Protease Inhibitors

HOME Genotype-Rx Genotype-Pheno Genotype-Clinical hivdb program

Protease Inhibitors

Subtype	B
Gene	PR
Mutation	L63Q
Rx	>= 1 PI
IncludeMixtures	No

References	37
Patients	161
Isolates	212

Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr)	Patient	Isolate	Acc#	PIs	Wks	PIMajorDRMs	PIMinorDRMs	OtherMut	Subtype
Schapiro (1996)	EV10	EV10_W24	AF013844	SQV	24	L90M		T31X, R41K, K55R, L63Q, I64V, T74A	B
	EV4	EV4_W24	AF013882	SQV	24			N37S, D60E, I62V, L63Q, E65D	B
Zhang (1997)	3PoBV	3PoBV29		IDV	29	M46L		L10I, L63Q, Q92R, I93L	B
		3PoBV33		IDV	33	M46L		L10I, L63Q, Q92R, I93L	B
		3PoBV37		IDV	37	M46L, V82A		L10I, I62V, L63Q, I93L	B
		3PoBV46		IDV	46	M46L, I54V, V82A		L10I, I62V, L63Q, I93L	B
		3PoBV53		IDV	53	M46L, I54V, V82A		L10I, G52S, K55Q, I62V, L63Q, I93L	B
		3PoBV66		IDV	66	M46I, I54V, V82A	L24I	L10I, I62V, L63Q, A71V, I93L	B
		3PoBV75		IDV	75	M46I, I54V, V82A	L24I	L10I, I62V, L63Q, A71V, I93L	B
Craig (1998)	Craig-Pt22	22W48		SQV	48	M46I, G48V, L90M		L10V, M36I, D60E, L63Q, I64V, I72V	B
Patick (1998)	503-203	503-203W4		NFV	4			M36I, L63Q, I64V, I72V	B
Shafer (1998)	HMDR-3	3-896	AF047316	SQV, IDV, RTV	54	G48V, I54IT, V82A		L10I, R41K, Q61H, I62V, L63Q, A71V, T74A, V77I, I93L	B
		3-1196	AF047313	SQV, IDV, RTV	67	G48V, I54T, V82A		L10I, R41K, Q61H, L63Q, A71V, T74A, V77I, I93L	B
		3-197C	AF047320	SQV, IDV, RTV	76	G48V, I54T, V82A		L10I, G16A, R41K, Q61H, I62V, L63Q, A71V, T74A, V77I, I93L	B
Deeks (1999)	SD-21	SD-21	AF124556	IDV		V82A		L10I, K14R, R41K, M46X, I54X, L63Q, I64V	B
Murphy (1999)	ACTG347_0293	293_PR_w22		APV	21	I54IM		Q7QR, K14KR, E21EG, L63Q, I72IV	B
	ACTG347_0009	009_PR_w14		APV	13			L63Q	B
Zolopa (1999)	CA1323	CA3320	AF085139	SQV, NFV	49	D30DN		L63Q, I64V, I72V	B
Bacheler (2000)	LB3-P25	P25-0		IDV	2			L33V, R41K, L63Q, I64V, E65D	B
		P25-18		IDV	20			L33V, R41K, L63Q, I64V	B
	LB3-P77	P77-12		IDV	12			I62V, L63Q, V77I, I93L	B
		P77-16		IDV	16	V82A		I62V, L63Q, V77I, I93L	B
		P77-32		IDV	32	M46I, I54V, V82A		L10I, I62V, L63Q, V77I, I93L	B
		P77-48		IDV	48	M46I, V82A	L24I	L10I, K55R, I62V, L63Q, V77I, I93L	B
		P77-72		IDV	72	M46I, V82A	L24I	L10I, K55R, I62V, L63Q, V77I, I93L	B
		P77-96		IDV	96	M46I, V82A	L24I	L10I, K55R, I62V, L63Q, V77I, I93L	B
	LB3-P87	P87-28		IDV	28	V82A		K14R, R41K, L63Q, I64V	B
		P87-60		IDV	60	M46I, V82A	L10F, L24I	K14R, R41K, L63Q, I64V	B
		P87-72		IDV	72	M46I, V82A	L10F	K14R, R41K, L63Q, I64V	B
Balotta (2000)	CB-137	CB-137	AF252006	SQV, RTV, IDV		G48GV, I54IV, V82VA		L10LI, I13IV, N37T, L63Q, I64V, T74S, V77I	B
	CB-203	CB-203	AF252042	RTV		V32VI, M46I, V82VA, I84V, L90LM	Q58E	I15IV, L19LV, K20R, E35D, M36I, L63Q, I64V, E65D, T91TS, C95X, T96TS	B
	CB-245	CB-245	AF252027	RTV, IDV		I54V, V82A, L90M		L10I, I15V, K20R, M36MI, R41K, Q61H, L63Q, I64IV, H69K, A71V	B
	CB-307	CB-307	AF252080	IDV		M46L, V82A		R41K, L63Q, I64V, V77VI, I93L	B
Parkin (2000)	SD-21	SD-21_12	AF294546	IDV, SQV, NFV	12	G48V, V82A		L10I, K14R, N37ND, R41K, L63Q, I64V	B
		SD-21_16	AF294547	IDV, SQV, NFV	16	V82A		R41K, L63Q, I64V	B
		SD-21_20	AF294548	IDV, SQV, NFV	20	G48V, V82A		L10I, K14R, N37ND, R41K, L63Q, I64V	B
		SD-21_24	AF294549	IDV, SQV, NFV	24	G48V, V82A		L10I, K14R, N37D, R41K, L63Q, I64V	B
Sevin (2000)	SA-090949k	SA-090949k	AF226097	SQV	122			T12S, I13V, K14R, G16E, E35D, N37A, L63Q, I64V	B
Dunne (2001)	ALD-pt3	ALD-pt3	AF369798	PI	NA	L90LM		E35ED, R41K, L63Q, I64V, V82I	B
	ALD-pt11	ALD-pt11	AF369805	PI	NA	D30N	N88D	I13V, E35D, M36L, I62V, L63Q, I64V, T74S	B
Eshleman (2001)	A064	AF357762	AF357762	NFV	13			K14R, L63Q, I64V, V77VI	B
		AF357816	AF357816	NFV	50	L90M		K14R, L63Q, I64V, V77I	B
	A096	AF357825	AF357825	NFV	50	N88NS		L10V, I13V, K14R, L19I, K20I, L33V, R57K, I62V, L63Q, I64V, E65D, T74S, I85IL	B
	A098	AF357780	AF357780	NFV, Unknown	>1			L63Q, I64V	B
	A139	AF357796	AF357796	NFV	26			L10LI, L63Q, I64V	B
Gonzales (2001)	CA1462	CA3901	AY030597	IDV, NFV	80	L90M		K20I, E35D, M36I, L63Q, I64V, A71V, I72V, I93L	B
	CA1581	CA4511	AY030680	SQV, IDV, NFV, RTV	153	M46I, I84V	L24I, T74P	L10I, K43R, D60E, I62V, L63Q, I64V, H69R, A71V, V77I, I93L	B
	CA2083	CA7711	AY030791	SQV, IDV, NFV	117	M46I, I84V, L90M	G73C	L10I, K20I, D60E, L63Q, I64V, V77I, I85V	B
	CA2084	CA7713	AY030792	IDV, NFV	98	M46I, N88S	L10F, Q58QE	I13V, K14R, K20I, N37D, L63Q, I64V, I72V, I93L	B
	CA4069	CA9516	AY031064	IDV, SQV	19			N37NT, L63Q, I64V	B
	CA4375	CA10788	AY031233	IDV, SQV, NFV	175	M46I, I54V, V82F, I84V, L90M	K43T	L10I, E35DN, M36I, F53Y, I62V, L63Q, I64V, A71V, I93L	B
	CA4566	CA11217	AY031363	IDV	168	M46I, I54V, V82A	L10F, L33I	N37C, K43KN, K55R, R57K, L63Q, I64V, K70R, I85V, L89M	B
	CA4899	CA12097	AY031539	SQV, IDV	189	M46I, L90M	G73C	L10I, K20I, I62IV, L63Q, I64V, I72T, T74S, V77I, I93L	B
	CA5258	CA12898	AY031815	IDV	121			I15V, E35D, L63Q	B
	CA5465	CA13538	AY032004	IDV	74	M46L, I54V, V82A		L63Q, I64V	B
	CA5478	CA13553	AY032017	PI	NA	G48V, I54S, V82A		L10I, I15V, L63Q, I64V, A71V, I93L	B
	CA6481	CA16270	AY032432	IDV	9			L19I, N37S, L63Q, I64IV, V77I	B
Servais (2001)	JS14	JS98060	AJ401920	SQV, RTV, IDV	96	I54V, V82A	Q58E	I15V, K20R, E35D, M36I, N37D, R41K, G51K, K55N, L63Q, H69Y, I85V, L89M	B
		JS98119	AJ401925	SQV, RTV, IDV	112	M46L, I54V, V82A	Q58E	I15V, K20R, E35D, M36I, N37D, R41K, G51K, K55N, L63Q, H69Y, I85V, L89M	B
		JS98231	AJ401937	SQV, RTV, IDV	136	M46L, I54V, V82A	Q58E	I15V, K20R, E35D, M36I, N37D, R41K, G51K, K55N, L63Q, H69Y, I85V, L89M	B
		JS99285	AJ401974	SQV, RTV, IDV	156	M46L, I54V, V82A	L24I, Q58E	L10I, I15V, K20R, E35D, M36I, N37D, R41K, G51K, K55N, L63Q, H69Y, I85V, L89M	B
Gibb (2002)	DMG56	56_w18		NFV	19			L33V, N37C, L63Q, I64V	B
	DMG59	59_w52		NFV	53			L33V, N37C, L63Q, I64V	B
	DMG71	71_w83		NFV	83			L33V, N37C, L63Q, I64V	B
Kantor (2002)	CA1462	CA11095	AY047429	IDV, NFV, SQV, RTV	146	I54V, L90M		K20I, E35D, M36I, L63Q, I64V, A71V, I72V, I93L	B
Margot (2002)	MM-504336614	5043366141		PI	NA	G48V, V82A, L90M		L10I, L63Q, I64V, T74S, V77I	B
	MM-270236656	2702366561		PI	NA	M46I		L10V, A22V, R41K, D60E, I62V, L63Q, I64V, V77I, I85V	B
	MM-410836850	4108368501		PI	NA	D30N	L10F, L33F, N88D	E35D, M36L, N37C, R41K, R57K, D60E, I62V, L63Q, I64V	B
	MM-208936677	2089366771		PI	NA			L19I, E35D, M36MI, N37NS, R41K, L63Q, I64V, I72IT	B
	MM-381736661	3817366611		PI	NA			L10I, A22AT, N37T, I62V, L63Q, C67D, I93L	B
	MM-409436609	4094366091		PI	NA	I54V, V82T	F53L	I13V, G16E, L63Q, I64V, A71V, T74S	B
Tural (2002)	880410	880410		IDV, SQV, RTV, NFV	118			D60E, I62V, L63Q, I64L, V77I, I93L	B
	880904	880904		RTV, IDV, SQV, NFV	126	M46I, I54V	L24I, Q58E	L10I, K20I, E35D, L63Q, I64V, T74S	B
Venturi (2002)	GV-21	GV-21.1	AF517273	SQV	105			I15V, N37S, R41K, L63Q, I72V, T74AS	B
Gonzales (2003)	CA4416	CA25594	AY047469	NFV, SQV, RTV, IDV	108	M46I		L19I, N37T, G51A, L63Q, I64V, G73X, V77I	B
Monno (2003)	ML_Pat27	ML_Pat27		PI	NA			L10V, I13V, L33V, N37T, R41KL, L63Q, I64V	B
Saah (2003)	AS-43	AS-43		NFV	75			L33V, R41K, L63Q, I64V	B
Shafer (2003)	A384_2453	2453b		NFV	11			T12P, K14R, E35D, M36I, R41K, L63Q	B
		2453c	EF548322	NFV	28			T12AP, K14R, E35D, M36I, R41K, L63Q, I64V	B
		2453d	EF548323	NFV	36			T12P, K14R, E35D, M36I, R41K, L63Q, I64V	B
	A384_0567	0567b	EF548826	NFV, Unknown	>17			I13IV, R57RK, D60E, L63Q, I64V, V77I	B
Wu (2003)	CA1323	CA17009	AF544461	SQV, NFV, RTV	145			L63Q, I64V, I72V	B
	CA2084	CA8472	AF544524	IDV, NFV, SQV	112	M46I, N88S	L10F, Q58E	I13V, K14R, K20I, N37D, L63Q, I64V, I72V, I93L	B
	CA2250	CA11850	AF544531	IDV, NFV	90	D30N		I13V, L19LI, I62X, L63Q, I64V, E65D, K70KR	B
	CA4416	CA10832	AF544559	NFV	73	D30N		L19I, N37T, L63Q, I64V	B
	CA4899	CA35528	AY798449	SQV, IDV	188	M46I, L90M	G73C	L10I, K20I, L63Q, I64V, I72T, T74S, V77I, I93L	B
		CA16268	AF544577	SQV, IDV, RTV	224	M46I, L90M	G73C	L10I, K20I, I62V, L63Q, I64V, I72T, T74S, V77I, I85IV, I93L	B
Colonno (2004)	RC-009-014-023	014-02311		NFV		D30N, M46I, N88S		L10I, I13V, E35D, N37Y, R41K, L63Q, I64V, I72V, V77I, I85V	B
Gomez-Carrillo (2004)	98854	98854	AY365585	PI	NA	D30N, M46I	L33F, N88D	N37D, L63Q, I93L	B
	98886	98886	AY365587	PI	NA	V32I, M46I, I54V, V82A, L90M	F53L	L10I, R41K, L63Q, A71V, V77I	B
	99376	99376	AY365598	PI	NA	V32I, I54V, L90M	L33F, N83D	L10I, I13V, K14R, M36V, N37S, R41K, L63Q, I64V, A71V	B
	101220	101220	AY365631	PI	NA			L10LI, E35D, N37S, L63Q, I64V, I93L	B
	108911	108911	AY365799	PI	NA			I15IV, N37T, L63Q, I72V	B
	110073	110073	AY365830	PI	NA	M46I, I84IV, L90M	G73GC, T74P	L10LI, K14R, I15V, K20I, M36I, I62V, L63Q, I64V, A71V, I72V, I93L	B
Gulick (2004)	RG290	RG290w33		NFV	27			P39Q, K43R, I62V, L63Q, A71T, I72V, V77I, F99X	B
Rhee (2004)	NP-D21	NP-D21		Unknown, IDV, SQV, NFV	NA	M46I, I54V, V82A		L10I, L63Q	B
Rhee (2005)	CA1323	CA37938	AY796623	SQV, NFV, RTV, Unknown	>145			L63Q, I64V, I72V	B
	CA1487	CA9833	AY796718	IDV, SQV, RTV, Unknown	>98			I62V, L63Q	B
	CA1581	CA10737	AY796785	SQV, IDV, NFV, RTV	187			L10I, K43R, D60DE, Q61E, I62V, L63Q, C67Y, A71V, V77I, I93L	B
	CA2107	CA17581	AY796881	RTV, IDV, SQV, NFV	98			L10I, I15V, M36L, N37S, I62V, L63Q, I93L	B
	CA2250	CA8163	AY796908	IDV	58			I13V, L19I, I62V, L63Q, I64V, E65D, K70R	B
	CA4375	CA20523	AY797068	IDV, SQV, NFV	175	M46I, I54V, V82F, I84IV, L90M	K43T	L10I, E35D, M36I, R41RK, F53SY, I62V, L63Q, I64V, G68GA, A71AV, I93IL, C95CS	B
	CA4416	CA17027	AY797088	NFV, SQV, RTV, IDV, Unknown	>112	M46I	G73T	L19I, N37T, G51A, L63Q, I64V, A71AV, V77I	B
	SWC-3926	P3926-148		SQV, IDV	24	G48V, I54V, V82A		L10I, I15V, Q18L, N37D, L63Q, A71T, I93X	B
		P3926-623		SQV, IDV, RTV, NFV	54	G48V, I54V, V82A		L10I, K14R, I15V, Q18L, M36I, N37D, L63Q, A71V, R87K, Q92P, I93L	B
		P3926-732		SQV, IDV, RTV, NFV	61	G48V, I54V, V82A		L10I, I15V, Q18IL, M36I, N37D, I62V, L63Q, A71V, T74S, I93X	B
	CA4899	CA20524	AY797189	SQV, IDV, RTV	224			R8RQ, L63Q, I64V, I72T	B
		CA21269	AY797190	SQV, IDV, RTV	224			L63Q, I64V, I72T	B
		CA34150	AY797191	SQV, IDV, RTV, Unknown	>224			L63Q, I64V, I72T	B
		CA41240	AY797192	SQV, IDV, RTV, Unknown	>224			L63Q, I64V, I72T	B
	CA5258	CA24819	AY797279	IDV, NFV	184			I15V, E35D, L63Q	B
		CA33251	AY797280	IDV, NFV	229			I15V, E35D, L63Q	B
		CA48135	AY797281	IDV, NFV, SQV, RTV, LPV	301			I15V, E35D, L63Q	B
	CA6481	CA34113	AY797413	IDV	9			K14KR, L19I, N37S, L63Q, V77I	B
	CA7081	CA17545	AY797508	Unknown, SQV, RTV, NFV, APV	>160	I54M		R57K, L63Q, I64V	B
	CA8037	CA20556	AY797665	IDV, NFV	258	I54V, V82F, L90M		L5LV, L10I, N37NS, D60DE, Q61QH, L63Q, I64IV, H69HY, A71V, I72V, V77I, I93L	B
		CA48179	AY797666	IDV, NFV	437	I54V, V82F, L90M		L10I, N37NS, D60E, I62V, L63Q, I64V, H69Y, A71V, I72V, V77I, I93L	B
	CA9849	CA24257	AY797888	IDV, NFV, APV	201	D30N	L33F, N88D	N37NS, L63Q, A71V	B
	CA14219	CA33342	AY798010	IDV, NFV	294	M46L, I54V, V82A	L24I	L10V, T12P, I15V, G16E, L19I, K20M, M36I, R41K, K55KR, D60DE, I62V, L63Q, I64V, T74S	B
		CA38194	AY798011	IDV, NFV	296	M46L, I54V, V82A	L24I	L10V, T12P, I15V, G16E, L19I, K20M, M36I, R41K, V56VA, D60DE, I62V, L63Q, I64V, T74S	B
		CA38196	AY798012	IDV, NFV	296	M46L, I54V, V82A	L24I	L10V, T12P, I15V, G16E, L19I, K20M, M36I, R41K, I62V, L63Q, I64V, T74S	B
	CA16175	CA38488	AY798186	IDV, SQV, RTV	326	V32VI, M46ML, V82VA	L10LF	L63Q, I64V, A71AV, V77I	B
	CA17692	CA41626	AY798282	IDV	239			K14KR, L19I, N37S, L63Q, I64IV, V77I	B
	CA21093	CA48499	AY798315	Unknown, NFV	>114			K14R, I15V, E35D, N37D, L63Q, I64V, E65D	B
Baxter (2006)	12-4076	4076-30311	DQ876128	PI	NA	M46I, I54V, V82A	L24I, Q58E	L10V, L19I, E34EQ, E35D, N37S, D60DE, I62V, L63Q, I64V, E65D, V77I	B
	12-4012	4012-30130	DQ876168	PI	NA	G48V, I54V, V82A, I84V		L10I, I13V, K20T, Q61H, L63Q, I64V, T74S, V77VI, T91TCS	B
	12-2399	2399-30818	DQ876221	PI	NA	V32I, M46I, I47V, I54L, I84V, L90M	L10FY	I15V, G16A, K20V, E34Q, L63Q, I64V, H69Q, T74S, V77I, I85V, L89I, T91S, Q92K	B
	12-1308	1308-30408	DQ876223	PI	NA	M46L, G48V, I54T, V82A	L24LI, L33F, K43T	L10I, I13V, K20R, E35D, M36I, N37D, I62V, L63Q, I72V, T74S, I85V, L89M	B
	12-1902	1902-30609	DQ876280	PI	NA	I54V, V82A		L10I, T12K, I15V, L19I, R57RK, D60E, I62V, L63Q, I64IV, A71T, I72V, V77VI, I85V	B
	12-1831	1831-30530	DQ876389	PI	NA	M46L, I54V, V82A	L24I, L33F	L10I, M36ML, K55R, I62V, L63Q, A71V, I93L	B
	12-2115	2115-30625	DQ876392	PI	NA	M46I, I54V, I84V, L90M	L10F, G73C	I13V, G16E, K20I, I62V, L63Q, I64V, T74S, T91S	B
	12-2091	2091-30711	DQ876411	PI	NA	M46L, I54A, V82A	L24I, L33F, K43T, N83D	L10I, I13V, K20KR, M36L, N37D, Q61QHKN, I62V, L63Q, I64V, I72IV, T74AS	B
	12-2104	2104-30619	DQ876432	PI	NA	G48V, I54T, V82T	L33F	L10I, I13V, M36L, N37D, D60E, I62V, L63Q, I66F, H69Y, A71V, I72T	B
	12-2492	2492-30821	DQ876666	PI	NA			L10I, K20R, M36I, N37D, R57K, I62V, L63Q, A71T, I93L	B
	12-1502	1502-30604	DQ876900	PI	NA	M46L, I54A, V82A	L24I, L33F, K43T, N83D	L10I, I13V, K20KR, M36L, N37D, Q61QHKN, I62V, L63Q, I64V, I72IV, T74AS	B
	12-1232	1232-30319	DQ877015	PI	NA	M46L, G48V, I54V, V82A, I84V		L10I, I15IV, K20KR, M36MI, I62V, L63Q, H69R, I72V, T74S	B
	12-1559	1559-30603	DQ877060	PI	NA	G48M, I54S, V82A	L33LF, Q58QE	L10I, L19T, K20R, M36I, I62IV, L63Q, I64V, A71V, T91A	B
	12-1592	1592-30701	DQ877107	PI	NA	M46I, I54V, L76V, I84V, L90M	V11I	L10I, T12P, I13V, I15V, G16E, K20I, Q61K, I62V, L63Q, I64V, A71V, V77I	B
	12-3067	3067-30402	DQ877206	PI	NA	M46I, L76V, V82F, L90M	L23I, L33F, Q58E	I13V, E35D, M36I, N37D, I62V, L63Q, I64V	B
	48-1104	1104-30630	DQ877405	PI	NA	M46I, V82A, L90M	F53L	L10I, R41K, I62IV, L63Q, A71V, T74S, V77I, I93L	B
	48-1843	1843-30930	DQ877447	PI	NA	M46MI, I47IV, I54IM, V82IM, L90LM		L10I, I13IV, K20I, N37T, Q61K, L63Q, I64V, V77I	B
	48-1247	1247-30610	DQ877770	PI	NA	M46I, I54V, L76V	L23I, L24I, F53L, Q58E	L10I, T12P, L19LI, N37S, I62V, L63Q, I64V, H69R, A71V, V77I, L89M, I93L	B
	48-3204	3204-30604	DQ878114	PI	NA	M46L, I54V, V82A, I84V	L33F	L10I, I13V, G16E, K20M, M36I, P39S, Q61QH, I62V, L63Q, I64V, T74AS	B
	48-3239	3239-30521	DQ878146	PI	NA	M46I, L76V, I84V, L90M	L10F, L33F, Q58E	I13V, K20R, E35D, M36I, N37DE, R57RK, I62V, L63Q, I64V, L89M	B
	48-3282	3282-30916	DQ878189	PI	NA	M46L, I54V, V82AT	L10F, L24I	I15V, K20R, E35D, M36I, R41K, K55R, R57K, I62V, L63Q, I64V, A71V, L89M	B
	48-4220	4220-30423	DQ878454	PI	NA	M46I, G48V, I50V, I54S, V82A		L10I, E34Q, F53Y, I62V, L63Q, A71V, I72V, T74S, V77I, I93L	B
	48-4249	4249-30721	DQ878482	PI	NA	M46L, I54V, V82A	K43T, T74P	L10V, I13V, I15V, L19V, K20M, E35D, M36I, N37NK, R41K, I62V, L63Q, I64V, L89M	B
	48-5078	5078-30903	DQ878588	PI	NA	I84V, L90M		L10I, K20I, L63Q, I64V, T74S, V77I, I85V	B
	48-6076	6076-30807	DQ878675	PI	NA			L10V, K14R, M36I, N37D, L63Q, I64V	B
	48-6086	6086-30528	DQ878681	PI	NA	I54V, L76V, V82F, L90M	G73GS, L89V	L10I, I13V, L19V, K20I, M36I, D60E, Q61N, I62V, L63Q, I64M, A71V	B
	48-6263	6263-30929	DQ878820	PI	NA	V82VA		I15V, G16E, M36MI, N37ND, I62V, L63Q, I72V	B
	48-6292	6292-30910	DQ878837	PI	NA	M46MI, I47IV, I54AV, V82S	L24I, L33F, F53FL	L10I, I13V, E34Q, D60E, I62V, L63Q, I64IV, I66F, A71V, T74E, V77I, T91TA, I93IV	B
	48-6311	6311-30925	DQ878849	PI	NA	M46I, I54V, L76V, V82A	L10F, L33LF	I13V, G16E, N37T, L63Q, I64V, T91TAS	B
	48-6329	6329-30924	DQ878862	PI	NA	I54IL, I84V	L33I, N83D	L10IV, T12IV, I13AV, A22V, E35D, M36I, Q61HN, I62V, L63Q, I64V, A71AT, I72IT, T74S, V75VI, T91TS	B
	48-7088	7088-30627	DQ878942	PI	NA	M46L, G48V, I54S, V82A	L33F, K43T	L10V, I13V, N37S, I62V, L63Q, I64V, I72V, T74A, V77I	B
	48-7145	7145-30602	DQ878983	PI	NA	I54V, V82A	L24I, Q58E	L10I, M36I, I62V, L63Q, I64V, H69R	B
	48-9267	9267-30915	DQ877518	PI	NA	V32I, M46I, I47A		L10V, G16A, E35D, M36MIV, N37T, I62V, L63Q, I64V, A71AV, I93L	B
	48-9182	9182-30901	DQ877535	PI	NA	M46I, I54A, I84V, L90M	L10F, L33F, Q58E, T74P	T12K, I13V, I15V, K20T, E35G, M36L, R41K, I62V, L63Q, I64V, A71V, L89M, I93L	B
	48-9257	9257-30916	DQ877608	PI	NA	M46MI, I50IV, I54V, V82M, L90M	L33LFI, K43T, F53FL, T74PS	L10V, I13V, K20R, E35D, M36I, N37D, I62V, L63Q, I64IV, L89LM	B
	48-9263	9263-30923	DQ877615	PI	NA	M46I, I54V, I84V, L90M	L10F, L33F, G73T	L19I, K55R, R57K, I62IV, L63Q, I64V, I66V, C67F, H69CR, I72V, V77I, I93L	B
	48-9283	9283-30929	DQ877622	PI	NA	M46I, I50V, V82A		L10I, L23V, E34Q, E35D, M36I, N37S, I62V, L63Q, I64V, H69Q, I93L	B
	48-9088	9088-30827	DQ877659	PI	NA	G48V, I54V, V82A	L33F, K43KT, F53L, N83D	L10I, I13V, L19I, K20R, E35D, M36I, N37C, R57K, I62V, L63Q, I64V, C67Y, I72V, V75I, T91TA	B
	48-9127	9127-30918	DQ877728	PI	NA			L10I, I13V, K14R, I15V, N37S, R41RK, I62V, L63Q, I64V, V77VI, I93L	B
Riddler (2008)	RG10778	RG10778w36		LPV	36			K14R, I15V, L19I, N37D, L63Q, I64L, V77I, I93L	B
	RG17932	RG17932w48		LPV	48			Q61D, L63Q, I64V, I72T	B
	RG30526	RG30526w18		LPV	18			Q2H, N37IS, L38F, R41K, R57G, L63Q, I66F	B
	RG74133	RG74133w19		LPV	19			I62V, L63Q, V77I	B
		RG74133w45		LPV	46			L63Q, I64V, V77I	B
	RG86088	RG86088w73		LPV	48			L33V, N37C, R41K, L63Q, I64V, E65ED	B
	RG92478	RG92478w87		LPV	79		K43KT	T12V, I13V, K14R, G16E, E35D, N37R, R41KN, K45KR, L63Q, I64V	B
Cardoso (2009)	3113	BRGO3113	FJ638451	PI	NA			K14R, L19I, L63Q, V77I	B
Rhee (2009)	CA7077	CA17540	FJ983223	IDV, NFV	196	M46I, I54V, V82A	L24I	L10I, M36MI, L63Q, A71V, I93L	B
Dau (2010)	05501A	05501A	GU581664	PI	NA	M46L, G48V, I50IV, I54V, V82A		L10I, I13IV, R41K, L63Q, I64V, E65D, V77I	B
	05573A	05573A	GU581671	PI	NA	I54M, L90M	L33F, Q58E	L10I, I13V, E35D, M36I, R41K, L63Q, I64V, I93L	B
	05601A	05601A	GU581674	PI	NA	M46I, I54V, V82A	L24I, L33I, F53L, Q58E	L10I, E35D, M36MI, N37S, I62V, L63Q, I64V, K70V, A71AV, T74K	B
	06695A	06695A	GU581770	PI	NA	M46I, I54V, V82A	L24I	L10I, K55R, L63Q, I64V, A71V, I93L	B
	06857A	06857A	GU581789	PI	NA	I54A, L90M	L10F, G73S, L89V	I13V, I15V, K20T, E35G, M36I, N37S, R57K, I62V, L63Q, A71V, T74S, V77I, I93L	B
	06941A	06941A	GU581804	PI	NA	D30N	N88D	L19I, L63Q, C67E, A71T, I72V, V77VI	B
	07528A	07528A	GU581852	PI	NA	M46L, I54M, L90M	L33F, Q58E	L10I, I13IV, G16E, K20R, E34ED, E35DN, M36I, I62V, L63Q, I64V, H69HY, A71AV, I72R, V82I, I93L, C95F	B
	08254A	08254A	GU581901	PI	NA			I13V, L63Q, I64V, E65D, I72IV	B
	08561A	08561A	GU581923	PI	NA			L63Q, I64V	B
	08585A	08585A	GU581924	PI	NA			I13V, I15V, K20R, E35D, M36I, N37D, L63Q, I64V, E65D	B
	09813A	09813A	GU581985	PI	NA			E35D, M36MI, N37NS, L63Q, I64V	B
	09895A	09895A	GU581990	PI	NA			I15V, M36I, L63Q, I64V	B
	10961A	10961A	GU582025	PI	NA			T12I, I62V, L63Q, V77I	B
Jones (2012)	130438	130438	JN669489	PI	NA	M46L, I54V, V82A, L90M		G16GE, K20R, E35D, M36I, R41K, I62IV, L63Q, I64V, A71V, I72V, I93L	B
	147919	147919	JN669702	PI	NA			T12P, K14R, Q18QR, E35D, M36I, L63Q, I64V, H69Q	B
	150413	150413	JN669749	PI	NA	L90M		T12S, I13V, K14R, K20I, L33V, E35D, M36I, N37S, R41K, D60E, I62V, L63Q, I64V, V82I, I93L	B
	155142	155142	JN669833	PI	NA			I13V, N37S, R41K, L63Q, I72V, V77I	B
	156691	156691	JN669870	PI	NA			I13V, N37S, R41K, L63Q, I72V, V77I	B
	162262	162262	JN670033	PI	NA			T12P, K14R, L33V, N37S, L63Q, I64V	B
	170260	170260	JN670216	PI	NA			T12K, L19T, L63Q, I72V, V77I	B
	170638	170638	JN670225	PI	NA			T12S, L19IV, L63Q, I64V	B
	171831	171831	JN670272	PI	NA			T12S, L19T, E21EA, N37S, R41K, L63Q, I64V	B
	177498	177498	JN670447	PI	NA			I13V, N37S, R41K, L63Q, I64V, I72V, V77I	B
	181228	181228	JN670569	PI	NA	I54V, V82F	L33LI, K43T	L10I, I13V, E35D, M36I, D60E, L63Q, I64V	B
	185405	185405	JN670704	PI	NA			E35D, N37S, R41RK, L63Q, I64V	B
	185808	185808	JN670707	PI	NA			T12P, L19S, L63Q, I64V, E65D, K70R, V77I, I93L	B
	186497	186497	JN670714	PI	NA			L10V, I15V, E35D, N37H, R41K, L63Q	B
	186764	186764	JN670719	PI	NA			T12N, L19IM, L63Q, I64V	B
	190303	190303	JN670793	PI	NA	M46IL, V82A	L24I	L10I, M36MI, R41RK, R57RK, I62V, L63Q, I64V, T74S, I93L	B
	195597	195597	JN670987	PI	NA	L90M		L10I, T12I, I13V, Q18H, E35D, M36I, N37D, R41K, R57K, D60E, Q61N, L63Q, I64V, C67S	B
	197103	197103	JN671059	PI	NA	D30N		L10IV, I13V, E35D, M36I, L63Q, I64V	B
	199283	199283	JN671160	PI	NA			K20R, M36I, N37D, R57K, L63Q, I64V, E65D, K70R	B
	199740	199740	JN671181	PI	NA			T12P, I13V, L19IT, L63Q, I64V, E65D	B
	201576	201576	JN671229	PI	NA	M46I		I13V, I15V, N37S, P39S, L63Q, I64V, V77I	B
	203347	203347	JN671307	PI	NA			T12S, L19T, I62V, L63Q, I72E, V75I, V77I, I93L	B
	205123	205123	JN671351	PI	NA			T12NS, G16E, L19IV, M36MI, N37S, R57K, I62V, L63Q, I64IL	B
	205597	205597	JN671367	PI	NA			I13V, N37S, R41K, L63Q, I64V, I72V, V77I	B
	206846	206846	JN671412	PI	NA			L10V, I13V, L63Q, I64V	B
	207115	207115	JN671422	PI	NA	V32I, L90M	L33F, M46MV, F53L, N83D, L89V	L10I, I13V, M36V, N37S, R41K, I62IV, L63Q, A71V	B
	207265	207265	JN671427	PI	NA			T4S, G16E, L63Q	B

Protease Inhibitors

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