<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Protease Inhibitors

Subtype C
Gene PR
Mutation I13V
Rx PI-naive
IncludeMixtures No
References 110
Patients 390
Isolates 393
 
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Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# PIs WksPIMajorDRMs PIMinorDRMs OtherMutSubtype
Gao (1998)92RW009_0692RW009_06U88823None   I13V, K20R, M36I, R41K, R57K, H69K, P81S, L89MC
Gonzales (2001)CA5625CA13968AY032091None   T12S, I13V, K14T, I15V, L19V, K20R, M36I, N37NS, R41K, L63V, H69K, I72V, V82I, L89M, I93LC
Hoelscher (2001)97TZ0897TZ08AF361878None   T12S, I13V, I15V, L19V, M36I, R41K, L63S, H69K, L89M, I93LC
 97TZ0797TZ07AF361877None   I13V, M36I, R41K, L63Q, I64VC
Dowling (2002)KER2010KER2010AF457054None   I13V, L19I, K20R, M36I, R41K, I62V, L63I, H69K, A71T, L89I, I93LC
Handema (2002)H00ZM4721H00ZM4721AB081151None   T12S, I13V, I15V, L19I, M36V, N37S, R41K, H69K, L89MC
Hierholzer (2002)SU231SU231AY102498None   I13V, I15V, M36I, R41K, L63PT, H69K, K70Q, L89M, I93LC
Kantor (2002)TCDD-19TCDD-19_1AY090848None   I13V, I15IV, L19I, M36I, R41K, H69K, T74S, L89M, I93LC
Novitsky (2002)00BW389100BW3891AF443113None   I13V, I15V, L19I, M36I, N37S, R41K, L63A, H69K, L89M, I93LC
Papathanasopoulos (2002)99ZACM499ZACM4AF411964None   I13V, K20I, E35D, M36I, N37S, R41K, I64M, K70R, L89MC
Brindeiro (2003)BRP2115BRP2115AY213393None   I13V, M36I, N37K, R41N, H69K, L89M, I93LC
 BRP2096BRP2096AY213358None   I13V, I15V, L19I, M36I, N37K, R41N, H69K, L89MC
 BRP2121BRP2121AY213405None   L10I, I13V, I15V, M36I, N37K, R41N, H69K, L89M, I93LC
 BRC1525BRC1525AY213520None   I13V, I15V, M36T, N37K, R41N, H69K, L89I, I93LC
 BRC1563BRC1563AY213550None   L10V, I13V, K14R, I15V, K20R, M36I, N37K, R41I, L63V, I64V, H69K, I93LC
Hanna (2003)HG030HG030AY049667None   I13V, K20R, M36I, R41K, L63P, H69K, L89M, I93LC
Jorgensen (2003)JLB_Pat23HIM419449AJ419449None   T12S, I13V, I15V, L19IM, M36I, R41K, I64IV, H69K, V82I, L89I, I93LC
Maljkovic (2003)MI_Pat2499SE17040AY165209None   I13V, K14R, I15V, L19V, K20R, M36I, R41K, D60E, Q61D, I62V, G68E, H69K, L89M, I93LC
 MI_Pat5100SE18651AY165225None   I13V, K20R, M36I, R41K, H69K, L89M, I93LC
Pollakis (2003)10AM96146GPAY242586None   T12S, I13V, I15V, M36I, R41K, I64M, H69K, V77L, G78Y, L89M, I93LC
 1GO96009GPAY242604None   T12S, I13V, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
  GO96009GPAH012555None   Q2K, I3Q, T4L, T12S, I13V, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
Soares (2003)BRP2039BRP2039AF527230None   L10I, I13V, I15V, M36I, N37K, R41N, D60E, H69K, L89M, I93LC
 BRP2057BRP2057AF527264None   I13V, I15V, G16E, M36I, N37K, R41N, H69K, K70R, L89M, I93LC
Arroyo (2004)01TZA20701TZA207AY253307None   T12S, I13V, I15V, K20R, M36I, R41K, L63T, H69K, K70R, L89M, I93LC
 01TZA35501TZA355AY253315None   I13V, E35D, M36I, R41K, K45R, R57K, L63S, H69K, L89MC
 01TZA30601TZA306AY253318None   I13V, K14R, I15V, G16E, E35D, M36I, R41K, K43R, K45R, R57K, L63S, H69K, L89MC
Deshpande (2004)in34in34AY515754None   T12S, I13V, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
 in37in37AY515756None   T12S, I13V, K14R, L19I, L33V, N37S, R41K, L63P, H69K, V82I, L89I, I93LC
 in115in115AY515825None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
 in119in119AY515829None   I13V, K14R, I15V, L19V, N37S, R41K, L63P, H69K, A71T, L89M, C95CYC
Eshleman (2004)ESH_Pat37ESH406AY435268None   L10V, I13V, E35D, M36I, R41K, R57K, C67Y, H69K, L89MC
Montes (2004)MB_patVID99_VID711AJ578177None   I13V, K14R, I15V, M36I, R41K, L63P, H69K, L89I, I93LC
Snoeck (2004)BE64BE64AY900951None   I13V, K14R, G16E, K20R, E35D, M36I, R41K, R57K, H69K, L89MC
 BE70BE70AY900956None   I13V, I15V, L19I, M36L, N37S, R41K, L63V, H69K, T74S, L89M, I93LC
Balakrishnan (2005)YRG11YRG11AY787497None   I13V, I15V, L19I, K20R, M36L, N37C, R41K, L63P, H69K, L89M, I93LC
 YRG12YRG12AY787498None   T12P, I13V, I15V, L19I, E35D, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 YRG21YRG21AY787507None   I13V, K14R, I15V, L19I, M36T, R41K, L63P, H69K, L89M, I93LC
 YRG40YRG40AY787526None   T12S, I13V, K14R, I15V, L19I, E35D, M36I, R41K, L63P, H69K, I93LC
 YRG41YRG41AY787527None   I13V, I15V, L19I, E21K, T26K, M36L, N37S, R41K, L63P, H69K, L89LM, I93LC
 YRG25YRG25AY787511None   I13V, I15V, L19I, M36I, N37S, R41K, L63P, C67CY, H69K, K70KR, L89M, I93LC
 YRG27YRG27AY787513None   T12S, I13V, I15V, L19I, M36I, N37S, R41K, L63P, H69K, L89M, I93LC
 YRG19YRG19AY787505None   I13V, I15V, L19I, M36I, N37S, R41K, L63P, C67CY, H69K, K70R, L89M, I93LC
Bellocchi (2005)751MT000751GU199530None   T12S, I13V, I15IV, G16GE, L19I, M36I, R41K, H69KR, I72IM, L89M, I93LC
 096MC096GU199538None   I13V, I15V, L19I, K20R, M36I, R41K, L63P, H69K, V77I, L89M, I93LC
 133MC133GU199570None   T12S, I13V, G16E, L19I, M36I, D60E, L63P, H69K, L89M, I93LC
Bussmann (2005)01BW3374N01BW3374NAY829316None   T12S, I13V, I15V, L19T, K20R, M36I, N37S, R41K, H69K, L89M, I93LC
Eshleman (2005)ESH3097ESH3097AY756842None   I13V, G16E, L19I, K20R, M36I, R41K, H69K, T74S, V77I, L89M, I93LC
Grossman (2005)2104221042PR243 None   I13V, I15V, M36I, R41K, L63I, I64V, H69K, I72IV, L89M, I93LC
 2411024110PR335 None   I13V, I15V, M36I, R41K, L63S, I64V, H69K, L89M, I93LC
 2750327503PR449 None   L10I, I13V, M36I, R41K, D60E, L63T, H69K, L89MC
Non-B Workgroup (2005)BR1008BR1008AY900904None   L10I, I13V, I15V, M36I, N37K, R41N, D60E, H69K, L89M, I93LC
 BR1014BR1014AY900908None   I13V, I15V, G16E, M36I, N37K, R41N, H69K, K70R, L89M, I93LC
 UK4480UK4480AY901224None   I13V, M36L, N37E, R41K, L63LP, H69K, K70R, L89IMC
 TK3036TK3036 None   I13V, K14R, E35D, M36I, N37E, R41K, R57K, H69K, K70R, L89MC
Weber (2005)F95995F95995AY677443None   T12S, I13V, I15V, L19I, M36L, N37S, R41K, L63V, H69K, T74S, L89M, I93LC
Bessong (2006)POB_02TS19ZA02TS19ZADQ222269None   I13V, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89I, I93LC
Jayaraman (2006)1-00-0027rc1-00-0027rc None   I13V, K20R, M36I, R41K, I62V, L63P, H69K, K70KT, L89M, I93LC
 2-00-05332-00-0533 None   T12S, I13V, I15V, L19I, M36I, R41K, L63V, I64M, H69K, L89M, I93LC
Parreira (2006)PG176PG176AM071427None   T12S, I13V, I15V, L19I, E35D, M36I, R41K, D60E, Q61E, H69K, L89M, I93LC
 PG17PG17AM071439None   T12S, I13V, I15V, L19I, M36L, N37C, R41K, L63T, H69K, L89MC
Razafindratsimandresy (2006)RR_MAD-GP017MAD-GP017DQ345007None   T12S, I13V, I15V, L19I, M36I, R41K, L63P, H69K, T74S, L89M, I93LC
Rodrigues (2006)BR04RS137BR04RS137DQ070604None   I13V, K14R, I15V, K20R, M36I, N37K, R41N, H69K, L89MC
 BR04RS141BR04RS141DQ070558None   I13V, I15V, M36I, N37K, R41N, R57K, L63P, I64L, H69K, L89MC
 BR04RS209BR04RS209DQ070548None   T12A, I13V, K14R, I15V, L19I, M36I, N37K, R41N, L63P, H69K, L89MC
 BR04RS370BR04RS370DQ070542None   I13V, I15V, M36I, N37K, R41N, D60E, H69K, L89MC
Rodriguez (2006)1579A1579ADQ083238None   I13V, E35D, M36I, N37D, P39S, R41K, R57K, I62V, H69K, K70R, L89MC
Rousseau (2006)Pt2703PS050MB1DQ369980None   T12S, I13V, I15V, L19V, M36I, R41K, L63T, I64M, H69K, L89M, I93LC
 Pt6003PS113MB2DQ396365None   T12S, I13V, I15V, L19I, E35D, M36I, R41K, R57K, L63V, H69K, T74S, L89M, I93LC
 Pt6703PS125MB1DQ396390None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, H69K, T74S, L89M, I93LC
 Pt7103PS131MB1DQ396380None   I13V, G16E, L19I, M36I, R41K, D60E, H69K, L89M, I93LC
 Pt8903SK029B2AY772691None   L10M, I13V, K14R, L19I, M36I, R41K, I62V, L63V, H69K, T74A, L89M, I93LC
 Pt21404SK191B1DQ369993None   I13V, K14N, L19I, M36I, L63V, H69K, T74S, L89M, I93L, C95RC
 Pt22605SK243B1DQ396372None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, H69K, L89M, I93LC
Santos (2006)110PA110PAEF091932None   I13V, K20R, M36I, N37E, R41N, D60N, L63P, H69K, L89M, I93LC
 097097PR_RTAY275757None   L10I, T12P, I13V, K14R, I15V, K20R, M36I, N37K, R41N, H69K, L89M, I93LC
 PA110PA110AY275765None   I13V, K20R, M36I, N37E, R41N, D60N, L63P, H69K, L89M, I93LC
 C020PRC020PRDQ191023None   I13V, I15V, K20R, M36I, N37K, R41N, R57K, H69K, L89M, I93LC
 PA204PA204DQ343983None   I13V, I15V, M36I, N37K, R41N, H69K, L89M, I93LC
Vidal (2006)NV_LBS04802.LBS048AM041002None   I13V, K14I, I15V, L19Q, K20R, M36I, R41K, D60E, Q61H, L63S, H69K, L89M, I93LC
 NV_LBTB04602.LBTB046AM041004None   I13V, K14R, I15V, K20R, M36I, R41K, L63V, H69K, L89M, I93LC
Church (2007)30973097EF602595None   I13V, G16E, L19I, K20R, M36I, R41K, H69K, T74S, V77I, L89M, I93LC
Dilernia (2007)F007F007EF120336None   T4TI, L5LF, T12TS, I13V, I15V, G16A, N37K, R41N, H69K, T74S, L89M, I93LC
Kassu (2007)ETH-G-035G-035AB285768None   T12S, I13V, I15V, L19I, M36I, R41K, I64M, H69K, L89M, I93LC
 ETH-G-046G-046AB285772None   I13V, I15IV, G16E, M36I, R41K, L63H, H69K, I93LC
 ETH-G-090G-090AB285792None   T12A, I13V, K20R, M36I, R41K, Q61E, L63AV, H69K, L89M, I93LC
 ETH-G-219G-219AB285826None   I13V, I15V, G16GE, M36I, R41K, I64IV, H69K, L89M, I93LC
Martinson (2007)CHB188MCHB188MEU152457None   T12S, I13V, I15V, G16E, L19I, E35EK, M36I, R41K, D60E, H69K, L89I, I93L, L97IC
McGrath (2007)7DMG_7 None   L10I, I13V, G16GE, L19T, K20R, M36I, R41K, L63AITV, I64IM, E65D, H69K, L89M, I93LC
Novitsky (2007)18981898_4401EF026226None   L10I, T12S, I13V, I15V, L19I, M36I, R41K, I62V, L63V, H69K, A71T, L89M, I93LC
Soundararajan (2007)TRC8TRC8EF491930None   T12S, I13V, I15V, L19I, K20R, M36I, G40G*, R41K, L63S, H69K, I72T, I93LC
 TRC28TRC28EF491940None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69K, L89MC
 TRC41TRC41EF491943None   I13V, K14R, L19I, M36I, R41K, L63P, H69K, V82I, L89M, I93LC
 TRC50TRC50EF491949None   I13V, K14R, E35D, M36I, N37D, R41K, R57K, H69K, L89MC
 TRC10TRC10EF491931None   I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 TRC36TRC36EF491942None  V11IT12S, I13V, L19I, K20R, M36I, N37D, R57K, L63P, H69K, K70R, V82I, L89IC
Vidal (2007)U012602BU.U0126AM260220None   I13V, K20R, M36I, N37K, R41N, L63P, H69K, L89M, I93LC
 U213202BU.U2132AM260236None   T12P, I13V, I15V, L19V, K20R, M36I, N37K, R41N, H69K, L89M, I93LC
 B105402BU.B1054AM260264None   T12S, I13V, I15V, L19I, K20R, M36I, N37K, R41N, H69K, L89M, I93LC
Arora (2008)27PI-27 None   T12S, I13V, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
 50PI-50 None   I13V, I15V, L19I, M36T, R41K, L63P, H69K, L89M, I93LC
Ferreira (2008)428BR05PR428EU340713None   T12P, I13V, K20R, M36I, N37K, R41N, L63P, H69K, L89M, I93LC
Jacobs (2008)17751775EF602215None   T12S, I13V, I15V, L19I, M36I, N37S, R41K, L63V, I64M, H69K, T74S, L89M, I93LC
 17961796EF602231None   I13V, L19I, E35D, M36I, R41K, H69K, T74S, L89M, I93LC
 16951695EF602289None   I13V, K14R, I15V, L19I, E35E_T, M36V, P39S, R41K, H69K, L89M, I93LC
 18111811EF602296None   T12S, I13V, I15V, G16E, L19I, E35D, M36I, R41K, D60E, H69K, L89M, I93LC
Kamoto (2008)MW16MW16JQ617139None   I13V, I15V, L19I, M36I, R41K, H69K, L89M, I93LC
 MW59MW59JQ617172None   I13V, I15V, L19I, M36I, R41K, D60E, L63P, C67Y, H69K, L89M, I93LC
Lahuerta (2008)P348439P348439_04EF407729None   I13V, I15V, L19I, E35D, M36I, N37D, R41K, K45R, D60E, L63P, C67S, H69K, L89M, I93LC
Lall (2008)G45G45-AFMC33EU447778None   T12S, I13V, I15V, L19T, L33S, M36I, R41N, L63P, H69K, K70R, L89MC
Marconi (2008)ICH28ICH028EU308018None   T12S, I13V, I15V, L19I, M36I, N37S, R41K, L63V, H69K, T74S, L89M, I93LC
 SW027sw027EU308040None   I13V, I15V, L19I, M36I, R41K, L63A, I64M, H69K, V82VI, L89M, I93LC
Matthews (2008)PS050PS050FJ199631None   T12S, I13V, I15V, G16E, L19I, M36I, R41K, L63T, I64M, H69K, L89M, I93LC
 PS125PS125FJ199697None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, H69K, T74S, L89M, I93LC
 PS131PS131FJ199702None   I13V, G16E, L19I, M36I, R41K, D60E, H69K, L89M, I93LC
 SK029SK029FJ199858None   L10M, I13V, K14R, L19I, M36I, R41K, I62V, L63V, H69K, T74A, L89M, I93LC
 SK191SK191FJ199956None   I13V, K14N, L19I, M36I, L63V, H69K, T74S, L89M, I93L, C95RC
 SK243SK243FJ199988None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, H69K, L89M, I93LC
Nyombi (2008)TBK038TBK038EU251737None   I13V, K20R, M36I, R41K, H69K, L89MC
 TBK073TBK073EU251760None   I13V, I15V, K20R, M36I, N37K, R41N, H69K, V82I, L89M, I93LC
 TMS009TMS009EU251790None   L10V, I13V, I15V, G16E, L19Q, K20R, M36I, L63N, H69K, L89M, I93LC
 TMS020TMS020EU251798None   T12S, I13V, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 TMS118TMS118EU251818None   L5F, I13V, K14R, G16E, E35D, M36I, R41K, K45R, H69K, L89MC
 TMS208TMS208EU251845None   T12S, I13V, I15V, L19I, M36I, N37K, R41N, H69K, T74S, L89M, I93LC
 TMS347TMS347EU251880None   I13V, G16E, M36I, P39T, R41K, D60E, L63P, H69K, L89M, I93LC
 TMS348TMS348EU251881None   T12P, I13V, I15V, L19I, N37K, R41I, D60E, L63P, H69K, L89M, I93LC
Aghokeng (2009)CYV046CYV046GU191580None   I13V, K14R, K20I, M36I, R41K, C67E, H69K, K70R, V82I, L89MC
 CYN194CYN194GU191586None   I13V, E35N, M36I, N37D, R41K, K43R, L63P, H69K, L89MC
 CDB0014CDB0014GU191623None   I13V, L19P, K20I, M36I, R41K, H69K, L89MC
 CDG0338CDG0338GU191633None   I13V, K14R, G16E, K20I, E35D, M36I, R41K, H69K, K70KR, L89MC
Ayouba (2009)RES631RES631PRGQ351722None   I13V, I15V, K20I, D25DN, E35N, M36I, R41K, I64L, H69K, L89MC
Bartolo (2009)HAB8001AOHAB80EU068214None   T12S, I13V, I15V, G16E, L19I, M36I, N37S, R41K, L63V, H69K, L89M, I93LC
 HJM6401AOHJM64EU068259None   T12S, I13V, I15V, L19I, E35D, M36I, R41K, L63V, H69K, T74S, L89M, I93LC
 SNS5501AOSNS55EU068309None   T12S, I13V, I15V, L19I, E35D, M36I, R41K, L63V, H69K, T74S, L89M, I93LC
Eshleman (2009)A09917B607-156882FJ389056None   I13V, K20R, M36I, N37K, R41N, L63T, H69K, L89I, I93LC
Hawkins (2009)R347ZZR347FJ931374None   I13V, I15V, L19IV, K20R, M36I, R41K, L63Q, I64L, H69K, L89M, I93LC
Hosseinipour (2009)94059405GQ228242None   T12S, I13V, I15V, L19I, K20R, M36I, Q61E, L63S, H69K, L89M, I93LC
 94439443GQ228248None  L33LFI13V, L19T, K20R, M36I, R41K, L63V, H69K, V82VI, L89M, I93LC
Iqbal (2009)100021100021EU449520None   L5LI, T12S, I13V, L19I, R41K, L63P, I64M, H69K, L89M, I93LC
 100294100294EU449554None   T12S, I13V, L19I, M36V, R41K, L63PS, H69K, L89MC
Kandathil (2009)cd07_005cd07_005EU030417None   T12P, I13V, I15V, L19I, M36I, N37T, R41K, L63P, H69K, L89M, I93LC
 CD06_503CD06_503EU106117None   T12S, I13V, Q18X, L19I, K20R, M36I, R41K, L63P, H69K, L89M, I93LC
 VL05_173VL05_173EU110066None   T12P, I13V, I15V, G16E, Q18X, L19I, M36I, R41K, L63H, H69K, L89M, I93LC
 VL07_265VL07_265EU683756None   I13V, I15V, L19I, M36I, N37S, R41K, L63P, H69K, I93LC
 CD06_419CD06_419EU683767None   I13V, L19T, K20R, M36I, K43R, Q61E, L63P, H69K, I93LC
 VL07_091VL07_091EU683777None   I13V, I15V, L19I, K20R, M36I, R41K, H69K, V82I, L89M, I93LC
Kousiappa (2009)CY073CY073EU673391None   T12S, I13V, I15V, L19I, M36I, R41K, K45R, D60E, Q61E, L63P, H69K, L89M, I93LC
Rajesh (2009)N28TRCNPR28FJ595391None   T12S, I13V, K14R, I15V, L19I, M36I, N37D, R41K, D60DE, L63P, I64IV, H69K, I93LC
 N7TRCNPR7FJ595370None   L10I, T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63A, H69K, L89MC
 N17TRCNPR17FJ595380None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63A, H69K, L89MC
 N65TRCNPR65FJ595428None   T12S, I13V, K14R, I15V, L19I, L24F, M36I, N37D, R41K, D60DE, L63P, I64IV, H69K, I93LC
 N67TRCNPR67FJ595430None   L10LI, T12S, I13V, K14KR, I15V, L19I, M36I, R41K, D60E, L63P, H69K, P79S, L89M, I93LC
 N68TRCNPR68FJ595431None   T12S, I13V, I15V, L19I, M36IV, R41K, D60E, L63T, I64M, H69K, L89M, I93LC
Vercauteren (2009)pt2146328131992GQ398878None   I13V, I15V, M36I, H69K, L89M, I93LC
 pt17702710515734GQ399254None   I13V, I15V, G16E, L19T, K20R, M36I, N37D, L63I, H69K, L89M, I93LC
 pt15244124085235GQ399500None   T12TA, I13V, K14R, I15V, K20T, M36I, N37ND, R41K, H69K, V82I, L89M, I93LC
 pt10317003794670GQ399993None   I13V, K14R, I15V, G16E, M36I, N37S, R41K, H69K, L89M, I93LC
 pt208pfvo5PpoMpGQ400816None   L10V, I13V, I15V, G16E, K20R, M36I, R41K, L63T, I64IL, H69K, I93LC
 pt44xS9new0jWpGQ400980None   I13V, I15V, L19I, K20R, M36I, N37NS, P39PL, R41K, I62V, L63T, E65D, H69K, L89M, I93LC
 pt31YgYVEmdcb2GQ400993None   T12P, I13V, I15V, M36I, N37K, R41N, K45R, D60E, L63P, G68E, H69K, I72V, L89I, I93LC
Wallis (2009)GT00231586GT00231586 None   I13V, L19T, M36I, R41K, D60E, L63LP, H69K, V82I, L89M, I93LC
 TJC2377938TJC2377938 None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 GT00272022GT00272022 None   I13V, K14R, I15V, L19I, K20R, M36I, N37D, R41K, L63LP, H69K, V77I, L89M, I93LC
 22816722281672 None   L10LI, I13V, L19V, M36I, R41K, L63C, I64M, H69K, L89M, I93LC
 TJC2385322TJC2385322 None   T12P, I13V, I15V, L19I, E35D, M36I, R41K, Q58H, Y59M, D60K, Q61E, L63P, H69K, V82I, L89M, I93LC
 TJC2473909TJC2473909 None   T12S, I13V, I15V, L19I, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93LC
 TJC2367640TJC2367640 None   I13V, I15V, L19I, K20R, M36I, R41K, H69K, I93LC
 TJC2378119TJC2378119 None   L10M, I13V, L19V, M36I, R41K, L63S, H69K, I72E, L89M, I93LC
Chaturbhuj (2010)1-0081-008FJ878939None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69K, I72IM, L89M, I93LC
 2-0232-023FJ878969None   T12S, I13V, K14R, G16GE, L19I, K20I, M36I, R41K, D60E, L63PS, H69K, K70R, L89M, I93LC
Gonzalez (2010)770770_M00mGQ427113None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
 KLesa3KLesa3GQ433821None   T12S, I13V, I15V, G16E, L19V, K20R, M36I, P39Q, R41K, L63T, H69R, I72V, T74S, L89M, I93LC
 LUC5LUC5GQ433847None   I13V, I15V, K20R, M36I, N37D, R41K, D60E, Q61E, H69K, L89M, I93LC
Rodrigues (2010)351_07BR07SC351GQ401331None   I13V, I15V, K20R, M36I, N37K, R41N, I62V, L63V, H69K, T74S, L89M, I93LC
Wright (2010)243SK243HM593248None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, H69K, L89M, I93LC
 342SK342HM593347None   T12S, I13V, K14T, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 440SK440HM593450None   I13V, I15V, L19I, M36I, N37S, R41K, H69K, L89M, I93LC
Yang (2010)20106934762010693476JQ616901None   L10V, I13V, L19V, M36L, R41K, H69K, L89MC
Yebra (2010)40134707SP401347FJ481656None   I13V, I15V, N37K, R41N, L63V, H69K, T74S, L89M, I93LC
Bussmann (2011)B0739B0739JQ617019None   I13V, L19I, R41K, H69K, T74S, L89MC
Carvalho (2011)O32-43O32-43GU214076None   I13V, K14R, I15V, G16E, M36I, N37K, R41N, L63R, H69K, L89M, I93LC
de Medeiros (2011)Pat038RS011JF487867None   I13V, K14R, I15V, M36I, N37K, R41N, R57K, L63P, H69K, L89M, L97V, N98KC
 Pat039RS010JF487868None   I13V, L33V, N37K, R41N, H69K, L89MC
 Pat062RS033JF487891None  D30VT12K, I13V, I15V, L19I, N37K, R41N, L63P, H69K, L89M, I93LC
Deshpande (2011)Pat006in1032JF414464None   T12S, I13V, G16E, L19I, P39S, R41K, G49E, L63P, H69K, V77I, L89MC
Ferreira (2011)BRMT3086BRMT3086HQ638743None   L10M, T12S, I13V, I15V, L19I, M36I, N37K, R41N, Q61E, I62V, L63V, E65D, H69K, T74S, L89M, I93LC
Graf (2011)SC11SC11JF773990None   I13V, L19I, K20R, M36I, N37K, R41N, H69K, L89I, I93LC
 SC47SC47JF774012None   I13V, I15V, N37K, R41N, H69K, T74S, L89M, I93LC
 SC96SC96JF774035None   T12A, I13V, I15V, G16E, M36I, N37K, R41N, L63H, H69K, L89M, I93LC
 SC99SC99JF774037None   T12S, I13V, L19V, K20R, L33V, M36I, N37K, R41N, L63P, H69K, L89M, I93LC
 SC138SC138JF774058None   I13V, I15V, K20R, M36I, N37K, R41N, H69K, L89I, I93LC
Hamers (2011)300029CP076300029HM119624None   I13V, I15V, L19I, L63P, G68E, H69KR, I72IV, V77I, L89M, I93LC
 300044CP076300044HM119637None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, I62V, I64L, H69K, T74S, L89M, I93LC
 300122CP076300122HM119699None   T12P, I13V, I15V, L19T, K20R, M36I, R41K, D60DE, L63AT, E65ED, H69K, L89M, I93LC
 300148CP076300148HM119724None   I13V, L19I, K20R, M36I, N37S, R41K, L63A, H69K, L89M, I93LC
 300172CP076300172HM119745None   T12S, I13V, I15V, L19I, M36I, R41K, D60E, H69K, L89M, I93LC
 300203CP076300203HM119773None   I13V, L19I, M36I, N37D, L63AV, H69K, T74S, L89M, I93LC
 300209CP076300209HM119778None   I13V, I15V, L19V, M36I, R41K, H69K, L89MC
 300245CP076300245HM119803None   I13V, L19I, M36I, N37S, R41K, H69K, L89MC
 300283CP076300283HM119817None   I13V, L19I, M36I, D60E, L63P, H69K, L89M, I93LC
 300420CP076300420HM119844None   I13V, K14R, I15V, K20R, M36I, R41K, Q61N, G68E, H69K, L89M, I93LC
 300432CP076300432HM119856None   T12S, I13V, I15V, L19I, M36I, R41K, Q61H, L63S, H69K, L89M, I93LC
 300437CP076300437HM119859None   I13V, I15V, G16A, L19I, E35D, N37S, R41K, H69K, L89M, I93LC
 300442CP076300442HM119864None   T12S, I13V, I15V, L19I, M36I, R41K, L63V, H69K, T74S, L89M, I93LC
 300481CP076300481HM119900None   W6R, T12S, I13V, I15L, L19I, E35D, M36L, N37K, L63V, H69K, T74S, L89M, I93LC
 300491CP076300491HM119910None   L5X, I13V, I15V, L19I, M36I, N37S, R41K, L63T, H69K, L89M, I93LC
 300494CP076300494HM119913None   I13V, I15V, L19I, M36I, R41K, K43R, L63LIPT, H69K, I72IV, L89M, I93LC
 300498CP076300498HM119917None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63V, H69K, I72IV, L89M, I93LC
 300500CP076300500HM119919None   T12S, I13V, L19I, M36I, R41K, L63P, H69K, T74S, L89M, I93LC
 300503CP076300503HM119920None   I13V, L19IV, K20R, M36I, R41K, Q61N, L63P, H69K, L89M, I93LC
 300508CP076300508HM119925None   I13V, K14R, L19I, M36I, R41K, H69K, L89M, I93LC
 300543CP076300543HM119956None   I13V, L19T, K20R, M36I, R41K, Q61E, L63P, H69K, I93LC
 300554CP076300554HM119964None   I13V, I15V, K20R, M36I, P39Q, R41K, Q61D, L63T, H69K, I72V, T74S, L89M, I93LC
 300611CP076300611HM120012None   T12S, I13V, I15V, L19I, M36I, N37D, L63P, H69K, T74S, L89M, I93LC
 300631CP076300631HM120028None   I13V, L19I, K20R, M36I, R41K, H69K, L89M, I93LC
 300640CP076300640HM120037None  L33II13V, M36I, P39S, R41K, D60E, L63A, H69K, V82I, L89MC
 300645CP076300645HM120041None   I13V, I15V, K20R, M36I, R41K, L63T, H69K, L89M, I93LC
 300651CP076300651HM120045None   L10V, I13V, I15V, K20R, M36I, R41K, Q61E, I64L, H69K, L89M, I93LC
 302426CP076302426HM120120None   I13V, I15V, L19I, M36I, N37S, R41K, L63S, H69K, I72V, T74S, L89M, I93LC
 303962CP076303962HM120147None   T12S, I13V, I15V, L19T, K20R, M36I, N37X, P39PS, R41RK, L63T, H69K, K70KT, L89M, I93LC
 CP076301536CP076301536HQ993580None   I13V, K14R, I15V, L19I, M36I, R41K, I62IV, H69K, T74TS, L89M, I93LC
 CP076303192CP076303192HQ994204None   L10V, T12S, I13V, K14N, L19I, K20R, M36I, R41K, D60E, L63AITV, H69K, L89IM, I93LC
 CP076303284CP076303284HQ994273None   I13V, G16E, L19I, K20R, M36I, N37D, L63A, H69K, I93LC
 CP076305108CP076305108HQ994332None   T12S, I13V, I15V, L19I, K20R, M36I, N37D, R41K, L63H, H69K, L89M, I93LC
 CP076305115CP076305115HQ994338None   T12S, I13V, I15V, L19I, K20R, M36I, N37D, R41K, L63H, H69K, L89M, I93LC
 CP076300384CP076300384HQ994391None   T12S, I13V, I15V, L19I, K20R, M36I, N37S, R41K, L63HNPT, H69K, K70KR, L89I, I93LC
 CP076301437CP076301437HQ994412None   I13V, K14N, L19I, K20R, M36I, N37NS, R41K, L63S, H69K, K70KR, L89M, I93LC
 CP076301495CP076301495HQ994449None   T4TP, T12PS, I13V, K14N, I15L, L19I, K20R, M36I, R41K, D60E, Q61E, L63PS, H69K, L89M, I93LC
 CP076302129CP076302129HQ994498None   T12S, I13V, G17D, L19I, K20KR, M36I, R41K, D60E, Q61E, L63LP, H69K, V82I, L89M, I93LC
 CP076301092CP076301092HQ994607None   T12S, I13V, I15V, L19I, M36L, N37S, D60E, L63P, H69K, L89M, I93LC
 CP763A03425CP763A03425HQ994673None   I13V, I15V, G16E, L19I, M36I, R41K, K45R, Y59F, D60E, Q61N, L63S, H69K, L89M, I93LC
 CP763A03642CP763A03642HQ994683None   T12A, I13V, M36I, N37T, R41K, K45R, R57RK, D60E, Q61QDEH, L63P, H69K, L89M, I93LC
 CP763A03646CP763A03646HQ994684None   T12S, I13V, K14T, G16E, L19T, M36I, N37NS, L63V, H69K, I72V, T74S, L89M, I93LC
 CP076300991CP076300991HQ994752None   I13V, K14T, L19T, K20R, M36I, R41K, D60E, L63P, I64L, H69K, L89I, I93LC
 CP076301098CP076301098HQ994781None   I13V, I15V, L19V, M36I, R41K, L63A, H69K, T74S, L89M, I93LC
 CP076302647CP076302647HQ994792None   I13V, I15V, L19I, M36I, R41K, H69K, T74S, L89M, I93LC
 CP076302699CP076302699HQ994837None   I13V, L19T, K20R, M36I, R41K, I62V, L63P, H69K, T74S, L89M, I93LC
 CP076302721CP076302721HQ994858None   I13V, L19T, K20R, M36I, R41K, L63PS, H69K, L89M, I93LC
 CP076302732CP076302732HQ994868None   I13V, L19T, K20R, M36I, N37D, R41K, D60E, H69K, L89M, I93LC
 CP076300726CP076300726HQ994928None   I13V, I15V, G16E, K20R, M36I, R41K, L63A, H69K, V82VI, I93LC
 CP076300572CP076300572HQ995496None   T12S, I13V, I15IV, L19I, M36I, R41K, L63P, H69K, T74S, L89M, I93LC
Manasa (2011)10050021005002JN665010None   T12S, I13V, G16E, L19V, K20R, M36I, R41K, H69K, L89M, I93LC
 10053651005365JN665022None   I13V, L19I, K20R, M36I, N37T, R41K, H69K, L89M, I93LC
 10093571009357JN665036None   T12A, I13V, L19I, K20R, E35D, M36I, R41K, H69K, T74S, L89M, I93LC
Ndembi (2011)NTCPS710NTCPS710HQ702660None   T12S, I13V, I15V, K20R, M36I, R41K, I62V, L63Q, H69K, I72M, T74S, L89MC
Nwobegahay (2011)BBVCT39ZABBVCT39ZAGU139630None   I13V, I15V, L19I, K20R, E35D, M36I, R41K, D60E, Q61E, H69K, L89M, I93LC
Nwobegahay (2011)08MB69ZA08MB69ZAGU188847None   I3V, L10M, I13V, I15K, G17S, L19I, K20R, M36I, P39Q, L63Q, H69K, L89M, I93LC
 08MB71ZA08MB71ZAGU188848None   T12I, I13V, K14R, L19I, M36I, R41K, L63P, H69K, I93LC
Parboosing (2011)Pat018HRS165HQ844608None   I13V, L19I, R41K, L63V, H69K, T74S, V77I, L89M, I93LC
Santos (2011)J62J62_PR_RTJN010449None   I13V, K14R, I15V, K20R, M36I, N37K, R41N, Q61E, H69K, L89MC
 J96J96_PR_RTJN010467None   I13V, K20R, M36I, N37K, R41N, L63T, H69K, T74S, L89M, I93LC
 J111J111_PRJN010476None   I13V, K20R, N37K, R41N, Q61E, H69K, L89M, I93LC
 J165J165_PR_RTJN010559None   I13V, K14R, I15IV, M36I, N37K, R41N, L63P, H69K, K70R, L89M, I93LC
 J194J194_PRJN010599None   I13V, I15V, L19S, K20R, M36I, N37K, R41N, H69K, L89M, I93LC
 J207J207_PRJN010616None   I13V, K14R, G16E, L19I, M36I, N37K, R41N, H69K, L89I, I93LC
 J210J210_PRJN010620None   I13V, K20R, M36I, N37K, R41N, L63T, H69K, L89M, I93LC
 J211J211_PRJN010622None   I13V, I15V, M36T, N37K, R41N, H69K, L89M, I93LC
 J330J330_PR_RT_CN_RHJN010704None   I13V, K20R, M36I, N37K, R41N, I62V, L63P, H69K, L89M, I93LC
 J335J335_PR_RT_CNJN010712None   L10I, I13V, I15V, E35ED, N37K, R41I, D60E, H69K, T74TA, L89M, I93LC
 J339J339_PRJN010718None   I13V, K20R, M36I, N37K, R41N, H69K, L89M, I93LC
 J358J358_PRJN010743None   I13V, I15V, M36I, N37K, R41N, L63P, I64L, H69K, L89M, I93LC
 J375J375_PRJN010764None   I13V, K14R, I15V, M36I, N37K, R41N, D60E, H69K, I72IM, L89M, I93LC
Thorat (2011)Pat018IN-NARI-HIVDR-5-018HQ166856None   T12S, I13V, K14R, I15V, G16E, L19I, M36I, R41K, D60E, Q61N, L63A, I64L, H69K, L89M, I93LC
 Pat032IN-NARI-HIVDR-5-032HQ166870None   I13V, I15V, M36I, R41K, L63P, H69K, L89M, I93LC
van Zyl (2011)A135A135JN638082None   T12S, I13V, I15V, L19T, K20R, M36I, L63S, H69K, L89M, I93LC
 A79A79JN638224None   T12S, I13V, I15V, L19T, K20R, M36I, Q61E, L63S, H69K, L89M, I93LC
Wright (2011)AS2-0110B2AS2-0110B2HQ696798None   I13V, G16E, L19T, K20R, E35D, M36I, R41I, L63H, H69K, K70R, L89I, I93LC
Zeng (2011)K20K20JF505531None   T12S, I13V, I15V, L19I, M36I, R41K, D60E, L63P, L89M, I93LC
 K18K18JF505530None   I13V, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 K44K44JF505533None   T12S, I13V, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 K66K66JF505538None   I13V, K14R, I15V, L19I, M36I, L63P, H69K, L89M, I93LC
 K22K22JF505595None   I13V, L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 K69K69JF505597None   T12S, I13V, K14N, I15V, L19I, K20R, M36I, R41K, D60E, L63P, H69K, K70R, L89M, Q92H, I93LC
 K73K73JF505601None   I13V, K14R, I15V, L19I, M36I, D60E, L63P, H69K, L89M, I93LC
 K76K76JF505604None   T12S, I13V, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89I, I93LC
Chen (2012)YN09DH0118YN09DH0118JQ658580None   I13V, K14R, G17S, L19I, M36I, N37D, R41K, D60E, L63P, H69K, L89M, I93LC
 YN09DH0128YN09DH0128JQ658587None   I13V, E35D, M36I, R41K, D60E, L63P, H69K, K70R, L89M, I93LC
 YN09DH0170YN09DH0170JQ658626None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 YN10DH0028YN10DH0028JQ658653None   T12S, I13V, K14R, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 YN10DH0036YN10DH0036JQ658660None   T12S, I13V, K14R, I15V, L19I, K20R, M36L, N37S, L63P, H69K, L89M, I93LC
 YN10DH0105YN10DH0105JQ658726None   T12S, I13V, K14KR, I15V, L19I, K20KI, M36I, R41K, L63P, H69K, L89M, I93LVC
 YN10DH0123YN10DH0123JQ658743None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69K, K70R, L89M, I93LC
 YN10DH0141YN10DH0141JQ658760None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69K, K70R, T74S, L89M, I93LC
 YN10DH0148YN10DH0148JQ658767None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69K, K70KR, L89M, I93LC
da Silveira (2012)BRMS47BRMS47JF342298None   L10V, I13V, I15V, L19I, M36T, N37K, R41N, K43R, L63T, H69K, L89I, I93LC
De Gascun (2012)IRL16507IRL16507JN622861None   T12TILS, I13V, I15IV, L19I, N37S, R41K, W42WS, L63V, H69K, T74TS, V77I, L89M, I93L, L97LIC
 IRL31325IRL31325JN622877None   T12S, I13V, I15V, L19I, K20R, E35ED, M36I, R41K, R57K, L63PS, H69K, T74S, L89M, I93LC
 IRL06795IRL06795JN622898None   I13V, K14S, L19M, M36I, R41K, K45R, D60E, L63P, H69K, L89I, I93LC
 IRL21039IRL21039JN622909None   I13V, I15V, L19I, M36I, R41K, H69K, L89M, I93LC
 IRL35265IRL35265JN622963None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63AV, I64M, H69K, L89M, I93LC
 IRL63858IRL63858JN622978None   I13V, I15IV, L19I, M36I, R41K, L63T, I64M, H69K, L89M, I93LC
Gaspareto (2012)MBOS8MBOS8PTHM752152None   I13V, K14R, I15V, M36I, N37K, R41N, Q61H, H69K, L89M, I93LC
 AO66AO66PTHM752186None   I13V, M36I, N37K, R41N, L63A, H69K, L89IC
 GNH72GNH72PTHM752191None   I13V, I15V, K20R, M36I, N37K, R41N, I62V, L63A, H69K, I93LC
Hingankar (2012)IN-NARI-4-001IN-NARI-4-001JN314892None   I13V, I15V, L19I, M36I, L63P, H69K, I72IV, V82I, L89M, I93LC
 IN-NARI-4-022IN-NARI-4-022JN314911None   T12S, I13V, I15V, L19T, K20R, M36I, R41K, D60E, Q61E, L63T, H69K, L89M, I93LC
 IN-NARI-4-026IN-NARI-4-026JN314915None   I13V, Q18H, L19I, M36I, R41RK, D60DE, L63T, I64L, H69K, L89M, I93ILC
 IN-NARI-4-035IN-NARI-4-035JN314923None   T12S, I13V, K14KR, I15V, G16E, L19I, M36I, R41K, K45R, L63S, I64M, H69K, L89M, I93LC
 IN-NARI-4-037IN-NARI-4-037JN314925None   T12PS, I13V, I15V, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
 IN-NARI-4-040IN-NARI-4-040JN314927None   T12S, I13V, K14R, L19IT, K20R, M36I, R41K, L63PS, H69K, K70KR, V82I, L89M, I93LC
 IN-NARI-4-061IN-NARI-4-061JN314943None   T12S, I13V, I15V, L19I, M36L, N37S, R41K, D60DE, Q61QE, L63P, H69K, L89M, I93LC
 IN-NARI-4-068IN-NARI-4-068JN314949None   T12S, I13V, I15V, L19T, K20I, M36I, R41K, L63LAPV, H69K, T74A, L89M, I93LC
 IN-NARI-4-074IN-NARI-4-074JN314955None   T12S, I13V, K14R, I15V, L19I, K20I, M36I, R41K, L63S, I64M, H69K, L89MC
 IN-NARI-4-078IN-NARI-4-078JN314958None   T12S, I13V, I15V, L19IT, M36I, R41K, L63P, H69K, T74TS, L89M, I93LC
 IN-NARI-4-084IN-NARI-4-084JN314963None   T12S, I13V, I15IV, L19I, M36I, R41K, L63P, H69K, L89M, I93LC
 IN-NARI-4-097IN-NARI-4-097JN314973None   I13V, I15V, K20R, M36I, N37D, R41K, D60E, L63P, H69K, P79S, L89I, I93LC
 IN-NARI-4-109IN-NARI-4-109JN314983None   I13V, L19I, K20KR, M36IL, R41K, D60E, L63P, H69K, L89LM, I93LC
Hunt (2012)GP09_2160GP09_2160KF736747None   I13V, I15V, L19I, E35ED, M36MI, R41K, D60E, H69K, V77VI, L89M, I93LC
 KZN07_253402KZN07_253402KF736641None   I13V, I15V, G16E, L19I, M36I, H69K, I93LC
 GP07_216943GP07_216943KF736574None   T12S, I13V, I15V, L19I, L23LP, M36I, N37ND, R41RK, K43I, R57K, D60H, L63P, H69K, L89MC
 KZN09_386472KZN09_386472KF736793None   I13V, Q18H, L19I, M36I, R41K, H69K, T74S, L89M, I93LC
 GP09_0092GP09_0092KF736713None   I13V, I15V, L19I, M36I, R41K, L63Q, I64L, H69K, L89M, I93LC
 GP08_0483GP08_0483KF736650None   T12TA, I13V, I15IV, L19I, M36I, R41K, D60E, L63P, H69K, V75VI, L89I, I93L, L97IC
 KZN08_340529KZN08_340529KF736699None   I13V, L19V, K20R, M36V, N37S, R41K, H69K, L89M, I93LC
 GP08_0549GP08_0549KF736652None   I13V, L19I, M36I, N37S, R41K, L63V, H69K, T74S, L89M, I93LC
 GP07_217150GP07_217150KF736576None   L10LI, T12S, I13V, K14KR, I15V, L19T, K20R, M36I, R41K, Q61E, L63S, C67CY, H69K, I93LC
Karlsson (2012)SE_84SE_84JQ698722None   T12P, I13V, K14R, I15V, M36I, R41K, L63P, H69K, T74TS, L89M, I93LC
Nwobegahay (2012)BBCR53ZABBCR53ZAGU177494None   T12S, I13V, L19I, E35D, M36I, R41K, L63P, H69K, V82I, L89M, I93LC
Sinha (2012)AIIMS-26AIIMS-26HQ453367None   I13V, I15V, L19IT, M36I, N37ST, R41K, K43KIR, D60E, Q61E, L63P, H69K, L89M, I93LC
 AIIMS-46AIIMS-46HQ453375None   T12S, I13V, I15ILV, L19I, M36I, R41K, K45R, Q61H, L63P, H69K, T74A, L89M, L90LS, I93LC
 AIIMS-47AIIMS-47HQ453376None   T12A, I13V, I15V, L19I, M36I, R41K, L63P, H69K, T74S, L89M, I93LC
 AIIMS-69AIIMS-69HQ453386None   T12S, I13V, K14R, I15V, L19I, E35D, M36I, R41K, C67CY, H69K, T74S, L89M, I93LC
Alencar (2013)RJ2-0037RJ2-0037JQ237956None   I13V, K14R, I15V, M36I, N37K, R41N, L63LP, H69K, K70KR, L89M, I93LC
 SP2-0023SP2-0023JQ238009None   I13V, I15V, M36I, R41K, I64M, H69K, V82I, L89MC
 PE2-0023PE2-0023JQ238026None   I13V, I15V, N37K, R41N, L63V, I64M, H69K, T74S, L89M, I93LC
Bila (2013)MZ10-195_XAHIV-1KF927295None   T12S, I13V, I15V, L19I, E35D, M36I, R41K, L63P, H69K, L89M, I93LC
 MZ09-037HIV-1KF927198None  V11IT12S, I13V, I15V, L19I, M36MI, R41K, D60E, L63LP, H69K, L89M, I93LC
 MZJUN45HIV-1KF927414None   I3S, T12S, I13V, I15V, L19I, M36I, R41K, K43I, D60N, H69K, L89MC
 MZ09-092HIV-1KF927225None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63P, H69K, L89M, I93LC
 MZ09-013HIV-1KF927179None  L33II13V, L19I, N37S, P39S, R41K, D60E, L63P, C67Y, H69K, A71V, I93LC
 MZ10-142HIV-1KF927249None   T12S, I13V, I15V, L19I, E35D, M36I, R41K, I62V, L63P, H69K, A71V, I93LC
 MZ10-249HIV-1KF927340None   T12S, I13V, G16E, L19I, K20R, D29DG, E35D, M36I, R57K, D60E, Q61E, L63P, H69K, L89M, I93LC
 MZJUN41HIV-1KF927413None  I84MT12S, I13V, I15V, G16E, L19I, N37S, R41K, D60E, H69K, L89M, I93LC
 MZ09-091HIV-1KF927224None   T12S, I13V, I15V, L19I, K20R, M36I, R41EK, H69K, L89M, I93LC
 MzTet239HIV-1KF927365None   Q2I, L5P, Q7H, I13V, L19T, K20R, M36I, R41K, I62V, L63P, I64L, H69K, K70R, L89M, I93L, F99YC
Brooks (2013)CAN2013-148CAN13-148KF727712None   T12S, I13V, I15V, L19I, M36I, N37H, R41K, H69K, L89M, I93LC
 CAN2013-184CAN13-184KF727713None   T12S, I13V, I15V, L19I, M36I, N37H, R41K, H69K, L89M, I93LC
 CAN2013-205CAN13-205KF727714None   T12S, I13V, I15V, L19I, M36I, N37H, R41K, H69K, L89M, I93LC
Chen (2013)11YNHH08511YNHH085JX412350None   I13V, I15V, L19V, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 11YNHH02111YNHH021JX412333None   T12S, I13V, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
 11YNHH00911YNHH009JX412329None   I13V, I15V, L19I, M36I, R41K, D60E, L63P, H69K, L89M, I93LC
Ferreira (2013)BR09SP306BR09SP306HM534034None   I13V, I15V, M36I, N37K, R41N, Q61N, I64L, H69K, L89M, I93LC
 BR09SP603BR09SP603HM534043None   I13V, I15V, M36T, N37K, R41N, L63P, H69K, L89M, I93LC
 BR09SP350BR09SP350HM534176None   I13V, K20R, M36I, N37K, R41I, Q61QE, L63LP, H69K, L89I, I93LC
 BR09SP364BR09SP364HM534190None   I13V, I15V, A22AT, N37K, R41N, I64M, H69K, L89M, I93LC
Frentz (2013)EHR-18863EHR-18863JX299851None   I13V, K14KR, I15V, M36I, R41K, L63P, H69K, L89M, I93LC
 EHR-34213EHR-34213JX300118None   T12S, I13V, I15V, G16E, L19I, M36I, R41K, D60E, L63S, H69K, L89M, I93LC
 EHR-40516EHR-40516JX300223None   T12S, I13V, I15V, L19I, K20R, M36I, N37T, P39S, R41K, I62V, I64M, H69K, L89M, I93LC
 EHR-46772EHR-46772JX300322None   I13V, I15V, K20R, M36I, R41K, G68E, H69K, L89IM, I93LC
 EHR-55111EHR-55111JX300458None   T12S, I13V, K14R, I15V, G16GE, L19T, M36I, R41K, L63T, I64M, H69K, L89M, I93L, N98NDC
 EHR-58400EHR-58400JX300513None   L10V, I13V, M36I, N37K, R41NS, H69K, L89MC
 EHR-62678EHR-62678JX300588None   I13V, I15V, M36I, R41K, G51E, L63A, E65ED, H69K, L89M, I93LC
 EHR-77225EHR-77225JX300865None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 EHR-79197EHR-79197JX300897None   T12S, I13V, I15V, K20R, M36I, R41K, L63T, H69K, L89M, I93LC
 EHR-87037EHR-87037JX301014None   L10I, I13V, K14R, I15V, G16GE, L19LI, K20R, T26S, M36I, R41K, Q61QE, H69K, V82I, L89M, I93LC
Han (2013)LCDR186ILCDR186IJX070473None   I13V, L19M, M36V, R41K, L63P, I93LC
Hawke (2013)1831716918317169KC237995None   T12S, I13V, I15V, L19I, M36I, N37K, R41N, R57K, D60N, L63P, H69K, L89M, I93LC
 9077520 H9077520 HKC238252None   I13V, I15IV, K20R, M36I, N37D, R41K, L63V, I64V, H69K, I93LC
Kiertiburanakul (2013)R12075R12075KC994221None   T12S, I13V, L19I, K20R, M36I, R41K, L63APT, I64IM, H69K, P79D, L89IM, I93LC
 R51TS065R51TS065KF059702None   T12S, I13V, K14R, I15V, G16E, L19I, M36I, R41K, K43R, L63CS, H69K, K70R, V82I, L89IM, I93LC
Kiptoo (2013)KAP007KAP007KC516875None   T12S, I13V, G17GD, L19I, K20R, M36I, R41K, H69K, L89M, I93IVC
 SNH041SNH041KC516987None   T12S, I13V, I15V, L19I, M36I, R41K, D60E, Q61QE, I62V, L63I, H69K, L89MC
 SNH074SNH074KC516954None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, I62V, L63I, H69K, L89MC
Mulu (2013)ETH-G-5735ETH-G-5735KF026179None  L33IKT12S, I13V, L19T, E34EK, M36T, R41K, K45R, D60E, Q61E, L63P, H69K, L89M, I93LC
 ETH-G-5747ETH-G-5747KF026183None   I13V, I15V, E35D, M36I, R41K, R57K, H69K, L89MC
 ETH-G-5746ETH-G-5746KF026182None   I13V, G16E, E35D, M36I, R41K, R57K, H69K, L89MC
 ETH-G-5669ETH-G-5669KF026153None   L10I, I13V, I15V, L19I, M36I, R41K, I64M, H69K, L89M, I93LC
 ETH-G-5705ETH-G-5705KF026164None   I13V, K20R, M36I, N37D, R41K, L63T, H69K, L89M, I93LC
 ETH-G-5660ETH-G-5660KF026151None   I13V, L19I, M36I, R41K, H69K, T74S, L89M, I93LC
 ETH-G-5545ETH-G-5545KF026105None   T12P, I13V, I15V, L19I, M36I, R41K, L63H, H69K, L89M, I93LC
Temereanca (2013)SR9SR9JX966535None   T12S, I13V, I15V, L19V, M36I, N37S, R41K, L63T, I64M, H69K, L89M, I93L, L97IC
Van Zyl (2013)88317KC423335None   I13V, I15V, L19I, M36I, N37S, R41K, L63P, H69K, L89M, I93L, C95XC
 531048KC422834None   I13V, L19I, M36I, R41K, D60E, H69K, V82I, L89M, I93LC
 484243KC423706None   T12S, I13V, L19I, M36I, R41K, D60E, H69K, L89M, I93LC
 1041457KC424070None   I13V, I15V, G16E, M36I, D60E, L63T, I64L, H69K, I72T, L89M, I93LC
 15902038KC423580None   T12S, I13V, I15V, L19I, E35D, M36I, R41K, D60E, Q61D, L63P, H69K, L89M, I93LC
 981005KC422799None   T12P, I13V, I15V, G16E, L19I, M36I, R41K, D60E, L63T, H69K, T74A, L89M, I93LC
 27825KC423732None   T12S, I13V, I15V, L19T, K20R, M36I, R41K, H69K, I72V, L89M, I93LC
 22965KC423909None   L10I, I13V, G16E, L19I, M36I, R41K, L63H, H69Q, I93LC
 111622KC423277None   T12S, I13V, G16E, L19T, K20L, M36I, L63H, H69K, L89M, I93LC
 1081406KC424043None   T12S, I13V, I15V, L19T, K20R, M36I, R41K, L63S, H69K, L89M, I93LC
 978298KC423916None   I13V, L19T, K20R, M36I, R41K, H69K, I93LC
 1292752KC424266None   L10I, T12S, I13V, K14R, I15V, L19I, M36I, R41K, L63P, H69Q, L89M, I93LC
 4971274KC423022None   T12S, I13V, I15V, L19I, K20R, M36I, R41K, D60E, H69K, L89M, I93LC
 14002099KC423616None   I13V, I15V, L19I, M36I, R41K, D60E, Q61E, L63P, H69K, L89M, I93LC
 1051337KC423992None   T12S, I13V, K14T, I15V, L19I, K20R, M36I, R41K, D60E, L63P, C67Y, H69K, L89I, I93LC
 99344KC424061None   T12S, I13V, K14R, I15V, L19I, M36I, R41K, D60E, Q61E, H69K, L89M, I93LC
 16061960KC423533None   I13V, L19T, K20R, M36I, R41K, H69K, L89M, I93LC
 12531222KC422974None   I13V, I15V, L19I, M36I, N37D, R41K, L63GISV, I64M, H69K, V82I, L89M, I93LC
 288447KC424066None   T12S, I13V, I15V, L19I, K20M, E34G, M36I, R41K, D60E, L63P, H69K, V82I, L89M, I93LC
 20138KC424024None   Q2R, T12S, I13V, K14R, I15V, L19I, M36I, R41K, D60E, Q61E, H69K, L89M, I93L, N98YC
 1149975KC424408None   I13V, L19I, K20R, M36I, R41K, L63T, H69K, T74S, V77I, L89M, I93LC
  3001KC423926None   I13V, L19I, K20R, M36I, R41K, L63T, H69K, T74S, V77I, L89M, I93LC