<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Protease Inhibitors

Subtype C
Gene PR
Mutation L63A
Rx PI-naive
IncludeMixtures No
References 98
Patients 228
Isolates 230
 
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Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# PIs WksPIMajorDRMs PIMinorDRMs OtherMutSubtype
Handema (2002)H00ZM4757H00ZM4757AB081160None   T12S, I15V, G16E, L19I, E35D, M36I, N37D, L63A, H69K, L89M, I93LC
 H00ZM4746H00ZM4746AB081157None   T12S, I15V, G16E, L19I, E35D, M36I, N37D, L63A, H69K, L89M, I93LC
Hierholzer (2002)SU256SU256AY102508None   I15V, L19M, K20R, M36I, L63A, H69K, L89M, I93LC
Holguin (2002)AH_M2489AH_M2489AF247020None   K14T, I15V, L19V, M36I, R41K, L63A, H69K, L89M, N98IC
 AH_M959AH_M959AF247019None   T12S, I15V, L19V, K20R, A22T, E35D, M36I, R41K, L63A, H69K, L89MC
Novitsky (2002)00BW389100BW3891AF443113None   I13V, I15V, L19I, M36I, N37S, R41K, L63A, H69K, L89M, I93LC
Pandrea (2002)IP_97CIRMF2297CIRMF22AY140617None   T12S, K14R, L19V, M36I, R41K, L63A, H69K, L89M, G94SC
Snoeck (2002)BE10BE10AF338997_8None   I15V, L19I, M36L, R41K, L63A, H69K, T74S, L89M, I93LC
Maljkovic (2003)MI_Pat4201SE21837AY165263None   T12S, I15V, L19T, K20R, M36I, N37K, R41N, I62V, L63A, H69K, I93LC
Vergne (2003)VL98SN66HPD98SN66AJ583722None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
Holguin (2004)IN0010IN0010AY551459None   T12S, K14KR, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
Arroyo (2005)CO3305CO3305AY734558None   I15V, L19V, E35D, M36I, R41K, L63A, H69K, T74S, L89M, I93LC
Balakrishnan (2005)YRG45YRG45AY787531None   Q7X, I15V, L19I, M36I, R41K, L63A, H69K, L89M, I93LC
 YRG29YRG29AY787515None   K14R, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 YRG24YRG24AY787510None   T12S, I15V, L19I, M36I, N37S, R41K, L63A, H69K, L89LM, I93LC
Bussmann (2005)01BW3368N01BW3368NAY829315None   T12S, I15V, L19I, E35D, M36I, R41K, I62V, L63A, H69K, A71T, I93LC
Eshleman (2005)ESH5062ESH5062AY756851None   T12S, I15V, G16E, L19I, N37C, L63A, H69K, I93LC
Grossman (2005)2058320583PR242 None   T12S, I15V, L19V, M36I, R41K, L63A, H69K, L89M, I93LC
Non-B Workgroup (2005)UK2147UK2147AY900857None   I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 SA83_DR28SA83_DR28AY901106None   I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 UK5067UK5067AY901221None   I15V, L19I, M36I, R41K, L63A, I64M, H69K, I93LC
Weber (2005)F44854F44854AY677440None   L10LV, I15V, G16E, L19LI, M36I, R41K, L63A, H69K, I93LC
Bessong (2006)POB_04J8129ZA04J8129ZADQ222273None   I15V, L19I, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
Lindstrom (2006)SIIDC0152SIIDC0152 None   I15V, E35D, M36I, R41K, L63A, H69K, V77I, L89M, I93LC
Parreira (2006)PG81PG81AM071445None   K14R, L19I, E35D, M36I, R41K, L63A, H69K, V77I, L89M, I93LC
Rousseau (2006)Pt10403SK066B1AY901969None   T12S, I15V, L19V, K20R, M36I, R41K, L63A, H69K, V77I, I93LC
 Pt14004PS161B1DQ164115None   T12S, I15V, L19V, K20R, E35D, M36I, P39S, R41K, K45R, Q61E, L63A, C67F, H69K, L89M, I93LC
Santos (2006)C049C049DQ191002None   I15V, M36L, N37R, R41N, L63A, H69K, V82I, L89M, I93LC
Church (2007)50625062EF602603None   T12S, I15V, G16E, L19I, N37C, L63A, H69K, I93LC
Kassu (2007)ETH-G-010G-010AB285755None  Q58ET12S, G16E, M36I, R41RK, K45R, L63A, H69K, L89M, I93LC
Martinson (2007)KEH142MKEH142MEU152467None   T12S, I15IV, L19I, M36I, L63A, H69K, T74S, L89M, I93LC
Novitsky (2007)08980898_7976EF026176None   T12S, I15V, L19I, N37S, R41K, I62V, L63A, H69K, A71T, V77I, I93LC
  0898_6451EF026177None   T12S, I15V, N37S, R41K, I62V, L63A, H69K, A71T, I72IV, V77I, I93LC
Razafindratsimandresy (2007)2727HIV-SEYEF143518None   I15V, L19I, M36I, L63A, H69K, L89M, I93LC
Sen (2007)N050RT50-PLEF186947None   T12TS, I15V, L19T, M36I, R41K, L63A, H69K, I93LC
Soundararajan (2007)TRC11TRC11EF491932None  Q58ET12S, K14R, I15IV, E35D, M36I, R41K, L63A, H69K, L89MC
Vidal (2007)U193002BU.U1930AM260232None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I72M, T74S, L89M, I93LC
 U083202BU.U0832AM260300None   T12S, L19V, M36I, N37K, R41N, L63A, H69K, V82I, L89M, I93LC
 U120602BU.U1206AM260306None   L10V, G16E, M36I, R41K, L63A, H69K, I93LC
Arora (2008)2PI-2 None   T12S, K14R, I15V, L19I, M36I, N37S, R41K, L63A, H69K, L89M, I93LC
 33PI-33 None   I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 34PI-34 None   I15V, G16X, L19T, M36I, R41K, L63A, H69K, I93LC
 35PI-35 None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
Holguin (2008)SP1-304517SP1-304517EU255374None   K14R, I15V, L19V, M36I, R41K, L63A, H69K, L89M, I93LC
Ibe (2008)167167AB356214None   T12TA, K14R, L19T, K20R, M36I, R41K, L63A, H69K, T74S, V77I, L89M, I93LC
Jacobs (2008)17791779EF602219None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, K45R, R57K, L63A, H69K, L89M, I93LC
Lahuerta (2008)P64735P64735_99EF407741None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63A, H69K, K70Q, T74S, V77I, L89M, I93LC
 P64848p64848_99EF407747None   T12S, I15V, L19V, R41K, L63A, H69K, L89M, I93LC
Lall (2008)G28G28-AFMC15EU158878None   I15V, L19I, M36I, R41K, L63A, H69K, I93LC
Marconi (2008)ICH18ICH18EU308009None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, L89M, I93LC
 SW027sw027EU308040None   I13V, I15V, L19I, M36I, R41K, L63A, I64M, H69K, V82VI, L89M, I93LC
 SW054sw054EU308065None  L33LFT12S, L19I, E35ED, N37NS, R41K, Q61N, L63A, H69K, L89M, I93LC
 SW077SW077EU308088None   T12S, L19V, M36I, R41K, L63A, H69K, L89M, I93LC
Matthews (2008)PS161PS161FJ199724None   T12S, I15V, L19V, K20R, E35D, M36I, N37D, Q61E, L63A, C67F, H69K, L89M, I93LC
 SK066SK066FJ199876None   T12S, I15V, L19V, K20R, M36I, R41K, L63A, H69K, V77I, I93LC
Nyombi (2008)TBK052TBK052EU251746None   T12S, I15V, L19I, M36I, N37K, R41N, L63A, H69K, V82I, I93LC
Pillay (2008)DR2802ZA.DR28AY589885None   I15V, L19I, M36I, R41K, L63A, H69K, I93LC
Bartolo (2009)LFA1601AOLFA16EU068266None   T12S, I15V, G16E, L19I, M36I, L63A, H69K, L89M, I93LC
Brown (2009)CAS_1257_16_196001CAS_1257_16_196001FJ030660None   I15V, G16E, M36V, N37S, L63A, H69K, L89M, I93LC
Hosseinipour (2009)93509350GQ228232None   L5LI, T12S, I15V, L19I, M36I, N37E, L63A, H69K, I93LC
 88218821GQ228285None   I15V, G16E, L19E, M36I, Q61N, L63A, I64L, H69K, K70R, L89M, I93LC
Iqbal (2009)100079100079EU449531None   T12S, K14R, L19V, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
Kandathil (2009)VL05_145VL05_145EU110060None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 VL05_147VL05_147EU110062None   T12S, L19I, M36I, R41K, L63A, H69K, I72M, V82I, L89M, I93LC
 VL06_135VL06_135EU744913None   K14R, I15V, G16E, M36I, R41K, R57K, L63A, H69K, K70R, L89M, I93LC
Rajesh (2009)N33TRCNPR33FJ595396None   I15V, G16E, L19I, M36I, R41K, L63A, H69K, I93LC
 N7TRCNPR7FJ595370None   L10I, T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63A, H69K, L89MC
 N17TRCNPR17FJ595380None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63A, H69K, L89MC
 F5TRCFPR5FJ595467None   L19I, M36I, R41K, L63A, H69K, L89MC
Tu (2009)10PBMC10EU518258None   T12S, I15V, L19I, M36I, R41K, D60E, L63A, I64L, H69K, L89M, I93LC
 39PBMC39EU518280None   T12S, L19I, M36V, R41K, K45R, D60E, L63A, I64L, H69K, L89M, I93LC
  plasma39EU518329None   T12S, L19I, M36V, N37NS, R41K, K45R, D60E, L63A, I64L, H69K, L89M, I93LC
Vercauteren (2009)pt14304680022633GQ399594None   T12S, I15V, L19I, M36I, N37D, L63A, H69K, I93LC
 pt6559081139073GQ400369None   T12S, I15V, L19I, M36I, N37D, L63A, I64M, H69K, L89M, I93LC
Wallis (2009)GT00367353GT00367353 None   T12S, I15V, L19I, E35D, M36I, P39Q, R41K, R57K, L63A, H69K, A71T, I93LC
 TJC2367413TJC2367413 None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63A, H69K, K70Q, T74S, L89M, I93ILC
 TJC2371601TJC2371601 None   T12TS, I15V, L19T, M36I, R41K, D60E, Q61E, L63A, H69K, L89M, I93LC
 TJC2436148TJC2436148 None   T12S, I15V, G16E, L19I, M36I, L63A, H69K, T74S, L89M, I93LC
 TJC2409902TJC2409902 None   T12S, L19T, K20R, M36I, R41K, L63A, H69K, L89M, I93LC
Yebra (2009)SP22-339826SP22-339826EU362922None   K14R, I15V, L19V, M36I, R41K, L63A, H69K, L89M, I93LC
Bonura (2010)1186_781186_78GU969543None   T12S, K14R, I15V, M36I, N37K, R41N, K45R, L63A, H69K, L89M, I93LC
Castelbranco (2010)090045A090045AHM357752None   T12S, I15V, L19I, M36I, R41K, D60E, Q61E, L63A, C67W, H69K, L89M, I93LC
Chaturbhuj (2010)2-0192-019FJ878965None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, K70R, T74A, L89M, I93LC
Diop-Ndiaye (2010)66HPD66HPDFN599720None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
El-Khatib (2010)Pat12811ZA_SAVE2471JF960578None   T12S, I15V, L19V, E35D, M36I, R41K, L63A, H69K, I93LC
Gonzalez (2010)KW5KW5GQ433838None   T12S, I15V, L19Q, M36I, R41K, L63A, H69K, I93LC
 KZ9KZ9GQ433844None   T12S, L19V, M36I, R41K, L63A, H69K, V82I, L89M, I93LC
 LV1LV1GQ433858None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 ND_8ND_8GQ433885None   I15V, L19I, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
 SO_2SO_2GQ433887None   T12S, I15V, L19T, M36I, L63A, H69K, L89M, I93LC
Ndembi (2010)16740D_P116740GQ409590None   T12S, I15V, L19V, M36I, N37K, R41N, L63A, H69K, L89M, I93LC
Papathanasopoulos (2010)1692306ZA16923GU253416None   T12S, I15V, G16E, L19T, K20M, E35D, M36I, I62V, L63A, H69K, A71T, I93LC
 1765707ZA17657GU253423None   T12S, I15V, L19V, N37S, R41K, L63A, H69K, T74A, L89M, I93LC
Rodrigues (2010)330_07BR07SC330GQ401325None   I15V, E35D, M36I, N37K, R41N, L63A, H69K, L89M, I93LC
Wright (2010)345SK345HM593350None   T12S, I15V, L19T, M36I, R41K, D60E, Q61E, L63A, H69K, L89M, I93LC
 63SK63HM593478None   T12S, I15V, L19T, E35D, M36I, R41K, L63A, H69K, T74S, L89M, I93LC
 66SK66HM593481None   T12S, I15V, L19V, K20R, M36I, P39PS, R41K, L63A, H69K, V77VI, I93LC
Yang (2010)20106934542010693454JQ616892None   T12S, I15V, L19V, M36I, R41K, L63A, H69K, L89M, I93LC
Bussmann (2011)B0690B0690JQ616996None   I15V, L19I, M36I, R41K, I62V, L63A, H69K, A71T, L89M, I93LC
 B0781B0781JQ617043None   I15V, L19T, M36I, R41K, I62V, L63A, H69K, A71T, I93LC
Charpentier (2011)12CP 001 765 None   T12S, L19I, M36I, R41K, L63A, H69K, T74S, L89M, I93LC
de Medeiros (2011)Pat005RS097JF487834None   I15V, K20R, M36L, N37K, R41N, L63A, H69K, V77I, L89I, I93LC
 Pat033RS074JF487862None   I15R, L24F, M36I, N37K, R41N, L63A, H69K, L89MC
Deshpande (2011)Pat049in1140JF414421None   T12PS, I15V, G16E, L19I, M36I, L63A, H69K, L89M, I93LC
 Pat022in1099JF414448None   T12S, I15V, L19I, M36IV, R41K, L63A, H69K, V82IC
Graf (2011)SC04SC04JF773984None   I15V, M36I, N37K, R41N, L63A, H69K, V82I, L89M, I93LC
Hamers (2011)300020CP076300020HM119616None   T12S, I15V, L19I, R41K, L63A, H69K, I93LC
 300047CP076300047HM119639None   T12S, I15V, L19I, E35D, M36I, R41K, I62V, L63A, I64IM, H69K, V82VI, L89M, I93LC
 300061CP076300061HM119650None   T12S, I15V, G16E, L19I, K20R, M36I, P39T, R41K, L63A, H69K, T74S, L89M, I93LC
 300088CP076300088HM119672None   T12P, K14R, I15V, L19V, E35D, M36I, R41K, K45KR, L63A, H69K, I72L, L89M, I93LC
 300093CP076300093HM119677None   I15V, L19I, M36I, R41K, L63A, H69K, L89M, I93LC
 300148CP076300148HM119724None   I13V, L19I, K20R, M36I, N37S, R41K, L63A, H69K, L89M, I93LC
 300151CP076300151HM119727None   P9X, T12S, I15V, L19V, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
 300155CP076300155HM119730None   T12S, L19I, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
 300181CP076300181HM119753None   I15V, G16E, L19I, M36I, N37NS, R41K, L63A, H69K, I93LC
 300182CP076300182HM119754None   L5F, I15V, L19I, M36I, R41K, D60E, Q61E, L63A, H69K, I93LC
 300404CP076300404HM119831None   T12S, L19IT, K20MR, E34EG, M36L, N37E, P39S, D60E, I62V, L63A, H69K, A71V, L89LM, I93LC
 300488CP076300488HM119907None   T12S, I15V, L19IV, M36I, L63A, H69K, L89LM, I93LC
 300624CP076300624HM120023None   T12S, I15V, L19T, K20R, E35D, M36I, R41K, L63A, H69K, I93LC
 300640CP076300640HM120037None  L33II13V, M36I, P39S, R41K, D60E, L63A, H69K, V82I, L89MC
 300681CP076300681HM120070None   I15V, L19V, E35D, M36I, N37ND, R41K, L63A, H69K, I72IL, L89LM, I93LC
 302379CP076302379HM120094None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 CP076305215CP076305215HQ994148None   I15V, L19V, M36I, R41K, L63A, H69K, V82I, L89M, I93LC
 CP076303165CP076303165HQ994183None   L19I, M36L, R41K, L63A, H69K, I72V, I93LC
 CP076303206CP076303206HQ994215None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 CP076303263CP076303263HQ994256None   I15V, M36I, R41K, K45R, D60E, L63A, H69K, L89M, I93LC
 CP076303283CP076303283HQ994272None   I15IV, L19I, E35D, M36I, N37D, R41K, R57K, L63A, H69R, I93LC
 CP076303284CP076303284HQ994273None   I13V, G16E, L19I, K20R, M36I, N37D, L63A, H69K, I93LC
 CP076305055CP076305055HQ994294None   Q7E, T12S, I15V, L19I, M36I, R41K, L63A, H69K, T74A, L89M, I93LC
 CP076305061CP076305061HQ994299None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, L89M, I93LC
 CP076305071CP076305071HQ994305None   I15V, L19I, E35D, M36I, R41K, D60E, Q61E, L63A, H69K, L89LM, I93LC
 CP076305073CP076305073HQ994307None   T12S, K14R, I15V, L19LIM, K20R, E35D, M36I, N37D, R57K, L63A, H69K, K70Q, V82I, I93LC
 CP076305124CP076305124HQ994345None   L19I, E21G, M36I, R41K, L63A, H69K, I72V, I93LC
 CP076300348CP076300348HQ994376None   T12S, G16E, L19I, E35D, N37H, L63A, H69K, V77I, L89M, I93LC
 CP076300395CP076300395HQ994399None   I15V, L19I, K20KR, N37NS, R41K, L63A, H69K, V77I, L89M, I93LC
 CP076301478CP076301478HQ994441None   T12S, I15V, L19AITV, K20R, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
 CP076301483CP076301483HQ994444None   I15V, L19T, K20R, E35D, M36I, R41K, L63A, H69K, P79D, V82I, L89M, I93LC
 CP076302123CP076302123HQ994493None   T12S, K14R, I15V, L19I, N37S, R41K, L63A, H69K, K70Q, V77I, I93LC
 CP076302126CP076302126HQ994496None   I15V, G16E, K20R, M36I, R41K, L63A, H69K, V77I, I93LC
 CP076302144CP076302144HQ994508None   L10V, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 CP076302161CP076302161HQ994514None   T4TN, L5S, W6L, R8RG, T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 CP076302182CP076302182HQ994527None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, T74A, L89M, I93LC
 CP763A03329CP763A03329HQ994641None   T12S, L19I, N37D, L38M, K45R, I62IV, L63A, H69Q, I72V, V77I, I93LC
 CP076300975CP076300975HQ994738None   T12S, I15V, L19T, K20R, E35D, M36I, R41K, L63A, H69K, T74S, V82VI, L89M, I93LC
 CP076301098CP076301098HQ994781None   I13V, I15V, L19V, M36I, R41K, L63A, H69K, T74S, L89M, I93LC
 CP076302685CP076302685HQ994824None   T12S, I15V, L19I, E35D, M36I, R41K, L63A, H69K, T74A, L89M, I93LC
 CP076302726CP076302726HQ994862None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, T74TS, L89M, I93LC
 CP763A01778CP763A01778HQ994874None   K14N, I15V, L19I, E35D, M36I, R41K, D60E, I62V, L63A, H69K, L89M, I93LC
 CP763A03353CP763A03353HQ994892None   T12S, I15V, G16E, L19I, K20R, E35D, M36I, R41K, D60E, Q61D, L63A, H69K, L89M, I93LC
 CP076300726CP076300726HQ994928None   I13V, I15V, G16E, K20R, M36I, R41K, L63A, H69K, V82VI, I93LC
Manasa (2011)10036691003669JN665004None   T12S, I15V, L19I, M36I, R41K, K45R, L63A, H69K, T74S, L89M, I93LC
 10052801005280JN665019None   L10V, I15V, L19I, E35D, M36I, N37A, R41K, D60E, L63A, H69K, L89M, I93LC
Nwobegahay (2011)BBVCT25ZABBVCT25ZAGU139592None   K14N, I15V, L19I, E35D, M36I, N37E, R41K, L63A, H69K, I72V, L89M, I93LC
Nwobegahay (2011)08MB34ZA08MB34ZAGU188821None   T12S, I15V, L19T, K20R, M36I, P39Q, R41K, Q61D, L63A, H69K, L89M, I93LC
 08MB43ZA08MB43ZAGU188826None   L5F, T12S, L19I, M36I, R41K, K43R, D60E, I62V, L63A, H69K, L89M, I93LC
 08MB61ZA08MB61ZAGU188841None   T12S, I15V, L19T, M36I, L63A, H69K, L89M, I93LC
Parboosing (2011)Pat014HRS193HQ844612None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, L89M, I93LC
Santos (2011)J90J90_PR_RTJN010463None   I15V, M36I, N37K, R41N, D60E, L63A, H69K, L89M, I93LC
 J133J133_PRJN010508None   K14R, I15V, M36I, N37K, R41N, D60E, L63A, H69K, L89M, I93LC
Thorat (2011)Pat006IN-NARI-HIVDR-5-006HQ166844None   L19V, E35ED, M36I, L63A, H69K, L89M, I93LC
 Pat011IN-NARI-HIVDR-5-011HQ166849None   L10I, T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 Pat018IN-NARI-HIVDR-5-018HQ166856None   T12S, I13V, K14R, I15V, G16E, L19I, M36I, R41K, D60E, Q61N, L63A, I64L, H69K, L89M, I93LC
 Pat025IN-NARI-HIVDR-5-025HQ166863None   T12S, I15V, L19I, M36I, L63A, H69K, L89M, I93LC
 Pat050IN-NARI-HIVDR-5-050HQ166886None   T12A, L19I, M36I, N37S, R41K, L63A, H69K, L89M, I93LC
van Zyl (2011)A17A17JN638098None   T12S, I15V, L19T, K20R, M36I, R41K, L63A, C67M, H69K, V77I, L89M, I93LC
 A175A175JN638103None   L5LF, K14R, I15V, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
 A221A221JN638130None   L10V, I15V, L19I, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
 A253A253JN638149None   I15V, L19I, M36I, N37D, R41K, L63A, E65G, I66VC
 A293A293JN638180None   T12S, I15V, Q18E, L19I, K20R, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
Wright (2011)OC_055OC_055HQ696830None   T12S, I15V, L19T, K20R, E35D, M36I, R41K, L63A, H69K, T74S, V75VI, L89M, I93LC
Zeng (2011)K26K26JF505535None   T12S, I15V, Q18L, L19I, M36I, R41K, D60E, L63A, H69K, L89M, I93LC
 K79K79JF505607None   T12S, L19I, M36V, R41K, D60E, L63A, H69K, L89M, I93LC
Chen (2012)YN09DH0164YN09DH0164JQ658621None   T12A, K14R, I15V, L19T, M36I, R41K, L63A, H69K, L89M, I93LC
 YN10DH0046YN10DH0046JQ658670None   T12S, K14R, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 YN10DH0132YN10DH0132JQ658752None   T12S, K14R, I15V, L19T, M36I, R41K, L63A, H69K, L89M, I93LC
De Gascun (2012)IRL02293IRL02293JN622821None   T12A, I15V, L19I, M36I, N37D, L63A, H69K, I93LC
 IRL08821IRL08821JN622991None   I15V, E35D, M36I, R41K, L63A, H69K, I93LC
 IRL18612IRL18612JN622998None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
Gaspareto (2012)AO66AO66PTHM752186None   I13V, M36I, N37K, R41N, L63A, H69K, L89IC
 GNH72GNH72PTHM752191None   I13V, I15V, K20R, M36I, N37K, R41N, I62V, L63A, H69K, I93LC
Hingankar (2012)IN-NARI-4-003IN-NARI-4-003JN314894None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, V82I, L89M, I93LC
 IN-NARI-4-051IN-NARI-4-051JN314937None   T12S, I15V, L19T, M36I, R41K, L63A, H69K, V82I, I93LC
Hunt (2012)KZN09_387618KZN09_387618KF736797None   T12S, L19I, K20R, M36I, R41K, L63A, H69K, L89M, I93LC
 GP06_191206GP06_191206KF736542None   I15V, L19I, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
 GP08_1813GP08_1813KF736669None   I15V, L19I, K20R, E35D, M36I, R41K, L63A, I64IV, H69K, I93LC
 GP08_0209GP08_0209KF736644None   K14NS, I15V, L19V, E35D, M36I, R41K, D60E, L63A, H69K, L89M, I93LC
 GP09_1178GP09_1178KF736730None   L10I, T12S, I15V, L19I, E35D, M36I, R41K, L63A, H69K, L89M, I93LC
Iweriebor (2012)07H06ZA07H06ZAGU201826None   I15V, L19I, M36I, R41K, K45R, L63A, H69K, L89M, I93LC
Musyoki (2012)DGM.30DGM.30JN176309None   K14N, I15V, L19I, M36I, N37S, L63A, H69K, L89M, I93LC
Nwobegahay (2012)BBCR42ZABBCR42ZAGU177487None   T12S, I15V, L19I, E35D, M36I, N37E, R41K, D60E, Q61E, L63A, H69K, L89M, I93LC
 MC21ZAMC21ZAGU177512None   I15V, L19T, N37S, R41K, L63A, H69K, V77I, L89M, I93LC
Sinha (2012)AIIMS-49AIIMS-49HQ453378None   L19I, M36I, R41K, L63A, H69K, L89M, I93LC
Zeng (2012)CN1344CN1344JQ028309None   T12S, I15V, L19I, M36I, N37S, R41K, D60E, L63A, H69K, L89M, I93LC
Alencar (2013)RJ2-0001RJ2-0001JQ237932None   L10I, N37K, R41N, L63A, I64M, H69K, I93LC
Bila (2013)MZ09-041HIV-1KF927201None   T12S, I15V, L19I, M36I, R41K, D60DE, L63A, H69K, K70KR, L89M, I93LC
 MZ09-008HIV-1KF927176None   T12S, I15V, L19I, M36I, R41K, L63A, H69K, I93LC
 MZ09-103HIV-1KF927232None   T12S, I15V, L19I, E35D, M36I, N37D, R41K, R57RK, D60E, L63A, I64IM, H69K, L89M, I93LC
 MZMAN12HIV-1KF927417None   L5F, T12S, I15V, L19I, M36I, N37T, R41K, I62V, L63A, H69K, I93LC
Brooks (2013)CAN2013-202CAN13-202KF727725None   T12S, I15V, L19T, K20R, E35D, M36I, R41K, R57K, L63A, H69K, L89M, I93LC
Chen (2013)11YNHH00311YNHH003JX412324None   I15V, L19I, M36I, R41K, D60E, L63A, H69K, L89M, I93LC
Frentz (2013)EHR-32554EHR-32554JX300090None   T12S, I15V, G16GR, L19IMR, E21EK, E34EK, M36I, R41K, K55KR, L63A, H69K, V82VI, I93LC
 EHR-62678EHR-62678JX300588None   I13V, I15V, M36I, R41K, G51E, L63A, E65ED, H69K, L89M, I93LC
Han (2013)LX219006ILX219006IJX070548None   T12A, I15V, L19T, M36I, R41K, L63A, H69K, T74TA, L89M, I93LC
Hawke (2013)2010652420106524KC238031None   T12TAS, K14KR, I15V, L19T, M36I, L63A, H69K, I93LC
Kiertiburanakul (2013)X12036X12036KC994370None   I15V, G17D, L19I, M36I, N37V, L63A, H69K, L89M, I93LC
Kiptoo (2013)KTL196KTL196KC517029None   T12TS, I15IV, L19IT, N37K, R41N, R57K, D60E, I62IV, L63A, I64IM, H69KR, V77I, L89LM, I93LC
Leye (2013)SN.MS522SN.MS522FM210725None   I15V, G16E, L19I, M36L, N37S, R41K, L63A, H69K, I72V, I93LC
Mulu (2013)ETH-G-5479ETH-G-5479KF026061None   K14I, I15IV, L19T, M36I, R41K, L63A, H69K, L89M, I93LC
 ETH-G-5595ETH-G-5595KF026130None   I15V, L19T, M36I, R41K, L63A, H69K, L89M, I93LC
 ETH-G-5740ETH-G-5740KF026180None   I15V, E35D, M36L, R41K, K43R, Q61N, L63A, H69K, T74A, L89M, I93LC
 ETH-G-5613ETH-G-5613KF026138None   I15V, E34EK, E35D, M36I, N37S, R41K, K55R, R57K, L63A, H69KC
 ETH-G-5552ETH-G-5552KF026111None   I15V, L19I, K20R, M36I, R41K, Q61E, L63A, H69K, L89M, I93LC
 ETH-G-5603ETH-G-5603KF026134None   I15V, G16E, M36I, R41K, L63A, H69K, L89M, I93LC
 ETH-G-5514ETH-G-5514KF026086None   I15V, L19I, E35D, M36I, R41K, R57K, L63A, H69K, T74S, L89M, I93LC
Sunpath (2013)CAS033CAS033 None   I15V, L19E, M36I, R41K, Q61N, L63A, E65D, H69K, I93LC
 CAS039CAS039 None   L19T, K20R, M36I, R41K, L63A, H69K, I93LC
Van Zyl (2013)11731347KC423078None   I15IV, L19I, M36I, R41K, L63A, H69K, I93LC
 14421626KC423281None   T12P, I15V, G16E, L19T, K20R, M36I, R41K, R57K, L63A, H69K, I93LC
 94682KC424295None   T12S, I15V, L19I, K20R, E35D, M36I, R41K, R57K, L63A, H69K, I93LC
 5602416KC423699None   T12S, I15V, G16E, L19I, E35D, M36I, R41K, K45R, D60E, Q61E, L63A, H69K, I72IM, L89M, I93LC
 16031895KC423494None   T12S, I15V, L19T, K20R, E35D, M36I, N37D, R41K, L63A, H69K, T74S, L89M, I93LC
 7503077KC423960None   L19T, M36I, R41K, L63A, H69K, I93LC
 2951359KC423090None   I15IV, G17D, L19I, M36I, R41K, D60E, Q61E, L63A, H69K, V82I, L89IM, I93LC
 17763056KC423947None   L10LI, T12TS, I15V, L19I, M36I, R41K, L63A, H69K, K70R, I93LC
 7051027KC422816None   K14R, L19I, M36I, R41K, L63A, H69K, V82I, L89M, I93LC
 1951046KC422832None  Q58ET12S, I15V, L19I, K20R, E35D, M36I, N37E, R41K, R57K, D60E, Q61E, L63A, H69K, I72V, I93LC
 1000668KC424216None   T12S, I15V, G16E, L19I, E35D, M36I, R41K, V56I, L63A, H69K, T74S, L89I, I93LC
 4713095KC423967None   L19T, K20R, M36I, R41K, L63A, H69K, V82I, L89M, I93LC
 17592694KC423790None   L5LF, T12S, L19I, M36I, R41K, L63A, H69K, T74S, L89M, I93LC
 17342154KC423654None   T12N, I15V, L19T, K20R, E35D, M36I, R41K, R57K, L63A, H69K, L89M, I93LC