<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Protease Inhibitors

Subtype A
Gene PR
Mutation L63T
Rx PI-naive
IncludeMixtures No
References 125
Patients 311
Isolates 312
 
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Sequences matching input query are shown below. Original reference, patient identifier, isolate name, partial treatment histories and accession number are indicated. Complete treatment histories, when available, can be accessed by clicking the isolate name. Sequences may additionally be downloaded in the fasta format, or viewed as individual or composite alignments using the options above. If the user wishes to view individual alignments of isolates for which there are multiple clones, the user can choose to view either an alignment of consensus sequences derived from the clones or an alignment of each clone as well as a consensus sequence.

Author (yr) Patient Isolate Acc# PIs WksPIMajorDRMs PIMinorDRMs OtherMutSubtype
Becker-Pergola (2000)129.733BPG129-733AF177347None   I13V, K14R, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
Eshleman (2001)SE65SE65AF388068None   I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
Weidle (2001)PW_UG4399PW_UG4399AF358749None   L10I, I13V, K20R, E35D, M36I, R41K, R57K, L63T, C67Y, H69K, L89MA
Fonjungo (2002)CAM63CAM63AF252133None   I13V, G16E, E35D, M36I, R41K, L63T, G68E, H69K, K70R, L89M, T91V, I93LA
Pandrea (2002)IP_97CIRMF5897CIRMF58AY140641None   I13V, K20R, E35D, M36I, N37D, R41K, L63T, I64M, H69K, I72T, L89MA
Eshleman (2004)ESH_Pat105ESH507AY435351None   E35D, M36I, R41K, R57RK, I62V, L63T, H69K, T74A, L89MA
Snoeck (2004)BE53BE53AY900753None   I13V, K14R, E35D, M36I, N37E, R41K, R57K, L63T, H69K, L89M, F99LA
Yang (2004)99KE43299KE432AY492765None   I13V, I15V, E35D, M36I, N37D, R41K, R57K, L63T, H69K, K70R, L89MA
Carr (2005)03UZ02003UZ020AY845754None   I13V, G16GE, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
Ciccozzi (2005)MC_AY611697A65AY611697None   L10I, I13V, G16E, E35D, M36I, R41K, L63T, H69K, L89MA
 MC_AY611711A24AY611711None   L10I, I13V, G16E, E35D, M36I, R41K, L63T, H69K, L89M, T96PA
K'Aluoch (2005)OK_TC022504TC022504DQ079830None   L10LI, I13V, K14R, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 OK_TC010603TC010603DQ079844None   K14R, E35D, M36I, N37E, R41K, R57K, L63T, E65D, H69K, L89MA
Non-B Workgroup (2005)TK5001TK5001 None   L10I, I13V, K14R, E35D, M36I, R41K, R57K, L63T, H69K, V82I, L89MA
Weber (2005)F56326F56326AY677438None   L10I, I13V, G16E, M36I, R41K, L63T, H69K, L89MA
 M92386M92386AY677455None   L10V, I13V, I15V, G16E, K20R, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
Zeh (2005)99NG79599NG795AY103406None   L10I, I13V, K14R, G16E, E35D, M36I, R41K, L63T, H69Q, L89M, I93LA
Babic (2006)DB_SI6645-00SI6645-00AJ971272None   I13V, K20R, E35D, M36I, R57K, L63T, H69K, L89MA
Marechal (2006)JF_007JF_007DQ443629None   L10V, I13V, E35D, M36L, R41K, R57K, L63T, H69K, L89MA
 JF_011JF_011DQ443633None   R8RG, E35D, M36I, R41K, L63T, H69K, P79R, L89MA
 JF_026JF_026DQ443643None   I13V, I15V, E35D, M36I, R41K, L63T, H69K, L89MA
Niama (2006)ARV81ARV81FM164893None   L10I, T12A, I13V, L19I, K20R, M36I, N37D, R41K, L63T, H69Q, L89MA
Saad (2006)MDS_02UACR00302UACR003DQ055266None   I13V, K14R, G16E, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 MDS_02UAKV17902UAKV179DQ055307None   E35D, M36I, R41K, Q61QE, L63T, H69K, L89M, I93LA
Saad (2006)MDS_01AZ00101AZ001DQ328519None   I13V, K14R, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 MDS_02AZ00702AZ007DQ328533None   I13V, K14R, G16E, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
Vessiere (2006)AV_M5348NAV_M5348NDQ297275None   L10I, I13V, G16E, E35D, M36I, R57K, L63T, H69K, K70R, L89MA
Vidal (2006)NV_KS03502.KS035AM040993None   L10V, I13V, G16E, E35D, M36I, R41K, K45R, L63T, H69K, L89MA
 NV_KS06902.KS069AM040999None   G16E, K20R, E35D, M36I, R41K, I62V, L63T, E65D, H69K, L89MA
 NV_KS07202.KS072AM041010None   G16E, K20R, E35D, M36I, P39S, R41K, K45R, I62V, L63T, E65D, H69K, I72T, L89MA
Visawapoka (2006)KNH1271KNH1271AY945736None   L10V, I13V, K14R, G16E, E35D, M36I, P39S, R41K, K43R, L63T, G68E, H69K, K70R, L89M, T91VA
Zarandia (2006)MZ_03GEMZ00903GEMZ009DQ205268None   I13IV, K14R, E35D, M36I, R41K, Q61E, L63T, H69K, V77I, L89MA
Baker (2007)P0018P0018-240105EF186133None   I13V, K14R, I15V, E35D, M36L, N37D, R41K, L63T, H69K, V77I, L89MA
Church (2007)129779W129779WEF612184None   I13V, K14R, G16E, Q18E, E35D, M36I, R41K, R57K, L63T, I64L, H69K, V77I, L89MA
Derache (2007)13201320EF064534None   L10I, I13V, K14R, G16E, E35D, M36I, L63T, H69K, K70R, L89MA
Galluzzo (2007)23170RW_23170JQ220037None   I13V, K14R, E35D, M36I, R41K, R57K, D60DE, L63T, H69K, L89MA
von Wyl (2007)597207989EF449920None   L10I, I13V, E35D, M36I, R41K, R57K, D60E, L63T, H69K, V77I, L89MA
Church (2008)347758P347758PEU380724None   I13V, G16E, E35D, M36I, R41K, R57K, L63T, I64V, H69KA
 390900V390900VEU380746None   L10V, I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
Holguin (2008)SP94-246975SP94-246975EU342781None   L10V, I13V, G16E, K20R, E35D, M36I, P39S, R41K, K45R, L63T, E65D, H69K, L89MA
Ndembi (2008)IAEM028IAEM028EU306761None   K14R, L19V, E35D, M36I, R41K, R57K, L63T, H69K, I72V, V77I, L89MA
 IAEM060IAEM060EU306781None   I13V, K14R, G16E, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
Ntemgwa (2008)775004CA7750EU220698None   L10V, I13V, K14R, G16E, E35D, M36I, R41K, R57K, L63T, H69K, K70R, L89MA
Nyombi (2008)TMS006TMS006EU251787None   I13V, K14T, L19V, K20R, E35D, M36I, R41RK, R57K, L63T, H69K, I72T, L89MA
Somi (2008)KG-05-372KG-05-372JQ616955None   I13V, E35D, M36I, N37D, R41K, K45R, R57K, L63T, H69K, L89MA
 OY-05-514OY-05-514JQ616978None   I13V, K20R, E35D, M36I, R41K, R57K, L63T, H69K, K70KR, L89MA
Aghokeng (2009)CYV085CYV085GU191582None   L10M, I13V, G16E, K20R, E35D, M36I, R57K, L63T, H69K, L89MA
Auwanit (2009)95AE-PR95FJ463528None   I13IV, I15V, Q18E, E35D, M36I, R41K, R57K, Q58T, L63T, H69K, L89MA
Bartolo (2009)LFA9001AOLFA90EU068271None   L10I, I13V, K20I, E35D, M36I, L63T, H69K, L89MA
 SNS4901AOSNS49EU068304None   L10I, I13V, K20I, E35D, M36I, L63T, H69K, L89MA
Brown (2009)CAS_108_1_7868CAS_108_1_7868FJ030651None   L10I, I13V, G16E, K20R, E35D, M36I, R41K, K45R, R57K, L63T, H69K, A71T, I72IT, L89M, I93LA
Cuevas (2009)P0984P0984.1EU822540None   L10V, I13V, G16E, Q18QH, K20RT, D25H, E35D, M36I, P39S, R41K, K45R, L63T, E65D, H69K, L89MA
Eshleman (2009)K20527W208-101565FJ389121None   I13V, K20T, E35D, M36I, R41K, K45R, R57K, D60E, L63T, H69K, L89MA
Hawkins (2009)P625ZZP625FJ931133None   I13V, E35D, M36I, R41K, R57K, L63T, I64L, H69K, K70KR, I72T, V82VI, L89MA
Kousiappa (2009)CY012CY012EU673381None   L10I, V11L, I13V, K14KR, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
 CY178CY178EU673409None   I13V, K14N, E35D, M36I, R57K, L63T, H69K, I72T, T74S, L89M, I93IL, F99FLA
Thomson (2009)915_1010RU_915_1010FJ009722None   I13IV, E35D, M36I, R41K, I62IV, L63T, H69K, L89MA
 915_1039RU_915_1039FJ009735None   L10I, I13V, K14KR, G16E, E35D, M36I, R41K, I62IV, L63T, H69K, V77I, L89MA
Vercauteren (2009)pt18012498506932GQ399223None   I13IV, I15V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 pt11386333422541GQ399886None   L10I, I13V, K14R, I15IM, E35D, M36I, R41K, K45KR, R57K, L63T, H69K, L89M, Q92KA
 pt8108320760104GQ400214None  I50NL10I, I13V, G16E, E35D, M36I, R57K, L63T, H69K, I72IT, L89MA
 pt449cfaddK8srwGQ400575None   L10I, I13V, K14R, G17D, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
Vidal (2009)KTB119KTB119FM877777None   G16E, K20R, T31P, E35D, M36I, P39S, R41K, K43R, I62V, L63T, E65D, H69K, T74S, L89MA
 LBTB032LBTB032FM877779None   I13V, G16E, K20R, E35D, M36I, P39S, R41K, I62V, L63T, E65D, H69K, T74S, L89MA
 KS069KS069FM877780None   G16E, K20R, E35D, M36I, R41K, I62V, L63T, E65D, H69K, L89MA
 MBTB047MBTB047FM877782None   G16E, K20R, E35D, M36I, P39S, R41K, I62V, L63T, E65D, H69K, L89MA
Yebra (2009)SP71-372939SP71-372939EU255373None   L10V, I13V, G16E, K20R, E35D, M36I, R41K, K45R, R57K, L63T, E65D, H69K, L89MA
Balode (2010)S2303S2303GU945173None  L33FI13V, K14R, E35D, M36I, P39PL, R41K, L63T, C67E, H69K, V77I, L89M, I93LA
 S2345S2345GU945186None   I13V, K14R, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 S2436S2436GU945194None   K14R, G16E, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
Diop-Ndiaye (2010)114HALD114HALDFN599681None   L10I, T12S, I13V, K14R, G16E, E35D, M36I, R41K, K45R, L63T, H69K, L89MA
Djoko (2010)603CD4751FR666603None   G16E, K20R, E35D, M36I, P39S, R41K, K43R, Q61H, I62V, L63T, E65D, H69K, T74S, L89MA
 638CD4292FR666638None   L10V, I13V, K14R, G16E, E35ED, M36I, N37EK, L63T, I64L, H69K, L89MA
 672CD3537FR666672None   I13IV, K14KR, E35D, M36I, R41K, L63T, E65ED, H69K, L89MA
 680CD0639FR666680None   I13V, K14T, G16E, E35D, M36I, P39AT, R41K, K45R, R57K, I62V, L63T, I64IV, E65D, H69R, L89MA
Djoko (2010)GQ01908GQ019FN557307None  L33IL10I, I13V, G16E, K20R, E35D, M36I, P39S, R41K, K45R, L63T, E65D, H69Q, L89MA
Ndembi (2010)13263D_P113263GQ409551None   E35D, M36I, R41K, R57K, L63T, H69R, I72T, L89MA
 DT3994_05_P13994GQ409628None   L10V, T12I, I13V, G16E, E35D, M36I, R41K, L63T, H69K, I72T, L89MA
Selimova (2010)26MOSR26MOSRHM345557None   L10I, E35D, M36I, R41K, L63T, H69K, V77I, L89MA
 40MOSR40MOSRHM345569None   E35ED, M36I, R41K, L63T, H69K, L89M, I93LA
Tovanabutra (2010)KECst_008KECst_008FJ623493None   I13V, G16E, K20R, E35D, M36F, R41K, Q61N, L63T, G68E, H69K, K70R, L89M, T91V, I93LA
 KECst_011KECst_011FJ623494None   I13V, G16E, K20R, E35D, M36I, R41K, Q61N, L63T, G68E, H69K, K70R, L89M, T91V, I93LA
Aghokeng (2011)HJ1867HJ1867JN639454None   L10I, E35D, M36I, R41K, R57K, L63T, C67DN, H69K, L89LMA
 SK8040-PISK8040-PIHQ864343None   I13IV, I15V, E35D, M36L, R41K, I62IV, L63T, I64M, H69K, L89MA
Avi (2011)086u086uGQ926649None   L10I, I13V, K14R, E35D, M36I, R41K, D60E, L63T, I64L, H69K, L89M, I93LA
Charpentier (2011)18CP0012151 None   G16E, E35D, M36I, R41K, L63T, H69K, K70R, I72T, L89MA
 23CP0012052 None  V11IL10I, I13V, K20R, M36I, L63T, I64L, H69K, L89MA
 44CP001899 None   L10LI, T12TAS, I13V, K14KR, I15IV, E35D, M36I, N37NT, R41RK, I62V, L63T, I64M, H69K, K70KR, L89MA
 118CP001234 None   L10I, I13V, I15IL, L19I, E35D, M36I, R41K, L63T, H69K, L89MA
 194CP001026 None   L10V, I13V, K14NS, G16E, E35D, M36I, R41K, L63T, H69K, L89MA
Charpentier (2011)CR-20CR-20FJ688226None   L10I, I13V, G16E, E35D, M36I, L63T, H69K, K70R, L89MA
de Felipe (2011)SE58PR_SE58JF338668None  L10FI13V, K14R, E35D, M36I, R41K, L63T, H69K, V77I, L89MA
Dean (2011)IVVI7396IVVI7396JQ312421None   L10V, K14R, G16E, M36I, N37D, R41K, L63T, H69K, L89M, I93LA
El Annaz (2011)1304913049HQ393312None   L10I, I13V, K14R, G16E, E35D, M36I, R41RK, L63T, H69K, L89MA
Hamers (2011)CP076301549CP076301549HQ993592None   L10LI, I13V, G16E, E35D, M36I, R41K, L63T, H69K, L89M, T91VA
 CP076301586CP076301586HQ993624None   K20R, E35D, M36I, R41K, L63T, H69K, L89M, T91V, I93LA
 CP076301666CP076301666HQ993667None   L10I, K20R, E35D, M36I, R41K, R57K, I62IV, L63T, E65D, H69K, L89MA
 CP076301671CP076301671HQ993670None   T12P, I13V, G16E, K20R, E35D, M36I, R41K, D60E, L63T, G68E, H69K, K70R, L89M, T91V, I93LA
 CP076301679CP076301679HQ993675None   I13V, K14R, G16E, E35D, M36I, R41K, Q61DE, L63T, E65D, H69K, L89MA
 CP076301715CP076301715HQ993708None   L10V, T12I, G16E, E35D, M36I, P39S, R41K, I62V, L63T, H69K, L89MA
 CP076301717CP076301717HQ993710None   I13V, K14R, I15V, K20R, E35D, M36I, N37D, R41K, D60E, L63T, H69K, L89M, I93LA
 CP076301722CP076301722HQ993715None   T12TP, I13V, G16E, E35D, M36L, R41K, R57K, L63T, I64L, H69K, L89MA
 CP076301728CP076301728HQ993721None   L5X, T12X, I13V, K14R, I15V, G16E, K20R, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
 CP076301760CP076301760HQ993748None   I13V, G16E, K20R, E35D, M36I, R41K, L63T, G68E, H69K, K70R, V82I, L89M, T91V, I93LA
 CP076302281CP076302281HQ993775None   L10I, K20R, E35D, M36I, R41K, R57K, I62IV, L63T, E65D, H69K, L89MA
 CP076301629CP076301629HQ993778None   I13V, K14R, G16E, K20R, E35D, M36I, R41K, L63T, G68E, H69K, L89IM, T91V, I93LA
 CP076301635CP076301635HQ993782None   L10V, K14N, E35D, M36I, R41K, L63T, H69K, I72IT, L89MA
 CP076301638CP076301638HQ993784None   L10I, I13V, K14R, E35D, M36I, N37D, R41K, L63T, H69K, I72IT, L89MA
 CP076301650CP076301650HQ993793None   I13V, E35D, M36I, N37D, P39Q, R41K, K45R, R57K, L63T, H69K, L89MA
 CP076301674CP076301674HQ993802None   I13V, K14R, G16E, K20R, E35D, M36I, R41K, L63T, G68E, H69K, L89M, T91V, I93LA
 CP076302313CP076302313HQ993855None   L10V, I13V, K14R, G16E, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 CP076304140CP076304140HQ993876None   L10I, I13V, G16A, M36I, R41K, K43R, R57K, L63T, H69KN, K70R, V82I, L89IA
 CP076304215CP076304215HQ993912None   I13V, E35D, M36I, R41K, K45R, R57K, L63T, H69K, I72V, L89MA
 CP076304244CP076304244HQ993935None   L10I, I13V, I15V, E35D, M36I, N37D, R41K, R57K, L63T, H69Q, L89MA
 CP076304279CP076304279HQ993964None   L10LI, I13V, E35D, M36I, R41K, K45R, L63T, I64IL, H69K, L89MA
 CP076304339CP076304339HQ993970None   I13V, K14KR, I15IV, G16GE, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
 CP076300716CP076300716HQ994922None   I13V, K14R, K20I, E35D, M36I, R41K, L63T, I64M, H69K, L89MA
 CP076302048CP076302048HQ995020None   L10V, I13V, G16E, K20R, E35D, M36I, R41K, K45R, R57K, L63T, L89MA
 CP076302055CP076302055HQ995022None   I13V, K14R, K20I, E35D, M36I, R41K, L63T, H69K, T74S, L89MA
 CP076302981CP076302981HQ995058None   I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 CP076300890CP076300890HQ995139None   I13V, M36I, R41K, L63T, I64M, H69K, L89MA
 CP076301793CP076301793HQ995147None   I13V, K14KR, I15IV, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 CP076302028CP076302028HQ995195None   L10I, I13V, G16E, E35D, M36I, R57K, L63T, H69K, K70KR, L89MA
 CP076303065CP076303065HQ995245None   I13V, K20KR, E35D, M36I, R41K, R57RK, I62V, L63T, H69K, T74S, V75I, L89MA
 CP076300703CP076300703HQ995310None   I13V, K14N, E35D, M36I, R41K, K45R, Q61H, L63T, H69K, L89MA
 CP076300781CP076300781HQ995347None   P1L, I13V, G16E, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 CP076301952CP076301952HQ995417None   I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
Kasang (2011)60106010HM572368None   I13V, K14KR, I15V, E35D, M36I, R41K, R57RK, L63T, H69K, I72IV, L89MA
 1718717187HM572395None   L10I, I13V, K14R, I15V, E35D, M36I, R41RK, L63T, H69K, K70Q, I72IT, L89M, F99FLA
Kousiappa (2011)CY243CY243JF683789None   L10I, I13V, K14D, G16E, L19I, E35D, M36I, K45R, R57K, L63T, H69K, L89MA
Ndembi (2011)NTCPS724NTCPS724HQ702622None   I13V, K14R, E35D, M36L, R41K, K45R, R57K, L63T, H69K, V77I, L89MA
 AICPS165AICPS165HQ702670None   T12S, I13V, K14R, K20R, E35D, M36I, N37D, R41K, K43R, R57K, L63T, H69K, I72M, L89MA
Ng (2011)HM149HM149HQ539174None   L10I, E35D, M36I, R41K, L63T, C67H, H69K, L89MA
Yang (2011)KN-78KN-78JQ616924None   T12S, I13V, K14R, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 KEN-80TKEN-80T None   L10V, E35D, M36I, N37D, R41K, R57K, L63T, H69K, L89MA
Afonso (2012)ANG40ANG40JN937053None   E35K, M36I, N37D, R41K, R57K, L63T, H69K, V82I, L89MA
De Gascun (2012)IRL10565IRL10565JN622281None   L10I, I13IM, E35D, M36I, R41K, R57K, I62V, L63T, E65D, H69K, T74S, L89MA
Karlsson (2012)SE_34SE_34JQ698689None  V11II13V, K14R, I15V, G16GE, K20R, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 SE_185SE_185JQ698793None   I13V, K14S, K20I, E35D, M36I, R57K, L63T, I64L, H69K, I72T, T74S, L89MA
 SE_186SE_186JQ698794None   L10I, I13V, K14E, G16E, L19Q, K20R, E35D, M36I, P39PS, K45R, R57K, L63T, H69K, L89MA
Nazziwa (2012)10338021033802JX498988None   L10V, T12P, I13V, K14R, I15V, G16E, K20I, E35N, M36I, R41K, L63T, H69K, L89M, C95GA
Ndase (2012)5411123254111232KC900614None   I13V, K14R, G16E, E35D, M36I, R41K, R57K, L63T, H69K, P79PH, L89MA
 5514338255143382KC900592None   I13V, E35D, M36I, R41K, D60E, L63T, H69K, I72T, L89MA
 5802814258028142KC900773None   I13V, E35D, M36I, R41K, K45KR, L63T, H69K, L89MA
 5514457255144572KC900616None   I13V, E35D, M36I, R41K, D60E, L63T, H69K, I72T, L89MA
 5800916258009162KC900719None   I13V, G16E, E35D, M36L, P39S, R41K, R57K, L63T, H69K, V77I, L89MA
 5706145257061452KC900562None   K14R, K20R, E35D, M36I, R41K, R57K, I62V, L63T, H69K, K70KR, L89MA
 5006086250060862KC900696None   I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 5002788250027882KC900707None   I13V, K14R, E35D, M36I, R41K, R57K, L63T, H69K, I72V, L89MA
 5410837254108372KC900590None   I13V, K14R, G16E, E35D, M36I, R41K, R57K, L63T, H69K, P79PH, L89MA
 5306795253067952KC900693None   I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63T, H69K, I72T, L89MA
Rolland (2012)AA113a_LH8AA113a_LH8JX448084None   T12I, I13V, G16E, E35D, M36I, R41K, L63T, H69K, K70R, I72T, L89M, T91VA
Sigaloff (2012)KELKN235KELKN235JN628503None   I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 KELKN253KELKN253JN628516None   L10I, I13V, K14R, G16E, E35D, M36I, R41K, L63T, H69K, L89MA
Ssemwanga (2012)RCC_TDR_483429RCC_TDR_483429JQ266034None   L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63T, E65D, H69K, K70R, L89MA
 RCC_TDR_480611RCC_TDR_480611JQ266039None   K14R, E35D, M36I, N37E, R41K, R57K, L63T, E65D, H69K, L89MA
Ssemwanga (2012)3683HR3683HRJF800225None   I13V, I15V, E35D, M36I, R41K, R57K, D60E, L63T, H69K, L89MA
Aghokeng (2013)HJ3393HJ3393JX983031None   L10I, I13V, L19I, E35D, M36I, R41K, L63T, H69K, I72T, L89MA
Antoniadou (2013)GR134GR134KF671842None   L10M, I13V, K14N, E35D, M36I, R57K, L63T, H69K, K70KR, I72IT, V77I, L89MA
 GR066GR066KF671788None   L10I, I13V, I15L, K20R, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
 GR107GR107KF671816None   L10I, I13V, L19I, E35D, M36I, R41K, K45R, R57K, D60E, L63T, C67Y, H69Q, L89MA
 GR126GR126KF671835None   I13V, K14S, E35D, M36I, G40GR, R57K, L63T, I64IM, H69K, I72T, L89MA
 GR121GR121KF671830None   I13V, G16E, E35D, M36I, R57K, L63T, H69K, I72T, L89MA
 GR140GR140KF671849None   L10M, I13V, K14N, E35D, M36I, R57K, L63T, H69K, V77I, L89MA
Avi (2013)8989JX431668None   I13V, K14R, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
Avidor (2013)2017_MT2017_MTKC184342None   K14R, I15V, G16E, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 1976_FT1976_FTKC184308None   I13V, E35D, M36I, R41K, L63T, H69K, I72IT, V77VI, L89MA
 1991_MT1991_MTKC184320None   K14R, I15V, G16E, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 19991999 None   K14R, G16E, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 855855 None   L10I, I13V, K14R, I15V, E35D, M36I, N37D, R41K, L63T, C67Y, H69K, K70R, L89MA
 20362036KC184346None   L10LI, I13V, G16GE, L23R, E35D, M36I, R41K, L63T, H69K, L89I, I93LA
 13061306KC184176None   L10I, I13V, I15V, K20KR, E35D, M36I, N37D, R57K, L63T, H69K, L89MA
 15661566KC184198None   K14R, K20R, E35D, M36I, N37D, R41K, L63T, I64IM, H69K, L89M, I93ILA
 15911591KC184205None   L10LI, I13V, K14R, Q18E, E35D, M36I, N37D, R41K, D60N, Q61E, L63T, H69K, I72IT, L89M, I93LA
 19461946KC184281None   L10LV, I13V, E35D, M36I, N37D, R41K, L63T, E65D, H69K, L89MA
Bila (2013)MzNat062HIV-1KF927377None   K20N, E35D, M36I, R41K, K45R, R57K, L63T, H69K, G86E, L89MA
 MzNac197HIV-1KF927395None   I13V, K14R, G16E, K20R, E35D, M36I, R41K, R57K, L63T, I64L, H69K, L89MA
Caplinskas (2013)13321332JX946640None   L10I, I13V, K14R, G16GE, E35D, M36I, R41K, R57RK, D60E, Q61E, I62V, L63T, E65D, H69K, L89MA
 13421342JX946645None   I13IV, K14KR, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
Frentz (2013)EHR-20653EHR-20653JX299879None  L33FI13V, K14R, E35D, M36I, P39PL, R41K, L63T, C67E, H69K, V77I, L89M, I93LA
 EHR-51234EHR-51234JX300393None   I13V, K14KR, E35D, M36I, R41K, I62IV, L63T, H69K, T74S, V77I, L89M, I93LA
 EHR-606204EHR-606204JX300549None   I13V, K14R, I15V, M36I, N37D, R41K, K43R, L63T, I64M, H69K, L89MA
 EHR-61429EHR-61429JX300565None   K14R, G16E, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 EHR-65414EHR-65414JX300641None   L10V, I13V, K14R, G16E, M36L, N37S, R41K, L63T, H69K, L89MA
Hassan (2013)RS09000875RS09000875HQ441620None   I13V, G16E, E35D, M36I, R41K, L63T, H69K, L89M, T91VA
 RS09000906RS09000906HQ441651None   T12TA, I13V, K14KR, I15IV, G16E, E35D, M36I, R41K, L63T, G68D, H69R, L89M, T91V, I93LA
 RS09000931RS09000931HQ441673None   I13V, G16E, K20R, E35D, M36I, R41K, L63T, G68E, H69K, K70R, V82I, L89M, T91V, I93LA
 RS09000962RS09000962HQ441700None   I13V, G16E, K20R, E35D, M36I, R41K, L63T, G68E, H69K, K70R, L89M, T91V, I93LA
 RS11000276RS11000276JQ698367None   T12TP, I13V, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
 RS11000340RS11000340JQ698413None   L10I, I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 RS11000350RS11000350JQ698421None   I13IV, G16E, K20R, E35D, M36I, R41RK, I62V, L63T, G68E, H69R, L89M, T91V, I93LA
 RS11000363RS11000363JQ698429None   L10I, I13V, G16E, E35D, M36I, R41K, R57K, Q61E, L63T, E65D, H69K, L89MA
Inzaule (2013)472472JQ914056None   I13V, K14R, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, H69K, L89MA
 496496JQ914057None   I13V, E35D, M36I, N37D, P39PS, R41K, R57K, L63T, H69K, L89MA
Kiertiburanakul (2013)R71TS260R71TS260KC921729None   L10I, I13V, I15V, K20R, E35D, M36I, R41K, L63T, H69K, L89MA
 R41161R41161KC970897None   L10V, I15V, G16E, K20R, E35D, M36I, R41K, L63T, H69K, I72T, L89MA
Kiptoo (2013)KTL023KTL023KC517022None   G16E, K20R, M36I, L63T, H69K, L89M, T91V, I93LA
 KAP053KAP053KC516902None   L10I, I13V, K14R, G16E, L19I, E35D, M36I, R41K, R57K, D60E, L63T, H69K, L89MA
 SNH021SNH021KC516938None   I13V, K14R, E35D, M36I, R41K, R57K, L63T, H69K, T74S, L89MA
 KTL018KTL018KC516994None   I13V, K14R, M36I, N37D, R41K, R57K, L63T, I64L, H69K, L89MA
Nii-Trebi (2013)KF347KF347AB751495None   L10I, I13V, K14R, E35D, M36I, R41K, L63T, H69K, L89MA
Nzeyimana (2013)201_4414201_4414HG780616None   I13V, E35D, M36I, R41K, L63T, H69K, L89MA
 102_1013102_1013HG780855None  L33LFI13V, E35D, M36I, R41K, R57K, L63T, I64IM, H69K, L89M, C95CWA
Ong (2013)09MYKL02609MYKL026KC181225None   L5F, L10I, I13V, G16E, K20R, E35D, M36I, L63T, C67S, H69K, L89MA
Pircher (2013)B1154B1154JX110338None   L10V, I13V, K14R, G16E, E35D, M36I, R41K, K43KR, L63T, H69K, K70R, L89MA
Rusine (2013)711H711HKC841735None   L10M, I13V, E35D, M36I, N37D, R41K, K45R, R57K, L63T, C67S, H69K, L89MA
 447H447HKC841698None   L10M, T12A, I13V, K14KR, G16E, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 728H728HKC841750None   L10V, I13V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, H69K, L89MA
Theys (2013)57245724KY386689None   I13V, I15V, K20R, E35D, M36I, N37D, L63T, H69K, K70R, I72V, L89MA
Van Zyl (2013)O1127347KC423998None   L10I, I13V, G16E, E35D, M36I, R41K, L63T, H69K, K70R, I72M, L89MA
Bartolo (2014)09AOHDP5909AOHDP59KF853868None   I13V, G16E, K20R, E35D, M36I, R41K, K45R, L63T, H69K, K70R, L89MA
Chung (2014)KGL36_RT_210eKGL36_RT_210eKF544238None   E35D, M36I, N37D, R41K, R57K, L63T, E65D, H69K, L89MA
 KTF_34_KA249eKTF_34_KA249eKF544249None   E35D, M36I, R41K, R57K, I62V, L63T, H69K, T74S, L89MA
 KTA_36_KA231eKTA_36_KA231eKF544247None   E35D, M36I, K45R, R57K, L63T, C67Y, G68E, H69R, L89MA
 KEW34_RT_163eKEW34_RT_163eKF544229None   N37D, R57K, L63T, H69Q, L89MA
 KTF_39_KA256eKTF_39_KA256eKF544271None   I13V, L19I, E35D, M36I, R41K, R57K, I62V, L63T, H69K, L89MA
Crawford (2014)SN-082031SN-082031KF781829None   I13V, K14R, G17E, K20R, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
 SN-072012SN-072012KF781827None   L10I, T12V, I13V, G16E, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
Hassan (2014)RS11000374RS11_374KC568502None   I13V, G16E, K20R, E35D, M36I, R41K, D60E, L63T, G68E, H69K, K70R, L89M, T91V, I93LA
 RS11000515RS11_515KC568530None   I13V, I15V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 RS11000450RS11_450KC568519None   G16E, E35D, M36I, P39S, R41K, D60E, I62V, L63T, H69K, K70R, V77I, L89M, T91VA
 RS11000411RS11_411KC568509None   L10V, I13V, G16E, E35D, M36I, R41K, L63T, H69K, K70R, L89IA
Kolomeets (2014)171171_263KJ870385None   G16E, K20KR, E35D, M36I, R41K, Q61E, L63T, H69K, L89M, I93LA
 3939_642KJ870667None   G16A, E35D, M36I, R41K, L63T, H69K, V77I, L89MA
 422422_576KJ870618None   I13V, G16R, E35D, M36I, R41K, L63T, H69K, V77I, L89MA
 148148_132KJ870282None   L10LV, I13V, K14R, G27E, E35D, R41K, Q61E, L63T, H69K, I72T, T74A, V77I, L89MA
 131131_255KJ870378None   K14R, G16E, E35D, M36I, R41K, L63T, H69K, V77I, L89M, I93LA
 3232_267KJ870388None   L10I, I13V, K14R, G16AE, E35D, M36I, R41K, Q61QE, I62IV, L63T, H69HQ, V77I, L89MA
 238238_177KJ870319None   I13V, E35D, M36I, R41K, L63T, H69K, L89M, I93LA
 3232_324KJ870437None   L10I, I13V, K14R, G16E, E35D, M36I, R41K, Q61QE, I62IV, L63T, H69HQ, V77I, L89MA
 369369_485KJ870554None   L10LI, I13IV, K14KR, K20KR, E35D, M36I, N37ND, R41K, Q61QE, L63T, C67CR, H69K, L89MA
 347347_527KJ870585None   I13V, K14R, G16A, M36I, N37D, R41K, L63T, H69K, V77I, L89MA
 222222_315KJ870428None   L10I, E35D, M36I, R41K, Q61E, L63T, H69K, V77I, L89MA
 254254_162KJ870306None   I13V, E35D, M36I, R41K, L63T, H69K, T74S, V77I, L89M, I93LA
Lee (2014)MBA1180MBA1180KJ906878None   L10I, I13V, G16GE, E35D, M36I, R41RK, K45KR, R57RK, L63T, H69K, K70KR, I72IT, L89MA
 MBA1221MBA1221KJ906916None   L10I, I13V, K14R, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 MBA1250MBA1250KJ906944None   L10V, I13V, I15V, E35D, M36I, R41K, K45R, R57K, I62IV, L63T, I64M, H69K, L89MA
 MBA1525MBA1525KJ907196None   I13V, K14R, G17D, K20R, E35D, M36I, R41K, K45R, R57K, L63T, E65D, H69K, L89MA
 MBA1116MBA1116KJ906815None   L10LV, I13V, K20R, E35D, M36I, R41K, R57K, L63T, H69K, I72IV, L89LMA
 MBA1256MBA1256KJ906949None   L10I, I13V, K20R, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 MBA1149MBA1149KJ906847None   L10LV, I13V, K14R, G16E, E35D, M36I, R41K, L63T, H69K, V77I, L89MA
 MBA1439MBA1439KJ907121None   T12TA, I13V, E35D, M36I, N37E, R41K, R57K, L63T, H69K, L89MA
 MBA1203MBA1203KJ906900None   L10I, T12TI, I13V, G16GE, L19LV, E35D, M36I, N37ND, R41K, I62IV, L63T, I64IL, E65ED, H69K, L89MA
 MBA1172MBA1172KJ906870None   L10LV, T12A, I13V, K14R, I15IV, G16E, E35D, M36I, R41K, R57RK, L63T, H69K, I72IT, L89MA
Meixenberger (2014)11-0235411-02354KJ771541None  V11VIL10V, T12TA, I13V, K14GR, G16E, K20R, E35D, M36I, R41K, R57K, L63T, H69K, K70R, L89IA
 09-0228209-02282KJ771053None   T12P, K14R, G16E, K20KR, E35D, M36I, R41K, L63T, E65D, H69K, L89M, I93LA
Parczewski (2014)I64_1I64_1KM284664None   L10I, T12TA, G16GE, E35D, M36I, N37D, R41K, Q61E, L63T, I64L, H69K, V77VI, L89MA
Wallis (2014)4123541235KM458480None   L10I, I13V, E35D, M36I, R41K, D60E, I62V, L63T, H69K, T74A, L89MA
 4149841498KM458592None   K14R, K20R, E35D, M36I, N37D, R41K, K45R, L63T, H69K, V77I, L89MA
Alexiev (2015)11BG119611BG1196KJ765465None   I13V, K14E, G16E, K20R, E35D, M36I, K45R, R57K, L63T, H69K, L89MA
Bruzzone (2015)HM0056FHM0056FEU914161None   I13V, I15V, G16E, E35D, M36I, K45R, L63T, G68D, H69R, L89MA
Budambula (2015)MK115MK115KP792109None   G16E, E35D, M36I, R41K, R57K, L63T, E65D, H69K, L89MA
 MK31MK31KP792025None   L10V, I13V, G16E, K20R, E35D, M36I, R41K, L63T, C67G, G68E, H69K, K70R, L89M, T91V, I93LA
 MK106MK106KP792100None   L10V, I13V, K14R, K20R, E35D, M36I, R41K, R57K, I62V, L63T, I64M, H69K, T74S, L89MA
 MK58MK58KP792052None   L10I, I13V, E35D, M36I, R41K, L63T, H69K, L89MA
 MK80MK80KP792074None   L10V, I13V, K14R, E35D, M36I, R57K, I62V, L63T, H69K, T74S, L89MA
 MK42MK42KP792036None   L10V, I13V, K14R, G16E, K20R, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 MK95MK95KP792089None   T12V, I13V, G17E, E35D, M36I, R41K, R57K, L63T, H69K, I72V, L89MA
 MK110MK110KP792104None   L10V, I13V, K14R, K20R, E35D, M36I, R41K, R57K, I62V, L63T, I64M, H69K, T74S, L89MA
 MK70MK70KP792064None   K20R, E35D, M36I, N37D, R41K, R57K, D60E, L63T, H69K, V77I, L89MA
 MK37MK37KP792031None   I13V, I15V, E35D, M36I, R41K, K45R, R57K, L63T, I64M, H69K, L89MA
Carvalho (2015)167167KM205911None   I13IV, K14R, G17E, K20R, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
 8484KM205994None   E35D, M36I, R41K, R57K, L63T, H69K, L89M, I93IL, F99FLA
 113113KM205965None   K14R, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
Dauwe (2015)A1_11038A1_11038KT863595None   L10V, I13V, G16E, E35D, M36I, R41K, L63T, H69K, L89MA
 A1_16338A1_16338KT863596None   L10V, I13V, K14R, G16E, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 A1_10019A1_10019KT863584None   L10I, K20R, E35D, M36I, R41K, L63T, H69Q, L89M, I93LA
Gashnikova (2015)Tomsk33Tomsk33KM676175None   G16E, E35D, M36I, R41K, L63T, H69K, V77I, L89M, I93LA
 Tomsk41Tomsk41KM676177None   G16E, E35D, M36I, R41K, L63T, H69K, V77I, L89M, I93LA
Li (2015)SF121302SF121302KR187848None   L10I, G16E, K20R, E35D, M36I, R41K, L63T, H69K, K70R, I72V, L89M, I93LA
 SF120404SF120404KR187758None   L10V, G17E, K20R, E35D, M36I, R41K, L63T, H69K, K70R, I72T, L89MA
 SF121815SF121815KR187958None   G16E, K20R, E35D, M36I, R41K, L63T, H69K, K70R, V77I, L89M, I93LA
Zhang (2015)HZ130264HZ130264KM258723None   G16E, K20R, E35D, M36I, R41K, L63T, H69K, K70R, V77I, L89M, I93LA
Billings (2016)KE884468V5KE884468V5KT022377None   L10I, I13V, K14R, G16E, K20R, E34D, E35D, M36I, N37D, R57K, L63T, H69K, K70R, I72M, L89MA
 KE484390V7KE484390V7KT022414None   I13V, E35D, M36I, N37D, R57K, L63T, H69K, T74S, V77I, L89MA
Billings (2016)CO3301V1CO3301V1KX907369None   L10V, I13V, G16E, E35D, M36I, R57K, L63T, H69K, L89MA
Castley (2016)P111540970P111540970KT228724None   L10V, I13V, I15V, E35D, M36I, R41K, R57K, L63T, H69K, L89M, N98NIA
 P127215188P127215188KT228833None   L10I, I13V, I15V, L19P, K20I, E35D, M36I, R41K, K43R, L63T, H69K, K70R, L89MA
Gashnikova (2016)Tyumen63Tyumen63KX640171None   I13V, G16E, E35D, M36I, N37K, R41K, L63T, H69K, V77I, L89M, I93LA
 Tyumen62Tyumen62KX640170None   I13V, G16E, K20R, E35D, M36I, R41K, L63T, H69K, L89MA
Hattori (2016)C09_110862C09-51110862-1AB865268None   I13V, I15V, E35D, M36I, R41K, K45R, R57K, L63T, H69K, V82I, L89MA
 E11_911149E11-50911149-1AB866255None   L10I, I13V, G16GA, E35D, M36I, R41K, K45R, L63T, H69K, I72IM, L89IMA
Hoenigl (2016)V0991386V0991386KU574512None   L10I, I13V, K14KR, G16E, K20KR, E35D, M36I, R41K, Q61E, L63T, C67CY, H69K, L89MA
 V0904903V0904903KU574474None   L10IM, I13V, K14KR, E35D, M36I, N37ND, R41K, L63T, I64IM, H69K, V77I, L89M, I93LA
Inzaule (2016)1.04721.0472HM164121None   L10V, G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, H69K, L89MA
 1.0472.8.81.0472.8.8KR086419None   G16E, K20R, E35D, M36I, R41K, R57K, L63T, E65D, H69K, L89MA
Ndahimana (2016)11991199KU922824None   L10I, I13V, G16E, E35D, M36I, R41K, R57K, L63T, H69K, K70R, L89IA
 12751275KU922780None   L5LP, L10I, T12A, I13V, K14R, I15V, G16E, E35D, M36I, P39S, R41K, R57K, D60E, L63T, H69K, L89MA
 11191119KU922813None   L10I, I13V, E35D, M36I, P39PS, R41K, K45R, R57K, L63T, H69K, K70KR, L89MA
 937937KU922828None   L10I, I13V, E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 961961KU922778None   L10V, T12P, I13V, K20R, E35D, M36I, N37D, R41K, I62V, L63T, H69K, T74A, V77VI, L89MA
Onsongo (2016)7979KM376191None   E35D, M36I, R41K, L63T, C67G, G68E, H69K, K70R, I72T, L89M, T91VA
 7777KM376190None   D25N, E35D, M36I, R41K, R57K, L63T, I64L, H69R, L89MA
 8585KM376194None   E35D, M36I, R41K, K43R, R57K, L63T, H69K, L89M, I93VA
Otecko (2016)410207410207KX306438None   I15V, E35D, M36I, P39S, R41K, R57K, L63T, H69K, L89MA
 404908404908KX306398None   K14R, E35D, M36I, R41K, R57K, I62V, L63T, H69K, L89MA
 406971406971KX306408None   I13V, G16E, K20R, E35D, M36I, P39S, R41K, L63T, H69K, L89MA
Pouran Yousef (2016)401809-02282KX466795None   T12P, K14R, G16E, K20KR, E35D, M36I, R41K, L63T, E65D, H69K, L89M, I93LA
 443211-02354KX467040None  V11VIL10V, T12TA, I13V, K14GR, G16E, K20R, E35D, M36I, R41K, R57K, L63T, H69K, K70R, L89IA
Reynolds (2016)B066571R16B066571R16KX944662None   L10V, I13V, K14R, G16E, E35D, M36I, R41K, K45R, R57K, L63T, H69K, L89MA
Zeh (2016)0510030_040510030_04KU248564None   E35D, M36I, N37D, R41K, K45R, R57K, L63T, H69K, L89MA
 3002660_053002660_05KU248707None   E35D, M36I, N37ND, R41K, R57K, I62S, L63T, H69K, K70KR, L89MA
 0510520_040510520_04KU248569None   E35D, M36I, R41K, R57K, L63T, H69K, L89MA
 3002620_053002620_05KU248706None   E35D, M36I, R41K, K43R, L63T, H69K, L89I, T91VA
 0510780_040510780_04KU248572None   E35D, M36I, N37D, R41K, K45R, R57K, L63T, H69K, L89MA
 0504720_040504720_04KU248537None   E35N, M36I, N37D, R41K, K45R, R57K, L63T, L89MA
 0518260_040518260_04KU248631None   E35D, M36I, R41K, K45R, R57K, L63T, I64L, H69K, L89MA
Zhao (2016)LS919LS919KT379926None   I13V, G16E, K20R, E35D, M36I, R41K, L63T, H69K, L89M, T91V, I93LA
 LS922LS922KT379928None   I13V, G16E, K20R, E35D, M36I, R41K, L63T, H69K, L89M, T91V, I93LA
 LS3988LS3988KT379279None   G17E, K20R, E35D, M36I, L63T, H69K, K70R, L89M, I93LA
Onywera (2017)11502021150202KX791008None   I13V, E35D, M36I, R57K, L63T, H69K, L89MA
 11502011150201KX791047None   I13V, E35D, M36I, R57K, L63T, H69K, L89MA