<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Protease Inhibitors

Subtype C
Gene PR
Mutation M36L
Rx PI-naive
IncludeMixtures No
References 98
Patients 321
Isolates 325
 
Show mutation frequency as:
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Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# PIs WksPIMajorDRMs PIMinorDRMs OtherMutSubtype
Gibb (2002)DMG7878_w-18 None   T12S, I15V, L19I, E35D, M36L, N37DE, D60E, L63P, H69K, L89M, I93LC
Handema (2002)H00ZM4768H00ZM4768AB081166None   L19I, M36L, N37A, L63P, H69K, L89M, I93LC
Kantor (2002)TCDD-10TCDD-10 None   L10I, T12S, G17D, L19I, M36L, N37S, D60E, L63T, H69K, L89M, I93LC
Novitsky (2002)00BW388600BW3886AF443112None   T12S, I15V, L19I, T26I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 00BW175900BW1759AF443094None   T12S, I15V, L19V, M36L, N37A, L63P, H69K, L89M, I93LC
 98BWMC1298BWMC12AF443076None   T12S, L19I, K20R, M36L, N37S, L63P, H69K, L89M, I93LC
Snoeck (2002)BE7BE7AF338990None   T12S, I15V, L19I, M36L, N37S, R41K, L63T, H69K, L89M, F99FLC
 BE10BE10AF338997_8None   I15V, L19I, M36L, R41K, L63A, H69K, T74S, L89M, I93LC
 BE19BE19AF339017None   I15V, L19V, M36L, R41K, L63AV, H69K, I72IV, T74S, L89M, I93LC
Gordon (2003)ZA029p01ZA029p01AY136982None   T12S, K14R, I15V, L19I, M36L, R41K, H69K, L89M, I93LC
 ZA004p01ZA004p01AY136957None   T12S, K14R, I15V, L19I, M36L, R41K, L63P, H69K, L89M, I93LC
Johnston (2003)TC-51TC-51 None   T12S, I15V, L19I, E35D, M36L, N37E, D60E, L63P, H69K, L89M, I93LC
Shafer (2003)A384_34413441aEF549035None   T12S, I15V, L19T, K20R, M36L, R41K, L63P, H69K, I93LC
 A384_60006000aEF549367None   T12S, K14R, I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
Deshpande (2004)in12in12AY515738None   T12S, K14KR, I15V, M36L, N37S, R41K, Q61H, L63T, H69K, L89M, I93LC
 in71in71AY515785None   T12S, I15IV, L19T, K20R, M36L, N37S, R41K, L63ST, H69K, V82I, L89M, I93LC
 in15in15AY515741None   T12S, I15V, L19I, M36L, N37S, K55KQ, L63P, H69K, L89M, I93LC
 in59in59AY515774None   T12A, K14KR, I15V, L19I, M36L, N37H, R41K, L63P, H69K, I93LC
 in101in101AY515811None   T12S, I15V, L19T, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 in51in51AY515766None   T12S, I15V, L19I, M36L, N37NS, L63P, H69K, L89M, I93LC
 in111in111AY515821None   T12S, K14R, I15V, L19IV, M36L, R41K, L63P, I64M, H69K, L89M, I93LC
 in26in26AY515748None   T12S, K14R, I15V, L19I, M36L, R41K, L63P, H69K, L89M, I93LC
 in27in27AY515749None   T12S, K14R, I15V, L19I, M36L, R41K, L63P, H69K, L89M, I93LC
 in109in109AY515819None   T12S, K14KR, I15V, L19I, M36L, N37A, Q61QH, L63P, H69K, L89M, I93LC
 in36in36AY515755None   T12TS, I15IV, L19I, M36L, N37S, R41RK, L63P, H69K, K70KQ, L89M, I93LC
Gulick (2004)RG233RG233w121 None   T12S, K14R, I15V, L19T, M36L, R41K, L63P, H69K, L89M, I93LC
Holguin (2004)IN81071261IN81071261AY551448None   T12S, I15V, G16E, L19I, M36L, L63T, H69K, L89M, I93LC
Snoeck (2004)BE32BE32AY900737None   I15V, L19IT, M36L, R41K, L63V, H69K, T74S, L89M, I93LC
 BE49BE49AY900750None   I15V, L19V, M36L, R41K, L63V, H69K, I72V, T74S, L89M, I93LC
 BE70BE70AY900956None   I13V, I15V, L19I, M36L, N37S, R41K, L63V, H69K, T74S, L89M, I93LC
Balakrishnan (2005)YRG47YRG47AY787533None   T12S, I15V, L19I, M36L, N37H, R41K, L63P, H69K, L89M, I93LC
 YRG4YRG4AY787490None   M36L, N37S, R41K, L63P, H69K, K70R, L89M, I93LC
 YRG11YRG11AY787497None   I13V, I15V, L19I, K20R, M36L, N37C, R41K, L63P, H69K, L89M, I93LC
 YRG30YRG30AY787516None   I15V, L19T, K20R, M36L, N37S, R41K, L63P, H69K, V82VI, L89M, I93LC
 YRG41YRG41AY787527None   I13V, I15V, L19I, E21K, T26K, M36L, N37S, R41K, L63P, H69K, L89LM, I93LC
Bellocchi (2005)577MT000577GU199537None   T12S, I15V, L19IT, K20R, M36L, R41K, L63P, H69K, V77I, L89M, I93LC
 339MT000339GU199549None   T12TA, I15IV, L19I, M36L, R41K, H69K, V82I, L89M, I93LC
 1254MT001254GU199555None   T12S, I15V, L19I, M36L, N37A, R41K, H69K, L89M, I93LC
Bessong (2005)01PB1ZA01PB1ZAAY510031None   T12S, L19I, M36L, R41K, D60E, L63P, H69K, I93LC
Bussmann (2005)01BW3388N01BW3388NAY829319None   T12S, I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 01BW2064S01BW2064SAY829286None   T12S, I15V, G16E, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
 01BW451N01BW451NAY829307None   T12S, I15V, L19V, M36L, N37S, H69K, L89M, I93FC
Eshleman (2005)1693616936_BLAY746376None   T12S, I15V, G16E, L19I, M36L, N37E, P39S, I62V, L63P, H69K, A71T, I93LC
  16936_1YAY746377None   T12S, I15V, G16E, L19I, M36L, N37E, P39S, I62V, L63P, H69K, A71T, I93LC
  16936_2YAY746378None   T12S, I15V, G16E, L19I, M36L, N37E, P39S, I62V, L63P, H69K, A71T, I93LC
Eshleman (2005)ESH9028ESH9028AY756878None   T12S, I15V, L19I, E35D, M36L, R41K, R57K, D60E, Q61N, H69K, K70KR, V77VI, L89M, I93LC
Non-B Workgroup (2005)UK466UK466AY900774None   I15V, L19T, K20R, M36L, R41K, H69K, V77I, L89M, I93LC
 UK473UK473AY900775None   T12S, I15V, L19I, M36L, N37H, R41K, L63P, H69K, V77I, L89M, I93LC
 UK2033UK2033AY900842None   T12S, I15V, L19I, M36L, R41K, I62V, L63V, H69K, A71T, I93LC
 UK4903UK4903AY901203None   T12S, K14R, I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 UK4480UK4480AY901224None   I13V, M36L, N37E, R41K, L63LP, H69K, K70R, L89IMC
 PL4999292981 None   I15V, M36L, N37S, L63P, H69K, L89M, I93LC
Petch (2005)LP12MAL-12PRAY860471None   I15V, L19I, K20R, M36L, N37S, R41K, H69K, V77I, L89M, I93LC
Vazquez de Parga (2005)RU00054RU00054EU345720None   T12S, I15V, L19I, M36L, N37H, R41K, L63V, H69K, L89M, I93LC
Weber (2005)F95995F95995AY677443None   T12S, I13V, I15V, L19I, M36L, N37S, R41K, L63V, H69K, T74S, L89M, I93LC
Jayaraman (2006)3-00-01223-00-0122 None   T12S, I15V, L19V, M36L, R41K, D60E, H69R, L89M, I93LC
Parreira (2006)PG24PG24AM071417None   T12S, I15V, L19I, K20R, M36L, R41K, L63P, H69K, K70Q, V77I, L89M, I93LC
 PG184PG184AM071419None   T12S, I15V, L19I, E35D, M36L, R41K, K45R, D60E, L63P, H69K, L89M, I93LC
 PG22PG22AM071421None   T12S, I15V, L19I, K20R, M36L, R41K, L63S, H69K, K70Q, L89M, I93LC
 PG17PG17AM071439None   T12S, I13V, I15V, L19I, M36L, N37C, R41K, L63T, H69K, L89MC
Rodrigues (2006)BR04RS153BR04RS153DQ070609None   I15V, M36L, N37K, R41N, H69K, L89MC
Rousseau (2006)Pt4303PS081MB1DQ351219None   I15V, L19I, M36L, N37A, H69K, L89M, I93LC
 Pt6403PS122MB1DQ396370None   T12S, I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
 Pt14304PS169MB1DQ396393None   T12S, I15V, L19I, K20R, M36L, N37S, R41K, L63P, H69K, V77I, L89M, I93LC
 Pt15904PS202B1DQ093598None   T12S, I15V, L19I, K20R, E35D, M36L, N37D, R41K, L63P, I64M, H69K, L89M, I93LC
 Pt2421184MBAY585267None   T12S, I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 Pt2451195MBAY463220None   T12S, I15V, L19V, D25G, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
Santos (2006)C049C049DQ191002None   I15V, M36L, N37R, R41N, L63A, H69K, V82I, L89M, I93LC
Dilernia (2007)F379F379EF120254None   I15V, M36L, N37K, R41N, H69K, L89M, I93LC
Kassu (2007)ETH-G-187G-187AB285817None   I15V, L19T, M36L, R41K, H69K, T74S, L89M, I93LC
Novitsky (2007)10251025_0078EF026178None   T12S, I15V, L19V, M36L, N37S, R41K, H69K, L89I, I93LC
  1025_0773EF026179None   T12S, I15V, L19V, M36L, N37S, R41K, L63P, I64IM, H69K, L89I, I93LC
 16041604_0753EF026215None   I15V, L19I, M36L, D60E, L63S, H69K, L89M, I93LC
 17081708_5064EF026223None   I15V, L19I, K20R, M36L, N37S, L63T, H69K, V77I, L89M, I93LC
Sen (2007)N054RT54-PLEF186935None   I15V, L19LI, M36L, N37S, L63P, H69K, L89M, I93LC
 N032RT32-PLEF186938None   T12S, I15V, L19I, M36L, N37S, L63P, H69K, V82I, L89M, I93LC
 N024RT24-PLEF186940None   I15V, L19I, M36L, R41K, L63P, H69K, G94V, N98SC
 T013NPT13-PLEF186968None   T12S, K14R, I15V, L19I, M36L, R41K, L63P, H69K, V82I, I93LC
Soundararajan (2007)TRC7TRC7EF491929None   I15V, L19T, M36L, N37T, L63P, H69K, I72V, I93LC
Vicenti (2007)492168542REF376501None   T12S, I15V, L19IT, M36L, R41K, L63S, H69K, I93LC
Vidal (2007)U071002BU.U0710AM260290None   T12S, I15V, L19I, M36L, N37K, R41N, H69K, L89I, I93LC
Zhong (2007)D007505CN_075EF199603None   T12S, I15V, L19I, M36L, R41K, D60E, L63P, H69K, L89M, I93LC
Arora (2008)15PI-15 None   I15V, G16X, L19I, M36L, N37A, L63T, H69K, V82I, I93LC
 45PI-45 None   I15V, L19I, M36L, N37A, L63T, H69K, L89M, I93LC
 57PI-57 None   I15V, G16X, L19T, M36L, R41K, D60E, L63S, I64L, H69K, L89M, I93LC
Ferreira (2008)448BR05PR448EU340722None   L10I, I15V, L19I, M36L, N37R, R41N, H69K, L89M, I93LC
Kamoto (2008)MW2MW2JQ617131None   L19I, K20R, M36L, P39S, R41K, L63P, H69K, V77I, V82I, L89M, I93LC
 MW60MW60JQ617173None   I15V, L19I, K20R, M36L, N37A, I62V, H69K, L89M, I93LC
Lahuerta (2008)P348435p348435_04EF407730None   I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 P64692P64692_99EF407739None   T12S, K14R, I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
Lall (2008)G36G36-AFMC20EU158883None   T12S, I15V, Q18QH, L19I, M36L, N37NS, R41RK, L63P, I64M, H69K, L89M, I93LC
 G57G57-AFMC29EU158892None   T12P, I15V, L19IT, E35D, M36L, R41K, L63P, H69K, A71V, I72V, I93LC
 G62G62-AFMC35EU447780None   T12P, I15V, L19I, M36L, N37S, L63P, H69K, L89M, I93LC
Marconi (2008)ICH10ICH10EU308003None   T12S, I15V, G16E, L19I, M36L, N37T, H69K, L89M, I93LC
 SW045sw045EU308058None   I15V, L19I, M36L, N37S, R41K, L63P, H69K, I93LC
Matthews (2008)11841184FJ199547None   T12S, I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 11951195FJ199550None   T12S, I15V, L19V, D25G, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 PS060PS060FJ199641None   T12S, L19I, M36L, R41K, H69K, L89M, I93LC
 PS065PS065FJ199646None   I15V, L19T, M36L, N37S, R41K, Q61E, H69K, V82I, L89M, I93LC
 PS081PS081FJ199658None   I15V, L19I, M36L, N37A, H69K, L89M, I93LC
 PS122PS122FJ199694None   T12S, I15V, L19I, T31A, M36L, N37S, R41K, H69K, L89M, I93LC
 PS169PS169FJ199730None   T12S, I15V, L19I, K20R, M36L, N37S, R41K, L63P, H69K, V77I, L89M, I93LC
 PS202PS202FJ199758None   T12S, I15V, L19I, K20R, E35D, M36L, N37D, R41K, L63P, I64M, H69K, L89M, I93LC
 PS402PS402FJ199809None   T12S, I15V, L19I, K20R, E35D, M36L, N37D, R41K, L63P, I64M, H69K, L89M, I93LC
Pillay (2008)DR8003ZA.DR80AY589924None   T12TS, I15V, L19IM, K20R, M36L, N37S, R41K, Q61N, L63S, H69K, V77I, L89M, I93LC
Bartolo (2009)HDP7101AOHDP71EU068243None   I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 HJM6001AOHJM60EU068255None   Q7R, R8X, K14R, I15V, L19V, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 LFA1501AOLFA15EU068265None   T12S, I15V, G16E, L19I, K20M, M36L, N37S, L63N, H69K, L89I, I93LC
 HM18301AOHM183EU068322None   T12S, I15V, L19V, M36L, N37S, R41K, H69K, L89IM, I93LC
Hosseinipour (2009)94469446GQ228200None   T12S, I15V, L19I, K20KR, M36L, N37S, R41K, Q58Q*, L63P, H69K, V77VI, L89M, I93LC
 70817081GQ228202None   T12S, I15V, L19I, M36L, N37S, R41K, H69K, K70KR, I72IM, L89M, I93LC
 93669366GQ228223None   I15V, L19I, K20R, M36L, N37AGST, H69K, V77VI, L89M, I93LC
 94349434GQ228246None   I15V, Q18E, L19T, K20R, M36L, N37S, H69K, V77I, L89M, I93LC
 94249424GQ228271None   T12S, I15V, L19I, K20R, E35D, M36L, R41K, L63P, H69K, V77I, L89M, I93LC
 85148514GQ228287None   T12S, I15V, L19I, M36L, R41K, D60E, I62V, L63S, I64M, H69K, L89M, I93ILC
Iqbal (2009)100693100693EU449552None   T12P, K14R, L19I, M36L, N37S, L63T, H69K, L89M, I93LC
Kandathil (2009)VL07_368VL07_368EU683791None   T12S, I15V, L19I, M36L, N37A, L63P, H69K, L89M, I93LC
Kandathil (2009)VL07_231VL07_231EU683761None   T12S, I15V, L19I, M36L, R41K, K45R, L63T, H69K, T74A, L89M, I93LC
Kandathil (2009)CD06_415CD06_415EU683768None   I15V, L19I, M36L, L63P, H69K, L89M, I93LC
Kousiappa (2009)CY166CY166EU673400None   T12S, I15V, L19I, M36L, N37A, L63P, H69K, L89M, I93L, L97LIC
Rajesh (2009)N32TRCNPR32FJ595395None   T12S, I15V, L19I, M36L, N37S, R41K, D60E, L63P, I64L, H69K, K70R, V82I, L89M, I93LC
 N47TRCNPR47FJ595410None   T12S, I15V, L19I, M36L, N37S, L63S, H69K, V82I, L89M, I93LC
 N13TRCNPR13FJ595376None   K14R, I15V, L19I, M36L, N37S, R41K, K45R, L63P, H69K, L89M, I93LC
 N74TRCNPR74FJ595437None   T12TS, I15V, G16E, L19I, M36L, N37S, Q61EG, L63ST, H69K, I72T, V82I, I93LC
Vercauteren (2009)pt13455140951757GQ399679None   I15V, L19I, M36L, N37S, R41K, L63V, H69K, L89M, I93LC
 pt11496275426276GQ399875None   T12S, I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
 pt8138312321855GQ400211None   T12PS, I15V, L19I, M36L, N37S, R41K, L63V, H69K, L89M, I93LC
 pt373h2C1Zlql7BGQ400651None   I15V, L19Q, M36L, L63P, H69K, L89M, I93LC
Wallis (2009)GT00364925GT00364925 None   G17D, L19I, M36L, N37K, R41K, L63P, H69K, L89M, I93LC
 TJC2394973TJC2394973 None   K14R, I15V, L19I, K20R, E35D, M36L, N37E, R41K, D60E, H69K, V82I, L89M, I93LC
 TJC2394661TJC2394661 None   I15V, G16E, L19I, M36L, N37S, R41K, D60E, Q61E, H69K, L89M, I93LC
 TJC2443711TJC2443711 None   T12S, I15V, L19V, E34EK, M36L, N37S, L63P, H69K, I93LC
 23167962316796 None   I15V, G16E, L19I, M36L, N37S, L63V, H69K, T74S, L89M, I93LC
 22847082284708 None   T12S, I15V, L19I, K20R, M36L, N37CS, R41K, L63P, H69K, V77I, L89M, I93LC
Chaturbhuj (2010)1-0111-011FJ878941None   T12S, I15V, L19I, M36L, N37NS, R41K, L63P, H69K, L89M, I93LC
 2-0042-004FJ878950None   T12S, K14R, I15V, L19T, K20R, M36L, N37D, L63P, H69K, I93LC
 2-0122-012FJ878958None   T12S, I15V, L19I, M36L, N37D, R41K, L63P, I64L, H69K, I93LC
 2-0152-015FJ878961None   T12S, K14R, I15V, L19I, E35D, M36L, R41K, L63P, H69K, V82VI, I93LC
Gonzalez (2010)983_M30m983_M30mGQ427126None   T12S, I15V, L19I, M36L, N37S, H69K, L89M, I93LC
 1770_M00m1770_M00mGQ427132None   I15V, L19I, M36L, N37C, R41K, L63T, H69K, V82I, L89M, I93LC
 KB2KB2GQ433816None   T12S, I15V, L19I, M36L, I62V, L63P, H69K, T74S, L89M, I93LC
 KLesa7KLesa7GQ433824None   T12S, I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
Hattori (2010)C06-51110379C06-51110379AB864786None   Q7R, T12P, L19T, K20R, M36L, N37D, L63P, H69K, L89M, I93LC
Mosha (2010)S33PolS33PolJQ071476None   L10I, I15V, M36L, N37K, R41N, L63P, H69K, I93LC
Papathanasopoulos (2010)1789807ZA17898GU253396None   T12S, I15V, G16E, L19I, E35D, M36L, R41K, D60E, H69K, V82VI, L89M, I93LC
Rodrigues (2010)353_07BR07SC353GQ401332None   I15V, L19I, M36L, N37K, R41N, H69K, L89M, I93LC
Wright (2010)207SK207HM593215None   T12S, I15V, L19I, M36L, R41K, D60E, H69K, L89M, I93LC
 24SK24HM593244None   T12S, I15V, L19I, M36L, N37S, R41RK, H69K, L89M, I93LC
 302SK302HM593306None   T12S, I15V, L19V, M36L, N37K, R41K, H69K, L89M, I93LC
 311SK311HM593316None   I15V, L19I, M36L, N37NS, R41K, L63P, H69K, L89M, I93LC
 327SK327HM593331None   T12TS, I15IV, L19I, M36L, N37S, R41K, L63S, I64M, H69K, L89M, I93LC
 357SK357HM593363None   L19T, M36L, R41K, K45KR, L63LAPV, H69K, K70KT, L89M, I93LC
Yang (2010)20106934502010693450JQ616889None   I15V, L19V, M36L, N37S, P39S, R41K, H69K, L89M, I93LC
 20106934622010693462JQ616896None   I15V, L19V, M36L, R41K, L63P, H69K, I93LC
 20106934762010693476JQ616901None   L10V, I13V, L19V, M36L, R41K, H69K, L89MC
Bussmann (2011)B0544B0544JQ616989None   L19I, M36L, N37S, H69K, L89M, I93LC
 B0687B0687JQ616994None   I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 B0622B0622JQ617105None   I15V, L19I, M36L, P39S, R41K, D60E, L63P, H69K, L89M, I93LC
 B0652B0652JQ617117None   I15V, L19T, M36L, N37S, R41K, H69K, L89M, I93LC
de Medeiros (2011)Pat005RS097JF487834None   I15V, K20R, M36L, N37K, R41N, L63A, H69K, V77I, L89I, I93LC
Deshpande (2011)Pat038in1122JF414432None   T12S, I15V, G16E, L19I, M36L, N37C, L63AT, H69K, L89M, I93LC
 Pat013in1066JF414458None   I15V, L19T, M36L, N37S, R41K, L63P, H69K, V82I, L89M, I93LC
 Pat004in1025JF414466None   T12S, G16E, L19V, M36L, N37S, L63T, H69K, V82I, L89M, I93LC
Hamers (2011)300006CP076300006HM119606None   T12S, I15V, L19I, E35D, M36L, N37S, R41K, I62V, L63V, H69K, T74S, V82VI, L89MC
 300027CP076300027HM119623None   I15V, L19I, M36L, N37S, H69K, L89M, I93LC
 300034CP076300034HM119628None   T12S, I15V, Q18E, L19I, E35D, M36L, P39PT, R41K, I62V, L63V, H69K, T74S, L89MC
 300116CP076300116HM119693None   M36L, L63P, H69K, I93LC
 300145CP076300145HM119721None   T12S, I15V, L19I, M36L, N37A, L63P, H69K, K70Q, L89M, I93LC
 300196CP076300196HM119767None   T12S, G16A, L19I, M36L, R41K, L63LP, H69K, T74S, V75VI, L89M, I93LC
 300252CP076300252HM119804None   I15V, L19I, E35D, M36L, N37ND, R41K, R57K, D60E, Q61QE, L63P, H69K, I93LC
 300290CP076300290HM119823None   L10V, I15V, G16E, L19I, K20R, M36L, N37S, R41K, L63T, I64IV, H69K, I93LC
 300404CP076300404HM119831None   T12S, L19IT, K20MR, E34EG, M36L, N37E, P39S, D60E, I62V, L63A, H69K, A71V, L89LM, I93LC
 300407CP076300407HM119834None   I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 300481CP076300481HM119900None   W6R, T12S, I13V, I15L, L19I, E35D, M36L, N37K, L63V, H69K, T74S, L89M, I93LC
 300539CP076300539HM119953None   L10I, I15V, L19T, E35D, M36L, R41K, K45R, D60E, I62IV, H69Q, V77VI, L89M, I93LC
 300615CP076300615HM120015None   T12S, I15V, L19I, M36L, N37S, R41RK, L63V, H69K, T74S, L89M, I93LC
 300643CP076300643HM120039None   I15V, L19I, M36L, N37S, L63V, H69K, T74S, L89M, I93LC
 302362CP076302362HM120088None   T12S, I15V, L19I, M36L, R41K, D60E, I62V, L63P, H69K, L89LM, I93LC
 302398CP076302398HM120105None   I15V, L19X, M36L, N37NS, R41K, L63P, H69K, L89M, I93LC
 302408CP076302408HM120109None   T12TS, I15V, G16E, L19I, M36L, N37AS, R41RK, L63Q, H69K, I72IV, L89M, I93LC
 CP076301554CP076301554HQ993597None   T12S, I15V, L19I, M36L, R41HN, L63T, H69K, L89M, I93LC
 CP076303157CP076303157HQ994177None   T12S, I15V, L19I, M36L, N37S, R41K, Q61QH, I62IV, L63LI, H69K, K70R, V82I, L89IC
 CP076303161CP076303161HQ994179None   T12S, I15V, L19I, M36L, R41K, K45R, L63P, H69K, L89M, I93LC
 CP076303165CP076303165HQ994183None   L19I, M36L, R41K, L63A, H69K, I72V, I93LC
 CP076303197CP076303197HQ994209None   T12S, I15V, L19I, E35D, M36L, N37D, R41K, D60E, Q61QE, L63P, H69K, L89M, I93LC
 CP076303240CP076303240HQ994239None   I15V, L19I, M36L, R41K, L63T, H69K, I93LC
 CP076305040CP076305040HQ994281None   T12A, I15V, L19I, M36L, L63P, H69K, I93LC
 CP076305098CP076305098HQ994325None   I15V, L19I, M36L, R41K, H69K, T74S, L89M, I93LC
 CP076305103CP076305103HQ994329None   T12S, I15V, L19I, M36L, R41K, L63P, I64L, H69K, L89M, I93LC
 CP076303158CP076303158HQ994348None   T12S, I15V, L19I, K20R, E35D, M36L, L63PS, H69K, V82I, I93LC
 CP076300340CP076300340HQ994375None   T12S, I15V, L19V, E35D, M36L, R41K, D60E, L63P, H69K, V77I, L89M, I93LC
 CP076301440CP076301440HQ994414None   T12S, I15V, L19T, K20R, M36L, R41K, Q61QHKN, L63P, H69K, V82I, L89M, I93LC
 CP076301520CP076301520HQ994466None   I15V, L19V, M36L, N37S, R41RK, K45R, L63S, H69K, L89M, I93LC
 CP076301524CP076301524HQ994469None   I15V, L19V, M36L, R41RK, D60E, Q61E, L63P, H69K, L89M, I93LC
 CP076302108CP076302108HQ994481None   T12S, I15V, L19I, M36L, R41K, D60E, Q61E, L63P, H69K, I93LC
 CP076300903CP076300903HQ994531None   T12S, I15V, L19IT, K20R, M36L, N37S, L63P, H69K, V77I, L89M, I93LC
 CP076300940CP076300940HQ994553None   T12S, I15V, L19T, K20R, E35D, M36L, N37D, R41K, D60E, Q61E, I62V, L63P, H69K, A71AT, V77I, I93LC
 CP076301092CP076301092HQ994607None   T12S, I13V, I15V, L19I, M36L, N37S, D60E, L63P, H69K, L89M, I93LC
 CP763A03317CP763A03317HQ994634None   I15V, L19I, M36L, R41K, L63T, H69K, V82I, L89M, I93LC
 CP763A03320CP763A03320HQ994636None   T12S, I15V, G16E, L19I, M36L, N37S, L63IT, H69K, I72IV, L89LM, I93LC
 CP763A03403CP763A03403HQ994661None   L19I, K20R, E35X, M36L, R41K, H69K, L89M, I93LC
 CP763A03640CP763A03640HQ994682None   T12S, I15V, Q18QE, L19I, K20R, M36L, R41K, D60E, Q61E, I62V, H69K, V77I, L89M, I93LC
 CP076300919CP076300919HQ994712None   K14R, I15V, L19I, M36L, R41K, H69K, K70Q, L89M, I93LC
 CP076300943CP076300943HQ994719None   T12S, I15V, G16E, L19I, M36L, R41K, L63H, H69K, L89I, I93LC
 CP076302709CP076302709HQ994847None   T12S, I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 CP763A03349CP763A03349HQ994888None   I15V, L19I, M36L, N37A, L63P, H69K, L89M, I93LC
Kasang (2011)1719217192HM572398None   T12S, I15V, Q18H, L19I, M36L, N37R, R41N, Q61N, L63S, I64IL, H69K, V82I, L89M, I93LC
Manasa (2011)10015331001533JN664984None   T12S, I15V, L19I, M36L, N37S, R41K, K45R, H69K, L89M, I93LC
 10017571001757JN664989None   K14S, L19I, M36L, N37K, R41K, Q61D, L63P, H69K, L89M, I93LC
 10029721002972JN664998None   T12S, I15V, G16E, L19I, M36L, L63T, C67Y, H69K, T74S, L89M, I93LC
 10035751003575JN664999None   T12S, L19I, M36L, L63I, H69K, L89M, I93LC
 10051961005196JN665018None   I15V, G16E, L19I, M36L, N37S, H69K, L89M, I93LC
 10126061012606JN665040None   L19V, M36L, N37E, H69K, L89M, I93LC
Nwobegahay (2011)BBVCT13ZABBVCT13ZAGU139586None   L19T, M36L, R41K, Q61N, L63P, H69K, T74S, L89M, I93LC
 BBVCT53ZABBVCT53ZAGU139606None   T12S, L19I, K20R, M36L, H69K, L89MC
Nwobegahay (2011)08MB77ZA08MB77ZAGU188743None   T12S, I15V, L19T, K20R, M36L, R41K, L63P, H69K, V77I, L89M, I93LC
 08MB50ZA08MB50ZAGU188832None   L10I, T12S, I15V, L19T, M36L, N37S, R41K, L63V, H69K, L89MC
 08MB52ZA08MB52ZAGU188834None   T12S, K14R, I15V, L19I, M36L, R41K, L63S, H69K, L89M, I93LC
 08MB55ZA08MB55ZAGU188835None   L10V, L19I, E35D, M36L, R41K, K45R, H69K, T74S, L89MC
Santos (2011)J59J59_PR_RTJN010446None   T12P, I15V, M36L, R41N, L63P, H69K, L89M, I93LC
 J110J110_PRJN010474None   T12P, M36L, N37K, R41N, L63P, H69K, L89M, I93L, T96AC
 J135J135_PR_RT_CN_RHJN010512None   I15V, M36L, N37K, R41N, K45R, L63LP, H69K, L89M, I93LC
 J140J140_PRJN010521None   T12P, I15V, M36L, N37K, R41N, V56A, L63P, H69K, L89M, I93LC
 J172J172_PRJN010568None   T12P, M36L, N37K, R41N, L63P, H69K, L89M, I93LC
Sigaloff (2011)GT0044838GT0044838_2JN381618None   T12S, I15V, L19I, M36L, R41P, D60E, I62V, L63P, I64M, H69K, L89M, I93LC
Thorat (2011)Pat008IN-NARI-HIVDR-5-008HQ166846None   T12PS, I15V, L19IM, M36L, N37S, R41K, D60E, L63P, H69K, L89M, I93LC
 Pat009IN-NARI-HIVDR-5-009HQ166847None   T12P, I13IV, I15V, L19I, M36L, N37S, L63P, H69K, V82I, L89M, I93LC
van Zyl (2011)A173A173JN638102None   T12S, I15V, L19I, E35D, M36L, R41K, H69K, I72V, L89I, I93LC
 A266A266JN638158None   I15V, L19I, M36L, N37S, R41K, L63P, H69K, I93LC
 A325A325JN638194None   T12S, I15V, L19IV, E35ED, M36L, N37S, R41K, R57RK, L63P, H69K, L89M, I93LC
 A63A63JN638219None   I15V, L19T, E35D, M36L, R41K, D60E, L63P, H69K, L89M, I93LC
Wright (2011)QT_044QT_044HQ696847None   T12S, I15V, L19V, M36L, N37S, R41K, V56VI, L63P, H69K, L89M, I93LC
Zeng (2011)K82K82JF505610None   T12S, I15V, L19I, M36L, R41K, D60E, L63S, H69K, L89M, I93LC
Afonso (2012)ANG59ANG59JN937071None   M36L, R41K, L63A, H69K, K70R, L89M, I93LC
 ANG99ANG99JN937105None   M36L, P39L, L63P, H69K, L89M, I93LC
 ANG83ANG83JN937095None   M36L, N37S, R41K, L63P, H69K, L89M, I93LC
Chen (2012)YN10DH0036YN10DH0036JQ658660None   T12S, I13V, K14R, I15V, L19I, K20R, M36L, N37S, L63P, H69K, L89M, I93LC
De Gascun (2012)IRL63686IRL63686JN623032None   I15V, G16E, L19I, M36L, N37T, P39S, R41K, K45KR, L63T, H69K, L89M, I93LC
Hingankar (2012)IN-NARI-4-007IN-NARI-4-007JN314898None   T12S, I15V, L19I, M36L, R41K, L63P, H69K, K70KR, L89M, I93LC
 IN-NARI-4-021IN-NARI-4-021JN314910None   T12S, I15V, L19I, M36L, N37DE, R41K, D60E, L63P, H69K, I93LC
 IN-NARI-4-024IN-NARI-4-024JN314913None   T12S, I15V, L19I, M36L, N37S, L63P, H69K, I72V, I93LC
 IN-NARI-4-061IN-NARI-4-061JN314943None   T12S, I13V, I15V, L19I, M36L, N37S, R41K, D60DE, Q61QE, L63P, H69K, L89M, I93LC
 IN-NARI-4-106IN-NARI-4-106JN314981None   T12S, I15V, L19T, M36L, N37S, R41K, L63PT, H69K, L89M, I93LC
Hunt (2012)KZN09_382962KZN09_382962KF736774None   T12P, I15V, L19I, M36L, R41K, H69K, L89M, I93LC
 KZN07_247323KZN07_247323KF736618None   I15V, L19I, M36L, R41K, H69K, T74S, L89M, I93LC
 GP06_189034GP06_189034KF736530None   T12S, I15V, L19I, K20R, M36L, R41K, L63S, C67Y, H69K, V77I, V82I, L89I, I93LC
 GP07_221682GP07_221682KF736598None   T12S, I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
 KZN08_331579KZN08_331579KF736688None   I15V, L19I, K20R, M36L, R41K, L63P, H69K, V77I, L89I, I93LC
 KZN09_386249KZN09_386249KF736789None   T12S, I15V, G16E, L19I, M36L, L63T, H69K, T74S, L89M, I93LC
Iweriebor (2012)07B13ZA07B13ZAGU201801None   L19I, M36L, R41K, H69K, L89M, I93LC
 07M17ZA07M17ZAGU201812None   T12S, K14R, I15V, L19I, M36L, N37S, R41K, L63S, G68E, H69K, L89M, I93LC
 07M18ZA07M18ZAGU201813None   T12S, I15V, L19I, E35D, M36L, R41K, L63P, H69K, L89M, I93LC
Luebbert (2012)LEU 010770102359 None   I15IV, G16E, L19T, K20R, M36L, N37S, L63T, H69K, T74S, V77IC
Manak (2012)29_LH0129_LH01JN687651None   T12S, I15V, L19T, K20R, M36L, N37S, R41K, L63P, H69K, L89I, I93LC
 29_LH0229_LH02JN687652None   T12S, I15V, L19T, K20R, M36L, N37S, R41K, L63P, H69K, L89I, I93LC
Nwobegahay (2012)BBCR16ZABBCR16ZAGU177473None   T12S, I15V, L19I, K20R, M36L, N37S, R41K, L63P, H69K, V77I, V82I, L89M, I93LC
 BBCR51ZABBCR51ZAGU177493None   T12L, I15V, L19V, M36L, R41K, D60E, L63P, H69K, I93LC
 MC03ZAMC03ZAGU177503None   T12S, I15V, L19V, M36L, N37S, L63P, H69K, L89M, I93LC
Sinha (2012)AIIMS-24AIIMS-24HQ453366None   T12LS, I15ILV, L19T, M36L, N37S, L63P, H69K, I93LC
 AIIMS-70AIIMS-70HQ453387None   T12S, I15V, L19I, M36L, N37S, R41K, L63P, H69K, K70R, V82I, L89M, I93LC
Alencar (2013)SP2-0033SP2-0033JQ238067None   T12S, I15V, L19I, E35D, M36L, N37K, R41N, L63P, H69K, V82I, L89M, I93LC
Bila (2013)MZ09-009HIV-1KF927177None   I15V, L19I, K20R, M36L, R41K, H69K, I72L, L89M, I93LC
 MZ10-152HIV-1KF927258None   T12S, K14R, I15V, L19I, M36L, N37S, R41K, L63V, H69K, L89M, I93LC
 MZBEI13HIV-1KF927404None   K14N, L19I, M36L, N37K, R41K, Q61D, L63S, H69K, L89M, I93LC
 MZ10-216HIV-1KF927314None   T12S, I15V, L19I, E35D, M36L, R41K, H69K, L89M, I93LC
 MZ10-231HIV-1KF927326None   T12S, I15V, L19I, E35E_AN, M36L, P39S, R41K, L63P, H69K, L89M, I93LC
 MZ09-096HIV-1KF927227None   T12S, I15V, L19I, M36L, R41K, L63P, H69K, K70R, L89LM, I93LC
 MZ10-150HIV-1KF927256None   T12S, I15IV, L19I, K20R, E35DN, M36L, N37S, R41K, L63P, H69K, V77I, G86GE, L89M, I93LC
 MZ10-228HIV-1KF927324None   T12S, I15V, L19I, K20R, M36L, N37NS, R41K, Q61QH, L63PS, H69K, I72T, V77I, L89M, I93LC
 MZ10-179HIV-1KF927284None   T12S, G16E, L19I, M36L, N37S, R41K, L63V, H69K, L89M, I93LC
 MZ09-025HIV-1KF927191None   T12S, K14R, I15V, L19I, M36L, N37S, R41K, L63P, H69K, V82I, L89M, I93LC
 MZ10-188HIV-1KF927289None   T12S, I13IL, I15V, L19I, K20R, L24LV, M36L, L63P, H69K, V77I, L89M, I93L, C95CF, T96TPC
 MZ09-004HIV-1KF927173None   I15V, L19I, M36L, N37S, R41K, L63P, H69K, I93LC
 MZ10-177HIV-1KF927282None   T12S, I15V, L19V, M36L, R41K, D60E, L63V, H69K, L89M, I93LC
 MZ10-260_XAHIV-1KF927349None   T12S, I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
 MZ09-081HIV-1KF927219None   T12S, I15V, L19I, M36L, R41K, L63V, H69K, V82I, L89M, I93LC
 MZ09-003HIV-1KF927172None   I15V, G16A, L19V, M36L, L63S, H69K, L89M, I93LC
 MZ10-214HIV-1KF927313None   I15V, L19T, T26TS, M36L, N37S, R41K, H69K, L89M, Q92QH, I93LC
 MZ10-162HIV-1KF927267None   T12S, I15V, L19I, M36L, N37Q, R41K, D60E, I62V, L63P, H69K, L89MC
 MZ09-082HIV-1KF927220None   T12S, I15V, L19I, M36L, R41K, L63V, H69K, V82I, L89M, I93LC
Brooks (2013)CAN2013-005CAN13-005KF727701None   T12S, I15V, G16E, L19I, M36L, R41K, L63T, H69K, V82I, I93LC
Chen (2013)11YNHH00811YNHH008JX412328None   I15V, L19I, M36L, N37D, D60E, L63S, I64L, H69K, L89M, I93LC
 11YNHH08911YNHH089JX412352None   T12S, I15V, L19I, E35ED, M36L, N37S, R41RK, D60E, Q61QE, L63P, H69K, L89M, I93LC
Frentz (2013)EHR-41014EHR-41014JX300233None   I15V, L19I, M36L, N37S, R41K, L63T, H69K, I93LC
 EHR-600788EHR-600788JX300539None   I15V, L19V, M36L, R41K, L63AT, H69K, T74S, L89M, I93LC
 EHR-747144EHR-747144JX300813None   I15V, L19I, M36L, N37NS, R41K, L63LV, I66IT, H69K, K70R, L89I, I93LC
 EHR-759709EHR-759709JX300834None   I15V, G16E, L19I, M36L, N37K, R41K, H69K, L89M, I93LC
Hassan (2013)RS09000903RS09000903HQ441648None   I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
Hoffmann (2013)442678442678KJ081326None   I15V, M36L, L63AV, H69K, T74S, L89M, I93LC
Leye (2013)SN.MS011SN.MS011FM210687None   G16E, L19I, M36L, N37S, L63M, H69K, I72V, L89M, I93LC
 SN.MS522SN.MS522FM210725None   I15V, G16E, L19I, M36L, N37S, R41K, L63A, H69K, I72V, I93LC
Li (2013)hnr11hnr11KC987972None   T12S, K14R, I15V, L19I, M36L, N37D, R41K, L63S, H69K, A71V, I93LC
Mulu (2013)ETH-G-5740ETH-G-5740KF026180None   I15V, E35D, M36L, R41K, K43R, Q61N, L63A, H69K, T74A, L89M, I93LC
 ETH-G-5689ETH-G-5689KF026158None   I15V, L19I, M36L, R41K, R57S, L63S, H69K, L89M, I93LC
 ETH-G-5568ETH-G-5568KF026119None   M36L, R41K, L63P, H69K, L89M, I93LC
Telan (2013)1203174412031744AB747504None   L10V, I15V, M36L, R41K, L63T, H69K, T74A, L89M, I93LC
Van Zyl (2013)160499KC424097None   T12S, I15V, G16E, L19I, K20R, M36L, R41K, D60E, L63H, H69K, K70R, L89I, I93LC
 17833080KC423961None   I15V, L19T, K20R, M36L, R41K, Q61E, H69K, I93LC
 7471188KC422949None   I15V, L19T, K20R, M36L, N37C, R41K, L63P, H69K, V77I, L89M, I93LC
 5191747KC423375None   T12S, I15V, G16E, L19I, M36L, N37S, R41K, I62V, L63V, H69K, K70KR, I72IV, T74S, L89M, I93LC
 3321105KC422881None   T12S, I15V, L19T, K20R, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 7162043KC423583None   I15V, L19I, K20R, E35D, M36L, R41K, L63P, H69K, V77I, L89M, I93LC
 10181453KC423154None   T12S, I15V, L19I, K20R, M36L, N37S, R41K, L63P, H69K, V77VI, L89M, I93LC
 13221102KC422878None   T12S, I15V, L19I, E35D, M36L, R41K, L63P, H69K, V82I, L89M, I93L, L97IC
 12011539KC423213None   T12S, I15V, L19I, M36L, L63P, H69K, V82I, L89M, I93LC
 5301477KC423169None   M36L, N37A, L63P, H69K, I72V, I93LC
 13141036KC422823None   I15V, L19I, M36L, N37S, L63P, H69K, K70KQ, L89M, I93LC
 247355KC424005None   K14R, I15V, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93LC
 964977KC424410None   T12S, I15V, L19V, E35D, M36L, N37D, D60E, Q61E, H69K, V82I, L89M, I93LC
 109380KC424025None   L10I, L19I, M36L, R41K, L63P, H69K, I93LC
 935367KC424015None   T12S, I15V, L19V, E35EK, M36L, R41K, D60E, L63P, H69K, I93LC
 15093093KC423965None   T12S, I15V, Q18K, L19I, K20R, M36L, N37E, K43I, D60E, L63P, H69K, V77VI, V82I, L89M, I93LC
 13811244KC422994None   T12A, I15IV, L19I, M36L, R41K, I62V, L63PS, I64M, H69K, L89M, I93LC
 7371010KC422802None   T12S, I15V, G16E, L19I, M36L, R41K, L63C, H69K, V82I, L89M, I93LC
 6622029KC423573None   T12S, I15V, L19R, M36L, R41N, L63P, H69K, L89M, I93LC
 4531153KC422918None   T12E, I15V, L19I, E21EG, M36L, N37S, R41K, L63P, H69K, I93LC
 145921KC424365None   T12S, I15V, L19T, M36L, N37S, P39PS, L63P, H69K, L89M, I93LC
  1278KC423025None   T12S, L19T, M36L, N37S, R57K, L63P, H69K, L89M, I93LC
 150344KC423996None   T12S, I15V, G16A, L19I, M36L, N37S, H69K, L89M, I93LC
 71362KC424011None   I15V, L19I, M36L, N37S, R41K, H69K, L89M, I93LC
 96217KC423664None   L19I, M36L, R41K, D60E, Q61G, H69K, L89M, I93LC
Bartolo (2014)09AOHDP11109AOHDP111KF853759None   I15V, L19V, M36L, R41K, L63T, I64M, H69K, L89M, I93LC
 09AOHDP24209AOHDP242KF853818None   T12S, K14KR, I15V, L19V, M36L, R41K, L63S, H69K, V77VI, L89M, I93LC
 09AOHDP17609AOHDP176KF853782None   T12S, I15V, G16E, L19I, M36L, L63V, H69K, L89M, I93LC
Lee (2014)MBA1038MBA1038KJ906739None   T12S, I15V, L19Q, M36L, G49GR, L63P, H69K, L89LM, I93LC