H69K, L89M, I93LC
 BBVCT05ZABBVCT05ZAGU139621None   L10I, T12S, I15V, L19I, M36I, R41K, L63S, H69K, K70R, I72T, I93LC
Nwobegahay (2011)08MB37ZA08MB37ZAGU188822None   T12S, I15V, G16E, L19I, M36I, L63S, H69K, L89M, I93LC
 08MB52ZA08MB52ZAGU188834None   T12S, K14R, I15V, L19I, M36L, R41K, L63S, H69K, L89M, I93LC
Parboosing (2011)Pat052HRS8HQ844574None   L10V, T12S, L19I, K20R, M36I, R41K, R57K, L63S, H69K, T74S, L89M, I93LC
 Pat044HRS44HQ844582None   T12S, I15V, L19V, E35D, M36I, R41K, L63S, H69K, I93LC
 Pat040HRS52HQ844586None   L10LI, T12S, I15V, L19T, M36I, R41K, L63S, H69K, L89LM, I93LC
 Pat011HRS204HQ844615None   T12S, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93LC
 Pat005HRS45HQ916287None   T12S, I15V, L19I, M36I, R41K, L63S, H69Q, L89M, I93LC
Shahid (2011)3P-0193P-019JN023037None   T12S, K14R, I15V, L19T, M36I, R41K, L63S, H69K, I93LC
Thorat (2011)Pat007IN-NARI-HIVDR-5-007HQ166845None   T12S, I15V, L19T, M36I, R41K, L63S, H69K, L89M, I93LC
 Pat014IN-NARI-HIVDR-5-014HQ166852None   T12S, I15V, L19I, M36MI, R41K, L63S, H69K, L89M, I93LC
 Pat027IN-NARI-HIVDR-5-027HQ166865None   L19I, M36MIL, N37S, R41K, L63S, H69K, L89M, I93LC
 Pat040IN-NARI-HIVDR-5-040HQ166877None   T12S, L19I, E35D, M36I, R41K, L63S, H69K, K70R, L89M, I93LC
 Pat048IN-NARI-HIVDR-5-048HQ166884None   T12S, I15V, L19T, M36I, R41K, L63S, H69K, I93LC
van Zyl (2011)A101A101JN638066None   T12S, I15V, L19I, K20R, M36I, R41K, I62V, L63S, H69K, L89M, I93LC
 A123A123JN638079None   T12S, I15V, L19I, M36I, R41K, L63S, I64V, H69K, K70R, I93LC
 A135A135JN638082None   T12S, I13V, I15V, L19T, K20R, M36I, L63S, H69K, L89M, I93LC
 A151A151JN638089None   M36I, N37D, R41K, L63S, H69K, I93LC
 A163A163JN638094None   I13IV, K14R, I15V, L19LI, M36MI, N37NS, R41K, I62IV, L63S, H69K, L89MC
 A164A164JN638095None   I15V, L19M, M36I, R41K, L63S, H69K, L89M, I93LC
 A200A200JN638120None   I15V, L19I, N37S, R41K, L63S, I64M, H69K, V77I, I93LC
 A201A201JN638121None   T12S, K14R, I15V, G16E, L19I, N37S, R41K, L63S, H69K, V77I, I93LC
 A268A268JN638160None   L10M, L19I, E35D, R41K, R57RK, L63S, H69Q, L89M, I93LC
 A272A272JN638164None   T12S, I15V, L19I, M36I, N37D, R41K, L63S, H69K, T74S, I93LC
 A280A280JN638171None   T12S, I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 A310A310JN638189None   L19I, M36I, R41K, L63S, I64L, H69K, L89M, I93LC
 A72A72JN638221None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 A79A79JN638224None   T12S, I13V, I15V, L19T, K20R, M36I, Q61E, L63S, H69K, L89M, I93LC
Wright (2011)AS1-0323B2AS1-0323B2HQ696791None   K14M, I15V, L19T, K20R, E35EK, M36I, R41K, I62V, L63S, I64L, H69K, L89I, I93LC
 AS2-0016B2AS2-0016B2HQ696795None   T12S, I15V, L19I, E35D, M36I, R41K, K45R, L63S, I64M, H69K, L89M, I93LC
 AS2-0184B2AS2-0184B2HQ696800None   I15V, L19I, K20R, M36I, P39PS, R41K, L63S, H69K, V77I, L89M, I93LC
 OQ_052OQ_052HQ696834None   I15V, L19I, K20R, M36I, R41T, L63S, H69K, V77I, L89M, I93LC
 QA_006QA_006HQ696843None   T12S, I15V, L19V, M36I, N37S, R41K, Q61E, L63S, H69KC
 AS2-0016B8AS2-0016B8HQ696853None   T12S, I15V, L19I, E35D, M36I, R41K, K45R, L63S, I64M, H69K, L89M, I93LC
Ye (2011)BJ07229BJ07229JF906588None   T12S, I15V, L19I, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93LC
Ye (2011)CNBJ583CNBJ583HQ007342None   T12S, I15V, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
Zeng (2011)K10K10JF505515None   T12S, I15V, L19I, E35D, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 K7K7JF505524None   T12S, L19I, M36I, R41K, K45R, R57K, D60E, L63S, H69K, L89M, I93LC
 K82K82JF505610None   T12S, I15V, L19I, M36L, R41K, D60E, L63S, H69K, L89M, I93LC
Chen (2012)YN09DH0092YN09DH0092JQ658558None   T12S, K14R, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 YN09DH0101YN09DH0101JQ658565None   T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 YN10DH0028YN10DH0028JQ658653None   T12S, I13V, K14R, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 YN10DH0077YN10DH0077JQ658698None   T12S, I15V, L19I, E35EDG, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
da Silveira (2012)BRMS51BRMS51JF342301None   T12P, I15V, M36I, N37K, R41N, L63S, I64L, H69K, L89M, I93LC
De Gascun (2012)IRL06358IRL06358JN622824None  Q58ET12S, I15V, L19T, K20R, D29DV, E35D, M36I, R41K, P44PL, I62V, L63S, H69K, V82VI, L89M, I93LC
 IRL10939IRL10939JN622828None   T12S, I13IM, L19V, M36MI, R41K, K45KR, L63S, H69K, V77I, L89M, I93LC
 IRL12687IRL12687JN622903None   T12S, I15V, L19I, K20R, M36IL, N37NS, P39PS, R41K, L63S, H69K, L89MC
 IRL49477IRL49477JN622930None   T12S, I15GV, L19I, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93L, N98NKC
 IRL50716IRL50716JN622971None   T12P, I15V, L19IT, K20R, E35D, M36IV, R41K, D60E, Q61E, L63S, H69K, L89M, I93LC
 IRL57990IRL57990JN623028None   T12TS, L19V, R41K, L63S, H69K, V77I, L89M, I93LC
 IRL10512IRL10512JN623039None   I15V, L19I, M36I, N37D, R41K, L63S, H69K, I72IM, L89LM, I93LC
Hingankar (2012)IN-NARI-4-013IN-NARI-4-013JN314904None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 IN-NARI-4-028IN-NARI-4-028JN314917None   I15V, G16E, L19I, M36I, L63S, H69K, L89LM, I93LC
 IN-NARI-4-035IN-NARI-4-035JN314923None   T12S, I13V, K14KR, I15V, G16E, L19I, M36I, R41K, K45R, L63S, I64M, H69K, L89M, I93LC
 IN-NARI-4-074IN-NARI-4-074JN314955None   T12S, I13V, K14R, I15V, L19I, K20I, M36I, R41K, L63S, I64M, H69K, L89MC
Hunt (2012)KZN09_381065KZN09_381065KF736760None   T12S, L19T, M36I, R41K, L63S, H69K, I93LC
 GP06_189034GP06_189034KF736530None   T12S, I15V, L19I, K20R, M36L, R41K, L63S, C67Y, H69K, V77I, V82I, L89I, I93LC
 KZN07_246147KZN07_246147KF736609None   T12S, I15V, G16E, L19I, M36I, R41K, L63S, H69K, K70R, T74S, L89M, I93LC
 KZN08_329619KZN08_329619KF736684None   L19V, M36I, R41K, K43R, L63S, H69K, V82I, L89M, I93LC
 KZN08_326963KZN08_326963KF736677None   T12S, I15V, L19T, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 KZN09_384154KZN09_384154KF736778None   G16E, L19I, M36I, R41K, R57K, L63S, H69K, L89M, I93LC
 GP09_0254GP09_0254KF736716None   I15V, L19I, M36I, R41K, L63S, H69K, I93LC
 KZN09_381496KZN09_381496KF736762None   T12S, I15V, G16A, L19V, E35D, R41K, L63S, H69K, I93LC
 GP09_1409GP09_1409KF736734None   T12S, Q18E, L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93LC
 KZN09_382932KZN09_382932KF736773None   T12S, I15V, L19I, E35D, M36I, R41K, R57K, Q61H, L63S, H69K, K70R, L89M, I93LC
 KZN07_247863KZN07_247863KF736622None   T12S, I15V, G16E, L19I, M36I, R41K, L63S, H69K, K70R, T74S, L89M, I93LC
 GP06_192563GP06_192563KF736551None   T12S, I15V, L19I, R41K, L63S, H69K, V77I, I93LC
 GP07_217150GP07_217150KF736576None   L10LI, T12S, I13V, K14KR, I15V, L19T, K20R, M36I, R41K, Q61E, L63S, C67CY, H69K, I93LC
Iweriebor (2012)07M17ZA07M17ZAGU201812None   T12S, K14R, I15V, L19I, M36L, N37S, R41K, L63S, G68E, H69K, L89M, I93LC
 07M20ZA07M20ZAGU201815None   L10I, L19V, M36I, R41K, L63S, H69K, I93LC
 07V9ZA07V9ZAGU201823None   L10V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93LC
Karlsson (2012)SE_19SE_19JQ698679None   T12S, I15V, G16GE, L19LI, M36I, R41K, L63S, H69K, L89M, I93LC
Musyoki (2012)DGM.39DGM.39JN176299None  L23IT12S, I15V, L19T, M36I, R41K, L63S, H69K, I93LC
Nazziwa (2012)63209016320901JX499012None   T12A, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93LC
Nwobegahay (2012)BBCR23ZABBCR23ZAGU177476None   T12S, I15V, L19I, M36I, N37D, R41K, L63S, I64L, H69K, I93LC
 BBCR29ZABBCR29ZAGU177480None   T12S, I15V, L19I, K20R, E35N, N37E, R41K, D60E, L63S, H69K, V77I, V82I, L89M, I93LC
 BBCR41ZABBCR41ZAGU177486None   T12S, L19I, K20R, M36I, R41K, D60E, Q61E, I62V, L63S, H69K, I93LC
 MC01ZAMC01ZAGU177501None   T12S, I15V, L19I, M36I, N37T, R41K, L63S, H69K, L89M, I93LC
 MC07ZAMC07ZAGU177505None   T12S, I15K, L19T, K20R, M36I, R41K, I62V, L63S, H69K, L89M, I93LC
 MC29ZAMC29ZAGU177514None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93LC
Sigaloff (2012)KELKN220KELKN220JN628493None   T12S, I15V, L19I, M36I, R41K, I62V, L63S, H69K, A71T, I93LC
 KELKN228KELKN228JN628500None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
Telan (2012)1106374311063743AB747463None   L10I, I15V, L19I, M36I, R41K, L63S, C67S, H69K, L89M, I93L, C95SC
Zeng (2012)CN0988CN0988JQ028296None   T12S, I15V, L19T, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 CN1251CN1251JQ028305None   I15V, L19I, M36I, R41K, D60E, L63S, H69K, I93LC
 CN0044CN0044JQ028383None   T12S, I15V, L19I, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93LC
Bila (2013)MZ10-236HIV-1KF927329None   T12S, I15V, L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
 MZBEI13HIV-1KF927404None   K14N, L19I, M36L, N37K, R41K, Q61D, L63S, H69K, L89M, I93LC
 MZ09-001HIV-1KF927170None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 MZMAP45HIV-1KF927423None   I15V, L19I, K20R, M36I, N37S, R41K, L63S, H69K, K70Q, V77I, L89M, I93LC
 MZ10-259HIV-1KF927348None   T12S, K14R, I15V, L19I, M36I, N37S, R41K, Q61H, L63S, H69K, L89M, I93LC
 MZ10-240_XAHIV-1KF927332None   T12S, L19T, K20R, M36I, R41K, L63S, H69K, I72E, L89M, I93LC
 MZJUN27HIV-1KF927410None   T12S, L19T, E35D, R41K, L63S, H69K, L89M, I93LC
 MZ10-218HIV-1KF927316None   T12S, I15V, L19I, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 MZ10-205HIV-1KF927304None  V11VII15V, L19V, M36I, R41K, K43R, L63S, H69K, L89M, I93LC
 MZ09-003HIV-1KF927172None   I15V, G16A, L19V, M36L, L63S, H69K, L89M, I93LC
 MZ10-211HIV-1KF927310None   T12S, K14R, I15V, L19I, K20R, M36I, P39L, R41K, I62V, L63S, H69K, L89M, I93LC
 MzJun97HIV-1KF927396None   I15V, M36I, N37D, R41K, D60E, L63S, H69K, L89M, I93LC
 MZ10-221HIV-1KF927317None   T12S, L19V, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
Brooks (2013)CAN2013-126CAN13-126KF727732None   I15V, L19T, M36I, R41K, R57K, L63S, H69K, V82I, L89M, I93LC
 CAN2013-099CAN13-099KF727708None   T12S, I15IV, K20R, M36I, N37K, R41N, K45R, I62V, L63S, I64L, H69K, L89M, I93LC
 CAN2013-173CAN13-173KF727724None   T12S, K14R, I15V, L19I, M36I, N37D, R41K, D60E, L63S, H69K, L89M, I93LC
Chen (2013)11YNHH00811YNHH008JX412328None   I15V, L19I, M36L, N37D, D60E, L63S, I64L, H69K, L89M, I93LC
 11YNHH08111YNHH081JX412348None   T12S, I15V, L19I, M36I, N37D, R41K, K45R, D60E, L63S, H69K, I93LC
Frentz (2013)EHR-14604EHR-14604JX299780None   T12S, I15IV, L19I, M36I, R41K, Q61H, L63S, H69K, T74S, R87RT, L89M, I93LC
 EHR-20575EHR-20575JX299877None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93LC
 EHR-34213EHR-34213JX300118None   T12S, I13V, I15V, G16E, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 EHR-77225EHR-77225JX300865None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
Han (2013)YJ217006IYJ217006IJX070540None   T12S, K14R, I15V, L19I, M36IV, R41K, L63S, H69K, K70KR, V82VI, L89M, I93LC
Hassan (2013)RS09000940RS09000940HQ441682None   I15V, M36I, N37K, R41N, L63S, H69K, T74S, L89M, I93LC
Hawke (2013)2137667821376678KC238062None   I15V, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93LC
Kiertiburanakul (2013)R51011R51011KF059617None   T12S, I15V, G16E, L19T, M36I, R41K, L63S, H69K, I93LC
Leye (2013)SN.MS440SN.MS440FM210710None   T12S, L19T, M36I, R41K, L63S, H69K, I93LC
 SN.MS821SN.MS821FM210741None   L19I, M36T, R41K, L63S, H69K, L89M, I93LC
 SN.MS422SN.MS422FM210709None   L10V, G16E, L19I, M36I, L63S, H69K, I72V, I93LC
 SN.MS456SN.MS456FM210713None   L19T, M36T, R41K, L63S, H69K, L89M, I93LC
 SN.MS855SN.MS855FM210749None   T12S, L19T, M36I, R41K, L63S, H69K, I93LC
 SN.MS492SN.MS492FM210723None   T12S, L19I, M36I, R41K, L63S, H69K, I72V, L89M, I93LC
 SN.MS262SN.MS262FM210702None   T4TP, W6WC, T12S, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
Li (2013)20962096JQ302608None   T12S, I15V, L19I, M36I, R41K, K45R, D60E, L63S, H69K, L89M, I93LC
 22202220JQ302688None   T12S, I15V, G16E, L19I, M36V, R41K, D60E, L63S, H69K, K70R, L89M, I93LC
 21452145JQ302636None   T12S, I15V, L19I, M36I, R41K, D60E, L63S, C67Y, H69K, L89M, I93LC
Li (2013)hnr11hnr11KC987972None   T12S, K14R, I15V, L19I, M36L, N37D, R41K, L63S, H69K, A71V, I93LC
Mulu (2013)ETH-G-5477ETH-G-5477KF026209None   T12A, L19I, M36I, R41K, Q61D, L63S, H69K, I72T, V82I, I93LC
 ETH-G-5684ETH-G-5684KF026155None   K14R, I15V, L19V, K20R, M36I, N37D, R41K, R57K, L63S, H69K, L89M, I93LC
 ETH-G-5529ETH-G-5529KF026094None   T12S, I15V, L19V, M36I, R41K, L63S, I64M, H69K, L89M, I93LC
 ETH-G-5788ETH-G-5788KF026192None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93LC
 ETH-G-5689ETH-G-5689KF026158None   I15V, L19I, M36L, R41K, R57S, L63S, H69K, L89M, I93LC
Sunpath (2013)CAS080CAS080 None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 CAS079CAS079 None   T12S, I15V, L19V, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 CAS069CAS069 None   L10M, I15V, L19V, M36I, N37D, L63S, H69K, I72V, L89M, I93LC
 CAS081CAS081 None   T12S, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93LC
Tramuto (2013)CV1270_23CV1270_23HQ667677None   M36I, R41K, L63S, H69K, L89M, I93LC
 CV1273_28CV1273_28HQ667678None   K20KR, M36I, R41K, L63S, H69K, L89M, I93LC
Van Zyl (2013)1263875KC424331None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 13822035KC423578None   T12S, I15V, L19T, R41K, L63S, H69K, A71T, V77I, I93LC
 18272736KC423807None   T12S, I15V, L19I, M36I, L63S, H69K, L89M, I93LC
 10881163KC422928None   I15V, L19V, M36I, R41K, L63S, H69K, I93LC
 12501210KC422963None   I15V, G16E, L19T, K20M, E34A, M36I, R41K, L63S, H69K, I72M, V77I, I93LC
  2691KC423789None   I15V, G16E, L19T, K20M, E34AT, M36I, R41K, L63S, H69K, I72M, V77I, I93LC
 17673009KC423930None   I15V, L19V, M36I, R41K, L63S, H69K, I93LC
 1721030KC422819None   T12S, L19V, M36I, R41K, L63S, H69K, L89M, I93LC
 9552795KC423833None   T12S, I15V, G16A, L19I, N37S, R41K, R57N, L63S, H69K, L89M, I93LC
 168171KC423343None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, L89M, I93LC
 15592616KC423756None   T12S, I15V, L19V, E35D, M36I, N37D, R41K, L63S, I64M, H69K, L89M, I93LC
 16401645KC423294None   T12S, I15V, L19T, K20R, M36I, R41K, R57K, Q61D, L63S, H69K, V77I, I93LC
 5781701KC423337None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, T74S, L89M, I93LC
 9231766KC423389None   T12S, I15V, G16E, L19I, M36I, L63S, H69K, I72L, T74S, L89I, I93LC
 2091494KC423184None   T12S, K14R, I15V, L19V, E35D, M36I, R41K, L63S, H69K, L89M, I93LC
 4111334KC423068None   T12S, G16E, L19I, M36I, R41K, L63S, H69X, I93LC
  1885KC423485None   T12S, G16E, L19I, M36I, R41K, L63S, H69K, I93LC
 1202283KC423846None   I15V, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
  350KC424001None   I15V, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
 1081406KC424043None   T12S, I13V, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 6491822KC423435None   T12S, L19T, R41K, I62V, L63S, H69T, I72V, V77I, I93LC
 2561339KC423072None   L10I, L19T, K20R, M36I, R41K, L63S, E65D, H69K, L89M, I93LC
 449186KC423464None   T12S, I15V, L19I, M36I, N37E, L63S, H69K, L89M, I93LC
 1574635KC424193None   T12S, I15V, L19I, E35D, M36I, R41K, Q61E, L63S, H69K, K70KRC
 265696KC424231None   I15V, G16E, L19I, N37S, L63S, H69K, L89M, I93LC
 6741060KC422846None   T12S, L19T, E35D, M36I, R41K, R57RK, L63S, H69K, A71T, I93LC
 18092904KC423886None   T12S, I15V, L19T, M36I, R41K, L63S, H69K, I93LC
 15002900KC423884None   T12S, I15V, L19T, K20R, E35D, M36I, R41K, L63S, H69K, V82I, L89M, I93LC
 11331770KC423393None   I15V, L19T, E35D, M36I, R41K, D60E, Q61E, L63S, H69K, K70E, L89M, I93LC
 18103042KC423941None   I15V, L19T, K20R, E35D, M36I, N37D, R41K, L63S, H69K, I72IT, L89M, I93LC
 12142978KC423914None   T12S, I15V, L19I, M36I, R41K, L63S, H69K, I93LC
 14242094KC423612None   T12S, I15V, L19V, K20R, E35D, M36I, R41K, K45R, L63S, H69K, L89M, I93LC
 14131435KC423143None   I15V, L19I, K20R, M36I, R41K, L63S, H69K, V77I, L89M, I93LC
 4901981KC423542None   I15V, M36I, R41K, K45KR, R57K, D60E, L63S, H69K, V82I, L89M, I93LC
 12151239KC422989None   I15V, L19T, K20R, E35D, M36I, N37D, L63S, H69K, I72T, V82I, I93LC
 13971365KC423095None   K14R, L19I, E35D, M36I, R41K, L63S, C67E, H69KC
 15132674KC423778None   I15V, L19T, M36I, N37K, R41N, L63S, H69K, V82I, L89M, I93LC
 3871KC422792None   L19I, M36I, N37S, R41K, L63S, H69K, L89M, I93LC
Wu (2013)HF104HF104KC183778None   T12S, K14R, L19I, N37S, R41K, L63S, H69K, K70R, I72T, V82I, L89M, I93LC
Zeng (2013)cdh43cdh43KC352213None   T12S, L19I, M36V, R41K, D60E, L63S, H69K, G86E, L89M, I93LC