Protease Inhibitors

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Protease Inhibitors

Subtype	B
Gene	PR
Mutation	L63A
Rx	>= 1 PI
IncludeMixtures	No

References	56
Patients	276
Isolates	333

Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr)	Patient	Isolate	Acc#	PIs	Wks	PIMajorDRMs	PIMinorDRMs	OtherMut	Subtype
Condra (1996)	pt-C	ptCW44		IDV	44	V32I, M46I, V82A		L63A, I64M, A71V, I72V, Q92R	B
Molla (1996)	RTV-313	RTV313W56		RTV	56	V82F		L10V, G16E, L63A, V77I	B
Schapiro (1996)	EV15	EV15_W24	AF013872	SQV	24	G48V		L10I, I13V, D60E, L63A	B
	EV18	EV18_W24	AF013902	SQV	24			I15V, M36I, R41K, I62V, L63A, I93L	B
Craig (1998)	Craig-pt13	13W147		SQV	147			I13V, L63A, V82I	B
Cabana (1999)	Cab-k	K0	AF102323	IDV	36			T12E, I15V, M36I, L63A, I64V	B
		K18	AF102324	IDV, SQV, RTV	72			T12E, I15V, M36I, L63A, I64V	B
Deeks (1999)	SD-18	SD-18	AF124553	IDV	52	M46I, I54V, V82A	L24I	T12P, K14R, L63A, I64V	B
Murphy (1999)	ACTG347_0194	194_PR_w13		APV	12			K14R, R41K, L63A	B
Zolopa (1999)	CA1288	CA3162	AF085116	IDV	56	I54V, V82A	L24I	L10I, E34Q, N37A, R41K, I62V, L63A, A71V, V77I, I93L	B
Atkinson (2000)	BA19	BA19	AF247863	NFV	16	M46I, N88S, L90M		K20X, L63A, T74TS, V77I	B
	BA3	BA3_v1	AF247895	NFV	9			E35D, M36I, N37D, L63A, I72IV	B
		BA3_v2	AF247893	NFV	11			E35D, M36I, N37D, L63A, L97LF	B
		BA3_v3	AF247894	NFV	13			E35D, M36I, N37D, L63A, I72V	B
		BA3_v4	AF247892	NFV	16	D30N		E35D, M36I, N37D, I62IV, L63A, I72V	B
Bacheler (2000)	LB3-P17	P17-2		IDV	2			V11A, N37D, L63A, V77I, I93L	B
		P17-8		IDV	8			N37D, L63A, V77I, I93L	B
		P17-17		IDV	17			N37D, L63A, V77I, I93L	B
		P17-21		IDV	21			N37D, L63A, V77I, I93L	B
	LB3-P66	P66-40		IDV	40			L10V, P39S, R41K, L63A, H69Y	B
		P66-44		IDV	44			L10V, P39S, R41K, L63A, H69Y	B
		P66-48		IDV	48			L10V, P39S, R41K, L63A, H69Y	B
	LB4-P100	P100-56		IDV	19	V32I, M46L, V82A		K55R, L63A, A71V	B
	LB4-P132	P132-49		IDV	26	V32I		L10I, T12I, I13V, G16E, M36I, I62V, L63A, A71V	B
		P132-71		IDV	48	V32I, M46L, V82A		L10I, T12I, I13V, G16E, K20R, M36I, I62V, L63A, A71V	B
Balotta (2000)	CB-165	CB-165	AF251944	SQV, RTV				I15IV, N37D, L63A, E65D, I72V, V77I	B
	CB-166	CB-166	AF252023	SQV, IDV				I15IV, N37D, L63A, E65D, I72V, V77I	B
	CB-185	CB-185	AF251951	PI	NA	M46L, V82A	L24I	L10I, I15V, Q61E, L63A, I64V, I72V, T74S	B
	CB-194	CB-194	AF252040	SQV				L10LI, I13V, I15V, L63A, G68GR, T74S, V77I	B
	CB-267	CB-267	AF252087	IDV, SQV, NFV				L63A, H69N, V77I, N83NH, I93IM	B
Baxter (2000)	GART-G8	GART-8		PI, RTV	NA	I54V, V82A	L33F	L10V, I13V, I15V, G16E, K20R, T31P, M36I, L38LF, I62V, L63A, I72V	B
	GART-NG38	GART-38		PI, IDV	NA	V82A		L10V, K14R, I15V, R41K, K55R, L63A, I72V	B
	GART-NG54	GART-54		PI, SQV	NA	L90M	G73GS	L10V, T12S, I15V, L19I, N37ND, L63A, K70KQ, I72V, V77I, V82VI	B
	GART-G64	GART-64		PI, NFV	NA	M46L, V82A		K20R, M36I, N37D, K55R, I62V, L63A, T74S	B
	GART-G76	GART-76		PI, SQV	NA	L90M		G16GE, I62V, L63A, A71T, V77I, I93L	B
Belec (2000)	par29	par29_m12	AF204348	IDV	52	M46L, V82A		L10I, K14R, L63A, V77I	B
Parkin (2000)	SD-18	SD-18_8	AF294562	IDV, SQV, NFV	60	M46I, I54V, V82A	L24I	T12P, K14R, L63A, I64V	B
		SD-18_12	AF294563	IDV, SQV, NFV	64	M46I, I54V, V82A	L24I	T12P, K14R, L63A, I64V	B
		SD-18_16	AF294564	IDV, SQV, NFV	69	M46I, I54V, V82A	L24I	T12P, K14R, L63A, I64V	B
Sevin (2000)	SA-630081b	SA-630081b	AF226143	SQV	119			L10IV, I15V, G16E, E35D, N37E, I62IV, L63A, A71AT, I72IV, V77I	B
	SA-140857b	SA-140857b	AF226105	SQV	163	G48V, I54IV, V82A	F53FL	L10I, K14R, L19LI, L63A, A71AV, I72V, T74S, V77I	B
Si-Mohamed (2000)	AS_CHO	AS_CHO	AF199256	SQV				T12I, E35D, N37E, R57K, I62V, L63A	B
Brun (2001)	SB-PtD	SB-PtD-BL		IDV		I54V, V82A		L10I, E35D, L63A, A71V, I85V, I93L	B
Cinque (2001)	Pat5	5pla_BL	AF259943	SQV, IDV				I13V, L19I, M36I, Q61N, L63A, C67Y, H69K	B
Delgado (2001)	ED_V4	ED_V4	AY016815	IDV				N37S, L63A	B
	ED_V35	ED_V35	AY016846	RTV				N37S, L63A	B
	ED_V53	ED_V53	AY016864	IDV				I13V, K45R, L63A, I72V, V77I, T96A, L97F, F99L	B
Eshleman (2001)	A038	AF357748	AF357748	NFV	13			E35D, N37H, R41K, I62V, L63A, I93L	B
		AF357806	AF357806	NFV	34			E35D, N37H, R41K, I62V, L63A, I93L	B
	A066	AF357764	AF357764	NFV	12			L63A, V77VI	B
	A106	AF357784	AF357784	NFV	4			N37T, Q61H, L63A, I72V, V77I	B
Gonzales (2001)	CA1161	CA2639	AY030470	SQV, RTV, IDV, NFV	94	I54V, V82VAFS, L90M	F53L	L10I, E34EQ, I62V, L63A, A71V	B
	CA1166	CA2650	AY030474	IDV, NFV	84	L90M		I15L, L19I, K20R, R41K, L63A, A71V, I93L	B
	CA1286	CA3158	AY030506	SQV, NFV	100			G16E, E35D, N37S, I62V, L63A, V77I	B
	CA1322	CA3319	AY030522	SQV, IDV	57			I15V, L63A, V77VI	B
	CA1405	CA3772	AY030550	IDV, NFV	95	M46MI, N88S		L63A, I72V, V77I	B
	CA1480	CA4243	AY030607	IDV, SQV, NFV	82	I84V, L90M	Q58E, G73S	L10I, R41K, I62V, L63A, A71V, I93L	B
	CA1485	CA4253	AY030611	IDV, NFV	70			L10I, K14R, L63A, I72V, V77I, I93L	B
	CA1503	CA4302	AY030629	SQV, IDV, NFV	95	D30N	N88ND	N37NS, K45KR, L63A, V77I	B
	CA1512	CA4329	AY030637	RTV, IDV, SQV, NFV	110	G48V, I54V, V82A, I84V	Q58E	L10I, I62V, L63A, A71V	B
	CH001546	KGXN7145	AY030663	SQV, NFV	99	M46MI, L90M		R41RK, D60E, I62V, L63A, I64M	B
	CA1558	CA4454	AY030674	SQV, RTV	1			R41K, L63A	B
	CA1592	CA4535	AY030690	RTV, IDV	8			K14R, I15V, N37D, L63A, V77I, I93L	B
	CA1826	CA4914	AY030739	IDV, NFV, SQV	82	M46L, G48V, L90LM		N37C, L63A, T74TA, V77I	B
	CA1861	CA4985	AY030765	NFV	74	L90LM		L10LI, E35D, N37S, I62V, L63A, I64IV, T74TS, I93IL	B
	CA1872	CA5005	AY030776	IDV, SQV, NFV	105	M46I, I54V, V82A	L24I	L10I, L63A, I64V	B
	CA2102	CA7757	AY030809	NFV, SQV, RTV	50	G48V, I54V, V82A		N37D, L63A, V77I	B
	CA4029	CA9736	AY031024	IDV	73	M46L, V82A	L24I	I15V, L63A, I64V	B
	CA4043	CA9637	AY031038	SQV, IDV	147			L63A, A71T	B
	CA4079	CA9779	AY031073	IDV	137	V32I, M46L, I47IV, V82A	K43KT	K14R, N37S, R41RK, L63A, A71V, V77I	B
	CA4113	CA9819	AY031103	IDV, NFV	166	M46I, V82T, I84V, L90M	L10F	I3IT, I15V, L19I, K20V, M36I, I62V, L63A, A71V, I85V, I93L	B
	CA4324	CA10722	AY031188	IDV, SQV, RTV, NFV	174	G48V, V82A, L90M		L10I, L63A, A71V, V77I, I93L	B
	CA4463	CA11025	AY031307	SQV, NFV, RTV	67	G48GV, I54IV, V82VA		L10LI, E35D, N37S, L63A	B
	CA4467	CA11032	AY031311	IDV	30			L63A, I93L	B
	CA4730	CA11754	AY031392	NFV	69	M46I, L90LM		T12P, K14R, K20KT, I62V, L63A, G68D, A71V, T74S, V77I, I93L	B
	CA4767	CA11797	AY031427	SQV, IDV, NFV	193			N37D, G49GE, L63A, V77I, I93L	B
	CA5127	CA12699	AY031694	NFV	108	D30N	N88ND	K20R, E35D, M36MI, N37E, I62V, L63A, A71T, I72V, V77I, I93L	B
	CA5608	CA13916	AY032075	PI	NA	I84V, L90M	L10F	E35D, M36V, N37S, I62V, L63A, I64V, T74S, I93L	B
	CA5774	CA14322	AY032164	IDV, NFV	315	M46MI, L90LM	L23LI	I13V, E35D, N37P, L63A, A71V, V77I, I93IM	B
	CA5949	CA14859	AY032198	SQV, RTV, APV	57	I84V, L90M		L10I, I62V, L63A, A71V, I72V, T74A, V77I, I93L	B
	CA5979	CA14901	AY032226	Unknown, NFV, RTV	>52	M46I, I84IV, L90M	F53FL, G73C	L10I, K20R, E35D, M36I, N37D, I62V, L63A, I64V, T74S, V77VI	B
	CA6440	CA16224	AY032393	SQV, RTV	105			L63A	B
	CA6459	CA16238	AY032410	NFV	66	D30N, M46I	N88D	N37D, I62V, L63A, V77I, I93L	B
	CA6487	CA16278	AY032438	IDV, RTV	103	M46ML		R41RK, L63A, A71AV, V77I, I85IV, I93L	B
	CA6584	CA16506	AY032490	NFV	88	D30N	L10LF, N88D	L19I, N37C, I62V, L63A, A71AT, V77I, I93L	B
	CA7116	CA17591	AY032586	NFV, IDV	151			N37NS, L63A, I93IL	B
Kempf (2001)	DK-714	DK-714		IDV	64	V32I, M46I, V82A	L10F	K14R, I15V, L63A, E65D, A71V	B
	DK-7623	DK-7623		IDV	111	I54V, V82A		L10I, E35D, L63A, A71V, I85V, I93L	B
		8242_d660		IDV, LPV	205	M46MIL, I54V, V82A		L10IV, K20KT, E35D, M36MI, L63A, A71V, I93L	B
Servais (2001)	JS22	JS99024	AJ401965	RTV, IDV, SQV	132	I54T, V82A		L10I, E35D, M36I, N37D, L63A, A71V, I93L	B
Brindeiro (2002)	TVSP10	TVSP10	AY145809	RTV	13			N37E, L63A, I72V, V77I	B
Cuevas (2002)	CU97	CU97	AF425478	SQV				G16E, E35D, N37S, I62V, L63A, V77I	B
	CU52	CU52	AF425433	IDV				I13V, I15V, L63A, V77I	B
	CU5	CU5	AF425386	IDV				T12S, L19I, L63A, V77I	B
Maguire (2002)	SW32373	SW32373		APV	48	M46L, I84V		L63A	B
	SW32388	SW32388		APV	48	I50V		N37T, L63A, I64V, V77I, V82I, I93L	B
	SW32495	SW32495		APV	48	V32I, I47V		L63A, G86E	B
Margot (2002)	MM-275836789	2758367891		PI	NA			T12A, L63A	B
	MM-335536593	3355365931		PI	NA	I54V, V82A, L90M	L33F	L10I, K20R, E35D, M36I, N37D, R41K, D60E, I62V, L63A, A71V, I93L	B
	MM-276336663	2763366631		PI	NA	V82A		L10I, I15V, I62V, L63A, I93L	B
	MM-237236768	2372367681		PI	NA	M46L, L76V	L10F	I62V, L63A, K70E, A71V, V77I	B
	MM-245436780	2454367801		PI	NA	G48V, L90M		L10I, L63A, A71T, I93L	B
	MM-211036629	2110366291		PI	NA			E35D, L63A	B
	MM-212136685	2121366851		PI	NA			I13IV, I15V, G16E, K20T, E35D, M36I, R41RK, L63A, I72V, T74TS, V82VI, I93L	B
	MM-426236822	4262368221		PI	NA	I54V, L90M		L10LI, K20MI, E35EG, M36I, R41K, I62V, L63A, A71V, T74S, I93L	B
	MM-273936546	2739365461		PI	NA	M46L, N88S		K20KM, I62V, L63A, A71V, T74S, V77I	B
	MM-210636608	2106366081		PI	NA	G48V, I54V, V82A, L90M	Q58E	L10I, Q18QL, N37D, L63A, A71V, I72V, V77VI, I93L	B
Tural (2002)	140180	140180		IDV, RTV	206	I54A, V82F, L90M	L33F	L10I, I13V, I15V, M36L, L63A, A71V, I93L	B
Venturi (2002)	GV-14	GV-14.1	AF517266	IDV				T12P, K14R, N37S, L63A, I64V	B
Gonzales (2003)	CA1166	CA23703	AY305970	IDV, NFV, SQV, RTV, LPV	240			I15L, L19I, K20R, R41K, L63A, A71V, I93L	B
	CA4767	CA23524	AY305997	SQV, IDV, NFV, LPV	258			N37E, L63A, I72V, V77I, I93L	B
Monno (2003)	ML_Pat4	ML_Pat4		PI	NA			L63A, V77I	B
	ML_Pat6	ML_Pat6		PI	NA			N37D, L63A, I64V, V77I	B
	ML_Pat53	ML_Pat53		PI	NA	M46I, I54L		L10V, E35D, N37H, I62IV, L63A, I64V, T74S, V77I	B
	ML_Pat54	ML_Pat54		PI	NA	L90M		L10V, I15V, E35D, N37H, R41K, I62V, L63A, A71V, I93L	B
	ML_Pat55	ML_Pat55		PI	NA	G48V, I54T, V82A		L10I, L19I, I62V, L63A, C67E, H69R, A71V, I72IV	B
	ML_Pat73	ML_Pat73		PI	NA	I84V, L90M	L10YFIN, G73S	R57RK, I62IV, L63A, A71V, V77VI	B
	ML_Pat76	ML_Pat76		PI	NA	G48V, I54IV, V82A, I84IV		L10VI, L19V, N37TP, L63A, H69K, A71AV, T74S, V77VI	B
Saah (2003)	AS-23	AS-23		NFV	56	M46I	N88D	L10I, N37S, D60E, I62V, L63A, V77I, I93L	B
Shafer (2003)	A384_1820	1820b	EF548434	NFV	83			I13IV, M36I, L63A	B
	A384_3616	3616b	EF548806	NFV	32	D30N	L76LI, N88D	L10I, K14KM, L63A, A71AV, G73GV, V77I, I93L	B
	A384_0372	0372b	EF548942	NFV	8			I62V, L63A, V77I, I93L	B
		0372c		NFV, Unknown	>8			I62V, L63A, V77I, I93L	B
	A384_0811	0811b	EF549081	NFV	28	D30N		E35D, M36MI, N37T, I62V, L63A, V77I	B
		0811c	EF549082	NFV	28			E35D, N37T, R57K, L63A, V77I	B
	A384_5780	5780b	EF549341	NFV	3			R41K, L63A	B
	A384_5793	5793b	EF549346	NFV	59			T12N, I15V, L19I, E35D, N37ND, R41RK, D60E, L63A	B
	A384_5929	5929b	EF549350	NFV	51	D30N, M46MI		N37A, R41K, I62V, L63A, V77I, I93L	B
	A384_3009	3009b	EF548985	NFV	35			R41K, L63A	B
	A384_3763	3763b		NFV	46	I54L		L63A, V77I	B
		3763c	EF549068	NFV	46	I54L		L63A, V77I	B
Vergne (2003)	VL00SN101hald	99SN101	AJ583709	IDV				L63A, Q92H	B
		00SN101	AJ583740	IDV				N37D, L63A	B
Wu (2003)	CA1288	CA12053	AF544455	IDV, SQV, RTV	166	I54V, I84V	L24I, G73GC	L10I, E34Q, N37A, R41K, I62V, L63A, A71V, V77I, I93L	B
	CA1405	CA10744	AF544467	IDV, NFV, SQV	157	M46ML, N88S		Q2Q*, L63A, I72V, V77I	B
	CA1480	CA9765	AF544486	IDV, SQV, NFV, RTV	126	M46I, I84V, L90M	F53FL, Q58E, T74P	L10I, K20M, E35ED, M36I, R41K, K55R, I62V, L63A, A71V, I93L	B
	CA1592	CA9703	AF544504	RTV, IDV, NFV	35	M46I, N88S		K14KR, I15IV, N37D, I62V, L63A, V77I, I93L	B
	CA2102	CA8451	AF544526	NFV, SQV, RTV	64	G48V, I54V, V82A		N37D, L63A, V77I	B
	CA4463	CA20518	AF544563	SQV, NFV, RTV, APV, IDV	142	G48V, I50V, I54V, V82T		L10I, E35D, M36I, I62V, L63A, A71V	B
	CA4767	CA13969	AF544570	SQV, IDV, NFV	193			N37E, L63A, I72IV, V77I, I93L	B
Dumans (2004)	273	273	AY390057	RTV	177	M46L, V82A, I84V	L24I, L33F	L10I, I13V, E34Q, I62V, L63A, V77I	B
Gomez-Carrillo (2004)	91938	91938	AY365472	PI	NA			M36MI, I62V, L63A	B
	98722	98722	AY365579	PI	NA	D30N	N88D	I15V, K20T, E35D, M36V, I62V, L63A, A71V, I72A, V77I, I93L	B
	104252	104252	AY365696	PI	NA			M36L, N37S, I62V, L63A	B
	104432	104432	AY365702	PI	NA			E35D, M36I, R57K, I62V, L63A, A71V, I93L	B
	104462	104462	AY365705	PI	NA			I13V, I15V, E35D, M36I, I62V, L63A, K70R, I72L	B
	104827	104827	AY365713	PI	NA	D30N	N88D	L10V, L63A, A71V, V77I, I93L	B
	108295	108295	AY365784	PI	NA			I13V, L63A	B
	109475	109475	AY365817	PI	NA	V32I, M46I, V82A		N37I, L63A, A71V, V77I	B
	110725	110725	AY365844	PI	NA			I15IV, M36L, N37S, I62V, L63A	B
	114293	114293	AY365894	PI	NA	M46L, L90LM	L10F	I13V, I15V, G16Q, K20T, P39S, L63A, I64V, T74AS, V77I	B
	114368	114368	AY365902	PI	NA	M46L, G48V, I50V, I54V, V82A	L33F, K43T	L10I, T12I, I13V, L63A, H69Y, K70E, A71V, I72V, V77I, P79PS, I93L	B
	123807	123807	AY366025	PI	NA			N37S, R57K, L63A, I72V, V77I	B
Gulick (2004)	RG423	RG423w155		ATV	52			I15V, E35D, N37S, R41K, L63A	B
Machado (2004)	con55	con55	AY313329	RTV, NFV	40			N37S, L63A, C95S	B
Montes (2004)	MB_patFER	99_FER709	AJ577888	SQV, IDV, RTV	52			K14R, L19I, N37D, L63A, A71T, I72V, V77I	B
Rhee (2004)	NP-P18	NP-P18		Unknown, IDV, SQV, NFV	NA	M46I, I54V, V82A	L24I	T12P, L63A	B
Mo (2005)	9004	9004_d1		PI	NA			T12TA, L63A	B
		9004_d337		PI, LPV	NA			L63A	B
Rhee (2005)	CA1161	CA4883	AY796539	SQV, RTV, IDV, NFV	94	I54V, V82A, L90M	K43KT, F53FL	L10I, E34Q, I62V, L63A, A71V, T74S	B
		CA23194	AY796540	SQV, RTV, IDV, NFV, APV, LPV	254	V32I, M46I, I47V, I54L, I84V, L90M	L33F, K43T, F53L, T74P	E34Q, M36L, I62V, L63A, A71V, I93L	B
	CA1166	CA20382	AY351709	IDV, NFV, SQV, RTV	182	L90M		I15L, L19I, K20R, R41K, L63A, A71V, I93L	B
		CA23701	AY796544	IDV, NFV, SQV, RTV, LPV	232			I15L, L19I, K20R, R41K, L63A, A71V, I93L	B
	CA1286	CA16053	AY796598	SQV, NFV	161			G16E, E35D, N37S, I62V, L63A, V77I	B
	CA1288	CA4202	AY796599	IDV, SQV, RTV	69			N37A, R41K, I62V, L63A, A71V, V77I, I93L	B
		CA7501	AY796600	IDV, SQV, RTV	108	I54IV, V82VA	L24LI	L10LI, E34EQ, N37A, R41K, R57RK, I62IV, L63A, A71V, V77I, I93L	B
		CA42699	AY796601	IDV, SQV, RTV, Unknown	>166			N37A, R41K, I62IV, L63A, A71AV, V77I, I93L, L97LI	B
	CA1322	CA9621	AY796620	SQV, IDV, RTV	99			I15V, L63A	B
		CA17529	AY796621	SQV, IDV, RTV	108			I15V, R41RK, L63A, V77VI	B
		CA33721	AY796622	SQV, IDV, RTV, Unknown	>108			I15V, L63A, I72IT, V77VI	B
	CA1405	CA9783	AY796654	IDV, NFV, SQV	151	M46ML, N88S		L63A, I72V, V77I	B
	CA1436	CA12588	AY796682	NFV	57	D30N	N88D	R41K, I62IV, L63A, I64IM, A71AT, V77I	B
	CA1485	CA37813	AY796717	IDV, NFV, SQV	305			L10I, K14R, L63A, I72V, V77I, I93L	B
	CA1503	CA13941	AY796744	SQV, IDV, NFV	124	D30N	L33LF, N88D	I13IV, L63A, A71V, V77I, I93L	B
	CH001546	CA38116	AY796771	SQV, NFV, RTV, IDV, LPV	211	M46MI, L90M	L10LF	R41K, D60DE, I62V, L63A, I64M	B
	CA1585	CA24510	AY796788	SQV, NFV, IDV, RTV, APV, LPV	223			L10I, G16E, E35D, M36I, N37NS, R57K, L63A, I93L	B
	CA1592	CA23610	AY796793	RTV, IDV, NFV	39			K14R, I15V, N37D, L63A, V77I, I93L	B
		CA34241	AY796794	RTV, IDV, NFV	39			K14R, I15V, N37D, L63A, V77I, I93L	B
		CA41224	AY796795	RTV, IDV, NFV	39			K14R, I15V, N37D, I62IV, L63A, V77VI, I93L	B
	CA1872	CA24705	AY796853	IDV, SQV, NFV, RTV, APV	248	M46I, I54IV, V82A	L24I, F53FL	L10I, L63A, I64V	B
	CA3902	CA33432	AY796941	SQV, NFV	156	D30DN, L90LM		I15V, L63A, V77I	B
		CA38098	AY798424	SQV, NFV, APV, LPV	231	L90M	M46MV	I13V, I15V, L63A, V77I	B
	CA4067	CA41314	AY797006	NFV, Unknown	NA			N37D, K43R, I62V, L63A, A71T, T74A, V77I, I93L	B
	CA4152	CA33463	AY797024	IDV	148			M36I, L63A, I72V	B
	CA4450	CA16232	AY797096	IDV, NFV	84	D30N, M46ML	L33LF	I62V, L63A	B
	CA4463	CA12974	AY797104	SQV, NFV, RTV, APV	87	G48V, I50V, I54V, V82A		L10I, E35D, M36I, I62V, L63A, A71V	B
	CA4572	CA21266	AY797128	NFV, SQV, RTV	70			L10I, E35D, N37E, I62IV, L63A, A71T	B
		CA34141	AY797129	NFV, SQV, RTV, LPV	160			L10I, E35D, N37DE, L63A, A71T	B
	CA4730	CA33773	AY797133	NFV	222	M46I, L90M		T12P, K14R, K20I, I62V, L63A, G68D, A71V, T74S, V77I, I93L	B
		CA37940	AY797134	NFV	283	M46I, L90M		L10LI, T12P, K14R, K20I, I62V, L63A, G68D, A71V, T74S, V77I, I93L	B
	CA5004	CA48139	AY797203	NFV, SQV, RTV, APV, LPV	104			L10I, I62V, L63A, G68E, A71V, V77I, I93L	B
	CA6584	CA23883	AY797429	NFV	109			N37C, L63A, V77I, I93L	B
	CA7963	CA20433	AY797614	RTV, IDV, SQV, NFV	242	M46I, V82F, L90M	K43T	R8R*, L63A, A71T, V77I	B
	CA8441	CA21419	AY797762	NFV	76			I13V, G16E, M36MI, K45R, L63A	B
	CA9665	CA23606	AY797788	IDV, NFV	174	V32I, M46I, V82A	K43T	L10I, K20R, E35D, M36MI, N37ND, R41K, L63A, H69Q, A71V	B
	CA9682	CA23688	AY797801	NFV	198	D30N	N88D	I13V, E35D, M36I, L63A, A71V, V77I	B
	CA9774	CA23999	AY797849	IDV	278	M46ML, I54V, V82A	L24I	L10I, I62V, L63A, A71V	B
	CA9807	CA24091	AY797868	NFV	190	D30N		G16E, E35D, M36I, I62V, L63A, I64V, K70KR, V75I	B
		CA33538	AY797869	NFV	221	D30N	L10LF	I13IV, G16E, K20KR, E35D, M36I, I62V, L63A, I64V, K70KR, V75I	B
	SWC-5573	5573-2100		Unknown, NFV	>89	D30N, M46I	N88D	L10V, I13V, I15V, L63A, F99X	B
	CA14171	CA33277	AY797994	RTV, APV	63			I15V, N37S, R41K, L63A	B
	CA14227	CA33356	AY798014	LPV	12		L33F	I13V, N37S, P39S, L63A, I72IV, V77I, L89M	B
		CA33720	AY798015	LPV	30		L33F	I13V, N37S, P39S, L63A, I72IV, V77I, L89M	B
	CA14420	CA33690	AY798078	NFV	110	D30N	N88D	I13V, N37NS, I62IV, L63A, A71AV, V77I	B
	CA16426	CA39012	AY798251	PI	NA	M46L, I84V	Q58E	L10Y, R41RK, L63A, T74K, L89M	B
	CA16436	CA39054	AY798252	IDV	207	M46L, V82VA	L10FV	N37S, L63A, I93L	B
	CA18383	CA42913	AY798295	IDV	375	L90M	Q58E	L10I, E35G, M36I, I62V, L63A, I93L, C95F	B
	CA18428	CA43003	AY798304	IDV	441	V32I, M46MI, I47V		I3IN, L10I, I62V, L63A, A71T, V77I, I85V, Q92K, I93L	B
Baxter (2006)	12-1428	1428-30313	DQ876014	PI	NA	M46I, I84V, L90M		L10I, I13V, K20I, M36I, Q61N, L63A, I64L, I93L	B
	12-1251	1251-30320	DQ876081	PI	NA	M46L, I54V, V82T, I84V		L10I, N37ND, R41RK, K55KR, I62V, L63A, I66F, A71V, T74S, V77I	B
	12-1816	1816-30513	DQ876082	PI	NA	M46I, I54V, V82A, I84V	Q58E	L10V, K14R, I15V, K20R, D60E, L63A, A71V, I93L	B
	12-4031	4031-30219	DQ876144	PI	NA	G48V, I54ST, V82A	K43T	L10I, I15IV, L19T, K20R, E35D, M36I, D60E, I62IV, L63A, A71V, I93L	B
	12-1020	1020-30317	DQ876258	PI	NA	V32I, M46L, I47V, G48L, I54M, V82A	L24I, L33F, F53L, Q58E	L10V, I13V, L63A, I72EV, T74S, V77I, L89M	B
	12-2479	2479-30819	DQ876299	PI	NA			I15V, L63A, H69Q	B
	12-1040	1040-30709	DQ876303	PI	NA	V82VA, I84IV	V11VI	L10IV, I15V, K20KR, M36I, L63A	B
	12-2114	2114-30623	DQ876391	PI	NA	M46I, I54V, L90M		L10V, R41K, L63A, A71V, V77I, I93L	B
	12-1922	1922-30717	DQ876484	PI	NA			E35D, N37NS, L63A	B
	12-1936	1936-30819	DQ876494	PI	NA			L63A	B
	12-1363	1363-30714	DQ876502	PI	NA			L63A, E65ED, I72IV, V77VI	B
	12-1836	1836-30710	DQ876587	PI	NA	M46I, G48V, I54T, V82S	K43KT	L10I, K20R, E35D, M36I, N37E, I62V, L63A, A71V, T74S, V77I, I93L	B
	12-2181	2181-30722	DQ876630	PI	NA	M46MIV, G48V, V82A, I84V		L10I, L63A, A71T, V77I	B
	12-1538	1538-30616	DQ876654	PI	NA	V32I, M46I, I47V, I54M, V82A, L90M	L10F, L33F, K43T	I13V, E34Q, N37E, L63A, A71V, V77I	B
	12-1857	1857-30527	DQ876669	PI	NA	I54L, I84V	L33F	L10I, I13V, N37S, I62V, L63A, T74S, V77I, L89M, I93L	B
	12-1617	1617-30821	DQ876721	PI	NA	M46I, L90M	G73S	L10IV, I62V, L63A, A71V, V77I, I93L	B
	12-1405	1405-30501	DQ876788	PI	NA	M46MI, I54IV, I84V, L90M	L10F, K43T	L19I, K20R, E35D, M36I, D60E, I62V, L63A	B
	12-2157	2157-30619	DQ876821	PI	NA	V32I, M46I, I47V, G48GS, I54M, V82A, L90LM	L33F, K43T, F53L	L10I, G16E, E34Q, D60E, L63A, A71V, V77I, I93L	B
	12-1438	1438-30811	DQ876835	PI	NA	V32I, M46I, I47V, I54A, V82A, L90M	L33F, K43T, Q58E, L89V	L10I, I13V, I15V, R41K, D60K, I62V, L63A, A71V	B
	12-1494	1494-30515	DQ876890	PI	NA	D30N	L10LF, N88D	I13IV, E35D, M36I, I62V, L63A, I64IV, A71AT	B
	12-1916	1916-30519	DQ876906	PI	NA			K14R, G16E, I62V, L63A, I72V, V77I	B
	12-2056	2056-30616	DQ876920	PI	NA	M46I, G48V, I54S, V82A	L33LF	L10IV, R41K, L63A, A71V, V77I, T91A	B
	12-2180	2180-30721	DQ876926	PI	NA			E35D, M36I, N37DE, I62IV, L63A, I72V	B
	12-1180	1180-30611	DQ876948	PI	NA	V32I, M46I		L10V, I15V, K20R, M36I, N37S, P39Q, R41K, I62V, L63A, V82VI	B
	12-1239	1239-30512	DQ877021	PI	NA			W6C, Q7E, L63A	B
	12-1855	1855-30512	DQ877050	PI	NA			L10I, I62V, L63A, V77I, I93L	B
	12-1567	1567-30227	DQ877066	PI	NA			L19V, M36I, N37D, L63A	B
	12-1260	1260-30318	DQ877128	PI	NA	M46L, I54V, L76V, V82A	L23I, Q58E	L10IV, I15V, G16GA, L63A, A71V, I93L	B
	48-1825	1825-30924	DQ877431	PI	NA	L90M		K20M, E35D, M36V, R57K, I62IV, L63A, A71V, I93L	B
	48-1868	1868-30924	DQ877461	PI	NA	L90M		M36I, Q61H, L63A	B
	48-2243	2243-30722	DQ877882	PI	NA	M46I, I54V, V82A	L10F	E35D, N37S, R41K, R57K, L63A, I64V, I72V	B
	48-2602	2602-30415	DQ877895	PI	NA	M46I, I54V, L76V, V82A, L90M	L10F, L33F	I13V, R41K, Q61H, I62V, L63A, H69Q, A71V, V77I, I93L	B
	48-3098	3098-30415	DQ878005	PI	NA	M46I, I54IV, V82A, I84V	L10F, L24I, K43T, F53FL	K20R, E35D, M36I, N37D, I62V, L63A, I64V, I72V, T74S	B
	48-3113	3113-30407	DQ878021	PI	NA	M46IL, I54M, V82A, I84V	Q58E	L10I, L19LI, K20KR, E35D, M36I, I62V, L63A, A71V	B
	48-3143	3143-30430	DQ878054	PI	NA	M46I, G48V, I54S, V82C, L90M		T4TS, L10V, R41K, I62V, L63A, I64V, A71V, I72V, V77I, I93L	B
	48-3327	3327-30917	DQ878223	PI	NA	M46I		L10LV, I13IV, L19I, I62IV, L63A, I64IV, T74K, V77I, I93L	B
	48-4038	4038-30313	DQ878272	PI	NA			L63A, I72V	B
	48-4284	4284-30721	DQ878507	PI	NA			N37D, L63A, I64V, E65D	B
	48-4322	4322-30929	DQ878530	PI	NA	M46I, I54V, I84A	Q58E	L10I, K20R, E35D, M36I, R41K, I62V, L63A, A71V, I72V, V82I, I93L	B
	48-5036	5036-30723	DQ878562	PI	NA		Q58E	L10I, E35DN, N37D, P39PS, R41K, R57RK, D60E, I62V, L63A, A71T, P79PS	B
	48-6007	6007-30226	DQ878603	PI	NA	M46L, I54V, V82A, I84V, L90M	L33F, K43T	L10I, I13V, I15V, K20R, L24F, E35D, M36I, N37D, R57K, Q61N, I62V, L63A, A71V, Q92K	B
	48-6138	6138-30626	DQ878719	PI	NA	M46MI, G48V, I50V, I54A, V82A		L10I, N37ND, F53FY, R57K, I62V, L63A, I64M, A71V, I72IV, I93L	B
	48-6148	6148-30826	DQ878724	PI	NA	M46L, I54V, V82A, L90M	L33F	L10V, L19I, N37D, L63A, H69K, A71I, V77VI, I93L	B
	48-7027	7027-30819	DQ878911	PI	NA			T12N, L63A	B
	48-7086	7086-30612	DQ878940	PI	NA	I54V, V82A, L90M	L33F, K43T, F53L, T74P	L10V, I13V, K20R, E35D, M36I, N37E, K55R, R57K, I62V, L63A, A71V, I72V, V77I, T91S	B
	48-9069	9069-30827	DQ877483	PI	NA			L63A, V77I	B
	48-9246	9246-30922	DQ877544	PI	NA	D30DN, V32I, I47V, I54M, V82A	L33LF, M46V	L10I, E34Q, L63A, A71I, V77I	B
	48-9003	9003-30922	DQ877667	PI	NA	G48V, I54A, V82S		L10I, I62V, L63A, A71V, T74S, V77I, I93L	B
	48-9108	9108-30915	DQ877694	PI	NA	D30N	N88D	R8Q, I13V, L19I, L38LF, L63A, H69Y, A71V, V77I	B
	48-8015	8015-30819	DQ879060	PI	NA	M46L, I54V, V82A, L90M	Q58E	L10I, I15V, K20M, I62V, L63A, I64IV, A71V, I93L	B
	48-8029	8029-30509	DQ879067	PI	NA	M46I, I47V, I54V, V82A, L90M	V32L, L89V	L10I, I15V, K20R, E35D, N37T, R41K, K55R, R57K, Q61N, L63A, A71V, I85IV, Q92K	B
Mo (2006)	HM_V11	HM_V11		SQV, RTV		M46I, I54V, I84V		L10I, K20T, L63A, A71T, V77I	B
Rhee (2006)	CA7877	CA20311		IDV, NFV	230	I54V, V82F, L90M		L10I, I15V, L19I, R57K, L63A, I66L, A71V, I93L	B
Santos (2006)	012	012PR_RT	AY275721	RTV, IDV	82			I15V, M36I, L63A	B
	079	079PR_RT	AY275751	NFV	178			K14R, I15V, L19I, L63A, V77I	B
von Wyl (2007)	11	1431657	EF449963	PI	NA	M46I, I84V		L10I, I13V, K20KT, L63A, I64V, I66F, V77I	B
	50	4821975	EF449797	PI	NA	M46MI, N88NS		L10I, I15V, I62IV, L63A, I93IL	B
Riddler (2008)	RG44888	RG44888w43		LPV	43			I15V, M36I, I62V, L63A, I64V, V82I	B
	RG46205	RG46205w36		LPV, ATV	18			L63A, A71T, I72E, V77I	B
	RG48271	RG48271w12		LPV	12			Q18L, N37S, R41K, I62V, L63A, I64L, A71T, V77I, I93L	B
	RG56208	RG56208w11		LPV	11			L19I, I62V, L63A, H69Q	B
	RG69840	RG69840w20		LPV	13			V11F, I13IL, L63A	B
	RG79556	RG79556w14		LPV, RTV, IDV	12			E35D, M36I, R57K, L63A, I72IT	B
	RG83898	RG83898w31		LPV	31			G16E, P39S, R41K, I62K, L63A, I93L	B
	RG9439	RG9439w15		LPV	15			L19LI, A22AP, N37S, L63A	B
Rosen-Zvi (2008)	54	09p54-2		SQV, NFV, RTV, IDV, LPV	510			I15V, E35D, N37S, L63A	B
Cardoso (2009)	3025	BRGO3025	FJ638425	PI	NA			T12IM, I13V, I15IV, M36I, N37E, I62V, L63A, I72V	B
	3067	BRGO3067	FJ638434	PI	NA			L19I, E35ED, N37NS, L63A, I72V	B
Rhee (2009)	CA9724	CA23829	FJ983319	RTV, APV	43			E35D, N37Y, R41K, I62V, L63A, A71T, V77I, I93L	B
	CA21042	CA48397	FJ983476	NFV, LPV	173	M46I, I54V, V82A	L10F	N37S, R41K, L63A	B
	CA21088	CA48489	FJ983486	IDV	57			I15IV, E35D, N37T, L63A	B
Dau (2010)	05122A	05122A	GU581657	PI	NA	I84IV	L10F	G17E, K20T, E35G, M36I, Q61N, L63A	B
	05503A	05503A	GU581666	PI	NA			I62V, L63A, A71T, V77I	B
	07426A	07426A	GU581845	PI	NA	G48V, I54V, V82A	Q58E	L10I, I15IV, G16A, K20KM, E35D, M36I, N37D, I62V, L63A, Q92A	B
	08472A	08472A	GU581915	PI	NA	I54IV		L10V, I15V, E35D, M36I, I62V, L63A, L89M	B
	08484A	08484A	GU581916	PI	NA	M46I, L90LM		L63A, V77I, I93L	B
	08790A	08790A	GU581947	PI	NA			T12S, L19Q, L63A	B
	09442A	09442A	GU581968	PI	NA			G16E, P39S, L63A, V77I	B
	09872A	09872A	GU581987	PI	NA			I15V, L63A, K70KR, A71AT, I72EV, V77I, I93L	B
	09894B	09894B	GU581989	PI	NA			N37S, L63A	B
	10545A	10545A	GU582008	PI	NA			I15V, G16E, I62V, L63A, V77I	B
	10870A	10870A	GU582023	PI	NA			E35D, N37D, L63A	B
Hamkar (2010)	32	Ir-HIV-DR-32	GU724835	PI	NA	M46I, I54V, I84A	Q58E	L10I, K20R, E35D, M36I, R41K, I62V, L63A, A71V, I72V, V82I, I93L	B
Knops (2010)	ID2117	ID2117-GT1	GU271170	LPV	52			E35ED, N37NS, L63A, I64IV, E65ED	B
		ID2117-GT2	GU271171	LPV	209	M46MI, L76LV		T12P, I13V, K14R, G16E, K20KT, E35D, L63A, I64V, E65D	B
	ID2159	ID2159-GT1	GU271174	SQV, NFV, IDV, TPV, APV, LPV		M46I, I54V, I84A	Q58E	L10I, K20R, E35D, M36I, R41K, I62V, L63A, A71V, I72V, V82I, I93L	B
Jones (2012)	127370	127370	JN669436	PI	NA			I62M, L63A, A71V, V77I	B
	127722	127722	JN669443	PI	NA			K14R, I15V, G16E, N37S, I62V, L63A, I72V	B
	129274	129274	JN669463	PI	NA			L10V, T12TI, I13V, N37D, L63A	B
	130777	130777	JN669495	PI	NA	M46L	L10F	I13V, I15V, G16Q, K20T, P39S, L63A, I64V, I72V, T74A, V77I	B
	132555	132555	JN669512	PI	NA			L19I, L63A, A71V, I72M, V77I, P79S, I93L	B
	140905	140905	JN669594	PI	NA			L63A	B
	142745	142745	JN669623	PI	NA			M36MI, L63A, I64IV, I93L	B
	147705	147705	JN669697	PI	NA	M46L, I54V, V82A, L90M	F53FL	L10I, K20R, E35D, M36I, N37ND, R41K, R57K, Q61N, L63A, A71V, L89M, I93L	B
	151379	151379	JN669762	PI	NA			N37S, L63A, V77I, N98NFIY	B
	156323	156323	JN669861	PI	NA			Q61E, I62V, L63A, E65D, A71T, V77I, I93L	B
	157775	157775	JN669900	PI	NA	M46I, I84V, L90M	G73ST	N37S, L63A, A71V, V77I, I93L	B
	159357	159357	JN669951	PI	NA	M46I, V82VA		I15V, G16A, K20I, I62V, L63A, K70T	B
	163358	163358	JN670064	PI	NA	I54IV, V82VA		L10I, I15IV, E35D, M36I, I62V, L63A	B
	168158	168158	JN670169	PI	NA	M46MIL, I54V, V82VA, I84V	L24LI, Q58E	L10LI, K20IM, N37ND, I62IV, L63A, A71AV, T74K, V77I	B
	170639	170639	JN670226	PI	NA	M46L, G48V, I50V, I54AV, V82A	L33F, K43T	L10I, T12I, I13V, R57RK, L63A, H69Y, K70E, A71V, I72V, V77I, P79PS, I93L	B
	172418	172418	JN670288	PI	NA			T12N, N37S, R57K, Q61N, L63A, I72T	B
	172493	172493	JN670291	PI	NA	M46I, I54V, V82A	L24I, Q58E	L10I, K20R, E35D, M36I, N37D, I62V, L63A, I64V, T74R	B
	178938	178938	JN670493	PI	NA			N37D, L63A	B
	179865	179865	JN670529	PI	NA	M46L, G48S, I54V, V82A, L90M	F53L	L10I, G17GE, K20R, E35D, M36I, N37D, R41K, R57K, Q61DN, L63A, A71V, T74S, L89M, I93L	B
	183364	183364	JN670644	PI	NA		V11VI	L10IV, K14KR, I15IV, M36I, N37E, R57K, Q61N, L63A, C67CR, I93L	B
	184703	184703	JN670686	PI	NA			L10I, E21A, E35D, N37S, I62V, L63A, I93L	B
	185057	185057	JN670696	PI	NA	M46I, I84V, L90M	L10F, G73T	N37S, L63A, A71V, V77I, I93L	B
	186978	186978	JN670726	PI	NA			L63A, A71T, V77I, I93L	B
	190495	190495	JN670799	PI	NA			L10I, N37D, K43R, R57K, Q61N, L63A, I64M, I72V, I93L	B
	191106	191106	JN670810	PI	NA		L24LI	L10LI, G16GE, K20KR, E35ED, M36MI, R41K, L63A	B
	191352	191352	JN670822	PI	NA	M46I, I50IL, V82T	L24I, K43T	L10I, K20I, E35D, M36I, N37S, K55R, L63A, I64V, A71AV, T74TR	B
	194217	194217	JN670928	PI	NA		V11VI	T12N, I15V, G16E, L19V, E35D, L63A	B
	194550	194550	JN670940	PI	NA			I15V, R41K, K45R, L63A, H69HY, V77I, I93L	B
	194684	194684	JN670948	PI	NA			N37D, K43R, R57K, Q61N, L63A, E65D	B
	195155	195155	JN670966	PI	NA	D30N		E35D, M36V, K45R, I62V, L63A, A71T, V77I, L89I	B
	196719	196719	JN671037	PI	NA			I15V, E35D, I62V, L63A, E65D	B
	196854	196854	JN671041	PI	NA			L10LV, I15V, N37S, R41K, L63A, E65D, K70R	B
	197102	197102	JN671058	PI	NA			N37D, L63A	B
	201100	201100	JN671213	PI	NA			M36I, L63A	B
	201835	201835	JN671237	PI	NA	M46I, I54V, V82A	L10F	I15V, G16A, K20I, M36MI, I62V, L63A, K70T	B
	202202	202202	JN671262	PI	NA			L63A	B
	202391	202391	JN671271	PI	NA			I15V, N37S, R41K, L63A, E65ED, K70R	B
	205968	205968	JN671380	PI	NA	M46L, G48V, I50V, I54A, V82A	L33F, K43T	L10I, T12I, I13V, L63A, H69Y, K70E, A71V, I72V, V77I, I93L	B
	206244	206244	JN671395	PI	NA	M46I, I54V, V82A	L33F	L10V, L19I, N37D, R41K, I62V, L63A, L89LM	B

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